Query 030081
Match_columns 183
No_of_seqs 114 out of 194
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 13:05:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030081.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030081hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2huo_A Inositol oxygenase; pro 100.0 1.3E-67 4.5E-72 460.0 11.1 149 27-179 10-175 (289)
2 2ibn_A Inositol oxygenase; red 100.0 1.3E-55 4.5E-60 378.8 9.2 122 55-179 3-136 (250)
3 2o08_A BH1327 protein; putativ 95.9 0.005 1.7E-07 48.1 3.2 53 87-146 1-57 (188)
4 2ogi_A Hypothetical protein SA 95.5 0.0076 2.6E-07 47.6 3.0 53 87-146 9-65 (196)
5 3ccg_A HD superfamily hydrolas 95.5 0.005 1.7E-07 48.2 1.9 53 88-147 3-59 (190)
6 3i7a_A Putative metal-dependen 92.4 0.14 4.9E-06 42.0 4.6 69 80-148 69-165 (281)
7 3hc1_A Uncharacterized HDOD do 91.9 0.13 4.4E-06 42.8 3.9 67 82-148 74-160 (305)
8 3b57_A LIN1889 protein; Q92AN1 90.9 0.16 5.4E-06 40.4 3.3 56 92-147 9-65 (209)
9 2qgs_A Protein Se1688; alpha-h 90.2 0.19 6.5E-06 40.5 3.2 54 92-145 9-64 (225)
10 3ljx_A MMOQ response regulator 89.9 0.26 8.9E-06 40.8 3.9 67 82-148 63-150 (288)
11 3dto_A BH2835 protein; all alp 89.7 0.26 9E-06 40.4 3.7 57 90-146 7-64 (223)
12 3djb_A Hydrolase, HD family; a 89.6 0.19 6.6E-06 41.1 2.9 57 90-146 7-64 (223)
13 2pjq_A Uncharacterized protein 89.0 0.29 9.8E-06 39.7 3.4 59 88-146 10-69 (231)
14 3m1t_A Putative phosphohydrola 88.9 0.22 7.5E-06 40.9 2.7 66 82-148 62-146 (275)
15 1vqr_A Hypothetical protein CJ 86.8 0.31 1.1E-05 40.2 2.4 69 80-148 76-166 (297)
16 3sk9_A Putative uncharacterize 86.6 0.26 9E-06 41.6 1.9 42 110-153 24-85 (265)
17 2pq7_A Predicted HD superfamil 86.6 0.55 1.9E-05 37.1 3.6 57 90-146 15-72 (220)
18 3kq5_A Hypothetical cytosolic 81.6 0.45 1.5E-05 43.3 1.2 37 110-146 74-119 (393)
19 3tm8_A BD1817, uncharacterized 80.3 1.5 5.2E-05 37.1 4.0 39 109-147 164-210 (328)
20 3mem_A Putative signal transdu 71.5 1.1 3.9E-05 39.7 0.9 68 81-148 231-323 (457)
21 3m5f_A Metal dependent phospho 70.6 2.7 9.2E-05 35.9 3.0 38 110-147 15-73 (244)
22 3nqw_A CG11900; stringent resp 69.6 5.2 0.00018 31.7 4.3 53 90-142 9-64 (179)
23 3nr1_A HD domain-containing pr 67.9 7.1 0.00024 30.9 4.8 34 109-142 28-62 (178)
24 3gw7_A Uncharacterized protein 64.9 3.3 0.00011 34.3 2.4 42 104-145 21-63 (239)
25 2hek_A Hypothetical protein; p 64.7 4.3 0.00015 35.6 3.2 39 110-148 49-92 (371)
26 2cqz_A 177AA long hypothetical 61.4 2.6 8.7E-05 33.0 1.0 37 110-146 31-76 (177)
27 1vj7_A Bifunctional RELA/SPOT; 55.7 8.7 0.0003 34.3 3.6 52 90-142 28-79 (393)
28 1ynb_A Hypothetical protein AF 53.5 5.5 0.00019 31.9 1.7 36 110-146 37-80 (173)
29 2paq_A 5'-deoxynucleotidase YF 49.8 6.1 0.00021 31.7 1.5 38 110-147 30-77 (201)
30 2dqb_A Deoxyguanosinetriphosph 49.5 6.5 0.00022 34.9 1.7 18 129-146 97-114 (376)
31 2q14_A Phosphohydrolase; BT420 44.1 9.8 0.00034 34.1 2.0 15 132-146 88-102 (410)
32 3mzo_A LIN2634 protein; HD-dom 43.8 40 0.0014 27.4 5.5 37 110-146 29-74 (216)
33 3aql_A Poly(A) polymerase; tra 42.3 9.3 0.00032 33.9 1.6 36 111-146 266-303 (415)
34 3u1n_A SAM domain and HD domai 41.7 17 0.00058 34.1 3.3 14 133-146 101-114 (528)
35 4dmb_A HD domain-containing pr 41.2 9.5 0.00033 31.2 1.4 37 110-146 44-83 (204)
36 2gz4_A Hypothetical protein AT 33.4 27 0.00093 28.7 2.9 61 86-146 27-91 (207)
37 1ou5_A TRNA CCA-adding enzyme, 31.9 20 0.00067 32.1 2.0 93 50-147 208-322 (448)
38 3irh_A HD domain protein; phos 31.5 20 0.00069 33.1 2.0 14 133-146 127-140 (480)
39 4a4a_A Alpha-N-acetylglucosami 31.2 65 0.0022 32.1 5.6 77 71-158 458-547 (914)
40 1xx7_A Oxetanocin-like protein 28.1 40 0.0014 26.8 3.0 38 109-146 35-81 (184)
41 2ksn_A Ubiquitin domain-contai 23.9 68 0.0023 25.4 3.6 47 69-126 34-83 (137)
42 3ka5_A Ribosome-associated pro 22.0 50 0.0017 22.9 2.2 19 82-100 7-25 (65)
43 3k2t_A LMO2511 protein; lister 21.6 44 0.0015 22.4 1.8 18 83-100 8-25 (57)
No 1
>2huo_A Inositol oxygenase; protein-substrate complex, HD domain fold, oxidoreductase; HET: INS; 2.00A {Mus musculus} SCOP: a.211.1.4 PDB: 3bxd_A*
Probab=100.00 E-value=1.3e-67 Score=459.98 Aligned_cols=149 Identities=43% Similarity=0.725 Sum_probs=124.8
Q ss_pred eecCC-CCCCCCc----cccccCCCCccchhhhHHHHHHHHHhhhhhhHHHHHHHHHHhcCCCCCcCCHHHHHHHhhhcc
Q 030081 27 SLDGG-FLVPQTN----SFGHTFRDYDAEGERQEGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVV 101 (183)
Q Consensus 27 v~dgg-f~~p~~~----~~~~~FR~Y~~~~~r~~~V~~fYr~~H~~QTvdFV~~~~~~~~~~~~~~MtI~EA~e~Ln~lV 101 (183)
.+|++ |.+|+.+ +++++||||++ +.+++||++|||+||++|||+||++||++|++|+|++|||||||++||+||
T Consensus 10 ~~d~~~~~~p~~~~~~~k~~~~FR~Y~~-~~~~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MtIweA~e~Ln~Lv 88 (289)
T 2huo_A 10 GPDPSLVYRPDVDPEMAKSKDSFRNYTS-GPLLDRVFTTYKLMHTHQTVDFVSRKRIQYGSFSYKKMTIMEAVGMLDDLV 88 (289)
T ss_dssp ----------------------CCCSSS-CSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTTCCSCEECHHHHHHHGGGCC
T ss_pred cCCccceeccCccccccccHHHhhCccc-chhHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhc
Confidence 37888 6888877 77889999997 457899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcchHHHHHHHHHHHHhcCCCCCchhhhhhhhcccccccccCCCCCCCeeEecccCcC---------CCC---
Q 030081 102 DESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGELHFS---------FPP--- 169 (183)
Q Consensus 102 DeSDPD~dlpqi~H~lQTAEaIR~d~p~pDW~qLtGLIHDLGKvl~l~~fg~epQWaVVGDTF~~---------~~~--- 169 (183)
||||||+|+|||+||||||||||++||++||||||||||||||||++ +++|||+|||||||= ||.
