Query 030082
Match_columns 183
No_of_seqs 208 out of 762
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 13:06:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030082.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030082hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a17_H RPL10, 60S ribosomal pr 100.0 7.9E-84 2.7E-88 543.7 18.7 177 1-180 38-214 (215)
2 3j0l_J Ribosomal protein L10; 100.0 2.8E-83 9.4E-88 541.6 6.2 173 1-173 36-208 (219)
3 3iz5_I 60S ribosomal protein L 100.0 4E-84 1.4E-88 547.9 -16.6 181 1-181 38-218 (224)
4 2zkr_h 60S ribosomal protein L 100.0 3.3E-78 1.1E-82 509.4 14.8 175 1-175 38-212 (214)
5 2pa2_A 60S ribosomal protein L 100.0 1.7E-70 6E-75 442.2 12.6 145 1-145 7-151 (151)
6 1vq8_H 50S ribosomal protein L 100.0 1.4E-61 4.7E-66 397.0 14.9 133 1-133 35-168 (171)
7 3j21_N 50S ribosomal protein L 100.0 1.4E-61 4.9E-66 399.5 11.9 128 8-135 42-171 (181)
8 1ffk_F Ribosomal protein L10E; 100.0 2.5E-52 8.7E-57 338.3 14.8 121 1-134 35-155 (157)
9 3r8s_M 50S ribosomal protein L 100.0 5.5E-41 1.9E-45 266.2 11.2 106 11-132 29-134 (136)
10 2ftc_I Mitochondrial ribosomal 100.0 5.2E-41 1.8E-45 260.5 10.6 103 12-127 16-118 (118)
11 3bbo_O Ribosomal protein L16; 100.0 1.2E-40 4.1E-45 263.9 4.9 104 12-131 31-134 (135)
12 2zjr_J 50S ribosomal protein L 100.0 2.3E-40 7.8E-45 264.3 2.8 106 12-133 32-137 (142)
13 4e34_A Golgi-associated PDZ an 43.9 3.9 0.00013 27.3 -0.5 29 90-118 45-76 (87)
14 3cbz_A Dishevelled-2; PDZ doma 41.3 13 0.00045 26.1 2.0 42 91-133 51-95 (108)
15 1wi4_A Synip, syntaxin binding 39.0 18 0.0006 25.6 2.4 40 91-130 59-101 (109)
16 3e17_A Tight junction protein 38.5 6.2 0.00021 26.8 -0.1 39 91-133 39-80 (88)
17 2pa1_A PDZ and LIM domain prot 37.1 37 0.0013 22.4 3.7 37 92-132 44-83 (87)
18 2yt7_A Amyloid beta A4 precurs 36.8 16 0.00053 25.3 1.8 35 84-118 48-85 (101)
19 2iwq_A Multiple PDZ domain pro 36.3 17 0.00059 26.4 2.0 27 92-118 78-107 (123)
20 2ego_A General receptor for ph 35.8 47 0.0016 22.4 4.1 27 92-118 55-84 (96)
21 2vsp_A PDZ domain-containing p 35.1 44 0.0015 22.2 3.9 37 92-132 45-84 (91)
22 2ejy_A 55 kDa erythrocyte memb 34.9 15 0.00052 25.9 1.5 28 91-118 54-84 (97)
23 2fcf_A Multiple PDZ domain pro 34.6 19 0.00065 24.6 1.9 37 92-132 58-97 (103)
24 1kwa_A Hcask/LIN-2 protein; PD 33.2 9.5 0.00032 25.9 0.1 36 84-119 36-74 (88)
25 1vb7_A PDZ and LIM domain 2; P 33.0 52 0.0018 22.1 3.9 38 91-132 47-87 (94)
26 2iwo_A Multiple PDZ domain pro 32.4 19 0.00064 26.0 1.6 39 90-132 70-111 (120)
27 2cs5_A Tyrosine-protein phosph 32.0 28 0.00096 24.5 2.5 43 91-133 60-105 (119)
28 2byg_A Channel associated prot 30.0 22 0.00074 25.4 1.6 28 91-118 72-102 (117)
29 2lob_A Golgi-associated PDZ an 36.1 11 0.00038 27.0 0.0 24 83-106 63-86 (112)
30 3nfk_A Tyrosine-protein phosph 29.9 68 0.0023 21.9 4.2 29 91-119 62-93 (107)
31 2o2t_A Multiple PDZ domain pro 29.7 31 0.0011 24.1 2.4 46 84-133 60-109 (117)
32 2e7k_A Maguk P55 subfamily mem 28.6 17 0.00058 24.7 0.8 28 91-118 47-76 (91)
33 2fne_A Multiple PDZ domain pro 27.9 32 0.0011 24.6 2.2 28 91-118 71-101 (117)
34 2csj_A TJP2 protein; PDZ domai 27.7 20 0.0007 25.3 1.1 29 90-118 61-92 (117)
35 1um1_A KIAA1849 protein, RSGI 27.3 93 0.0032 21.3 4.6 39 91-133 54-95 (110)
36 2v90_A PDZ domain-containing p 27.2 82 0.0028 21.0 4.2 38 92-133 48-88 (96)
37 2gzv_A PRKCA-binding protein; 27.2 87 0.003 22.1 4.5 39 91-133 68-109 (114)
38 2h2b_A Tight junction protein 27.2 25 0.00084 24.2 1.5 22 83-106 49-70 (107)
39 2db5_A INAD-like protein; PDZ 27.0 36 0.0012 24.3 2.4 27 91-117 72-102 (128)
40 2d90_A PDZ domain containing p 26.7 1.1E+02 0.0039 20.6 4.9 38 92-133 48-88 (102)
41 2dlu_A INAD-like protein; PDZ 26.7 94 0.0032 21.3 4.5 28 91-118 56-86 (111)
42 3o46_A Maguk P55 subfamily mem 26.7 15 0.00051 24.8 0.2 29 91-119 46-77 (93)
43 3bpu_A Membrane-associated gua 26.4 24 0.00081 23.4 1.2 32 83-116 36-70 (88)
44 2q9v_A Membrane-associated gua 25.6 18 0.00063 24.0 0.5 29 91-119 45-76 (90)
45 2he4_A Na(+)/H(+) exchange reg 25.6 72 0.0024 21.0 3.6 26 92-117 46-74 (90)
46 3tsv_A Tight junction protein 24.6 66 0.0023 23.2 3.5 51 92-151 69-122 (124)
47 4amh_A Disks large homolog 1; 24.2 38 0.0013 23.5 2.0 39 91-133 50-91 (106)
48 2fe5_A Presynaptic protein SAP 24.2 36 0.0012 22.6 1.8 27 91-117 51-80 (94)
49 1uew_A Membrane associated gua 23.9 42 0.0014 23.5 2.2 28 90-117 60-90 (114)
50 2awx_A Synapse associated prot 23.6 20 0.00069 24.7 0.4 38 91-132 51-91 (105)
51 1y7n_A Amyloid beta A4 precurs 23.5 41 0.0014 23.0 2.0 26 92-117 49-77 (90)
52 2la8_A Inactivation-NO-after-p 23.1 18 0.0006 25.6 0.0 28 91-118 43-73 (106)
53 2qg1_A Multiple PDZ domain pro 22.6 1.2E+02 0.0041 19.9 4.3 27 91-117 47-76 (92)
54 2d92_A INAD-like protein; PDZ 22.6 45 0.0015 23.1 2.1 28 91-118 62-92 (108)
55 1q7x_A PDZ2B domain of PTP-BAS 22.3 75 0.0026 21.7 3.3 28 91-118 60-90 (108)
56 2rcz_A Tight junction protein 22.2 1.1E+02 0.0037 19.3 3.9 26 92-117 40-68 (81)
57 2dsj_A Pyrimidine-nucleoside ( 22.2 86 0.003 28.3 4.4 28 91-118 379-406 (423)
58 2dkr_A LIN-7 homolog B; LIN-7B 22.1 1.1E+02 0.0038 20.0 4.0 28 91-118 48-78 (93)
59 1wha_A KIAA0147 protein, scrib 22.0 27 0.00094 24.0 0.9 37 92-132 57-96 (105)
60 1wif_A RSGI RUH-020, riken cDN 21.9 28 0.00096 25.8 1.0 40 91-133 67-110 (126)
61 3cyy_A Tight junction protein 21.9 1E+02 0.0036 20.1 3.8 27 91-117 41-70 (92)
62 2edz_A PDZ domain-containing p 21.9 1.2E+02 0.0041 21.0 4.3 37 92-132 56-95 (114)
63 3hpk_A Protein interacting wit 21.8 20 0.00069 25.6 0.1 38 91-132 63-103 (125)
64 1whd_A RGS3, regulator of G-pr 21.7 1.3E+02 0.0045 20.3 4.4 27 91-117 53-82 (100)
65 1wf8_A Neurabin-I; PDZ domain, 21.6 34 0.0012 23.6 1.3 28 91-118 58-88 (107)
66 2jil_A GRIP1 protein, glutamat 21.6 86 0.0029 20.9 3.4 27 91-117 50-79 (97)
67 1ihj_A INAD; intermolecular di 21.4 39 0.0013 22.7 1.6 26 92-117 56-84 (98)
68 1uep_A Membrane associated gua 21.4 29 0.00098 23.9 0.9 28 91-118 52-82 (103)
69 3lnn_A Membrane fusion protein 21.0 81 0.0028 26.1 3.7 23 91-115 78-100 (359)
70 2dm8_A INAD-like protein; PDZ 20.8 92 0.0031 21.5 3.5 27 91-117 61-90 (116)
71 2qzb_A Uncharacterized protein 20.8 41 0.0014 27.1 1.7 31 73-103 44-74 (166)
72 1d5g_A Human phosphatase HPTP1 20.6 49 0.0017 22.1 1.9 27 91-117 51-80 (96)
73 1va8_A Maguk P55 subfamily mem 20.3 1.2E+02 0.004 21.1 4.0 26 93-118 68-96 (113)
74 2yuy_A RHO GTPase activating p 20.1 49 0.0017 23.6 1.9 26 92-117 79-107 (126)
75 2edv_A FERM and PDZ domain-con 20.1 35 0.0012 23.3 1.1 22 83-106 41-62 (96)
No 1
>4a17_H RPL10, 60S ribosomal protein L10; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_H 4a1c_H 4a1e_H
Probab=100.00 E-value=7.9e-84 Score=543.66 Aligned_cols=177 Identities=61% Similarity=0.983 Sum_probs=161.5
Q ss_pred CCcCCCCCCceeeEEeeccccccChHHHHHHHHHHHhhhhhhhCCcceeEEEEecCCceeeeccccccccchhhhccccC
Q 030082 1 MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRG 80 (183)
Q Consensus 1 ~kka~v~~fp~~~~Lvs~E~~qiss~aLEAARi~~nkyl~k~~Gk~~f~l~IRv~P~~vir~nkmls~agAdRlq~GMr~ 80 (183)
+|||+|||||+|+||+|+|++||||+||||||||+||||+|++|||+||||||+|||||||+|||||||||||||+|||+
T Consensus 38 ~kka~~~~fp~~~~L~a~E~~qIss~qIEAARia~nRyl~r~~GK~~fhl~IRifP~~vir~nkmls~agAdRl~tgM~~ 117 (215)
T 4a17_H 38 RKKATVEEFPYVVHIVSDEKEQITSEALEAARIAANKNLIKFISKDAFHLRCRVHPWHVLRINKMLSCAGADRLQSGMRG 117 (215)
T ss_dssp CTTCCTTTCCEEEEEEECSCEEEEHHHHHHHHHHHHHHHHHHSCGGGCEEEECCCCCEEEEECC-----------CTTSC
T ss_pred CCcCCcccCCeeEEEEECccccCcHHHHHHHHHHHHHHHHHhcCCccceEEEEECCCceeeecccccccchhhhhccccC
Confidence 57899999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred CCCCcceEEEEeeCCCEEEEEEeeCCCHHHHHHHHHHccccCCCceEEEEecCCcccccChHHHHHhhhcCeEeeccceE
Q 030082 81 AFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVNA 160 (183)
Q Consensus 81 akGkp~g~vArV~~Gqiifei~~~~~~~~~a~eALrrA~~KlP~~~kIv~~~~~gft~~~~~e~~~~~~~~~l~~dG~~v 160 (183)
|||+|+||||||++|||||||+++++|+++|+|||++|++|||++|+|+++++||||+|++|||++|++||+|+||||+|
T Consensus 118 akGkp~gwvArVk~Gqilfei~g~~~~~~~A~eALr~A~~KlP~~tkiv~~~kwgft~~~~~~~~~~~~~~~l~~dg~~~ 197 (215)
T 4a17_H 118 AFGKALGKAARVDIGSILFSVRVKEPHVKYAIDALTRAKAKFPGRQKVVTSQKWGFTKLTRAQYSRLRNQKKLVTDGSNV 197 (215)
T ss_dssp CCCEEEEEEEEECTTCEEEEEEECGGGHHHHHHHHHHHGGGSSSCEEEEEESBCTTSSSBHHHHHHHHHTTCEEEETTEE
T ss_pred CCCCCCeEEEEEcCCCEEEEEEecCCCHHHHHHHHHHHhhhCCCceEEEEccccCCCccCHHHHHHHHHCCeEecCCccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCCCCCCCcccc
Q 030082 161 KLLGCHGPLASRQPGRAFLH 180 (183)
Q Consensus 161 k~~~~~gpl~~~~~~~~~~~ 180 (183)
||+++||||++| ..|+.
