Query 030079
Match_columns 183
No_of_seqs 131 out of 795
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 13:02:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030079.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030079hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 1.1E-39 3.8E-44 265.0 10.1 107 2-108 44-170 (174)
2 1ut7_A No apical meristem prot 100.0 1.4E-39 4.8E-44 263.6 9.2 108 2-109 46-168 (171)
3 2lic_A Vitellogenin; lipid tra 17.8 46 0.0016 19.3 1.0 16 139-154 11-26 (35)
4 3alz_B CDW150; viral protein-r 13.0 47 0.0016 25.5 0.2 9 20-28 114-122 (149)
5 3pp4_P B-lymphocyte antigen CD 10.6 98 0.0033 17.0 1.0 9 9-17 1-9 (25)
6 2oh5_A Polyhedrin, C-polyhedri 9.6 2.6E+02 0.0089 22.3 3.5 27 36-62 140-167 (248)
7 2zvv_Y Cyclin-dependent kinase 6.5 2.2E+02 0.0077 15.5 1.3 8 58-65 16-23 (26)
8 2ygn_A WIF-1, WNT inhibitory f 6.0 1.4E+02 0.0047 23.2 0.4 11 170-180 53-63 (156)
9 2h7a_A Hypothetical protein YC 4.5 2.8E+02 0.0096 20.3 1.2 12 98-109 13-24 (110)
10 2y9w_C Lectin-like fold protei 4.4 8.5E+02 0.029 17.8 3.8 18 64-81 41-58 (150)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1.1e-39 Score=264.98 Aligned_cols=107 Identities=24% Similarity=0.559 Sum_probs=94.2
Q ss_pred CCcceecCCCCCCCCCCC------CCeEEEeee---------ecCCcccCCceeeeCcceEEeeCCeeEEEEEEEEEeeC
Q 030079 2 MSILTTIGPQIYLNCNVP------DGVWYLVCS---------KENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEG 66 (183)
Q Consensus 2 ~~vI~evDvy~~dPwdLp------~~~wYFFs~---------R~~R~t~~G~Wk~~G~~k~I~~~g~~VG~KktL~Fy~G 66 (183)
.++|+|+|||.+|||+|| +++|||||+ |+||+|++||||++|++++|.++|.+||+||+|+||.|
T Consensus 44 ~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g 123 (174)
T 3ulx_A 44 VPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAG 123 (174)
T ss_dssp SSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCEEETTEEEEECSCCEEECCSSSCCEEEEEEEEEES
T ss_pred cCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCceeecCCceEccCCCCcEEeeCCcEEEEEEEEEEecC
Confidence 478999999999999999 578999998 46899999999999999999998999999999999999
Q ss_pred cCCCCCccCeEEEeEEeCCccccC-----CCCCCCCeEEEEEEEcCC
Q 030079 67 QVPNERKTDWVMQEFRITQKRLYG-----DKKEEDSSSLCRVFLSGK 108 (183)
Q Consensus 67 ~~p~g~kT~WvMhEY~l~~~~~~~-----~~~~~~~~VLCrIy~K~~ 108 (183)
++|++.||+|+||||+|.+..... .....++|||||||+|+.