T Consensus 89 DeSDPD~dl~qi~H~lQTAEaiR~d~pp~dW~qLtGLiHDLGKvl~~---~~epQW~vvGDTfpVGC~f~~~iv~~e~~F 165 (289)
T 2huo_A 89 DESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGKIMAL---WGEPQWAVVGDTFPVGCRPQASVVFCDSTF 165 (289)
T ss_dssp CSSCTTCCSCHHHHHHHHHHHHHHHCTTCHHHHHHHHHTTGGGGGGG---GTCCGGGTSSCCCBSSSCCCTTSTTTTTSC
T ss_pred CCcCCccchhHHHHHHHHHHHHHHhCCCcchheeeeecccchhhhhh---cCCCceeeecCcceeccccccccccchhhc
Confidence 99999999999999999999999999877999999999999999987 469999999999953 666
Q ss_pred CCCCCCCccc
Q 030081 170 PPNPNFLSKI 179 (183)
Q Consensus 170 ~~np~~~~~~ 179 (183)
+.|||+.||+
T Consensus 166 ~~NpD~~~p~ 175 (289)
T 2huo_A 166 QDNPDLQDPR 175 (289)
T ss_dssp TTCGGGGSTT
T ss_pred cCCCCCCCcc
Confidence 8999999995
No 2
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4
Probab=100.00 E-value=1.3e-55 Score=378.83 Aligned_cols=122 Identities=47% Similarity=0.778 Sum_probs=112.3
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhcCCCCCcCCHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHhcCCCCCchh
Q 030081 55 EGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLH 134 (183)
Q Consensus 55 ~~V~~fYr~~H~~QTvdFV~~~~~~~~~~~~~~MtI~EA~e~Ln~lVDeSDPD~dlpqi~H~lQTAEaIR~d~p~pDW~q 134 (183)
+||++|||+||++|||+||++||++|++|+|++|||||||++||+||||||||+++|||+|||||||+||++||+.||||
T Consensus 3 ~~V~~~Yr~~h~~QTv~fv~~~~~~~~~~~~~~mti~ea~~~Ln~lvDeSDPD~~v~ql~HaLQTAe~ar~dg~d~dw~~ 82 (250)
T 2ibn_A 3 DRVFTTYKLMHTHQTVDFVRSKHAQFGGFSYKKMTVMEAVDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFH 82 (250)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTTCCSCEECHHHHHHHGGGCCCTTC---CCCHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhcCCcCCCCcccHHHHHHHHHHHHHHhCcChhHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999998779999
Q ss_pred hhhhhhcccccccccCCCCCCCeeEecccCcC---------CCC---CCCCCCCccc
Q 030081 135 LTGLIHDLGKVLNLPSFGGLPQWAVVGELHFS---------FPP---PPNPNFLSKI 179 (183)
Q Consensus 135 LtGLIHDLGKvl~l~~fg~epQWaVVGDTF~~---------~~~---~~np~~~~~~ 179 (183)
|+||||||||+|++ +++|||+||||||+- ||. +.|||+.||+
T Consensus 83 laaLlHDLGkll~~---~~~~qW~vvgdtfpvGc~f~~~iv~~e~~f~~NpD~~~~~ 136 (250)
T 2ibn_A 83 LVGLLHDLGKVLAL---FGEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPR 136 (250)
T ss_dssp HHHHHTTGGGHHHH---TTCCGGGTSSCCCBSSSCCCTTSTTHHHHCTTCGGGGCTT
T ss_pred HHHHHhccHhhhcc---cCCcchhhccCcccccCccchhhcchhhcccCCCCCCCcc
Confidence 99999999999987 468999999999954 443 7999999995
No 3
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=95.86 E-value=0.005 Score=48.09 Aligned_cols=53 Identities=19% Similarity=0.226 Sum_probs=40.7
Q ss_pred cCCHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHh----cCCCCCchhhhhhhhcccccc
Q 030081 87 EMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRK----DYPDEDWLHLTGLIHDLGKVL 146 (183)
Q Consensus 87 ~MtI~EA~e~Ln~lVDeSDPD~dlpqi~H~lQTAEaIR~----d~p~pDW~qLtGLIHDLGKvl 146 (183)
.|++.++.++|...+++ ....|.+.+|...+. -+-+++-.-++||+||+||+.
T Consensus 1 ~~~~~~~~~~l~~~l~~-------~~~~Hs~~Va~~A~~lA~~~g~~~~~~~~agLLHDIGk~~ 57 (188)
T 2o08_A 1 GMNRGKALQLVKPHLTE-------HRYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAKFR 57 (188)
T ss_dssp CCCHHHHHHHHGGGCCH-------HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTS
T ss_pred CCCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 38899999999998753 478899888765543 233456688999999999985
No 4
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=95.52 E-value=0.0076 Score=47.58 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=41.1
Q ss_pred cCCHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHh----cCCCCCchhhhhhhhcccccc
Q 030081 87 EMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRK----DYPDEDWLHLTGLIHDLGKVL 146 (183)
Q Consensus 87 ~MtI~EA~e~Ln~lVDeSDPD~dlpqi~H~lQTAEaIR~----d~p~pDW~qLtGLIHDLGKvl 146 (183)
.|++.++.++|...+++ ....|.+.+|...+. -+-+++-..++||+||+||+.
T Consensus 9 ~~~~~~~~~~l~~~l~~-------~~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDIGK~~ 65 (196)
T 2ogi_A 9 GLDRTELLSKVRHMMSD-------KRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKEL 65 (196)
T ss_dssp SSCHHHHHHHHHTTSCH-------HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTC
T ss_pred cccHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHcCCcC
Confidence 38999999999998763 377899888765543 233456788999999999985
No 5
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=95.48 E-value=0.005 Score=48.18 Aligned_cols=53 Identities=23% Similarity=0.288 Sum_probs=40.8
Q ss_pred CCHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHh----cCCCCCchhhhhhhhccccccc
Q 030081 88 MSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRK----DYPDEDWLHLTGLIHDLGKVLN 147 (183)
Q Consensus 88 MtI~EA~e~Ln~lVDeSDPD~dlpqi~H~lQTAEaIR~----d~p~pDW~qLtGLIHDLGKvl~ 147 (183)
|++.++.++|...+++ ....|.+.+|...+. -+-+++-..++||+||+||+..