T Consensus 198 k~~~~~gpl~~~---~~~~~ 214 (215)
T 4a17_H 198 KVIGERGPLSRL---ELFRK 214 (215)
T ss_dssp EECCTTSCTTTS---GGGC-
T ss_pred EEccCCCCHHHH---hhhhc
Confidence 999999999999 55543
No 2
>3j0l_J Ribosomal protein L10; mammalia, translation, elongation cycle, tRNA, ribosome; 9.80A {Oryctolagus cuniculus} PDB: 3j0q_J 3izc_I 3izs_I 3o58_J 3o5h_J 3u5e_I 3u5i_I 4b6a_I
Probab=100.00 E-value=2.8e-83 Score=541.57 Aligned_cols=173 Identities=64% Similarity=1.019 Sum_probs=159.5
Q ss_pred CCcCCCCCCceeeEEeeccccccChHHHHHHHHHHHhhhhhhhCCcceeEEEEecCCceeeeccccccccchhhhccccC
Q 030082 1 MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRG 80 (183)
Q Consensus 1 ~kka~v~~fp~~~~Lvs~E~~qiss~aLEAARi~~nkyl~k~~Gk~~f~l~IRv~P~~vir~nkmls~agAdRlq~GMr~ 80 (183)
+|||+|||||+|+||+|+|++||||+|||||||||||||+|++|||+||||||+|||||||+|||||||||||||+|||+
T Consensus 36 ~kka~~~efp~~~~L~a~E~~qIss~qIEAARia~nRyl~r~~GK~~fhlwIRifP~~vir~nkmls~AgAdRl~tgMr~ 115 (219)
T 3j0l_J 36 KKKATVDEFPLCVHLVSNELEQLSSEALEAARICANKYMTTVSGRDAFHLRVRVHPFHVLRINKMLSCAGADRLQQGMRG 115 (219)
T ss_dssp SCSCCSSSSCCCEEEECCSCEEECHHHHHHHHHHHHHHHHHTTCTTTCCBCCCSCCCCEEEECC-----------CCSSC
T ss_pred CCcCCcccCCeeEEEEECccccccHHHHHHHHHHHHHHHHHhcCCccceEEEEECCCceeeecccccccchhhhhccccC
Confidence 57899999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred CCCCcceEEEEeeCCCEEEEEEeeCCCHHHHHHHHHHccccCCCceEEEEecCCcccccChHHHHHhhhcCeEeeccceE
Q 030082 81 AFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVNA 160 (183)
Q Consensus 81 akGkp~g~vArV~~Gqiifei~~~~~~~~~a~eALrrA~~KlP~~~kIv~~~~~gft~~~~~e~~~~~~~~~l~~dG~~v 160 (183)
|||+|+||||||++|||||||+++++|+++|+|||++|++|||++|+|+++++||||+|++|||++|++||+|+||||+|
T Consensus 116 akGkp~gwvArVk~Gqilfei~g~~~~~~~A~eALr~A~~KLP~~tkiv~~~kwgft~~~~~~~~~~~~~~~l~~dg~~~ 195 (219)
T 3j0l_J 116 AWGKPHGLAARVDIGQIIFSVRTKDSNKDVVVEGLRRARYKFPGQQKIILSKKWGFTNLDRPEYLKKREAGEVKDDGAFV 195 (219)
T ss_dssp CCCEEEEECEEECTTCEESCCCCCGGGHHHHHHHHHHHHHSSSCCCCCEECCCSSSSSCSCHHHHTTTTSCCSCCCSSSC
T ss_pred CCCCCCeEEEEEcCCCEEEEEEecCcCHHHHHHHHHHHhhhCCCCeEEEEecccCccccCHHHHHHHHHCCeEecCCccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCCCC
Q 030082 161 KLLGCHGPLASRQ 173 (183)
Q Consensus 161 k~~~~~gpl~~~~ 173 (183)
||+++||||++|.
T Consensus 196 k~~~~~gpl~~~~ 208 (219)
T 3j0l_J 196 KFLSKKGSLENNI 208 (219)
T ss_dssp CCSCCSSSCHHHH
T ss_pred EEccCCCCHHHHH
Confidence 9999999999985
No 3
>3iz5_I 60S ribosomal protein L10 (L10E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_I 1s1i_I 3jyw_I
Probab=100.00 E-value=4e-84 Score=547.93 Aligned_cols=181 Identities=85% Similarity=1.359 Sum_probs=177.6
Q ss_pred CCcCCCCCCceeeEEeeccccccChHHHHHHHHHHHhhhhhhhCCcceeEEEEecCCceeeeccccccccchhhhccccC
Q 030082 1 MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRG 80 (183)
Q Consensus 1 ~kka~v~~fp~~~~Lvs~E~~qiss~aLEAARi~~nkyl~k~~Gk~~f~l~IRv~P~~vir~nkmls~agAdRlq~GMr~ 80 (183)
+|||+|||||+|+||+|+|++||||+||||||||+||||+|++|||+||||||+|||||||+|||||||||||||+|||+
T Consensus 38 ~kka~~~efp~~~~L~a~E~~qIss~qIEAARia~nRyl~r~~GK~~fhlwIRifP~~vir~nkmls~AgAdRl~tGMr~ 117 (224)
T 3iz5_I 38 MKKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRG 117 (224)
T ss_dssp SCCCGGGTSSCCSCCCCCTTTSCSCCCCCCSSSSEECCSSCHHHHCCCEEEEEECSCCEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCcccCceEEEEEECccccccHHHHHHHHHHHHHHHHHhcCCccceEEEEeCCCceeeecccccccchhhhhccccC
Confidence 57899999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred CCCCcceEEEEeeCCCEEEEEEeeCCCHHHHHHHHHHccccCCCceEEEEecCCcccccChHHHHHhhhcCeEeeccceE
Q 030082 81 AFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVNA 160 (183)
Q Consensus 81 akGkp~g~vArV~~Gqiifei~~~~~~~~~a~eALrrA~~KlP~~~kIv~~~~~gft~~~~~e~~~~~~~~~l~~dG~~v 160 (183)
|||+|+||||||++|||||||+++++|+++|+|||++|++|||++|+|+++++||||+|++|||++|++||+|++|||+|
T Consensus 118 ~kGkp~gwvArVk~Gqilfei~g~~~~~~~A~eALrrA~~KLP~ktkiv~~~kwgft~~~~~~~~~~~~~~~l~~dg~~v 197 (224)
T 3iz5_I 118 AFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNA 197 (224)
T ss_dssp CSSSCSCEEEECCCCCSEECCCCCCCCSSCSSSSSSCCCSCCCCCEEEEECCTTTEEEEEEECCSSSCSHHHHHHHHHHH
T ss_pred CCCCCCeEEEEEcCCCEEEEEEecCcCHHHHHHHHHHHhhhCCCceEEEEecccCccccCHHHHHHHHHcCcEecCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCCCCCCCccccC
Q 030082 161 KLLGCHGPLASRQPGRAFLHA 181 (183)
Q Consensus 161 k~~~~~gpl~~~~~~~~~~~~ 181 (183)
||+++||||++|..++.|..+
T Consensus 198 k~~~~~gpl~~~~~~~~~~~~ 218 (224)
T 3iz5_I 198 QLLGSHGRLAKRAPGKAFLAE 218 (224)
T ss_dssp TSSSCEECCCCCSSTTHHHHH
T ss_pred EEcCCCCChHHcCcccccccc
Confidence 999999999999999998754
No 4
>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=3.3e-78 Score=509.37 Aligned_cols=175 Identities=65% Similarity=1.026 Sum_probs=129.9
Q ss_pred CCcCCCCCCceeeEEeeccccccChHHHHHHHHHHHhhhhhhhCCcceeEEEEecCCceeeeccccccccchhhhccccC
Q 030082 1 MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRG 80 (183)
Q Consensus 1 ~kka~v~~fp~~~~Lvs~E~~qiss~aLEAARi~~nkyl~k~~Gk~~f~l~IRv~P~~vir~nkmls~agAdRlq~GMr~ 80 (183)
+|||++||||+|++|+|+|++||||+||||||+|+||||++.+|+|+||||||+|||||||+|||||||||||||+|||+
T Consensus 38 ~~~a~~~~fp~~~gL~a~E~~~Its~qIEAARia~nR~lkr~~Gk~~fklwIRifP~~~it~nkmls~kgAdRlqtgMg~ 117 (214)
T 2zkr_h 38 RKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRG 117 (214)
T ss_dssp CSSSCSTTCSEEEEEEESSCEEEEHHHHHHHHHHHHHHHHHHHCTTCCEEEECCCCCEEEEECTTTCCSSCSSTTSSSTT
T ss_pred CCcCCcccCCEEEEEEECcccccCHHHHHHHHHHHHHHHhhccCCcCcEEEEEECCCceeecccccccCCchhhcccccC
Confidence 57899999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred CCCCcceEEEEeeCCCEEEEEEeeCCCHHHHHHHHHHccccCCCceEEEEecCCcccccChHHHHHhhhcCeEeeccceE
Q 030082 81 AFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVNA 160 (183)
Q Consensus 81 akGkp~g~vArV~~Gqiifei~~~~~~~~~a~eALrrA~~KlP~~~kIv~~~~~gft~~~~~e~~~~~~~~~l~~dG~~v 160 (183)
|||+|+||||+|++|||||||++++.++++|+|||++|++|||++|+|+++++||||+|++|||++|+++|+|++|||+|
T Consensus 118 gkGkp~~wvArVkpGqilfEi~~~~v~~~~A~eALr~A~~KLP~ktkiv~~~~~gft~~~~~~~~~~~~~~~~~~dg~~~ 197 (214)
T 2zkr_h 118 AFGKPQGTVAKVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFENMVAEKRLIPDGCGV 197 (214)
T ss_dssp CCCEEEEEEEEECTTCEEEEEEECSTTHHHHHHHHHHHHHTSSSCEEEEECC----------------------------
T ss_pred CCCCCcEEEEEECCCCEEEEEeCCCCCHHHHHHHHHHHHhhCCCcEEEEEeccCCccccCHHHHHHHHHCCeEecCCceE
Confidence 99999999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCCCCCC
Q 030082 161 KLLGCHGPLASRQPG 175 (183)
Q Consensus 161 k~~~~~gpl~~~~~~ 175 (183)
||+++||||++|...
