Query 030078
Match_columns 183
No_of_seqs 128 out of 218
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 13:00:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030078.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030078hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2d4ca1 a.238.1.1 (A:11-247) E 17.1 1.1E+02 0.0082 21.3 5.4 50 87-136 149-198 (237)
2 d1dfup_ b.53.1.1 (P:) Ribosoma 12.8 15 0.0011 24.6 -0.8 17 165-181 16-32 (94)
3 d1zl8a1 a.194.1.1 (A:4-53) Lin 4.2 3.6E+02 0.026 16.1 3.0 23 156-178 3-25 (50)
4 d1llaa1 a.85.1.1 (A:2-109) Hem 3.8 1.7E+02 0.013 19.8 1.4 16 168-183 32-48 (108)
5 d1tnsa_ a.6.1.7 (A:) mu transp 3.7 2.7E+02 0.02 17.6 2.3 20 163-183 56-75 (76)
6 d1y74a1 a.194.1.1 (A:17-73) Li 3.1 4.2E+02 0.031 16.1 2.6 22 157-178 5-26 (57)
7 d1t92a_ d.24.1.3 (A:) Pullulan 3.0 6.5E+02 0.048 16.2 4.2 22 106-127 6-27 (108)
8 d2dj7a2 g.39.1.3 (A:8-43) Acti 2.9 2.1E+02 0.015 16.1 0.9 7 176-182 8-14 (36)
9 d1k78a2 a.4.1.5 (A:82-142) Pax 2.9 2.1E+02 0.015 17.8 0.9 20 85-104 13-32 (61)
10 d2c0sa1 a.30.7.1 (A:1-57) Hypo 2.9 5.2E+02 0.038 15.6 2.9 17 115-131 3-19 (57)
No 1
>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.11 E-value=1.1e+02 Score=21.33 Aligned_cols=50 Identities=12% Similarity=0.072 Sum_probs=37.0
Q ss_pred hHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030078 87 TKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNK 136 (183)
Q Consensus 87 aK~~~R~~keeakI~aWEn~qKAKAEA~mrK~E~kLEkkRA~a~EKm~NK 136 (183)
.+....|........++-+.....++.+|+..+.+++..+..+...|.+=
T Consensus 149 ~~~rk~~d~~~~~~~~~~~k~~~~~~e~l~~a~~~~e~~~~~~~~~l~~l 198 (237)
T d2d4ca1 149 QHHLKKLEGRRLDFDYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNL 198 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666677666666778889999999999998888888753
No 2
>d1dfup_ b.53.1.1 (P:) Ribosomal protein L25 {Escherichia coli [TaxId: 562]}
Probab=12.76 E-value=15 Score=24.57 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=13.8
Q ss_pred HHHHHhhcCCCCCCCCC
Q 030078 165 IAAKYRATGTTPKKLLG 181 (183)
Q Consensus 165 kA~k~R~TGk~P~s~~g 181 (183)
-+.++|+.|.+|.-+.|
T Consensus 16 ~~r~lRr~G~vPaViYG 32 (94)
T d1dfup_ 16 ASRRLRAANKFPAIIYG 32 (94)
T ss_dssp HHHHHHHTTEEEEEEEC
T ss_pred HHHHHHHcCCccEEEEC
Confidence 46789999999987654
No 3
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId: 6239]}
Probab=4.22 E-value=3.6e+02 Score=16.07 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=18.5
Q ss_pred hhhHHHHHHHHHHHhhcCCCCCC
Q 030078 156 GEDVLKAEEIAAKYRATGTTPKK 178 (183)
Q Consensus 156 ~ee~~Ka~EkA~k~R~TGk~P~s 178 (183)
..++.++-|--.++.++|.+|..