T Consensus 3 ~~~~~~~~~l~~~~~~-------~~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDiGk~~~ 59 (190)
T 3ccg_A 3 WSYDKITDYLMNNLGE-------KRYKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCAKKLP 59 (190)
T ss_dssp CCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTSC
T ss_pred CCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC
Confidence 7888999999988753 478898888765543 2335667889999999999863
No 6
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B}
Probab=92.37 E-value=0.14 Score=41.98 Aligned_cols=69 Identities=14% Similarity=0.123 Sum_probs=44.1
Q ss_pred hcCCCCCcCCHHHHHHHhh--------------hccCCCCCCCC---cchHHHHHHHHHHHH---h--------cCCCCC
Q 030081 80 YGKLNRVEMSIWECCELLN--------------DVVDESDPDLD---EPQIEHLLQTAEAIR---K--------DYPDED 131 (183)
Q Consensus 80 ~~~~~~~~MtI~EA~e~Ln--------------~lVDeSDPD~d---lpqi~H~lQTAEaIR---~--------d~p~pD 131 (183)
|.++.+.--||.+|+-+|- .+.+...+-.. -....|.+.+|...+ + ...+++
T Consensus 69 ~~~~~~~i~si~~Av~~LG~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~hs~~vA~~a~~la~~~~~~~~~~~~~~~ 148 (281)
T 3i7a_A 69 LYSRGVPAENINSAVTRIGLTQIKSIATSVAMEQLFISTNEMVWEVMDEVWRTSIDVTAAACSLLQIYNKKHPGSGLNYD 148 (281)
T ss_dssp TTCSSSCCCSHHHHHHHHCTTTHHHHHHHHTTGGGSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCHH
T ss_pred HhCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCHH
Confidence 4456677789999988754 22333322211 125678888765433 2 234567
Q ss_pred chhhhhhhhcccccccc
Q 030081 132 WLHLTGLIHDLGKVLNL 148 (183)
Q Consensus 132 W~qLtGLIHDLGKvl~l 148 (183)
-+-++||+||+||+..+
T Consensus 149 ~~~laGLLHdiGkl~l~ 165 (281)
T 3i7a_A 149 TLTLAGLVHNIGALPVL 165 (281)
T ss_dssp HHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHHHCCHHHHH
Confidence 88999999999998753
No 7
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=91.95 E-value=0.13 Score=42.84 Aligned_cols=67 Identities=22% Similarity=0.269 Sum_probs=44.1
Q ss_pred CCCCCcCCHHHHHHHhh--------------hccCCCCCCCC-cchHHHHHHHHHHHHhc-----CCCCCchhhhhhhhc
Q 030081 82 KLNRVEMSIWECCELLN--------------DVVDESDPDLD-EPQIEHLLQTAEAIRKD-----YPDEDWLHLTGLIHD 141 (183)
Q Consensus 82 ~~~~~~MtI~EA~e~Ln--------------~lVDeSDPD~d-lpqi~H~lQTAEaIR~d-----~p~pDW~qLtGLIHD 141 (183)
++.+.--||.+|+-+|- ..........+ -....|.+.+|...+.- .++++-+-++||+||
T Consensus 74 ~~~~~I~si~~Av~~LG~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~hs~~va~~a~~la~~~~~~~~~~~~~agllHD 153 (305)
T 3hc1_A 74 SAARPISSIRDAVIYLGLDLLREAIFTCAIVDLFKTGKGPLNRSTLWAHSLGVARIAKLIAERTGFLNPVNVYVAGLLHD 153 (305)
T ss_dssp HTTSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSCHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHTTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 45677788999887754 11122212222 23478999988766542 235677899999999
Q ss_pred ccccccc
Q 030081 142 LGKVLNL 148 (183)
Q Consensus 142 LGKvl~l 148 (183)
+||+...
T Consensus 154 IGkl~l~ 160 (305)
T 3hc1_A 154 VGEVFIN 160 (305)
T ss_dssp HHHHHHH
T ss_pred hhHHHHH
Confidence 9999853
No 8
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=90.94 E-value=0.16 Score=40.36 Aligned_cols=56 Identities=14% Similarity=0.190 Sum_probs=32.7
Q ss_pred HHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHhc-CCCCCchhhhhhhhccccccc
Q 030081 92 ECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKD-YPDEDWLHLTGLIHDLGKVLN 147 (183)
Q Consensus 92 EA~e~Ln~lVDeSDPD~dlpqi~H~lQTAEaIR~d-~p~pDW~qLtGLIHDLGKvl~ 147 (183)
++.+.+.......|+.-++.-+.-.+..|..|.+. +.+++-+.+++|+||+||.-.
T Consensus 9 ~~~~~v~~~~~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~~v~~AAlLHDig~~~~ 65 (209)
T 3b57_A 9 SAKNWMHSHFENETTGHDWSHIKRVWKLSKEIQSKEGGDLFTIELAALFHDYSDIKL 65 (209)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHTTCCC---
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCcccC
Confidence 34444555554445555565555566677777663 457788999999999999753
No 9
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=90.16 E-value=0.19 Score=40.51 Aligned_cols=54 Identities=19% Similarity=0.302 Sum_probs=31.9
Q ss_pred HHHHHhhhccCCCCCCCCcchHHHHHHHHHHH-Hh-cCCCCCchhhhhhhhccccc
Q 030081 92 ECCELLNDVVDESDPDLDEPQIEHLLQTAEAI-RK-DYPDEDWLHLTGLIHDLGKV 145 (183)
Q Consensus 92 EA~e~Ln~lVDeSDPD~dlpqi~H~lQTAEaI-R~-d~p~pDW~qLtGLIHDLGKv 145 (183)
++.+.+.......++.-++.-+...+++|..| .+ .+.+++-+.+++|+||+||.
T Consensus 9 ~~~~~v~~~~~~~~~~H~~~H~~rV~~~a~~i~a~~~~~d~~~l~lAAlLHDigk~ 64 (225)
T 2qgs_A 9 KAYEYMKSFHQHDTTGHDIAHVERVYNNACYIAKRENITDTLVIELSSLLHDTVDS 64 (225)
T ss_dssp HHHHHHHHHTTTCSSCHHHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHcCCCC
Confidence 34444444444334433343333344455556 54 34578889999999999994
No 10
>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A 3p3q_A
Probab=89.89 E-value=0.26 Score=40.83 Aligned_cols=67 Identities=18% Similarity=0.214 Sum_probs=43.3
Q ss_pred CCCCCcCCHHHHHHHhh-----------hccCC--CCC--CCCc-chHHHHHHHHHHHHhc-----CCCCCchhhhhhhh
Q 030081 82 KLNRVEMSIWECCELLN-----------DVVDE--SDP--DLDE-PQIEHLLQTAEAIRKD-----YPDEDWLHLTGLIH 140 (183)
Q Consensus 82 ~~~~~~MtI~EA~e~Ln-----------~lVDe--SDP--D~dl-pqi~H~lQTAEaIR~d-----~p~pDW~qLtGLIH 140 (183)
++.+.--||.+|+.+|= .+.+. +.| ..+. ....|.+++|...|.- .++++-.-++||+|
T Consensus 63 ~~~~~I~si~~Av~~LG~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~hs~~~A~~a~~la~~~~~~~~~~~~~agLLh 142 (288)
T 3ljx_A 63 GTRRPVASVIDAIDLVGLPAVRQFALSLSLIDAHREGRCEAFDYAAYWQKSLARAVALQSITAQASTVAPKEAFTLGLLA 142 (288)
T ss_dssp -CCSCCCSHHHHHHHHCHHHHHHHHHGGGC----CTTSCTTSCHHHHHHHHHHHHHHHHHHHHTSSSSCHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 46677789999987653 11121 112 1222 2568999988866542 12567889999999
Q ss_pred cccccccc
Q 030081 141 DLGKVLNL 148 (183)
Q Consensus 141 DLGKvl~l 148 (183)
|+||++..