T Consensus 198 ~~~~~~g~l~~~~~~ 212 (214)
T 2zkr_h 198 KYIPNRGPLDKWRAL 212 (214)
T ss_dssp ---------------
T ss_pred EEECCCCChHHhhhc
Confidence 999999999998743
No 5
>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1
Probab=100.00 E-value=1.7e-70 Score=442.23 Aligned_cols=145 Identities=72% Similarity=1.121 Sum_probs=106.5
Q ss_pred CCcCCCCCCceeeEEeeccccccChHHHHHHHHHHHhhhhhhhCCcceeEEEEecCCceeeeccccccccchhhhccccC
Q 030082 1 MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRG 80 (183)
Q Consensus 1 ~kka~v~~fp~~~~Lvs~E~~qiss~aLEAARi~~nkyl~k~~Gk~~f~l~IRv~P~~vir~nkmls~agAdRlq~GMr~ 80 (183)
+|||++||||+|++|+|+|++||||+||||||+|+||||+|.+|+++||||||+|||||||+|||+|||||||||+|||+
T Consensus 7 ~~~~~~~~fp~~~~L~a~E~~~Its~qIEAaRia~~R~lkr~~Gk~~~~iwIRifP~~~ir~nkmlT~kgadRlq~gMg~ 86 (151)
T 2pa2_A 7 RKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRG 86 (151)
T ss_dssp --CCCTTTCCEEEEEEECSCEEEEHHHHHHHHHHHHHHHHHHHCTTSEEEEECCSCC-----------------------
T ss_pred CCcCCcccCCEEEEEEECccccCCHHHHHHHHHHHHHHHhhhcCCcCcEEEEEECCCeeEeecccccccchhhhhccccc
Confidence 57999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred CCCCcceEEEEeeCCCEEEEEEeeCCCHHHHHHHHHHccccCCCceEEEEecCCcccccChHHHH
Q 030082 81 AFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYL 145 (183)
Q Consensus 81 akGkp~g~vArV~~Gqiifei~~~~~~~~~a~eALrrA~~KlP~~~kIv~~~~~gft~~~~~e~~ 145 (183)
|||+|+||||+|+||||||||++++.++++|+|||++|++|||++|+|+++++||||+|++|||+
T Consensus 87 gkG~p~~wvArVk~G~ilfei~~~~v~~~~A~eAlr~A~~KlP~ktkiv~~~~~gft~~~~~~~~ 151 (151)
T 2pa2_A 87 AFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFE 151 (151)
T ss_dssp ------CCEEEECTTBEEEEEEECGGGHHHHHHHHHHHGGGSSSCEEEEEESCCCCCBC------
T ss_pred CCCCccEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEEeccCCCCCCChhhCC
Confidence 99999999999999999999999878999999999999999999999999999999999999995
No 6
>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H* 1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H* 1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H* 2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ...
Probab=100.00 E-value=1.4e-61 Score=396.97 Aligned_cols=133 Identities=37% Similarity=0.556 Sum_probs=119.0
Q ss_pred CCcCCCCCCceeeEEeeccccccChHHHHHHHHHHHhhhhhhhCC-cceeEEEEecCCceeeeccccccccchhhhcccc
Q 030082 1 MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGK-DAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMR 79 (183)
Q Consensus 1 ~kka~v~~fp~~~~Lvs~E~~qiss~aLEAARi~~nkyl~k~~Gk-~~f~l~IRv~P~~vir~nkmls~agAdRlq~GMr 79 (183)
+|||++||||+|++|+|+|++||||+||||||+|+||||++.+|+ |+||||||+|||||||+|||||||||||||+|||
T Consensus 35 ~~~~~~~~fp~~~~L~a~E~~~Its~qIEAaRia~~R~lkk~~Gk~~~f~iwIRifP~~~ir~nkm~T~kgAdRlq~rMg 114 (171)
T 1vq8_H 35 RKQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKQATGAGADRVSDGMR 114 (171)
T ss_dssp CTTSCSTTCSEEEEEEESSCEEEEHHHHHHHHHHHHHHHHHHHCTTCSCEEEECCCCCEEEEECC-----------CCST
T ss_pred CCcCCcccCCEEEEEEECcccccCHHHHHHHHHHHHHHhHHhcCCCCCcEEEEEEcCCeeEeccccccccchhhhhcccc
Confidence 578999999999999999999999999999999999999988999 9999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEeeCCCEEEEEEeeCCCHHHHHHHHHHccccCCCceEEEEecC
Q 030082 80 GAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRK 133 (183)
Q Consensus 80 ~akGkp~g~vArV~~Gqiifei~~~~~~~~~a~eALrrA~~KlP~~~kIv~~~~ 133 (183)
+|||+|+||||+|++|||||||+++++++++|+|||++|++|||++|+|+++++
T Consensus 115 ~gkG~p~~wvArVk~G~ilfei~~~~v~~~~A~eAlr~A~~KLP~ktkiv~~~~ 168 (171)
T 1vq8_H 115 AAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIDSSPA 168 (171)
T ss_dssp TCCCEEEEEEEEECTTCEEEEEEECTTTHHHHHHHHHHHGGGSSSCEEEEECSC
T ss_pred ccCCCCcEEEEEECCCCEEEEEECcCCCHHHHHHHHHHHHhhCCCcEEEEEecC
Confidence 999999999999999999999999888999999999999999999999998875
No 7
>3j21_N 50S ribosomal protein L10E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.4e-61 Score=399.51 Aligned_cols=128 Identities=40% Similarity=0.595 Sum_probs=125.1
Q ss_pred CCceeeEEeeccccccChHHHHHHHHHHHhhhhhhhCCcceeEEEEecCCceeeeccccccccchhhhccccCCCCCcce
Q 030082 8 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQG 87 (183)
Q Consensus 8 ~fp~~~~Lvs~E~~qiss~aLEAARi~~nkyl~k~~Gk~~f~l~IRv~P~~vir~nkmls~agAdRlq~GMr~akGkp~g 87 (183)
|||+|+||+|+|++||||+||||||+|+||||+|++|||+||||||+|||||||+|||||||||||||+|||+|||+|+|
T Consensus 42 ~fp~~~~L~a~E~~qIss~qiEAARia~nRyl~r~~Gk~~fhl~IRifP~~vir~nkmls~agAdRl~~gM~~~kGkp~g 121 (181)
T 3j21_N 42 DFEFEVSLHTAEPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIG 121 (181)
T ss_dssp SCCEEEEEEECSCEEEEHHHHHHHHHHHHHHHHHHHCTTSCEEECCCCCCCCCCCCCCCCCCTTCCSCCSSSSCSCCCCC
T ss_pred CCCEEEEEEEcccccccHHHHHHHHHHHHHHHHHhcCCccceEEEEECCCceeeecccccccchhhhccccccccCCcce
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCCEEEEEEeeCCCHHHHHHHHHHccccCCCce--EEEEecCCc
Q 030082 88 TCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQ--KIIVSRKWG 135 (183)
Q Consensus 88 ~vArV~~Gqiifei~~~~~~~~~a~eALrrA~~KlP~~~--kIv~~~~~g 135 (183)
|||||++|||||||+++++|+++|+|||++|++|||++| +|++++...
T Consensus 122 wvArVk~Gqilfei~~~~~~~~~A~eAlr~A~~KlP~~t~~kiv~~~~~~ 171 (181)
T 3j21_N 122 LAARLKKDQKILSIRVNRQHLKFAIEGARRAAMKFPCKCYYRIYDKEGND 171 (181)
T ss_dssp CEEEECSSEEEEEEEECSTTHHHHHHHHHHHHHSSSSCCSSCEEECCCC-
T ss_pred EEEEEcCCCEEEEEEecCCCHHHHHHHHHHHhccCCCCeeeEEEEeccHH
Confidence 999999999999999999999999999999999999999 999998753
No 8
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ...
Probab=100.00 E-value=2.5e-52 Score=338.28 Aligned_cols=121 Identities=30% Similarity=0.367 Sum_probs=115.7
Q ss_pred CCcCCCCCCceeeEEeeccccccChHHHHHHHHHHHhhhhhhhCCcceeEEEEecCCceeeeccccccccchhhhccccC
Q 030082 1 MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRG 80 (183)
Q Consensus 1 ~kka~v~~fp~~~~Lvs~E~~qiss~aLEAARi~~nkyl~k~~Gk~~f~l~IRv~P~~vir~nkmls~agAdRlq~GMr~ 80 (183)
+|+|+ ||||+|++|+|+|++||||+||||||+|+||||++.+|+|+||||||+|||||||+|| |+|||+
T Consensus 35 ~~~a~-~~fp~~~~L~a~E~~~Its~qIEAaRia~nR~lkr~~Gk~~fklwIRifP~~~it~kp----------etrMg~ 103 (157)
T 1ffk_F 35 NNGAG-PTYPAQVENVVEKPVQIRHNALEAARNAANRFVQNSGAAANYKFRIRKFPFHVIREQD----------GDGMRA 103 (157)
T ss_pred CCCcc-ccCCEEEEEEECccccCCHHHHHHHHHHHHHHHHhhcCCcccEEEEEECCCeeeEecc----------cccccC
Confidence 47888 9999999999999999999999999999999999977999999999999999999999 899999
Q ss_pred CCCCcceEEEEeeCCCEEEEEEeeCCCHHHHHHHHHHccccCCCceEEEEecCC
Q 030082 81 AFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKW 134 (183)
Q Consensus 81 akGkp~g~vArV~~Gqiifei~~~~~~~~~a~eALrrA~~KlP~~~kIv~~~~~ 134 (183)
|||+|+||||+|++|||||||++++ +++|+|||++|++|||++|+|+++++.
