Query 030078
Match_columns 183
No_of_seqs 128 out of 218
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 13:00:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030078.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030078hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na7_A HP0958; flagellar bioge 65.8 54 0.0019 26.8 13.3 6 178-183 200-205 (256)
2 3ljm_A Coil Ser L9C; de novo d 24.2 96 0.0033 18.3 3.4 22 102-123 2-25 (31)
3 3oja_B Anopheles plasmodium-re 21.6 4.1E+02 0.014 23.3 11.6 48 130-177 539-586 (597)
4 2eqb_B RAB guanine nucleotide 17.6 3.1E+02 0.01 20.1 11.5 38 103-140 37-74 (97)
5 2e7s_A RAB guanine nucleotide 14.0 3.6E+02 0.012 20.9 5.6 38 103-140 57-94 (135)
6 3mq7_A Bone marrow stromal ant 12.1 4.9E+02 0.017 19.8 9.8 57 101-157 36-100 (121)
7 1oao_C CODH, carbon monoxide d 11.3 72 0.0025 31.1 1.0 7 40-46 365-371 (729)
8 3viq_A SWI5-dependent recombin 11.3 5E+02 0.017 19.4 7.9 62 106-167 7-68 (122)
9 3lvh_D LCB, clathrin light cha 10.2 5.8E+02 0.02 21.1 6.0 49 77-125 101-149 (205)
10 2rdc_A Uncharacterized protein 9.9 6.5E+02 0.022 19.8 7.3 56 87-145 52-107 (153)
No 1
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=65.79 E-value=54 Score=26.83 Aligned_cols=6 Identities=50% Similarity=1.043 Sum_probs=4.7
Q ss_pred CCCCCC
Q 030078 178 KLLGCF 183 (183)
Q Consensus 178 s~~gCF 183 (183)
.|.|||
T Consensus 200 ~C~GC~ 205 (256)
T 3na7_A 200 ACGGCF 205 (256)
T ss_dssp BCTTTC
T ss_pred ccCCCC
Confidence 378998
No 2
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=24.24 E-value=96 Score=18.28 Aligned_cols=22 Identities=50% Similarity=0.863 Sum_probs=12.4
Q ss_pred HHHHhHH--HHHHHHHHHHHHHHH
Q 030078 102 AWENSKK--ASLEAKLKKIEEQLE 123 (183)
Q Consensus 102 aWEn~qK--AKAEA~mrK~E~kLE 123 (183)
.||.+.| +..+.+|+-+|.+||
T Consensus 2 ewealekkcaalesklqalekkle 25 (31)
T 3ljm_A 2 EWEALEKKCAALESKLQALEKKLE 25 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3665544 345566666666555
No 3
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.60 E-value=4.1e+02 Score=23.29 Aligned_cols=48 Identities=21% Similarity=0.297 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCCCC
Q 030078 130 AEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPK 177 (183)
Q Consensus 130 ~EKm~NKiA~a~kkAEekRA~aeakr~ee~~Ka~EkA~k~R~TGk~P~ 177 (183)
.+.+.+++..+.+.-++++.....-+.+-.....+.-.....+..-|.
T Consensus 539 ~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~ 586 (597)
T 3oja_B 539 TEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPD 586 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred hhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 344556777777777777766665555544444555555556655553
No 4
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=17.58 E-value=3.1e+02 Score=20.14 Aligned_cols=38 Identities=24% Similarity=0.263 Sum_probs=33.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030078 103 WENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALV 140 (183)
Q Consensus 103 WEn~qKAKAEA~mrK~E~kLEkkRA~a~EKm~NKiA~a 140 (183)
=|..++..||....+++..||-.=+.+.+.-.+=++.+
T Consensus 37 eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~a 74 (97)
T 2eqb_B 37 KENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADA 74 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999887777766
No 5
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=14.00 E-value=3.6e+02 Score=20.85 Aligned_cols=38 Identities=24% Similarity=0.257 Sum_probs=33.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030078 103 WENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALV 140 (183)
Q Consensus 103 WEn~qKAKAEA~mrK~E~kLEkkRA~a~EKm~NKiA~a 140 (183)
=|..++..||....+++..||-.=+.+.+.-.+=++.+
T Consensus 57 eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~a 94 (135)
T 2e7s_A 57 KENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADA 94 (135)
T ss_dssp HTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678999999999999999999999999887777665
No 6
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=12.14 E-value=4.9e+02 Score=19.85 Aligned_cols=57 Identities=19% Similarity=0.288 Sum_probs=36.7
Q ss_pred HHHHHhHHHHHHHH-----HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 030078 101 AAWENSKKASLEAK-----LKKIEEQLERKKAE---YAEKMKNKVALVHKEAEEKRAMVEARRGE 157 (183)
Q Consensus 101 ~aWEn~qKAKAEA~-----mrK~E~kLEkkRA~---a~EKm~NKiA~a~kkAEekRA~aeakr~e 157 (183)
++|+.+..+.+.+. +..+-.-|+++++. -++++.++|.....+-+..-+.++..|..