T Consensus 143 diGkl~l~ 150 (288)
T 3ljx_A 143 DVGRLALA 150 (288)
T ss_dssp THHHHHHH
T ss_pred hccHHHHH
Confidence 99999864
No 11
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=89.73 E-value=0.26 Score=40.38 Aligned_cols=57 Identities=18% Similarity=0.121 Sum_probs=37.1
Q ss_pred HHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHh-cCCCCCchhhhhhhhcccccc
Q 030081 90 IWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRK-DYPDEDWLHLTGLIHDLGKVL 146 (183)
Q Consensus 90 I~EA~e~Ln~lVDeSDPD~dlpqi~H~lQTAEaIR~-d~p~pDW~qLtGLIHDLGKvl 146 (183)
|..+.+.+.......|+.-++.-+.-.+.+|..|-+ .+-+++-+.+++|+||+||.-
T Consensus 7 i~~~~~~v~~~l~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AalLHDig~~k 64 (223)
T 3dto_A 7 LQSAEAWVKKQLMDEYSGHDWYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLIDDK 64 (223)
T ss_dssp HHHHHHHHHHTTTTC----CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSTTC--
T ss_pred HHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhccccc
Confidence 444555566666666677777777777778888744 345678899999999999974
No 12
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=89.64 E-value=0.19 Score=41.09 Aligned_cols=57 Identities=12% Similarity=0.211 Sum_probs=39.5
Q ss_pred HHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHhc-CCCCCchhhhhhhhcccccc
Q 030081 90 IWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKD-YPDEDWLHLTGLIHDLGKVL 146 (183)
Q Consensus 90 I~EA~e~Ln~lVDeSDPD~dlpqi~H~lQTAEaIR~d-~p~pDW~qLtGLIHDLGKvl 146 (183)
|..+.+.+.......|+.-++.-+.-.+.+|..|-+. +.+++-+.+++|+||+||.-
T Consensus 7 i~~~~~~v~~~l~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AAlLHDig~~k 64 (223)
T 3djb_A 7 IEKTITFVKHILEKDASGHDWYHIRRVHKMAISLSEQEGGNRFIIEMAALLHDVADEK 64 (223)
T ss_dssp HHHHHHHHHHHTTSSSCTTTHHHHHHHHHHHHHHHTTTCSCHHHHHHHHTTHHHHC--
T ss_pred HHHHHHHHHHHhhcCCCcCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhccccc
Confidence 3444455555555566666777777777788887554 45778899999999999954
No 13
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=89.03 E-value=0.29 Score=39.70 Aligned_cols=59 Identities=8% Similarity=0.051 Sum_probs=40.6
Q ss_pred CCHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHhc-CCCCCchhhhhhhhcccccc
Q 030081 88 MSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKD-YPDEDWLHLTGLIHDLGKVL 146 (183)
Q Consensus 88 MtI~EA~e~Ln~lVDeSDPD~dlpqi~H~lQTAEaIR~d-~p~pDW~qLtGLIHDLGKvl 146 (183)
+-|.++.+.+...+...++.-++.-+.-.++.|..|.+. +.+++-+.+++|+||+||.-
T Consensus 10 ~~i~~~~~~v~~~~~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~ll~lAAlLHDigk~k 69 (231)
T 2pjq_A 10 TQLTAIQTYALQKLAHDHSGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVIDDK 69 (231)
T ss_dssp HHHHHHHHHHHTSSTTCCSSCSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCccc
Confidence 335566666666666555666666666667777777663 45778899999999999953
No 14
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0
Probab=88.88 E-value=0.22 Score=40.92 Aligned_cols=66 Identities=15% Similarity=0.100 Sum_probs=41.3
Q ss_pred CCCCCcCCHHHHHHHhh--------------hccCCCCCCCCc-chHHHHHHHHHHHHh----cCCCCCchhhhhhhhcc
Q 030081 82 KLNRVEMSIWECCELLN--------------DVVDESDPDLDE-PQIEHLLQTAEAIRK----DYPDEDWLHLTGLIHDL 142 (183)
Q Consensus 82 ~~~~~~MtI~EA~e~Ln--------------~lVDeSDPD~dl-pqi~H~lQTAEaIR~----d~p~pDW~qLtGLIHDL 142 (183)
++.+.--||.+|+-+|= ..... .|..++ ....|.+.+|...+. -+.+++-.-++||+||+
T Consensus 62 ~~~~~i~si~~Av~~LG~~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~hs~~~a~~a~~la~~~~~~~~~~~~agLLhdi 140 (275)
T 3m1t_A 62 GCSREVGTIDDAVVRLGMQTLRTLVIASAVVGAVPK-VEGFDLADFWGNTFEVAIICQELAKRLGTLPEEAFTCGILHSI 140 (275)
T ss_dssp ----CCCSHHHHHHHHCHHHHHHHHHHHHHHHHCCC-CTTCCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHTTH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCccCHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 34556778888877653 12222 233332 356789888865543 34467888999999999
Q ss_pred cccccc
Q 030081 143 GKVLNL 148 (183)
Q Consensus 143 GKvl~l 148 (183)
||++..
T Consensus 141 Gkl~l~ 146 (275)
T 3m1t_A 141 GELLIV 146 (275)
T ss_dssp HHHHHH
T ss_pred cHHHHH
Confidence 999864
No 15
>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3
Probab=86.79 E-value=0.31 Score=40.15 Aligned_cols=69 Identities=22% Similarity=0.203 Sum_probs=41.5
Q ss_pred hcCCCCCcCCHHHHHHHhh-----hcc------CC--CCCC---CCc-chHHHHHHHHHHHHhcC-----CCCCchhhhh
Q 030081 80 YGKLNRVEMSIWECCELLN-----DVV------DE--SDPD---LDE-PQIEHLLQTAEAIRKDY-----PDEDWLHLTG 137 (183)
Q Consensus 80 ~~~~~~~~MtI~EA~e~Ln-----~lV------De--SDPD---~dl-pqi~H~lQTAEaIR~d~-----p~pDW~qLtG 137 (183)
|.++.+.--||.+|+.+|- +++ +. +++. .+. .-..|.+.+|..+++-. .+++-.-++|
T Consensus 76 ~~~~~~~i~si~~Av~~LG~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~hs~~va~~a~~la~~~~~~~~e~a~~aG 155 (297)
T 1vqr_A 76 YYGFTREITTINQVITLLGVGNIINIVMADSIRDNFKIDVSPYGLNTQNFLKTCNEEATFIANWLNDEDKKLSHLLVPCA 155 (297)
T ss_dssp GGTCTTCCCSHHHHHHHHCHHHHHHHHHCCCTTCCCCCCCGGGTCCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 3456666789999988774 111 11 1111 111 24567777666554422 2346677899
Q ss_pred hhhcccccccc
Q 030081 138 LIHDLGKVLNL 148 (183)
Q Consensus 138 LIHDLGKvl~l 148 (183)
|+||+||+...
T Consensus 156 LLHDIGkl~l~ 166 (297)
T 1vqr_A 156 MLLRLGIVIFS 166 (297)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHccHHHHH
Confidence 99999999853
No 16
>3sk9_A Putative uncharacterized protein TTHB187; crispr, CAS, HD domain, nuclease, hydrolase; 1.80A {Thermus thermophilus HB8} PDB: 3skd_A
Probab=86.65 E-value=0.26 Score=41.60 Aligned_cols=42 Identities=31% Similarity=0.413 Sum_probs=32.1
Q ss_pred cchHHHHHHHHHHHHhc----------------CCC----CCchhhhhhhhcccccccccCCCC
Q 030081 110 EPQIEHLLQTAEAIRKD----------------YPD----EDWLHLTGLIHDLGKVLNLPSFGG 153 (183)
Q Consensus 110 lpqi~H~lQTAEaIR~d----------------~p~----pDW~qLtGLIHDLGKvl~l~~fg~ 153 (183)
.|...|++-||+..+.- +.. ..|+.+.|++||+||.- +.|..
T Consensus 24 ~~L~~HllDvAava~~L~~~~~~~~r~~la~~~g~~~~~~~~~~~~~~~lHDiGK~~--~~fq~ 85 (265)
T 3sk9_A 24 HPLLAHMLDTAAVALAVLRMEPPRTRALYAEDWGLPEEGALAWAAALVGLHDLGKAS--PVFQA 85 (265)
T ss_dssp SBHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTSCHHHHHHHHHHHHTTTTGGGCS--GGGCC
T ss_pred ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccccc--HHHHH
Confidence 88999999999886651 211 36899999999999995 44553
No 17
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=86.58 E-value=0.55 Score=37.11 Aligned_cols=57 Identities=18% Similarity=0.124 Sum_probs=33.8
Q ss_pred HHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHhc-CCCCCchhhhhhhhcccccc
Q 030081 90 IWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKD-YPDEDWLHLTGLIHDLGKVL 146 (183)
Q Consensus 90 I~EA~e~Ln~lVDeSDPD~dlpqi~H~lQTAEaIR~d-~p~pDW~qLtGLIHDLGKvl 146 (183)
+.++.+.+.......++..++.-+......|..|-+. +.+++-+.++||+||+|+-.