T Consensus 104 gkG~p~~wvArVk~G~ilfei~gv~--~~~A~eAlr~A~~KlP~ktkiv~~~~~ 155 (157)
T 1ffk_F 104 PFGKSVGTAARSHGANHDFIAWVNP--DPAVEFAWRRAYMKVTPTVNIDSSPAG 155 (157)
T ss_pred CCCCccEEEEEEcCCCEEEEEeccC--HHHHHHHHHHHHhhCCCcEEEEEecCC
Confidence 9999999999999999999999984 479999999999999999999998763
No 9
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
Probab=100.00 E-value=5.5e-41 Score=266.18 Aligned_cols=106 Identities=22% Similarity=0.251 Sum_probs=100.7
Q ss_pred eeeEEeeccccccChHHHHHHHHHHHhhhhhhhCCcceeEEEEecCCceeeeccccccccchhhhccccCCCCCcceEEE
Q 030082 11 FCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCA 90 (183)
Q Consensus 11 ~~~~Lvs~E~~qiss~aLEAARi~~nkyl~k~~Gk~~f~l~IRv~P~~vir~nkmls~agAdRlq~GMr~akGkp~g~vA 90 (183)
.+++|+|+|++||||+||||||+|+||||++ .| ++|||+|||||||+|| +++|||+|||+|++|||
T Consensus 29 G~~gL~a~e~~~it~~qiEaaR~ai~R~lkr-~g----k~wirv~P~~pvt~k~---------~etRMGkGKG~~~~wva 94 (136)
T 3r8s_M 29 GSFGLKAVGRGRLTARQIEAARRAMTRAVKR-QG----KIWIRVFPDKPITEKP---------LAVRMGKGKGNVEYWVA 94 (136)
T ss_dssp SSEEEEECSCEEEEHHHHHHHHHHHHHTTCS-CS----EEEECCCCCEEEEECC---------SSCCSCSSCCEEEEEEE
T ss_pred ceEEEEECcCCeECHHHHHHHHHHHHHhhhc-Cc----EEEEEECCCCceEeCc---------hhccCCCCCCCCCEEEE
Confidence 4689999999999999999999999999976 55 7999999999999999 88999999999999999
Q ss_pred EeeCCCEEEEEEeeCCCHHHHHHHHHHccccCCCceEEEEec
Q 030082 91 RVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR 132 (183)
Q Consensus 91 rV~~Gqiifei~~~~~~~~~a~eALrrA~~KlP~~~kIv~~~ 132 (183)
+|++|||||||.++ ++++|+|||++|++|||++|+|++.+
T Consensus 95 ~Vk~G~ilfEi~g~--~~~~A~eAlr~a~~KLP~~~kiv~~~ 134 (136)
T 3r8s_M 95 LIQPGKVLYEMDGV--PEELAREAFKLAAAKLPIKTTFVTKT 134 (136)
T ss_dssp EECTTCEEEEEESS--CHHHHHHHHHHHHTTCSSCEEEEECC
T ss_pred EECCCCEEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 99999999999996 88999999999999999999999764
No 10
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=100.00 E-value=5.2e-41 Score=260.53 Aligned_cols=103 Identities=17% Similarity=0.226 Sum_probs=95.8
Q ss_pred eeEEeeccccccChHHHHHHHHHHHhhhhhhhCCcceeEEEEecCCceeeeccccccccchhhhccccCCCCCcceEEEE
Q 030082 12 CVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCAR 91 (183)
Q Consensus 12 ~~~Lvs~E~~qiss~aLEAARi~~nkyl~k~~Gk~~f~l~IRv~P~~vir~nkmls~agAdRlq~GMr~akGkp~g~vAr 91 (183)
+++|+|+|++||||+||||||+|+||||.+ +.+||+|||+|||||||.+| ++++||+|||+|++|||+
T Consensus 16 ~~gL~a~e~~~it~~qiEaaR~ai~r~l~~---k~~~~~wirv~P~~pvt~k~---------~e~RMG~GKG~~~~wva~ 83 (118)
T 2ftc_I 16 NFAILALGGGYLHWGHFEMMRLTINRSMDP---KNMFAIWRVPAPFKPITRKS---------VGHRMGGGKGAIDHYVTP 83 (118)
T ss_pred eEEEEECcCCccCHHHHHHHHHHHHheeec---cCCeEEEEEECCCcccCcCc---------hhcccccCCCCccEEEEE
Confidence 579999999999999999999999999943 23579999999999999888 789999999999999999
Q ss_pred eeCCCEEEEEEeeCCCHHHHHHHHHHccccCCCceE
Q 030082 92 VAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQK 127 (183)
Q Consensus 92 V~~Gqiifei~~~~~~~~~a~eALrrA~~KlP~~~k 127 (183)
|++|||||||++. .++++|+|||++|++|||++|+
T Consensus 84 Vk~G~ilfEi~g~-~~~~~a~eAlr~a~~KlP~~~~ 118 (118)
T 2ftc_I 84 VKAGRLVVEMGGR-CEFEEVQGFLDQVAHKLPFAAK 118 (118)
T ss_pred ECCCCEEEEEecc-CCHHHHHHHHHHHHhhCCCCCC
Confidence 9999999999993 6899999999999999999984
No 11
>3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=100.00 E-value=1.2e-40 Score=263.88 Aligned_cols=104 Identities=25% Similarity=0.270 Sum_probs=98.2
Q ss_pred eeEEeeccccccChHHHHHHHHHHHhhhhhhhCCcceeEEEEecCCceeeeccccccccchhhhccccCCCCCcceEEEE
Q 030082 12 CVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCAR 91 (183)
Q Consensus 12 ~~~Lvs~E~~qiss~aLEAARi~~nkyl~k~~Gk~~f~l~IRv~P~~vir~nkmls~agAdRlq~GMr~akGkp~g~vAr 91 (183)
+++|+|+|++||||+||||||+|+||||+ ++||+|||+|||||||.+| ++++||+|||+|++|||+
T Consensus 31 ~~gL~a~e~~~it~~qiEaaR~ai~R~lk-----~~~k~wirv~P~~pvt~k~---------~e~RMG~GKG~~~~wva~ 96 (135)
T 3bbo_O 31 RYALQALEPAWITSRQIEAGRRAMTRNAR-----RGGKIWVRIFPDKPVTVRP---------AETRMGSGKGSPEYWVAV 96 (135)
T ss_dssp SEEEEESSCCCCCHHHHHHHHHHHHHTTC-----SSSCCCCCCCCCSCCCCCC---------SSCCSSCCCSCSSCCCCC
T ss_pred eEEEEECcCCccCHHHHHHHHHHHHHHhh-----hCcEEEEEeCCCcccEecc---------ccccccccCCCceEEEEE
Confidence 68999999999999999999999999995 3569999999999999888 889999999999999999
Q ss_pred eeCCCEEEEEEeeCCCHHHHHHHHHHccccCCCceEEEEe
Q 030082 92 VAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVS 131 (183)
Q Consensus 92 V~~Gqiifei~~~~~~~~~a~eALrrA~~KlP~~~kIv~~ 131 (183)
|++|||||||+++ ++++|+|||++|++|||++|+|+++
T Consensus 97 Vk~G~ilfEi~gv--~~~~A~eAlr~a~~KLP~~~kiv~~ 134 (135)
T 3bbo_O 97 VKPGRILYEISGV--AENIARRAVAIAASKMPIRTQFIIS 134 (135)
T ss_dssp CCTTCEEEEECSS--CTTHHHHHHHHHHHHCSSCEEEECC
T ss_pred ECCCCEEEEEecC--CHHHHHHHHHHHHhhCCCcEEEEec
Confidence 9999999999995 7799999999999999999999864
No 12
>2zjr_J 50S ribosomal protein L16; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.41.4.2 PDB: 1sm1_K* 2zjp_J* 2zjq_J 1nkw_K 3cf5_J* 3dll_J* 3pio_J* 1njm_K* 1nwx_K* 1njp_K* 1xbp_K* 1y69_K 1nwy_K* 3pip_J* 1pnu_K 1pny_K 1vor_N 1vou_N 1vow_N 1voy_N ...
Probab=100.00 E-value=2.3e-40 Score=264.26 Aligned_cols=106 Identities=23% Similarity=0.265 Sum_probs=100.0
Q ss_pred eeEEeeccccccChHHHHHHHHHHHhhhhhhhCCcceeEEEEecCCceeeeccccccccchhhhccccCCCCCcceEEEE
Q 030082 12 CVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCAR 91 (183)
Q Consensus 12 ~~~Lvs~E~~qiss~aLEAARi~~nkyl~k~~Gk~~f~l~IRv~P~~vir~nkmls~agAdRlq~GMr~akGkp~g~vAr 91 (183)
+++|+|+|++||||+||||||+|+||||++ +||+|||+|||||||+|| ++++|++|+|+|++|||+
T Consensus 32 ~~gL~a~e~~~it~~qiEAaR~ai~R~lkr-----~gk~wirv~P~~pvt~Kp---------~e~RMG~GKG~~~~wva~ 97 (142)
T 2zjr_J 32 DYGLIAMEPAWIKSNQIEACRIVMSRHFRR-----GGKIYIRIFPDKPVTKKP---------AETRMGKGKGAVEYWVSV 97 (142)
T ss_dssp SCEEEECSCBCCBHHHHHHHHHHHHHHCSS-----CCCCCCCCCCCCEECCCS---------SSCCCSSSCCTTSEEBCC
T ss_pred eEEEEECcCCeECHHHHHHHHHHHHHHhhh-----CcEEEEEeCCCcceEcCc---------ccccccccCCCCCEEEEE
Confidence 579999999999999999999999999976 458999999999999999 789999999999999999
Q ss_pred eeCCCEEEEEEeeCCCHHHHHHHHHHccccCCCceEEEEecC
Q 030082 92 VAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRK 133 (183)
Q Consensus 92 V~~Gqiifei~~~~~~~~~a~eALrrA~~KlP~~~kIv~~~~ 133 (183)
|++|||||||+++ ++++|+|||++|++|||++|+|++++.
T Consensus 98 Vk~G~ilfEi~gv--~~~~A~eAlr~A~~KLP~~~kiv~~~~ 137 (142)
T 2zjr_J 98 VKPGRVMFEVAGV--TEEQAKEAFRLAGHKLPIQTKMVKREV 137 (142)
T ss_dssp BCTTEEEECCCSS--CSTTTTTHHHHHHHTCSSCEEEECSCC
T ss_pred ECCCCEEEEEeCC--CHHHHHHHHHHHHhhCCCcEEEEEecc
Confidence 9999999999995 779999999999999999999998763
No 13
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=43.92 E-value=3.9 Score=27.33 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=21.2
Q ss_pred EEeeCCCEEEEEEeeCC---CHHHHHHHHHHc
Q 030082 90 ARVAIGQVLLSVRCKDS---NSLHAQEALRRA 118 (183)
Q Consensus 90 ArV~~Gqiifei~~~~~---~~~~a~eALrrA 118 (183)
+.+++|++|.+|.+.+. +.+.+.+.++.+
T Consensus 45 agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~ 76 (87)
T 4e34_A 45 GGLHVGDAILAVNGVNLRDTKHKEAVTILSQQ 76 (87)
T ss_dssp SCCCTTEEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 46789999999988753 446667777654
No 14
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=41.29 E-value=13 Score=26.14 Aligned_cols=42 Identities=31% Similarity=0.411 Sum_probs=27.5
Q ss_pred EeeCCCEEEEEEeeCC-C--HHHHHHHHHHccccCCCceEEEEecC
Q 030082 91 RVAIGQVLLSVRCKDS-N--SLHAQEALRRAKFKFPGRQKIIVSRK 133 (183)
Q Consensus 91 rV~~Gqiifei~~~~~-~--~~~a~eALrrA~~KlP~~~kIv~~~~ 133 (183)
++++|++|.+|.+.+. + .+.+.+.|+.+..+ +....+.+.+.