T Consensus 3 ~rDv~RaieLle~Lq~sgevp~~ 25 (50)
T d1zl8a1 3 ERDVQRILELMEHVQKTGEVNNA 25 (50)
T ss_dssp HHHHHHHHHHHHHHGGGSSSTHH
T ss_pred hhHHHHHHHHHHHHHHcCCCChH
Confidence 35677788888999999999854
No 4
>d1llaa1 a.85.1.1 (A:2-109) Hemocyanin, N-terminal domain {Horseshoe crab (Limulus polyphemus) [TaxId: 6850]}
Probab=3.85 E-value=1.7e+02 Score=19.84 Aligned_cols=16 Identities=19% Similarity=0.673 Sum_probs=12.4
Q ss_pred HHhhcCCCCCC-CCCCC
Q 030078 168 KYRATGTTPKK-LLGCF 183 (183)
Q Consensus 168 k~R~TGk~P~s-~~gCF 183 (183)
+++..|.+|+. .|+||
T Consensus 32 ~l~~~g~Lpr~~~FS~f 48 (108)
T d1llaa1 32 RLKNVGKLQPGAIFSCF 48 (108)
T ss_dssp GGGGCCCSCTTSCCCSS
T ss_pred HHhhCCcCCCCCccccC
Confidence 57788999977 56776
No 5
>d1tnsa_ a.6.1.7 (A:) mu transposase, DNA-binding domain {Bacteriophage mu [TaxId: 10677]}
Probab=3.74 E-value=2.7e+02 Score=17.59 Aligned_cols=20 Identities=35% Similarity=0.403 Sum_probs=13.6
Q ss_pred HHHHHHHhhcCCCCCCCCCCC
Q 030078 163 EEIAAKYRATGTTPKKLLGCF 183 (183)
Q Consensus 163 ~EkA~k~R~TGk~P~s~~gCF 183 (183)
.-++..+.+.|.+-.+ .|||
T Consensus 56 ~~q~~l~~~~~~~~~s-~~~f 75 (76)
T d1tnsa_ 56 EAKAALLLRQGEIETS-LGYF 75 (76)
T ss_dssp HHHHHHHHHTSSCSSS-STTC
T ss_pred HHHHHHHHhccccccc-cccc
Confidence 3455666777888555 6888
No 6
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.10 E-value=4.2e+02 Score=16.12 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHhhcCCCCCC
Q 030078 157 EDVLKAEEIAAKYRATGTTPKK 178 (183)
Q Consensus 157 ee~~Ka~EkA~k~R~TGk~P~s 178 (183)
.++.++-|--.++.++|.+|..
T Consensus 5 rDv~RaieLle~LQ~~gevp~~ 26 (57)
T d1y74a1 5 RDVSRAVELLERLQRSGELPPQ 26 (57)
T ss_dssp HHHHHHHHHHHHHHHHTCSCHH
T ss_pred HHHHHHHHHHHHHHHcCCCChH
Confidence 4567778888899999999854
No 7
>d1t92a_ d.24.1.3 (A:) Pullulanase secretion protein PulG {Klebsiella pneumoniae [TaxId: 573]}
Probab=3.04 E-value=6.5e+02 Score=16.19 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 030078 106 SKKASLEAKLKKIEEQLERKKA 127 (183)
Q Consensus 106 ~qKAKAEA~mrK~E~kLEkkRA 127 (183)
-+..++.++|+.|+.-|+.-+.
T Consensus 6 Ak~~~a~~di~~i~~aL~~Y~~ 27 (108)
T d1t92a_ 6 ADRQKVVSDLVALEGALDMYKL 27 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777788888877766554
No 8
>d2dj7a2 g.39.1.3 (A:8-43) Actin-binding LIM protein 3, abLIM-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.91 E-value=2.1e+02 Score=16.11 Aligned_cols=7 Identities=43% Similarity=1.127 Sum_probs=0.0
Q ss_pred CCCCCCC
Q 030078 176 PKKLLGC 182 (183)
Q Consensus 176 P~s~~gC 182 (183)
|+.|.||
T Consensus 8 ~~~CagC 14 (36)
T d2dj7a2 8 PSHCAGC 14 (36)
T ss_dssp CSCCTTT
T ss_pred Ccccccc
No 9
>d1k78a2 a.4.1.5 (A:82-142) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.89 E-value=2.1e+02 Score=17.81 Aligned_cols=20 Identities=15% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHhHHhHHHHH
Q 030078 85 EKTKAENKAQKKLSAVAAWE 104 (183)
Q Consensus 85 EkaK~~~R~~keeakI~aWE 104 (183)
+.-+....|+++.-.|-+||
T Consensus 13 ~V~~kI~~yK~enP~iFaWE 32 (61)
T d1k78a2 13 KVVEKIAEYKRQNPTMFAWE 32 (61)
T ss_dssp HHHHHHHHHHHHCTTCCHHH
T ss_pred HHHHHHHHHHhcCCcccHHH
No 10
>d2c0sa1 a.30.7.1 (A:1-57) Hypothetical protein BAS4809, C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Probab=2.86 E-value=5.2e+02 Score=15.64 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030078 115 LKKIEEQLERKKAEYAE 131 (183)
Q Consensus 115 mrK~E~kLEkkRA~a~E 131 (183)
|++++..+|.+|-+..+
T Consensus 3 ~~~L~~~IE~KK~eLi~ 19 (57)
T d2c0sa1 3 VTKLNDRIEAKKKELIY 19 (57)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Done!