T Consensus 124 ~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K~~ 170 (174)
T 3ulx_A 124 KAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKN 170 (174)
T ss_dssp STTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEESCC
T ss_pred CCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEcCC
Confidence 999999999999999999875432 123568999999999975
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=1.4e-39 Score=263.64 Aligned_cols=108 Identities=24% Similarity=0.545 Sum_probs=92.2
Q ss_pred CCcceecCCCCCCCCCCC------CCeEEEeee---------ecCCcccCCceeeeCcceEEeeCCeeEEEEEEEEEeeC
Q 030079 2 MSILTTIGPQIYLNCNVP------DGVWYLVCS---------KENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEG 66 (183)
Q Consensus 2 ~~vI~evDvy~~dPwdLp------~~~wYFFs~---------R~~R~t~~G~Wk~~G~~k~I~~~g~~VG~KktL~Fy~G 66 (183)
.++|+++|||.+|||+|| +++|||||+ |+||+|++||||++|++++|..++.+||+||+|+||.|
T Consensus 46 ~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g 125 (171)
T 1ut7_A 46 LQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIG 125 (171)
T ss_dssp SCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEES
T ss_pred CCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCcccccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcC
Confidence 478999999999999998 679999998 56899999999999999999999999999999999999
Q ss_pred cCCCCCccCeEEEeEEeCCccccCCCCCCCCeEEEEEEEcCCC
Q 030079 67 QVPNERKTDWVMQEFRITQKRLYGDKKEEDSSSLCRVFLSGKQ 109 (183)
Q Consensus 67 ~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VLCrIy~K~~~ 109 (183)
++|++.||+|+||||+|............++|||||||+|+..
T Consensus 126 ~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~ 168 (171)
T 1ut7_A 126 KAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSS 168 (171)
T ss_dssp STTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC--
T ss_pred cCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCC
Confidence 9999999999999999998753222346789999999999864
No 3
>2lic_A Vitellogenin; lipid transport; HET: SEP; NMR {Apis mellifera}
Probab=17.77 E-value=46 Score=19.26 Aligned_cols=16 Identities=25% Similarity=0.150 Sum_probs=10.8
Q ss_pred CCCCCCCcceeecccc
Q 030079 139 KDKDDTRQVSIIRHEV 154 (183)
Q Consensus 139 ~~~~~~~~~s~~~~~~ 154 (183)
+.+.+++++||++.+.
T Consensus 11 rtdistssssisssee 26 (35)
T 2lic_A 11 RTDISTSSSSISSSEE 26 (35)
T ss_dssp SSSSCSCSSCCSTTCS
T ss_pred hhcccccccccccccc
Confidence 4566777788876654
No 4
>3alz_B CDW150; viral protein-receptor complex, six-bladed beta-propeller FO immunoglobulin fold, beta-sandwich, viral protein-membrane complex; HET: NAG; 4.51A {Saguinus oedipus}
Probab=13.00 E-value=47 Score=25.50 Aligned_cols=9 Identities=33% Similarity=0.874 Sum_probs=5.1
Q ss_pred CCeEEEeee
Q 030079 20 DGVWYLVCS 28 (183)
Q Consensus 20 ~~~wYFFs~ 28 (183)
++.|||-+-
T Consensus 114 dEGwYfmtl 122 (149)
T 3alz_B 114 DEGWYFMTL 122 (149)
T ss_dssp GCEEEEEEE
T ss_pred cCceEEEEE
Confidence 455666654
No 5
>3pp4_P B-lymphocyte antigen CD20; antibody FAB fragment IG-domain, cyclic peptide, antib antigen, immune system; 1.60A {Homo sapiens} PDB: 3bky_P 2osl_P
Probab=10.58 E-value=98 Score=16.98 Aligned_cols=9 Identities=11% Similarity=-0.241 Sum_probs=5.9
Q ss_pred CCCCCCCCC
Q 030079 9 GPQIYLNCN 17 (183)
Q Consensus 9 Dvy~~dPwd 17 (183)
|||.|+|..
T Consensus 1 nIynCE~a~ 9 (25)
T 3pp4_P 1 NIYNCEPAN 9 (26)
T ss_dssp -CCCCSCSS
T ss_pred CccccccCC
Confidence 678888854
No 6
>2oh5_A Polyhedrin, C-polyhedrin; beta barrel, intracellular crystal, nucleotide binding, STRU protein, RNA binding protein; HET: GTP ATP CTP; 1.98A {Bombyx mori cypovirus 1} PDB: 2oh6_A* 2oh7_A*
Probab=9.56 E-value=2.6e+02 Score=22.28 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=21.5
Q ss_pred CCceeeeCc-ceEEeeCCeeEEEEEEEE
Q 030079 36 HGQWRAKGE-TCEIFSNSYIIGWRTTLE 62 (183)
Q Consensus 36 ~G~Wk~~G~-~k~I~~~g~~VG~KktL~ 62 (183)
.--|.++|- -+.|...|++||+--.|.