T Consensus 51 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~-~~~v~l~v~R~ 95 (108)
T 3cbz_A 51 RIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHK-PGPIVLTVAKS 95 (108)
T ss_dssp CCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTS-SSCEEEEEECC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhcccC-CCeEEEEEEeC
Confidence 5789999999988653 2 46777777776321 23455655554
No 15
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=38.96 E-value=18 Score=25.61 Aligned_cols=40 Identities=23% Similarity=0.246 Sum_probs=26.1
Q ss_pred EeeCCCEEEEEEeeCCC---HHHHHHHHHHccccCCCceEEEE
Q 030082 91 RVAIGQVLLSVRCKDSN---SLHAQEALRRAKFKFPGRQKIIV 130 (183)
Q Consensus 91 rV~~Gqiifei~~~~~~---~~~a~eALrrA~~KlP~~~kIv~ 130 (183)
++++|+.|++|.+.+.. .+.+.+.|+.+..+--....+.+
T Consensus 59 ~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~r~~~~~~l~v 101 (109)
T 1wi4_A 59 RLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAF 101 (109)
T ss_dssp SCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHccccCCCceEEEEE
Confidence 58899999999987532 56777788777633223333433
No 16
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=38.51 E-value=6.2 Score=26.84 Aligned_cols=39 Identities=15% Similarity=0.423 Sum_probs=26.7
Q ss_pred EeeCCCEEEEEEeeCC---CHHHHHHHHHHccccCCCceEEEEecC
Q 030082 91 RVAIGQVLLSVRCKDS---NSLHAQEALRRAKFKFPGRQKIIVSRK 133 (183)
Q Consensus 91 rV~~Gqiifei~~~~~---~~~~a~eALrrA~~KlP~~~kIv~~~~ 133 (183)
++++|++|.+|.+.+. +.+.+.+.++.+. ....+.+.+.
T Consensus 39 ~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~----~~v~L~v~~~ 80 (88)
T 3e17_A 39 NLHEGDIILKINGTVTENMSLTDARKLIEKSR----GKLQLVVLRD 80 (88)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHHTT----TEEEEEECCC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC----CeEEEEEeCC
Confidence 5789999999988754 5667777777653 4555555443
No 17
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=37.08 E-value=37 Score=22.37 Aligned_cols=37 Identities=14% Similarity=0.379 Sum_probs=24.1
Q ss_pred eeCCCEEEEEEeeCCC---HHHHHHHHHHccccCCCceEEEEec
Q 030082 92 VAIGQVLLSVRCKDSN---SLHAQEALRRAKFKFPGRQKIIVSR 132 (183)
Q Consensus 92 V~~Gqiifei~~~~~~---~~~a~eALrrA~~KlP~~~kIv~~~ 132 (183)
+++|++|.+|.+.+.. .+.+.+.|+.+. ....+.+.+
T Consensus 44 L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~----~~v~l~v~R 83 (87)
T 2pa1_A 44 LRPGDIIVAINGESAEGMLHAEAQSKIRQSP----SPLRLQLDR 83 (87)
T ss_dssp CCTTCEEEEETTEESTTCCHHHHHHHHHTCC----SSEEEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcCC----CeEEEEEEe
Confidence 6889999999987543 366666666543 344554443
No 18
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=36.78 E-value=16 Score=25.28 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=23.8
Q ss_pred CcceEEEEeeCCCEEEEEEeeCC---CHHHHHHHHHHc
Q 030082 84 KPQGTCARVAIGQVLLSVRCKDS---NSLHAQEALRRA 118 (183)
Q Consensus 84 kp~g~vArV~~Gqiifei~~~~~---~~~~a~eALrrA 118 (183)
.|...++.+++|++|.+|.+.+. +.+.+.+.|+.+
T Consensus 48 spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~ 85 (101)
T 2yt7_A 48 GPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRET 85 (101)
T ss_dssp STTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHT
T ss_pred CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 33333345789999999998764 556677777653
No 19
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=36.35 E-value=17 Score=26.37 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=20.1
Q ss_pred eeCCCEEEEEEeeCCC---HHHHHHHHHHc
Q 030082 92 VAIGQVLLSVRCKDSN---SLHAQEALRRA 118 (183)
Q Consensus 92 V~~Gqiifei~~~~~~---~~~a~eALrrA 118 (183)
+++|++|.+|.+.+.. .+.+.++|+.+
T Consensus 78 L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~ 107 (123)
T 2iwq_A 78 LKPGDRIVEVDGMDLRDASHEQAVEAIRKA 107 (123)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 7899999999987543 46677777665
No 20
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=35.79 E-value=47 Score=22.36 Aligned_cols=27 Identities=11% Similarity=0.212 Sum_probs=19.8
Q ss_pred eeCCCEEEEEEeeCCCH---HHHHHHHHHc
Q 030082 92 VAIGQVLLSVRCKDSNS---LHAQEALRRA 118 (183)
Q Consensus 92 V~~Gqiifei~~~~~~~---~~a~eALrrA 118 (183)
+++|++|.+|.+.+... +.+.++|+..
T Consensus 55 L~~GD~I~~ing~~v~~~~~~~~~~~l~~~ 84 (96)
T 2ego_A 55 LTPGDTIASVNGLNVEGIRHREIVDIIKAS 84 (96)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHHT
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 68899999999875433 6666667664
No 21
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=35.09 E-value=44 Score=22.20 Aligned_cols=37 Identities=8% Similarity=0.126 Sum_probs=24.2
Q ss_pred eeCCCEEEEEEeeCC---CHHHHHHHHHHccccCCCceEEEEec
Q 030082 92 VAIGQVLLSVRCKDS---NSLHAQEALRRAKFKFPGRQKIIVSR 132 (183)
Q Consensus 92 V~~Gqiifei~~~~~---~~~~a~eALrrA~~KlP~~~kIv~~~ 132 (183)
+++|++|.+|.+.+. +.+.+.++|+.+ .....+.+.+
T Consensus 45 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~----g~~v~l~v~r 84 (91)
T 2vsp_A 45 LEDEDVIIEVNGVNVLDEPYEKVVDRIQSS----GKNVTLLVCG 84 (91)
T ss_dssp CCTTCEEEEETTEECTTSCHHHHHHHHTTS----CSEEEEEEEC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCEEEEEEEe
Confidence 688999999998765 456666666543 3344555443
No 22
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=34.85 E-value=15 Score=25.89 Aligned_cols=28 Identities=14% Similarity=0.329 Sum_probs=20.4
Q ss_pred EeeCCCEEEEEEeeCCC---HHHHHHHHHHc
Q 030082 91 RVAIGQVLLSVRCKDSN---SLHAQEALRRA 118 (183)
Q Consensus 91 rV~~Gqiifei~~~~~~---~~~a~eALrrA 118 (183)
++++|++|.+|.+.+.. .+.+.+.|+.+
T Consensus 54 ~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~ 84 (97)
T 2ejy_A 54 SLHVGDEILEINGTNVTNHSVDQLQKAMKET 84 (97)
T ss_dssp CCCTTCEEEEETTBCCCSSCSHHHHHHHHHC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 37889999999887654 46666777654
No 23
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=34.57 E-value=19 Score=24.57 Aligned_cols=37 Identities=24% Similarity=0.281 Sum_probs=23.8
Q ss_pred eeCCCEEEEEEeeCCC---HHHHHHHHHHccccCCCceEEEEec
Q 030082 92 VAIGQVLLSVRCKDSN---SLHAQEALRRAKFKFPGRQKIIVSR 132 (183)
Q Consensus 92 V~~Gqiifei~~~~~~---~~~a~eALrrA~~KlP~~~kIv~~~ 132 (183)
+++|++|.+|.+.+.. .+.+.++|+.+ +....+.+.+
T Consensus 58 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~----~~~v~l~v~r 97 (103)
T 2fcf_A 58 LKPGDRIVEVDGMDLRDASHEQAVEAIRKA----GNPVVFMVQS 97 (103)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHTC----CSSEEEEEEC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhC----CCcEEEEEEE
Confidence 7889999999887532 45566666544 4455555443
No 24
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=33.21 E-value=9.5 Score=25.88 Aligned_cols=36 Identities=11% Similarity=0.106 Sum_probs=24.1
Q ss_pred CcceEEEEeeCCCEEEEEEeeCC---CHHHHHHHHHHcc
Q 030082 84 KPQGTCARVAIGQVLLSVRCKDS---NSLHAQEALRRAK 119 (183)
Q Consensus 84 kp~g~vArV~~Gqiifei~~~~~---~~~~a~eALrrA~ 119 (183)
.|..-.+.+++|+.|.+|.+.+. +.+.+.+.|+.+.
T Consensus 36 spA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~ 74 (88)
T 1kwa_A 36 GMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMR 74 (88)
T ss_dssp SHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCC
T ss_pred CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence 34433345789999999988754 4566667776653
No 25
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=32.99 E-value=52 Score=22.07 Aligned_cols=38 Identities=13% Similarity=0.386 Sum_probs=23.6
Q ss_pred EeeCCCEEEEEEeeCCCH---HHHHHHHHHccccCCCceEEEEec
Q 030082 91 RVAIGQVLLSVRCKDSNS---LHAQEALRRAKFKFPGRQKIIVSR 132 (183)
Q Consensus 91 rV~~Gqiifei~~~~~~~---~~a~eALrrA~~KlP~~~kIv~~~ 132 (183)
-+++|++|.+|.+.+... +.+.++++.. +....+.+.+
T Consensus 47 GL~~GD~I~~ing~~v~~~~~~~~~~~l~~~----~~~v~l~v~R 87 (94)
T 1vb7_A 47 DLRPGDIIVAINGQSAENMLHAEAQSKIRQS----ASPLRLQLDR 87 (94)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHHHHHHHTC----CSSEEEEEEC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhC----CCcEEEEEEE
Confidence 478999999999875432 4555555543 2344555544
No 26
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=32.39 E-value=19 Score=25.97 Aligned_cols=39 Identities=15% Similarity=0.328 Sum_probs=25.6
Q ss_pred EEeeCCCEEEEEEeeCCC---HHHHHHHHHHccccCCCceEEEEec
Q 030082 90 ARVAIGQVLLSVRCKDSN---SLHAQEALRRAKFKFPGRQKIIVSR 132 (183)
Q Consensus 90 ArV~~Gqiifei~~~~~~---~~~a~eALrrA~~KlP~~~kIv~~~ 132 (183)
..+++|++|.+|.+.+.. .+.+.+.++.+. ....+.+.+
T Consensus 70 ggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~----~~v~l~v~r 111 (120)
T 2iwo_A 70 QKLRVGDRIVTICGTSTEGMTHTQAVNLLKNAS----GSIEMQVVA 111 (120)
T ss_dssp TCCCTTCEEEEETTEECTTCBHHHHHHHHHHCC----SEEEEEEEC
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC----CeEEEEEEE
Confidence 367899999999987542 466667777653 334554443
No 27
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=32.04 E-value=28 Score=24.52 Aligned_cols=43 Identities=12% Similarity=0.182 Sum_probs=27.8
Q ss_pred EeeCCCEEEEEEeeCCC---HHHHHHHHHHccccCCCceEEEEecC
Q 030082 91 RVAIGQVLLSVRCKDSN---SLHAQEALRRAKFKFPGRQKIIVSRK 133 (183)
Q Consensus 91 rV~~Gqiifei~~~~~~---~~~a~eALrrA~~KlP~~~kIv~~~~ 133 (183)
.+++|++|.+|.+.+.. .+.+.+.++.+.........+.+.+.
