BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030081
         (183 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2HUO|A Chain A, Crystal Structure Of Mouse Myo-Inositol Oxygenase In
           Complex With Substrate
 pdb|3BXD|A Chain A, Crystal Structure Of Mouse Myo-Inositol Oxygenase
           (Re-Refined)
          Length = 289

 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/128 (46%), Positives = 82/128 (64%), Gaps = 4/128 (3%)

Query: 35  PQTNSFGHTFRDYDAEGERQEGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECC 94
           P+      +FR+Y   G   + V   Y++ H +QT DFV + R +YG  +  +M+I E  
Sbjct: 23  PEMAKSKDSFRNY-TSGPLLDRVFTTYKLMHTHQTVDFVSRKRIQYGSFSYKKMTIMEAV 81

Query: 95  ELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGL 154
            +L+D+VDESDPD+D P   H  QTAE IRK +PD+DW HL GL+HDLGK++ L    G 
Sbjct: 82  GMLDDLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGKIMAL---WGE 138

Query: 155 PQWAVVGE 162
           PQWAVVG+
Sbjct: 139 PQWAVVGD 146


>pdb|2IBN|A Chain A, Crystal Structure Of Human Myo-Inositol Oxygenase (Miox)
          Length = 246

 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/102 (49%), Positives = 67/102 (65%), Gaps = 6/102 (5%)

Query: 61  YRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTA 120
           Y++ H +QT DFV+    ++G  +  + ++ E  +LL+ +VDESD   D P   H  QTA
Sbjct: 9   YKLXHTHQTVDFVRSKHAQFGGFSYKKXTVXEAVDLLDGLVDESD---DFPNSFHAFQTA 65

Query: 121 EAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGE 162
           E IRK +PD+DW HL GL+HDLGKVL L    G PQWAVVG+
Sbjct: 66  EGIRKAHPDKDWFHLVGLLHDLGKVLAL---FGEPQWAVVGD 104


>pdb|2IBN|B Chain B, Crystal Structure Of Human Myo-Inositol Oxygenase (Miox)
          Length = 240

 Score = 94.0 bits (232), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/102 (47%), Positives = 65/102 (63%), Gaps = 9/102 (8%)

Query: 61  YRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTA 120
           Y++ H +QT DFV+    ++G  +  + ++ E  +LL+ +VDES      P   H  QTA
Sbjct: 9   YKLXHTHQTVDFVRSKHAQFGGFSYKKXTVXEAVDLLDGLVDES------PNSFHAFQTA 62

Query: 121 EAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGE 162
           E IRK +PD+DW HL GL+HDLGKVL L    G PQWAVVG+
Sbjct: 63  EGIRKAHPDKDWFHLVGLLHDLGKVLAL---FGEPQWAVVGD 101


>pdb|2GT1|A Chain A, E. Coli Heptosyltransferase Waac.
 pdb|2GT1|B Chain B, E. Coli Heptosyltransferase Waac
          Length = 326

 Score = 26.9 bits (58), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 125 KDYPDEDWLHLTGLIHDLGKVLNLP 149
           K +P+E W  L GL+ D G  + LP
Sbjct: 192 KHWPEEHWRELIGLLADSGIRIKLP 216


>pdb|2H1F|A Chain A, E. Coli Heptosyltransferase Waac With Adp
 pdb|2H1F|B Chain B, E. Coli Heptosyltransferase Waac With Adp
 pdb|2H1H|A Chain A, E. Coli Heptosyltransferase Waac With Adp-2-Deoxy-2-Fluoro
           Heptose
 pdb|2H1H|B Chain B, E. Coli Heptosyltransferase Waac With Adp-2-Deoxy-2-Fluoro
           Heptose
          Length = 334

 Score = 26.9 bits (58), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 125 KDYPDEDWLHLTGLIHDLGKVLNLP 149
           K +P+E W  L GL+ D G  + LP
Sbjct: 192 KHWPEEHWRELIGLLADSGIRIKLP 216


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.140    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,939,977
Number of Sequences: 62578
Number of extensions: 260676
Number of successful extensions: 732
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 719
Number of HSP's gapped (non-prelim): 12
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)