T Consensus 15 ~~~~~~~v~~~~~~~~~~h~~~H~~rV~~~a~~la~~~~~d~~~l~~AaLLHDIg~~~ 72 (220)
T 2pq7_A 15 REILNIVREAFKDYDDPAHDISHTFRVMENASEIASREKCDLQKAIIAALLHDIKRPH 72 (220)
T ss_dssp HHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCCcc
Confidence 4445555555554444444444444444445555442 34667889999999999743
No 18
>3kq5_A Hypothetical cytosolic protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Coxiella burnetii}
Probab=81.60 E-value=0.45 Score=43.34 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=28.8
Q ss_pred cchHHHHHH-H---HHHHHhcCCCC-----Cchhhhhhhhcccccc
Q 030081 110 EPQIEHLLQ-T---AEAIRKDYPDE-----DWLHLTGLIHDLGKVL 146 (183)
Q Consensus 110 lpqi~H~lQ-T---AEaIR~d~p~p-----DW~qLtGLIHDLGKvl 146 (183)
=..++|.|. + |..|++.||.. +=+-..||+||+||++
T Consensus 74 GGLLeHtLerVa~~A~~l~~~YP~~~~~Er~~l~~aALLHDIGKl~ 119 (393)
T 3kq5_A 74 CSLMNEGLLRGVNSLNHYIQNHPEATPLERYALFSAGLLLEVAHAV 119 (393)
T ss_dssp THHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTTTTHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhccchhe
Confidence 347889999 5 78889999642 2456789999999997
No 19
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=80.34 E-value=1.5 Score=37.13 Aligned_cols=39 Identities=21% Similarity=0.156 Sum_probs=26.2
Q ss_pred CcchHHHHHHHHHHHHhc----CCCCCc----hhhhhhhhccccccc
Q 030081 109 DEPQIEHLLQTAEAIRKD----YPDEDW----LHLTGLIHDLGKVLN 147 (183)
Q Consensus 109 dlpqi~H~lQTAEaIR~d----~p~pDW----~qLtGLIHDLGKvl~ 147 (183)
|-....|.+.+|...+.- +-++++ +-++||+||+||+..
T Consensus 164 ~~~~~~Hs~~Va~la~~la~~lgl~~~~~~~~l~~aaLLHDIGk~~i 210 (328)
T 3tm8_A 164 DKTISHHGVTVSTLSIALAQKLGITDPKKTQLLTLGALLHDYGHHHS 210 (328)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTGGGTTC
T ss_pred CchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHhcCCcccC
Confidence 344678999887755432 223455 445999999999963
No 20
>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei}
Probab=71.45 E-value=1.1 Score=39.66 Aligned_cols=68 Identities=18% Similarity=0.193 Sum_probs=42.8
Q ss_pred cCCCCCcCCHHHHHH-Hhh--------------hccCCC-C-CCCCcchHHHHHHHHHHHHh---cC-----CCCCchhh
Q 030081 81 GKLNRVEMSIWECCE-LLN--------------DVVDES-D-PDLDEPQIEHLLQTAEAIRK---DY-----PDEDWLHL 135 (183)
Q Consensus 81 ~~~~~~~MtI~EA~e-~Ln--------------~lVDeS-D-PD~dlpqi~H~lQTAEaIR~---d~-----p~pDW~qL 135 (183)
.++.+.--||.+|+- +|= +....+ + +..--....|.+.+|..++. .. ++++-.-+
T Consensus 231 y~~~~~I~si~~Av~rlLG~~~v~~l~~~~~l~~~~~~~~~~~~~~~~~w~hs~~~A~~a~~LA~~~~~~~~~~~~~afl 310 (457)
T 3mem_A 231 YAAAGRVHSVHDAVSRVLGFDLVMNLAMGLALGRALKHPQDHPDGYVDYWQQAIWQAQSAGILASMMPRGQRPLFGLAYL 310 (457)
T ss_dssp TGGGCCCCCHHHHHHTTTCHHHHHHHHHHHHHHTTSCCCSCCCTTSCCHHHHHHHHHHHHHHHHHHSCGGGCCCHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHhcHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHH
Confidence 345667789999997 421 111211 1 11113568899988766543 21 34566889
Q ss_pred hhhhhcccccccc
Q 030081 136 TGLIHDLGKVLNL 148 (183)
Q Consensus 136 tGLIHDLGKvl~l 148 (183)
+||+||+||++..
T Consensus 311 aGLLhDIGkl~l~ 323 (457)
T 3mem_A 311 AGLLHNFGHLVLA 323 (457)
T ss_dssp HHHHTTTHHHHHH
T ss_pred HHHHHHhhHHHHH
Confidence 9999999999864
No 21
>3m5f_A Metal dependent phosphohydrolase; CAS3, prokaryotic immune system, HD-motif, structural genomics, PSI-2; 2.30A {Methanocaldococcus jannaschii} PDB: 3s4l_A
Probab=70.61 E-value=2.7 Score=35.92 Aligned_cols=38 Identities=16% Similarity=0.330 Sum_probs=25.9
Q ss_pred cchHHHHHHHHHHHHh---------------cCCC------CCchhhhhhhhccccccc
Q 030081 110 EPQIEHLLQTAEAIRK---------------DYPD------EDWLHLTGLIHDLGKVLN 147 (183)
Q Consensus 110 lpqi~H~lQTAEaIR~---------------d~p~------pDW~qLtGLIHDLGKvl~ 147 (183)
.+..+|..-+++.+++ .++. .+++-++|++||+||.--
T Consensus 15 eTL~EHt~dvL~~~e~Lk~~y~~sI~r~L~~~~i~Ld~e~~~~ll~~a~llHDiGKa~~ 73 (244)
T 3m5f_A 15 QSLIDHVNDMVKYWERIKYRYLKTIKRALEALNIKLDIEKVDEFMKILIKLHDIGKASK 73 (244)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCHHHHHHHHHHHHHHTTGGGGBH
T ss_pred CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhccccCHHHHHHHHHHHHHHcccccCCH
Confidence 3677888777775542 1111 256778999999999863
No 22
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}
Probab=69.58 E-value=5.2 Score=31.71 Aligned_cols=53 Identities=17% Similarity=0.324 Sum_probs=34.1
Q ss_pred HHHHHHHhhhccCCC-CCC-CCcchHHHHHHHHHHHHhcCCCCCc-hhhhhhhhcc
Q 030081 90 IWECCELLNDVVDES-DPD-LDEPQIEHLLQTAEAIRKDYPDEDW-LHLTGLIHDL 142 (183)
Q Consensus 90 I~EA~e~Ln~lVDeS-DPD-~dlpqi~H~lQTAEaIR~d~p~pDW-~qLtGLIHDL 142 (183)
+.+|+++........ ..+ +..|.|.|.+.+|+.+.....-.|. ...+||+||.