T Consensus 60 GL~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~~~~~~v~l~v~R~ 105 (119)
T 2cs5_A 60 RLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPN 105 (119)
T ss_dssp CCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEEECC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCCEEEEEEEcc
Confidence 57899999999987542 35666777766443333455555543
No 28
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=30.03 E-value=22 Score=25.45 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=20.0
Q ss_pred EeeCCCEEEEEEeeCC---CHHHHHHHHHHc
Q 030082 91 RVAIGQVLLSVRCKDS---NSLHAQEALRRA 118 (183)
Q Consensus 91 rV~~Gqiifei~~~~~---~~~~a~eALrrA 118 (183)
++++|++|.+|.+.+. +.+.+.+.++.+
T Consensus 72 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~ 102 (117)
T 2byg_A 72 RLQVGDRLLMVNNYSLEEVTHEEAVAILKNT 102 (117)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 4889999999998754 355666666543
No 29
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=36.07 E-value=11 Score=27.04 Aligned_cols=24 Identities=25% Similarity=0.641 Sum_probs=17.4
Q ss_pred CCcceEEEEeeCCCEEEEEEeeCC
Q 030082 83 GKPQGTCARVAIGQVLLSVRCKDS 106 (183)
Q Consensus 83 Gkp~g~vArV~~Gqiifei~~~~~ 106 (183)
|.|..-.|.+++|++|.+|.+.+.
T Consensus 63 ~spA~~~aGL~~GD~Il~ING~~v 86 (112)
T 2lob_A 63 GQPADRCGGLHVGDAILAVNGVNL 86 (112)
Confidence 344444466899999999998643
No 30
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=29.87 E-value=68 Score=21.85 Aligned_cols=29 Identities=10% Similarity=0.142 Sum_probs=19.1
Q ss_pred EeeCCCEEEEEEeeCC---CHHHHHHHHHHcc
Q 030082 91 RVAIGQVLLSVRCKDS---NSLHAQEALRRAK 119 (183)
Q Consensus 91 rV~~Gqiifei~~~~~---~~~~a~eALrrA~ 119 (183)
|+++|++|.+|.+.+. ..+.+.+.++.+.
T Consensus 62 rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~ 93 (107)
T 3nfk_A 62 RLNEGDQVVLINGRDIAEHTHDQVVLFIKASC 93 (107)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHCGG
T ss_pred ccCCCCEEEEECCEECCCCCHHHHHHHHHhcc
Confidence 3789999999987643 2345555565543
No 31
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=29.74 E-value=31 Score=24.13 Aligned_cols=46 Identities=13% Similarity=0.200 Sum_probs=27.9
Q ss_pred CcceEEEEeeCCCEEEEEEeeCC----CHHHHHHHHHHccccCCCceEEEEecC
Q 030082 84 KPQGTCARVAIGQVLLSVRCKDS----NSLHAQEALRRAKFKFPGRQKIIVSRK 133 (183)
Q Consensus 84 kp~g~vArV~~Gqiifei~~~~~----~~~~a~eALrrA~~KlP~~~kIv~~~~ 133 (183)
.|..-+-++++|++|.+|.+.+. +.+.+.++++.+ .....+.+.+.
T Consensus 60 spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~~----~~~v~l~v~R~ 109 (117)
T 2o2t_A 60 SVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKA----KDTVQLVIARG 109 (117)
T ss_dssp SHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHHC----CSEEEEEEESS
T ss_pred CHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcC----CCEEEEEEEeC
Confidence 34333334899999999988754 456666666653 23445555443
No 32
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.60 E-value=17 Score=24.74 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=20.6
Q ss_pred EeeCCCEEEEEEeeCC--CHHHHHHHHHHc
Q 030082 91 RVAIGQVLLSVRCKDS--NSLHAQEALRRA 118 (183)
Q Consensus 91 rV~~Gqiifei~~~~~--~~~~a~eALrrA 118 (183)
.+++|++|.+|.+.+. +.+.+.+.|+.+
T Consensus 47 ~L~~GD~I~~ing~~v~~~~~~~~~~l~~~ 76 (91)
T 2e7k_A 47 LLHVGDIIKEVNGQPVGSDPRALQELLRNA 76 (91)
T ss_dssp CCCTTCEEEEETTEECTTCHHHHHHHHHTC
T ss_pred CCCCCCEEEEECCEECCCCHHHHHHHHHcC
Confidence 4688999999988754 556666777653
No 33
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=27.85 E-value=32 Score=24.58 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=20.6
Q ss_pred EeeCCCEEEEEEeeCC---CHHHHHHHHHHc
Q 030082 91 RVAIGQVLLSVRCKDS---NSLHAQEALRRA 118 (183)
Q Consensus 91 rV~~Gqiifei~~~~~---~~~~a~eALrrA 118 (183)
++++|++|.+|.+.+. +.+.+.+.++.+
T Consensus 71 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~ 101 (117)
T 2fne_A 71 RLKRGDQIIAVNGQSLEGVTHEEAVAILKRT 101 (117)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 4889999999988754 356666667654
No 34
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=27.74 E-value=20 Score=25.26 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=21.2
Q ss_pred EEeeCCCEEEEEEeeCCC---HHHHHHHHHHc
Q 030082 90 ARVAIGQVLLSVRCKDSN---SLHAQEALRRA 118 (183)
Q Consensus 90 ArV~~Gqiifei~~~~~~---~~~a~eALrrA 118 (183)
+.+++|++|++|.+.+.. .+.+.++++.+
T Consensus 61 ~gL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~ 92 (117)
T 2csj_A 61 GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKS 92 (117)
T ss_dssp HHBCTTCEEEEESSCBCBTCCHHHHHHHHHHS
T ss_pred ccCCCCCEEEEECCEECCCcCHHHHHHHHhcC
Confidence 668999999999987542 35566667654
No 35
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=27.29 E-value=93 Score=21.32 Aligned_cols=39 Identities=21% Similarity=0.428 Sum_probs=24.6
Q ss_pred EeeCCCEEEEEEeeCC---CHHHHHHHHHHccccCCCceEEEEecC
Q 030082 91 RVAIGQVLLSVRCKDS---NSLHAQEALRRAKFKFPGRQKIIVSRK 133 (183)
Q Consensus 91 rV~~Gqiifei~~~~~---~~~~a~eALrrA~~KlP~~~kIv~~~~ 133 (183)
++++|++|.+|.+.+. +...+..+++.+ .....+.+.+.
T Consensus 54 ~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~----~~~v~l~v~R~ 95 (110)
T 1um1_A 54 RLSLGDRILEVNGSSLLGLGYLRAVDLIRHG----GKKMRFLVAKS 95 (110)
T ss_dssp CCCTTCEEEEESSCBCSSCCHHHHHHHHHTC----CSEEEEEEECC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCeEEEEEEeC
Confidence 4889999999998764 244555555443 33445555554
No 36
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=27.20 E-value=82 Score=20.97 Aligned_cols=38 Identities=11% Similarity=0.121 Sum_probs=22.6
Q ss_pred eeCCCEEEEEEeeCCC---HHHHHHHHHHccccCCCceEEEEecC
Q 030082 92 VAIGQVLLSVRCKDSN---SLHAQEALRRAKFKFPGRQKIIVSRK 133 (183)
Q Consensus 92 V~~Gqiifei~~~~~~---~~~a~eALrrA~~KlP~~~kIv~~~~ 133 (183)
+++|++|.+|.+.+.. .+.+.++++.+ .....+.+.+.
T Consensus 48 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~----g~~v~l~v~r~ 88 (96)
T 2v90_A 48 MQAGDRLVAVAGESVEGLGHEETVSRIQGQ----GSCVSLTVVDP 88 (96)
T ss_dssp CCTTEEEEEETTEECTTCCHHHHHHHHHTT----TTEEEEEEECC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCEEEEEEECC
Confidence 6789999999887543 25555555542 23444544443
No 37
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=27.19 E-value=87 Score=22.09 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=24.3
Q ss_pred EeeCCCEEEEEEeeCC---CHHHHHHHHHHccccCCCceEEEEecC
Q 030082 91 RVAIGQVLLSVRCKDS---NSLHAQEALRRAKFKFPGRQKIIVSRK 133 (183)
Q Consensus 91 rV~~Gqiifei~~~~~---~~~~a~eALrrA~~KlP~~~kIv~~~~ 133 (183)
++++|++|.+|.+.+. +.+.+.+.++.+. ....+.+.+.
T Consensus 68 ~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~----~~v~l~v~~~ 109 (114)
T 2gzv_A 68 TVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK----GEVTIHYNKL 109 (114)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHHCC----SEEEEEEECC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC----CeEEEEEEec
Confidence 4889999999988643 4455666665433 3344544443
No 38
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=27.17 E-value=25 Score=24.20 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=17.1
Q ss_pred CCcceEEEEeeCCCEEEEEEeeCC
Q 030082 83 GKPQGTCARVAIGQVLLSVRCKDS 106 (183)
Q Consensus 83 Gkp~g~vArV~~Gqiifei~~~~~ 106 (183)
|.|.. |.+++|++|.+|.+.+.
T Consensus 49 ~spA~--agl~~GD~I~~vng~~v 70 (107)
T 2h2b_A 49 GGPAE--GQLQENDRVAMVNGVSM 70 (107)
T ss_dssp TSTTB--TTBCTTCEEEEETTEEC
T ss_pred CCchh--hCCCCCCEEEEECCEEC
Confidence 45555 67899999999998653
No 39
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=27.04 E-value=36 Score=24.35 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=19.6
Q ss_pred EeeCCCEEEEEEeeCC----CHHHHHHHHHH
Q 030082 91 RVAIGQVLLSVRCKDS----NSLHAQEALRR 117 (183)
Q Consensus 91 rV~~Gqiifei~~~~~----~~~~a~eALrr 117 (183)
++++|++|.+|.+.+. +.+.+.++|+.
T Consensus 72 ~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~ 102 (128)
T 2db5_A 72 RLKENDQILAINHTPLDQNISHQQAIALLQQ 102 (128)
T ss_dssp CCCSSCBEEEESSCBCSTTSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCCHHHHHHHHHc
Confidence 4889999999998754 35556666655
No 40
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.73 E-value=1.1e+02 Score=20.56 Aligned_cols=38 Identities=16% Similarity=0.249 Sum_probs=23.0
Q ss_pred eeCCCEEEEEEeeCCC---HHHHHHHHHHccccCCCceEEEEecC
Q 030082 92 VAIGQVLLSVRCKDSN---SLHAQEALRRAKFKFPGRQKIIVSRK 133 (183)
Q Consensus 92 V~~Gqiifei~~~~~~---~~~a~eALrrA~~KlP~~~kIv~~~~ 133 (183)
+++|++|.+|.+.+.. .+.+.++++.+ .....+.+.+.