T Consensus 36 qAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 36 EAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46666666665554 34444556666554 36677788888888877777776665544
No 7
>1oao_C CODH, carbon monoxide dehydrogenase/acetyl-COA synthase alpha; oxidoreductase-transferase complex, electron transfer, oxidoreductase; 1.90A {Moorella thermoacetica} SCOP: e.26.1.3 PDB: 2z8y_M 3i01_M 3i04_M 1mjg_M 1ru3_A 3git_A 3s2x_A
Probab=11.30 E-value=72 Score=31.12 Aligned_cols=7 Identities=14% Similarity=-0.325 Sum_probs=2.5
Q ss_pred hhccCCC
Q 030078 40 KAVTQLH 46 (183)
Q Consensus 40 ~~~~~~~ 46 (183)
+..+-.|
T Consensus 365 KI~viGP 371 (729)
T 1oao_C 365 KIEVIGP 371 (729)
T ss_dssp CEEEESC
T ss_pred eEEEECC
Confidence 3333333
No 8
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=11.27 E-value=5e+02 Score=19.39 Aligned_cols=62 Identities=15% Similarity=0.118 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 030078 106 SKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAA 167 (183)
Q Consensus 106 ~qKAKAEA~mrK~E~kLEkkRA~a~EKm~NKiA~a~kkAEekRA~aeakr~ee~~Ka~EkA~ 167 (183)
.++.....+|+.++.+|+.-+.-..=.-.|+...+...-..+|.....--.+=...+.++.+
T Consensus 7 ~~~~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~eL~~LI~KWr~asq~aaeeLf~~~~~rv~ 68 (122)
T 3viq_A 7 SRRLKLEKEVRNLQEQLITAETARKVEAKNEDKDLQTLIQKWKNAAQQAAEVLFKPMAERIR 68 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888899999999988877666666777777777777777655544444444444443
No 9
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=10.15 E-value=5.8e+02 Score=21.10 Aligned_cols=49 Identities=20% Similarity=0.403 Sum_probs=26.4
Q ss_pred hHHHHHHHHHhHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 030078 77 FIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERK 125 (183)
Q Consensus 77 ~a~AWEeaEkaK~~~R~~keeakI~aWEn~qKAKAEA~mrK~E~kLEkk 125 (183)
.|..|-+..+..+..|-...+.+-..|...-+.-.+-.-.....+|+|-
T Consensus 101 sIRkWREEq~kRLeekDa~sekkk~E~rekAkKeLddwY~~yneqlEK~ 149 (205)
T 3lvh_D 101 SIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 149 (205)
T ss_dssp HHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666555555555555555544444444444444444443
No 10
>2rdc_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Geobacter sulfurreducens pca}
Probab=9.95 E-value=6.5e+02 Score=19.84 Aligned_cols=56 Identities=14% Similarity=0.154 Sum_probs=47.9
Q ss_pred hHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030078 87 TKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAE 145 (183)
Q Consensus 87 aK~~~R~~keeakI~aWEn~qKAKAEA~mrK~E~kLEkkRA~a~EKm~NKiA~a~kkAE 145 (183)
.++-++-.+++..|+.|--..-. .++|-+-++|++-|..+++-+-..+..++|.++
T Consensus 52 ~~Y~~~V~~mE~~i~t~RfrlEg---eEYRd~ve~LDrtR~~aH~a~ISs~kIiNR~~~ 107 (153)
T 2rdc_A 52 TRYFSKVVEMEHRMASARFRLDG---EELRELTETLDRSRRLAHESLISSLHVFNRYIV 107 (153)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888889999999999765543 568888899999999999999999999988876
Done!