T Consensus 9 l~~A~~~A~~~H~gQ~rk~~~G~pyi~Hpl~VA~ila~~l~~~D~~~i~AAlLHDv 64 (179)
T 3nqw_A 9 FMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACITDEGVLMAALLHDV 64 (179)
T ss_dssp HHHHHHHHHHHSTTCBCSSSSCCBTHHHHHHHHHHHHTTTCCCCHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHhccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhH
Confidence 455666555444322 223 4689999999999999854422133 5568999985
No 23
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}
Probab=67.93 E-value=7.1 Score=30.94 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=26.2
Q ss_pred CcchHHHHHHHHHHHHhcCCCCCc-hhhhhhhhcc
Q 030081 109 DEPQIEHLLQTAEAIRKDYPDEDW-LHLTGLIHDL 142 (183)
Q Consensus 109 dlpqi~H~lQTAEaIR~d~p~pDW-~qLtGLIHDL 142 (183)
..|.|.|.+.+|+.+.....-.|. ...+||+||.
T Consensus 28 G~PYi~Hpl~VA~il~~~~~~~d~~~i~AALLHDv 62 (178)
T 3nr1_A 28 GTPYINHPIGVARILTHEAGITDIVVLQAALLHDT 62 (178)
T ss_dssp CCBTTHHHHHHHHHHHHTSCCCCHHHHHHHHHTTH
T ss_pred CCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhH
Confidence 489999999999999655422244 6778999985
No 24
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=64.87 E-value=3.3 Score=34.28 Aligned_cols=42 Identities=19% Similarity=0.179 Sum_probs=26.9
Q ss_pred CCCCCCcchHHHHHHHHHHHHhc-CCCCCchhhhhhhhccccc
Q 030081 104 SDPDLDEPQIEHLLQTAEAIRKD-YPDEDWLHLTGLIHDLGKV 145 (183)
Q Consensus 104 SDPD~dlpqi~H~lQTAEaIR~d-~p~pDW~qLtGLIHDLGKv 145 (183)
.++.-++.-+.-.+..|..|-+. +.+++-+.+++|+||+||.
T Consensus 21 ~~~~H~~~H~~rV~~~a~~ia~~~~~d~~~~~~AalLHDig~~ 63 (239)
T 3gw7_A 21 QDAAHDVCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVSL 63 (239)
T ss_dssp ------CCHHHHHHHHHHHHTTTSCSCTTHHHHHHHHTTTTC-
T ss_pred CCCCccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 34445566666666777777553 3577889999999999996
No 25
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=64.69 E-value=4.3 Score=35.64 Aligned_cols=39 Identities=28% Similarity=0.384 Sum_probs=27.4
Q ss_pred cchHHHHHHHHHHHHhc----CCCC-Cchhhhhhhhcccccccc
Q 030081 110 EPQIEHLLQTAEAIRKD----YPDE-DWLHLTGLIHDLGKVLNL 148 (183)
Q Consensus 110 lpqi~H~lQTAEaIR~d----~p~p-DW~qLtGLIHDLGKvl~l 148 (183)
-.-..|.+.+|...|+- +-++ .-..++||+||+|+..+.
T Consensus 49 ~~r~~Hsl~V~~~a~~ia~~~~~~~~~~~~~AaLLHDiG~~pfs 92 (371)
T 2hek_A 49 HTRFEHSLGVYHITERICESLKVKEKELVKLAGLLHDLGHPPFS 92 (371)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHTTTTTCCSSS
T ss_pred CChhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCccccc
Confidence 45678888887766552 2122 457899999999998743
No 26
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=61.44 E-value=2.6 Score=33.01 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=22.2
Q ss_pred cchHHHHHHHHH---HHHh----cCC--CCCchhhhhhhhcccccc
Q 030081 110 EPQIEHLLQTAE---AIRK----DYP--DEDWLHLTGLIHDLGKVL 146 (183)
Q Consensus 110 lpqi~H~lQTAE---aIR~----d~p--~pDW~qLtGLIHDLGKvl 146 (183)
.+-.+|.++.|. .|-. .++ +++...+.+|+||++.+.
T Consensus 31 esvaeHs~rVa~~A~~la~~~~~~~~~~d~~~v~~~aLlHD~~E~~ 76 (177)
T 2cqz_A 31 ESIADHSFGVAFITLVLADVLEKRGKRIDVEKALKMAIVHDLAEAI 76 (177)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHH
Confidence 344555555543 3332 233 445567999999998774
No 27
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=55.74 E-value=8.7 Score=34.34 Aligned_cols=52 Identities=19% Similarity=0.155 Sum_probs=34.7
Q ss_pred HHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHhcCCCCCchhhhhhhhcc
Q 030081 90 IWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDL 142 (183)
Q Consensus 90 I~EA~e~Ln~lVDeSDPD~dlpqi~H~lQTAEaIR~d~p~pDW~qLtGLIHDL 142 (183)
+.+|+++.......--..+..|.|.|.+.+|+.+..-+-+++ ...+||+||.
T Consensus 28 l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~-~i~AALLHDv 79 (393)
T 1vj7_A 28 VKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAV-TVACGFLHDV 79 (393)
T ss_dssp HHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHH-HHHHHHHTTH
T ss_pred HHHHHHHHHHHhccCcCCCCCcHHHHHHHHHHHHHHhcCCHH-HHHHHHhhhH
Confidence 455666554433221112347899999999999987664333 6789999985
No 28
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A
Probab=53.49 E-value=5.5 Score=31.89 Aligned_cols=36 Identities=25% Similarity=0.247 Sum_probs=25.8
Q ss_pred cchHHHHHHHHHH---HHhcCCCCCc-----hhhhhhhhcccccc
Q 030081 110 EPQIEHLLQTAEA---IRKDYPDEDW-----LHLTGLIHDLGKVL 146 (183)
Q Consensus 110 lpqi~H~lQTAEa---IR~d~p~pDW-----~qLtGLIHDLGKvl 146 (183)
.+-.+|.+++|-. +-. ++.-|+ .-..+|+||++.+.
T Consensus 37 EsVAeHS~~vA~iA~~la~-~~~vd~~~~~r~~~maL~HDl~E~~ 80 (173)
T 1ynb_A 37 ESVAEHNFRAAIIAFILAL-KSGESVEKACKAATAALFHDLHEAR 80 (173)
T ss_dssp CBHHHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHTTTTHHH
T ss_pred CcHHHHHHHHHHHHHHHhh-hcCCChhHHHHHHHHHHHcchHHhh
Confidence 5678898888865 433 233455 56779999999987
No 29
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=49.79 E-value=6.1 Score=31.71 Aligned_cols=38 Identities=29% Similarity=0.441 Sum_probs=25.8
Q ss_pred cchHHHHHHHHHHHH-------hcCC---CCCchhhhhhhhccccccc
Q 030081 110 EPQIEHLLQTAEAIR-------KDYP---DEDWLHLTGLIHDLGKVLN 147 (183)
Q Consensus 110 lpqi~H~lQTAEaIR-------~d~p---~pDW~qLtGLIHDLGKvl~ 147 (183)
.+..+|.+++|-... ...+ +++=.-..||+||+|+++.