T Consensus 48 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~----g~~v~l~v~r~ 88 (102)
T 2d90_A 48 LKNNDLVVAVNGKSVEALDHDGVVEMIRKG----GDQTTLLVLDK 88 (102)
T ss_dssp CCTTCEEEEESSCBCTTSCHHHHHHHHHHS----TTEEEEEECST
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCEEEEEEEEC
Confidence 6889999999987543 24555555542 23344555443
No 41
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=26.70 E-value=94 Score=21.33 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=19.2
Q ss_pred EeeCCCEEEEEEeeCCC---HHHHHHHHHHc
Q 030082 91 RVAIGQVLLSVRCKDSN---SLHAQEALRRA 118 (183)
Q Consensus 91 rV~~Gqiifei~~~~~~---~~~a~eALrrA 118 (183)
++++|++|.+|.+.+.. .+.+.+.|+.+
T Consensus 56 ~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~ 86 (111)
T 2dlu_A 56 RLQTGDHILKIGGTNVQGMTSEQVAQVLRNC 86 (111)
T ss_dssp CCCSSCEEEEESSCCCTTSCHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 37889999999987542 34555666553
No 42
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=26.69 E-value=15 Score=24.79 Aligned_cols=29 Identities=14% Similarity=0.148 Sum_probs=21.4
Q ss_pred EeeCCCEEEEEEeeCC---CHHHHHHHHHHcc
Q 030082 91 RVAIGQVLLSVRCKDS---NSLHAQEALRRAK 119 (183)
Q Consensus 91 rV~~Gqiifei~~~~~---~~~~a~eALrrA~ 119 (183)
++++|++|.+|.+.+. +.+.+.+.|+.+.
T Consensus 46 ~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~ 77 (93)
T 3o46_A 46 LIHVGDELREVNGIPVEDKRPEEIIQILAQSQ 77 (93)
T ss_dssp CCCTTCEEEEETTEESTTSCHHHHHHHHHHCC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 5789999999987654 5567777776643
No 43
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=26.39 E-value=24 Score=23.41 Aligned_cols=32 Identities=16% Similarity=0.302 Sum_probs=20.2
Q ss_pred CCcceEEEEeeCCCEEEEEEeeCCCH---HHHHHHHH
Q 030082 83 GKPQGTCARVAIGQVLLSVRCKDSNS---LHAQEALR 116 (183)
Q Consensus 83 Gkp~g~vArV~~Gqiifei~~~~~~~---~~a~eALr 116 (183)
|.|.. |-+++|++|.+|.+.+... +.+.++|+
T Consensus 36 ~spA~--aGl~~GD~I~~vng~~v~~~~~~~~~~~l~ 70 (88)
T 3bpu_A 36 DSPRS--RGLKEGDLIVEVNKKNVQALTHNQVVDMLV 70 (88)
T ss_dssp C--CC--TTCCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred CChhH--hCCCCCCEEEEECCEEcCCCCHHHHHHHHH
Confidence 45554 5789999999999875432 44444444
No 44
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=25.63 E-value=18 Score=24.01 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=20.9
Q ss_pred EeeCCCEEEEEEeeCC---CHHHHHHHHHHcc
Q 030082 91 RVAIGQVLLSVRCKDS---NSLHAQEALRRAK 119 (183)
Q Consensus 91 rV~~Gqiifei~~~~~---~~~~a~eALrrA~ 119 (183)
++++|++|.+|.+.+. +.+.+.++++.+.
T Consensus 45 ~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~ 76 (90)
T 2q9v_A 45 RLRSGDELISVDGTPVIGKSHQLVVQLMQQAA 76 (90)
T ss_dssp CCCTTCEEEEETTEECTTSCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 4789999999998653 3456666676653
No 45
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=25.63 E-value=72 Score=21.02 Aligned_cols=26 Identities=8% Similarity=0.192 Sum_probs=16.2
Q ss_pred eeCCCEEEEEEeeCCCH---HHHHHHHHH
Q 030082 92 VAIGQVLLSVRCKDSNS---LHAQEALRR 117 (183)
Q Consensus 92 V~~Gqiifei~~~~~~~---~~a~eALrr 117 (183)
+++|++|.+|.+.+... +.+.++|+.
T Consensus 46 l~~GD~I~~ing~~v~~~~~~~~~~~l~~ 74 (90)
T 2he4_A 46 LRAQDRLIEVNGQNVEGLRHAEVVASIKA 74 (90)
T ss_dssp CCTTCEEEEETTEECTTSCHHHHHHHHTT
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 57889999998764322 344444443
No 46
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=24.59 E-value=66 Score=23.15 Aligned_cols=51 Identities=20% Similarity=0.161 Sum_probs=28.5
Q ss_pred eeCCCEEEEEEeeCCC-H--HHHHHHHHHccccCCCceEEEEecCCcccccChHHHHHhhhcC
Q 030082 92 VAIGQVLLSVRCKDSN-S--LHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSEN 151 (183)
Q Consensus 92 V~~Gqiifei~~~~~~-~--~~a~eALrrA~~KlP~~~kIv~~~~~gft~~~~~e~~~~~~~~ 151 (183)
+++|++|.+|.+.+.. . +.+.++|..... .....+.+.+. .++|..+++.|
T Consensus 69 L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~--g~~v~l~v~R~-------~~~~~~~~~~g 122 (124)
T 3tsv_A 69 LEEGDQILRVNNVDFTNIIREEAVLFLLDLPK--GEEVTILAQKK-------KDVYRRIVESD 122 (124)
T ss_dssp CCTTEEEEEETTEECSSCCHHHHHHHHHHSCT--TCEEEEEEEEC-------HHHHHHHTC--
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhcCC--CCEEEEEEEEC-------CchhhhhHhcc
Confidence 7889999999887532 2 556666654322 12334444332 35666665543
No 47
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=24.21 E-value=38 Score=23.55 Aligned_cols=39 Identities=23% Similarity=0.264 Sum_probs=25.5
Q ss_pred EeeCCCEEEEEEeeCC---CHHHHHHHHHHccccCCCceEEEEecC
Q 030082 91 RVAIGQVLLSVRCKDS---NSLHAQEALRRAKFKFPGRQKIIVSRK 133 (183)
Q Consensus 91 rV~~Gqiifei~~~~~---~~~~a~eALrrA~~KlP~~~kIv~~~~ 133 (183)
++++|++|.+|.+.+. ..+.+.++++.+ +....+.+.+.
T Consensus 50 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~----~~~v~l~v~R~ 91 (106)
T 4amh_A 50 KLQIGDKLLAVNNVALEEVTHEEAVTALKNT----SDFVYLKVAKP 91 (106)
T ss_dssp CCCTTCEEEEETTEECSSCCHHHHHHHHHSC----CSEEEEEEECC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHhCC----CCeEEEEEEeC
Confidence 4889999999988653 345566666543 34556666554
No 48
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=24.20 E-value=36 Score=22.61 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=17.7
Q ss_pred EeeCCCEEEEEEeeCCC---HHHHHHHHHH
Q 030082 91 RVAIGQVLLSVRCKDSN---SLHAQEALRR 117 (183)
Q Consensus 91 rV~~Gqiifei~~~~~~---~~~a~eALrr 117 (183)
++++|++|.+|.+.+.. ...+.+.++.
T Consensus 51 ~l~~GD~I~~vng~~v~~~~~~~~~~~~~~ 80 (94)
T 2fe5_A 51 RLQIGDRLLAVNNTNLQDVRHEEAVASLKN 80 (94)
T ss_dssp CCCTTCEEEEETTEECTTCBHHHHHHHHHT
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 37899999999886542 2344444543
No 49
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=23.94 E-value=42 Score=23.47 Aligned_cols=28 Identities=14% Similarity=0.300 Sum_probs=19.4
Q ss_pred EEeeCCCEEEEEEeeCCCH---HHHHHHHHH
Q 030082 90 ARVAIGQVLLSVRCKDSNS---LHAQEALRR 117 (183)
Q Consensus 90 ArV~~Gqiifei~~~~~~~---~~a~eALrr 117 (183)
|.+++|++|.+|.+.+... +.+.++|+.
T Consensus 60 agL~~GD~I~~ing~~v~~~~~~~~~~~l~~ 90 (114)
T 1uew_A 60 AKLKVGDRILAVNGQSIINMPHADIVKLIKD 90 (114)
T ss_dssp SSCCTTCBEEEETTBCTTTSCHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 4578999999999875432 555555654
No 50
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=23.62 E-value=20 Score=24.71 Aligned_cols=38 Identities=24% Similarity=0.303 Sum_probs=22.5
Q ss_pred EeeCCCEEEEEEeeCCC---HHHHHHHHHHccccCCCceEEEEec
Q 030082 91 RVAIGQVLLSVRCKDSN---SLHAQEALRRAKFKFPGRQKIIVSR 132 (183)
Q Consensus 91 rV~~Gqiifei~~~~~~---~~~a~eALrrA~~KlP~~~kIv~~~ 132 (183)
++++|++|.+|.+.+.. ...+..+++.+ .....+.+.+
T Consensus 51 ~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~----~~~v~l~v~R 91 (105)
T 2awx_A 51 KLQIGDKLLAVNSVSLEEVTHEEAVTALKNT----SDFVYLKVAK 91 (105)
T ss_dssp CCCTTCEEEEETTEECTTCBHHHHHHHHHSC----CSEEEEEEEC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCeEEEEEEc
Confidence 48899999999886542 33444444432 2344555544
No 51
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=23.51 E-value=41 Score=22.98 Aligned_cols=26 Identities=12% Similarity=0.233 Sum_probs=18.1
Q ss_pred eeCCCEEEEEEeeCC---CHHHHHHHHHH
Q 030082 92 VAIGQVLLSVRCKDS---NSLHAQEALRR 117 (183)
Q Consensus 92 V~~Gqiifei~~~~~---~~~~a~eALrr 117 (183)
+++|++|.+|.+.+. +.+.+.+.++.
T Consensus 49 L~~GD~Il~Ing~~v~~~~~~~~~~~l~~ 77 (90)
T 1y7n_A 49 VRVGHRIIEINGQSVVATPHEKIVHILSN 77 (90)
T ss_dssp CCSSCEEEEETTEECTTSCHHHHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 567888988887754 45566666664
No 52
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=23.05 E-value=18 Score=25.61 Aligned_cols=28 Identities=7% Similarity=0.086 Sum_probs=18.7
Q ss_pred EeeCCCEEEEEEeeCC---CHHHHHHHHHHc
Q 030082 91 RVAIGQVLLSVRCKDS---NSLHAQEALRRA 118 (183)
Q Consensus 91 rV~~Gqiifei~~~~~---~~~~a~eALrrA 118 (183)
++++|++|.+|.+.+. ..+.+...++.+
T Consensus 43 ~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~ 73 (106)
T 2la8_A 43 KLQRGDIITKFNGDALEGLPFQVCYALFKGA 73 (106)
T ss_dssp TCCTTCEEEEESSCBCSSSCHHHHHHHHHSC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHhCC
Confidence 3789999999998764 334444455443
No 53
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=22.64 E-value=1.2e+02 Score=19.89 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=18.3
Q ss_pred EeeCCCEEEEEEeeCC---CHHHHHHHHHH
Q 030082 91 RVAIGQVLLSVRCKDS---NSLHAQEALRR 117 (183)
Q Consensus 91 rV~~Gqiifei~~~~~---~~~~a~eALrr 117 (183)
++++|++|.+|.+.+. +.+.+...++.