T Consensus 140 shpweatgikyrki~~dgeivgyshyfe 167 (248)
T 2oh5_A 140 SHPWEATGIKYRKIKRDGEIVGYSHYFE 167 (248)
T ss_dssp CCSCBCCGGGCEEEEETTEEEEEEEEEE
T ss_pred cCCccccCceEEEeeecceEeeeeeeee
Confidence 356999995 488999999999976654
No 7
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=6.47 E-value=2.2e+02 Score=15.47 Aligned_cols=8 Identities=25% Similarity=0.347 Sum_probs=4.0
Q ss_pred EEEEEEee
Q 030079 58 RTTLEFFE 65 (183)
Q Consensus 58 KktL~Fy~ 65 (183)
||.|+|+.
T Consensus 16 KRRlvf~~ 23 (26)
T 2zvv_Y 16 KRRLIFSX 23 (26)
T ss_pred hceEEEEe
Confidence 45555554
No 8
>2ygn_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2d3j_A
Probab=6.00 E-value=1.4e+02 Score=23.20 Aligned_cols=11 Identities=36% Similarity=0.878 Sum_probs=9.6
Q ss_pred hhhhheeeeee
Q 030079 170 ISCLNFVWFSL 180 (183)
Q Consensus 170 ~~~~~~~~~~~ 180 (183)
|++|||.|.++
T Consensus 53 I~~l~FTW~s~ 63 (156)
T 2ygn_A 53 IHSMNFTWQAA 63 (156)
T ss_dssp CSEEEEEEEEC
T ss_pred cceEEEEEecC
Confidence 78999999985
No 9
>2h7a_A Hypothetical protein YCGL; mixed alpha/beta/alpha sandwich structure, 3-layer (alpha/BE sandwich, beta-sheet layer antiparallel 3124 topology; NMR {Escherichia coli} SCOP: d.350.1.1
Probab=4.53 E-value=2.8e+02 Score=20.26 Aligned_cols=12 Identities=33% Similarity=0.711 Sum_probs=9.8
Q ss_pred eEEEEEEEcCCC
Q 030079 98 SSLCRVFLSGKQ 109 (183)
Q Consensus 98 ~VLCrIy~K~~~ 109 (183)
.-+|-||+++++
T Consensus 13 ~mlC~IYkS~KK 24 (110)
T 2h7a_A 13 SMFCVIYRSSKR 24 (110)
T ss_dssp CCCEEEEEETTS
T ss_pred eEEEEEEecCCC
Confidence 379999998765
No 10
>2y9w_C Lectin-like fold protein, polyphenol oxidase; oxidoreductase, copper-containing, pigmentation, type-3 COPP protein; HET: PGE; 2.30A {Agaricus bisporus} PDB: 2y9x_E
Probab=4.35 E-value=8.5e+02 Score=17.80 Aligned_cols=18 Identities=17% Similarity=0.802 Sum_probs=12.7
Q ss_pred eeCcCCCCCccCeEEEeE
Q 030079 64 FEGQVPNERKTDWVMQEF 81 (183)
Q Consensus 64 y~G~~p~g~kT~WvMhEY 81 (183)
+.-..|.....+|++|.|
T Consensus 41 fdqstpgqdadrwlihny 58 (150)
T 2y9w_C 41 FDQSTPGQDADRWLIHNY 58 (150)
T ss_dssp EESCCCSTTTTCEEEEEE
T ss_pred EcCCCCCCcchhhhhhhc
Confidence 343455556789999988
Done!