T Consensus 30 EnVaeHS~~VA~lA~~la~~~~~~~~~~vD~~~~~~~aLlHDi~E~~~ 77 (201)
T 2paq_A 30 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLT 77 (201)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTTTHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhhHHhcCcccCHHHHHHHHHhcccccccC
Confidence 667889998875321 2222 3445566799999999984
No 30
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus}
Probab=49.50 E-value=6.5 Score=34.93 Aligned_cols=18 Identities=39% Similarity=0.512 Sum_probs=14.4
Q ss_pred CCCchhhhhhhhcccccc
Q 030081 129 DEDWLHLTGLIHDLGKVL 146 (183)
Q Consensus 129 ~pDW~qLtGLIHDLGKvl 146 (183)
+++-...+||+||+|+.-
T Consensus 97 ~~~l~~~a~LlHDiGh~P 114 (376)
T 2dqb_A 97 NEDLTEAIALSHDLGHPP 114 (376)
T ss_dssp CHHHHHHHHHHTTTTCCS
T ss_pred CHHHHHHHHHHHhcCCCc
Confidence 346678899999999973
No 31
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=44.14 E-value=9.8 Score=34.10 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=12.5
Q ss_pred chhhhhhhhcccccc
Q 030081 132 WLHLTGLIHDLGKVL 146 (183)
Q Consensus 132 W~qLtGLIHDLGKvl 146 (183)
-..++||+||+|+-=
T Consensus 88 ~~~~AaLlHDiGh~P 102 (410)
T 2q14_A 88 AVQAAILLHDIGHGP 102 (410)
T ss_dssp HHHHHHHHTTTTCCT
T ss_pred HHHHHHHHhccCCCc
Confidence 357899999999965
No 32
>3mzo_A LIN2634 protein; HD-domain phosphohydrolase, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.98A {Listeria innocua}
Probab=43.82 E-value=40 Score=27.44 Aligned_cols=37 Identities=19% Similarity=0.346 Sum_probs=26.0
Q ss_pred cchHHHHHHHHHH---H----HhcCCCCCc--hhhhhhhhcccccc
Q 030081 110 EPQIEHLLQTAEA---I----RKDYPDEDW--LHLTGLIHDLGKVL 146 (183)
Q Consensus 110 lpqi~H~lQTAEa---I----R~d~p~pDW--~qLtGLIHDLGKvl 146 (183)
.+-.+|.+++|-. + +..+++-|| +-+.+|+||++.+.
T Consensus 29 EsvAeHS~~vA~iA~~La~~~~~~~~~vD~~r~~~maL~HDl~E~~ 74 (216)
T 3mzo_A 29 HSVAEHSYKVTSIAQFFGAVEEDAGNEVNWRALYEKALNHDYSELF 74 (216)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTGGGGT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHccHHHHH
Confidence 5677888887643 2 223444566 67899999999987
No 33
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A
Probab=42.33 E-value=9.3 Score=33.92 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=27.5
Q ss_pred chHHHHHHHHH-HHHhcCCCCCchhhhhhhh-cccccc
Q 030081 111 PQIEHLLQTAE-AIRKDYPDEDWLHLTGLIH-DLGKVL 146 (183)
Q Consensus 111 pqi~H~lQTAE-aIR~d~p~pDW~qLtGLIH-DLGKvl 146 (183)
...+|+|++.. .|....+.+.++-|++|+| |+||-.
T Consensus 266 ~v~~h~L~~~d~~i~~~~~~~~~L~lAALLH~di~K~~ 303 (415)
T 3aql_A 266 RIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETA 303 (415)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHhHhcCcchhhhh
Confidence 45677777654 3666667778999999999 999953
No 34
>3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide triphosphohydrolase, hydrolase; 3.10A {Homo sapiens}
Probab=41.71 E-value=17 Score=34.10 Aligned_cols=14 Identities=43% Similarity=0.767 Sum_probs=11.7
Q ss_pred hhhhhhhhcccccc
Q 030081 133 LHLTGLIHDLGKVL 146 (183)
Q Consensus 133 ~qLtGLIHDLGKvl 146 (183)
++++||+||+|.-=
T Consensus 101 v~~AaLlHDiGH~P 114 (528)
T 3u1n_A 101 VQIAGLCHDLGHGP 114 (528)
T ss_dssp HHHHHHHTTTTCBT
T ss_pred HHHHHHHhccCCCC
Confidence 56799999999764
No 35
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens}
Probab=41.16 E-value=9.5 Score=31.23 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=25.2
Q ss_pred cchHHHHHHHHHHHHhcCC---CCCchhhhhhhhcccccc
Q 030081 110 EPQIEHLLQTAEAIRKDYP---DEDWLHLTGLIHDLGKVL 146 (183)
Q Consensus 110 lpqi~H~lQTAEaIR~d~p---~pDW~qLtGLIHDLGKvl 146 (183)
.+-.+|.+++|-..---.+ +++-.-..+|+|||+-+.
T Consensus 44 ESVAEHS~~vAliA~~l~~~~vD~~r~~~maL~HDl~E~~ 83 (204)
T 4dmb_A 44 ESVSDHMYRMAVMAMVIKDDRLNKDRCVRLALVHDMAECI 83 (204)
T ss_dssp CBHHHHHHHHHHHHHHSCCTTSCHHHHHHHHHHTTTTHHH
T ss_pred CcHHHHHHHHHHHHHHHccccCCHHHHHHHHHhcchHHhh
Confidence 5678888888765443221 233456679999999887
No 36
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens} SCOP: a.211.1.1
Probab=33.43 E-value=27 Score=28.71 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=37.8
Q ss_pred CcCCHHHHHHHhhhccCCC---CCCCCcchHHHHHHHHHHHHhcCCCC-Cchhhhhhhhcccccc
Q 030081 86 VEMSIWECCELLNDVVDES---DPDLDEPQIEHLLQTAEAIRKDYPDE-DWLHLTGLIHDLGKVL 146 (183)
Q Consensus 86 ~~MtI~EA~e~Ln~lVDeS---DPD~dlpqi~H~lQTAEaIR~d~p~p-DW~qLtGLIHDLGKvl 146 (183)
..+.|.+.++.|..+.--+ .-..-.+..+|.+++|.....-.|.- .=..+.+|+||++.++
T Consensus 27 ~~i~i~dia~~Lk~i~R~~~~~~~~~~eSVAeHS~~va~ia~~l~~~~~~r~~~~aL~HD~~E~~ 91 (207)
T 2gz4_A 27 LDVEIADIAHGLARVARWNGQTRGDHAFTVAQHCLIVETIFCRMCPGATPDEMQMALLHDAPEYV 91 (207)
T ss_dssp GGCCHHHHHHHHTTCBSGGGCCSSSSCCBHHHHHHHHHHHHHHHCTTCCHHHHHHHHTTTTTHHH
T ss_pred hhhhHHHHHHHHhhCcccCCCCCCCCCccHHHHHHHHHHHHHHHCCCCCHHHHHHHHhcCchHhh
Confidence 3455556666555433221 11234788999999998665332221 2267889999999987
No 37
>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase, translation; 3.40A {Homo sapiens} SCOP: a.173.1.1 d.218.1.4
Probab=31.89 E-value=20 Score=32.13 Aligned_cols=93 Identities=15% Similarity=0.062 Sum_probs=52.5
Q ss_pred chhhhHHHHHHHHHh------hhhhhHHHHHHHH------------HHhcCCCCCcCCHHHHHHHhhh--ccCCC-CCCC
Q 030081 50 EGERQEGVENFYRIN------HINQTYDFVKKMR------------EEYGKLNRVEMSIWECCELLND--VVDES-DPDL 108 (183)
Q Consensus 50 ~~~r~~~V~~fYr~~------H~~QTvdFV~~~~------------~~~~~~~~~~MtI~EA~e~Ln~--lVDeS-DPD~ 108 (183)
.+-|.-|..+|...- ...+|....++.. .++.++=... ....++++|+. +...- -|..
T Consensus 208 DPLRiLRa~RFaarl~~gf~~I~~~T~~ai~~~~~~L~~is~ERi~~El~kiL~~~-~~~~~l~~L~~~GlL~~i~lPe~ 286 (448)
T 1ou5_A 208 DYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGN-HVNHLIHLIYDLDVAPYIGLPAN 286 (448)
T ss_dssp CTTHHHHHHHHHHHSCSSSSCCCHHHHHHHHHSCTTGGGSCSHHHHHHHHHHHTST-THHHHHHHHHHTTCGGGGTCCCC
T ss_pred CHHHHHHHHHHHHHcCcCCCCcCHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHcCC-CHHHHHHHHHHCCCceEecCcch
Confidence 445666777777655 2347777766543 3333321211 33455555552 33332 4544
Q ss_pred C-cchHHHHHHHHHHHHhcCCCCCchhhhhhhhccccccc
Q 030081 109 D-EPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLN 147 (183)
Q Consensus 109 d-lpqi~H~lQTAEaIR~d~p~pDW~qLtGLIHDLGKvl~ 147 (183)
. +..+.|++++.. +- +.+.++-|++|+||+||+..
T Consensus 287 ~~i~~~~~~l~~~~---~~-~~~~~l~lAaLlhDi~ka~~ 322 (448)
T 1ou5_A 287 ASLEEFDKVSKNVD---GF-SPKPVTLLASLFKVQDDVTK 322 (448)
T ss_dssp SCCHHHHHHHHHHT---TS-CCCHHHHHGGGCCSTTTTHH
T ss_pred hhHHHHHHHHHHHH---hc-CCCHHHHHHHHhcChHHHHH
Confidence 3 456677776442 22 45678999999999998653
No 38
>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, P protein structure initiative, midwest center for structural genomics; HET: DGT DTP; 2.40A {Enterococcus faecalis} PDB: 2o6i_A*
Probab=31.48 E-value=20 Score=33.14 Aligned_cols=14 Identities=29% Similarity=0.413 Sum_probs=11.7
Q ss_pred hhhhhhhhcccccc
Q 030081 133 LHLTGLIHDLGKVL 146 (183)
Q Consensus 133 ~qLtGLIHDLGKvl 146 (183)
.+++||+||+|.--
T Consensus 127 v~~AaLlHDIGH~P 140 (480)
T 3irh_A 127 TLCAALLHDVGHGP 140 (480)
T ss_dssp HHHHHHHTTTTCCT
T ss_pred HHHHHHHhccCCCC
Confidence 46899999999864
No 39
>4a4a_A Alpha-N-acetylglucosaminidase family protein; hydrolase, 2 hydrolase, family 89 glycoside hydrolase, mucin carbohydrate-active enzyme; HET: NDG GAL; 1.90A {Clostridium perfringens} PDB: 2vcc_A 2vc9_A* 2vcb_A* 2vca_A
Probab=31.22 E-value=65 Score=32.06 Aligned_cols=77 Identities=23% Similarity=0.456 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCCCCC-cCCHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHhcCCCCCchh-----------hhhh
Q 030081 71 DFVKKMREEYGKLNRV-EMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLH-----------LTGL 138 (183)
Q Consensus 71 dFV~~~~~~~~~~~~~-~MtI~EA~e~Ln~lVDeSDPD~dlpqi~H~lQTAEaIR~d~p~pDW~q-----------LtGL 138 (183)
.|.+++++.||+-+|- .| +..|+.- ..|++++..+..+.+ ++|++..|+-=|+. |.|+
T Consensus 458 ~F~~~q~~~yG~~~h~Y~~------D~FnE~~--~~~~~~l~~~~~~v~--~am~~~dp~AvWv~QgW~~~~~~~~L~~v 527 (914)
T 4a4a_A 458 VFYEKQKEVFGDVTNFYGV------DPFHQGG--NTGDLDNGKIYEIIQ--NKMIEHDNDAVWVIQNWQGNPSNNKLEGL 527 (914)
T ss_dssp HHHHHHHHHHCSCCSEEEC------CTTTTSC--CCTTCCHHHHHHHHH--HHHHHHCTTCEEEEEEBTTBSCHHHHTTC
T ss_pred HHHHHHHHHhCCccccccc------CccccCC--CCCCcCHHHHHHHHH--HHHHHhCCCCEEEEcccCCCChHHHHhCC
Confidence 3666778899985543 22 2344432 234566655544433 66788889888883 4444
Q ss_pred hhcccccccccCCCC-CCCee
Q 030081 139 IHDLGKVLNLPSFGG-LPQWA 158 (183)
Q Consensus 139 IHDLGKvl~l~~fg~-epQWa 158 (183)
-+.||+|.|-.|.+ .|||.
T Consensus 528 -p~~~~mlvLDL~se~~p~w~ 547 (914)
T 4a4a_A 528 -TKKDQAMVLDLFSEVSPDWN 547 (914)
T ss_dssp -SCGGGEEEEETTTTTSCCCH
T ss_pred -CCCCCEEEEEcccccccccc
Confidence 22589999977775 57884
No 40
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1
Probab=28.05 E-value=40 Score=26.78 Aligned_cols=38 Identities=26% Similarity=0.345 Sum_probs=26.4
Q ss_pred CcchHHHHHHHHHH---H----HhcCCCCCc--hhhhhhhhcccccc
Q 030081 109 DEPQIEHLLQTAEA---I----RKDYPDEDW--LHLTGLIHDLGKVL 146 (183)
Q Consensus 109 dlpqi~H~lQTAEa---I----R~d~p~pDW--~qLtGLIHDLGKvl 146 (183)
-.+-.+|.+++|-. + |+.+|.-|+ .-+.+|+||++.++
T Consensus 35 ~EsvAeHS~~vA~ia~~la~~~~~~~~~~d~~r~~~~aL~HDl~E~~ 81 (184)
T 1xx7_A 35 PESVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLGEAI 81 (184)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHcCcHHhh
Confidence 35678888888752 2 223455566 56789999999887
No 41
>2ksn_A Ubiquitin domain-containing protein 2; UBTD2, DC-UBP, signaling protein; NMR {Homo sapiens}
Probab=23.94 E-value=68 Score=25.43 Aligned_cols=47 Identities=19% Similarity=0.302 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHhcCCC---CCcCCHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHhc
Q 030081 69 TYDFVKKMREEYGKLN---RVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKD 126 (183)
Q Consensus 69 TvdFV~~~~~~~~~~~---~~~MtI~EA~e~Ln~lVDeSDPD~dlpqi~H~lQTAEaIR~d 126 (183)
|-.=..+||++|-.-- -++.-||.||..--.++..+| ++||-+|-..
T Consensus 34 Tr~qL~~~R~EFWDT~p~~~Gr~EIW~ALraA~~~~e~~D-----------l~tAQ~Ilda 83 (137)
T 2ksn_A 34 TDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAHAFESND-----------HELAQAIIDG 83 (137)
T ss_dssp SHHHHHHHHHHHHTTSSTTCCCHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCC-----------HHHHHHHHHH
Confidence 4455678999997754 467889999988877764443 5778777655
No 42
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=22.05 E-value=50 Score=22.87 Aligned_cols=19 Identities=16% Similarity=-0.010 Sum_probs=15.4
Q ss_pred CCCCCcCCHHHHHHHhhhc
Q 030081 82 KLNRVEMSIWECCELLNDV 100 (183)
Q Consensus 82 ~~~~~~MtI~EA~e~Ln~l 100 (183)
.+.-+.||+.||+.-|+-+
T Consensus 7 ~~~~kpMsveEAv~qmel~ 25 (65)
T 3ka5_A 7 RFAIKPMSEEEAVLEMELL 25 (65)
T ss_dssp CSCCSCBCHHHHHHHHHHH
T ss_pred eecCCCCCHHHHHHHHHhC
Confidence 4667899999999988744
No 43
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=21.65 E-value=44 Score=22.39 Aligned_cols=18 Identities=17% Similarity=0.027 Sum_probs=12.9
Q ss_pred CCCCcCCHHHHHHHhhhc
Q 030081 83 LNRVEMSIWECCELLNDV 100 (183)
Q Consensus 83 ~~~~~MtI~EA~e~Ln~l 100 (183)
+.-+.||+.||+.-|+-+
T Consensus 8 ~~~kpmsveEAv~qmel~ 25 (57)
T 3k2t_A 8 FSLKPMDSEEAVLQMNLL 25 (57)
T ss_dssp ---CCBCHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHhC
Confidence 556789999999988753
Done!