T Consensus 47 ~L~~GD~I~~vng~~v~~~~~~~~~~~~~~ 76 (92)
T 2qg1_A 47 RLMQGDQILMVNGEDVRNATQEAVAALLKC 76 (92)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 4889999999988653 23455555554
No 54
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=22.62 E-value=45 Score=23.13 Aligned_cols=28 Identities=25% Similarity=0.141 Sum_probs=20.6
Q ss_pred EeeCCCEEEEEEeeCC---CHHHHHHHHHHc
Q 030082 91 RVAIGQVLLSVRCKDS---NSLHAQEALRRA 118 (183)
Q Consensus 91 rV~~Gqiifei~~~~~---~~~~a~eALrrA 118 (183)
++++|++|.+|.+.+. +.+.+.+.|+.+
T Consensus 62 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~ 92 (108)
T 2d92_A 62 GLLPGDRLVSVNEYCLDNTSLAEAVEILKAV 92 (108)
T ss_dssp CCCTTCEEEEESSCBCTTCCHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 4789999999998754 245677777664
No 55
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=22.31 E-value=75 Score=21.72 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=19.3
Q ss_pred EeeCCCEEEEEEeeCC---CHHHHHHHHHHc
Q 030082 91 RVAIGQVLLSVRCKDS---NSLHAQEALRRA 118 (183)
Q Consensus 91 rV~~Gqiifei~~~~~---~~~~a~eALrrA 118 (183)
++++|++|.+|.+.+. +...+..+++.+
T Consensus 60 ~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~ 90 (108)
T 1q7x_A 60 RIHKGDRVLAVNGVSLEGATHKQAVETLRNT 90 (108)
T ss_dssp CCCSSCEEEEETTEECBSCTTSHHHHHHHHT
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 4889999999988653 334555666553
No 56
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=22.24 E-value=1.1e+02 Score=19.26 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=18.1
Q ss_pred eeCCCEEEEEEeeCC---CHHHHHHHHHH
Q 030082 92 VAIGQVLLSVRCKDS---NSLHAQEALRR 117 (183)
Q Consensus 92 V~~Gqiifei~~~~~---~~~~a~eALrr 117 (183)
+++|++|.+|.+.+. +.+.+.++|+.
T Consensus 40 l~~GD~I~~ing~~v~~~~~~~~~~~l~~ 68 (81)
T 2rcz_A 40 IQEGDVVLKINGTVTENMSLTDAKTLIER 68 (81)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHC
Confidence 789999999988654 34455555544
No 57
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=22.18 E-value=86 Score=28.30 Aligned_cols=28 Identities=32% Similarity=0.286 Sum_probs=24.4
Q ss_pred EeeCCCEEEEEEeeCCCHHHHHHHHHHc
Q 030082 91 RVAIGQVLLSVRCKDSNSLHAQEALRRA 118 (183)
Q Consensus 91 rV~~Gqiifei~~~~~~~~~a~eALrrA 118 (183)
+|+.||+|+.|....+..+.|.+.++.|
T Consensus 379 ~v~~g~~l~~i~~~~~~~~~a~~~~~~~ 406 (423)
T 2dsj_A 379 RVERGEALALVYHRRRGLEEALGHLREA 406 (423)
T ss_dssp EECTTSEEEEEEECSSSHHHHHHHHHHH
T ss_pred EeCCCCeEEEEEeCCccHHHHHHHHHhC
Confidence 7899999999998877788888888776
No 58
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.09 E-value=1.1e+02 Score=20.01 Aligned_cols=28 Identities=32% Similarity=0.287 Sum_probs=19.1
Q ss_pred EeeCCCEEEEEEeeCCC---HHHHHHHHHHc
Q 030082 91 RVAIGQVLLSVRCKDSN---SLHAQEALRRA 118 (183)
Q Consensus 91 rV~~Gqiifei~~~~~~---~~~a~eALrrA 118 (183)
.+++|++|.+|.+.+.. .+.+.+.++.+
T Consensus 48 gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~ 78 (93)
T 2dkr_A 48 GLKRGDQLLSVNGVSVEGEQHEKAVELLKAA 78 (93)
T ss_dssp CCCTTCBEEEETTEECTTSCHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 37899999999887542 34555555543
No 59
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=21.97 E-value=27 Score=24.01 Aligned_cols=37 Identities=24% Similarity=0.344 Sum_probs=22.1
Q ss_pred eeCCCEEEEEEeeCCC---HHHHHHHHHHccccCCCceEEEEec
Q 030082 92 VAIGQVLLSVRCKDSN---SLHAQEALRRAKFKFPGRQKIIVSR 132 (183)
Q Consensus 92 V~~Gqiifei~~~~~~---~~~a~eALrrA~~KlP~~~kIv~~~ 132 (183)
+++|++|.+|.+.+.. .+.+..+|+.+ .....+.+.+
T Consensus 57 L~~GD~I~~vng~~v~~~~~~~~~~~l~~~----g~~v~l~v~R 96 (105)
T 1wha_A 57 LQVGDRVLSINGVDVTEARHDHAVSLLTAA----SPTIALLLER 96 (105)
T ss_dssp CCTTCEEEEESSCBCTTCCHHHHHHHHTSC----CSCEEEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCeEEEEEEE
Confidence 7899999999987532 34444445432 3344454443
No 60
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=21.94 E-value=28 Score=25.85 Aligned_cols=40 Identities=23% Similarity=0.184 Sum_probs=25.9
Q ss_pred EeeCCCEEEEEEeeCC---CHHHHHHHHHHccccCCC-ceEEEEecC
Q 030082 91 RVAIGQVLLSVRCKDS---NSLHAQEALRRAKFKFPG-RQKIIVSRK 133 (183)
Q Consensus 91 rV~~Gqiifei~~~~~---~~~~a~eALrrA~~KlP~-~~kIv~~~~ 133 (183)
++++|++|.+|.+.+. +.+.+.++|+... |+ ...+.+.+.
T Consensus 67 ~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~---~G~~v~l~V~R~ 110 (126)
T 1wif_A 67 ILQPGDVLISVGHANVLGYTLREFLKLLQNIT---IGTVLQIKAYRG 110 (126)
T ss_dssp SSCTTCBEEEESSSCCTTCCHHHHHHHHTSCC---SSCEEEEEEESS
T ss_pred CCCCCCEEEEECCEEcCCCCHHHHHHHHhcCC---CCCEEEEEEEEC
Confidence 4889999999999865 4555666665322 23 345555555
No 61
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=21.94 E-value=1e+02 Score=20.07 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=19.4
Q ss_pred EeeCCCEEEEEEeeCC---CHHHHHHHHHH
Q 030082 91 RVAIGQVLLSVRCKDS---NSLHAQEALRR 117 (183)
Q Consensus 91 rV~~Gqiifei~~~~~---~~~~a~eALrr 117 (183)
++++|++|.+|.+.+. +.+.+.++|+.
T Consensus 41 ~l~~GD~I~~ing~~v~~~~~~~~~~~l~~ 70 (92)
T 3cyy_A 41 NIQEGDVVLKINGTVTENMSLTDAKTLIER 70 (92)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 3789999999998753 34555566654
No 62
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=21.87 E-value=1.2e+02 Score=20.97 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=23.9
Q ss_pred eeCCCEEEEEEeeCCCH---HHHHHHHHHccccCCCceEEEEec
Q 030082 92 VAIGQVLLSVRCKDSNS---LHAQEALRRAKFKFPGRQKIIVSR 132 (183)
Q Consensus 92 V~~Gqiifei~~~~~~~---~~a~eALrrA~~KlP~~~kIv~~~ 132 (183)
+++|++|.+|.+.+... +.+.++++.+ .....+.+.+
T Consensus 56 L~~GD~I~~ing~~v~~~~~~~~~~~l~~~----g~~v~l~v~R 95 (114)
T 2edz_A 56 LLDGDRVLRINGVFVDKEEHAQVVELVRKS----GNSVTLLVLD 95 (114)
T ss_dssp CCTTCEEEEESSSBCSSSCHHHHHHHHHHT----CSEEEEEEEC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCEEEEEEEE
Confidence 68999999999876433 5666666542 2344555544
No 63
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=21.82 E-value=20 Score=25.60 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=26.7
Q ss_pred EeeCCCEEEEEEeeCC---CHHHHHHHHHHccccCCCceEEEEec
Q 030082 91 RVAIGQVLLSVRCKDS---NSLHAQEALRRAKFKFPGRQKIIVSR 132 (183)
Q Consensus 91 rV~~Gqiifei~~~~~---~~~~a~eALrrA~~KlP~~~kIv~~~ 132 (183)
++++|++|.+|.+.+. +.+.+.+.|+.+. ....+.+.+
T Consensus 63 ~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~----~~v~l~v~r 103 (125)
T 3hpk_A 63 TVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK----GEVTIHYNK 103 (125)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHHSC----SEEEEEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC----CeEEEEEEE
Confidence 5899999999998754 3566777777654 345555554
No 64
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=21.65 E-value=1.3e+02 Score=20.29 Aligned_cols=27 Identities=7% Similarity=0.135 Sum_probs=17.5
Q ss_pred EeeCCCEEEEEEeeCCC---HHHHHHHHHH
Q 030082 91 RVAIGQVLLSVRCKDSN---SLHAQEALRR 117 (183)
Q Consensus 91 rV~~Gqiifei~~~~~~---~~~a~eALrr 117 (183)
-+++|++|.+|.+.+.. .+.+.+.++.
T Consensus 53 GL~~GD~I~~vng~~v~~~~~~~~~~~l~~ 82 (100)
T 1whd_A 53 GLQQLDTVLQLNERPVEHWKCVELAHEIRS 82 (100)
T ss_dssp TCCSSCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 36889999999887542 3444455544
No 65
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=21.63 E-value=34 Score=23.60 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=19.7
Q ss_pred EeeCCCEEEEEEeeCC---CHHHHHHHHHHc
Q 030082 91 RVAIGQVLLSVRCKDS---NSLHAQEALRRA 118 (183)
Q Consensus 91 rV~~Gqiifei~~~~~---~~~~a~eALrrA 118 (183)
++++|++|.+|.+.+. +...+..+++.+
T Consensus 58 ~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~ 88 (107)
T 1wf8_A 58 RIQVNDQIVEVDGISLVGVTQNFAATVLRNT 88 (107)
T ss_dssp SSCTTCBEEEETTEECBSCCHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHhcC
Confidence 4789999999988654 345566666653
No 66
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=21.62 E-value=86 Score=20.85 Aligned_cols=27 Identities=26% Similarity=0.256 Sum_probs=19.1
Q ss_pred EeeCCCEEEEEEeeCC-C--HHHHHHHHHH
Q 030082 91 RVAIGQVLLSVRCKDS-N--SLHAQEALRR 117 (183)
Q Consensus 91 rV~~Gqiifei~~~~~-~--~~~a~eALrr 117 (183)
++++|++|.+|.+.+. + .+.+.++|+.
T Consensus 50 ~l~~GD~I~~ing~~v~~~~~~~~~~~l~~ 79 (97)
T 2jil_A 50 TIKPGDRLLSVDGIRLLGTTHAEAMSILKQ 79 (97)
T ss_dssp CCCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 3789999999988653 2 4566666654
No 67
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=21.44 E-value=39 Score=22.68 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=18.4
Q ss_pred eeCCCEEEEEEeeCCCH---HHHHHHHHH
Q 030082 92 VAIGQVLLSVRCKDSNS---LHAQEALRR 117 (183)
Q Consensus 92 V~~Gqiifei~~~~~~~---~~a~eALrr 117 (183)
+++|++|.+|.+.+... ..+.++++.
T Consensus 56 L~~GD~I~~ing~~v~~~~~~~~~~~l~~ 84 (98)
T 1ihj_A 56 LKVGDRILSLNGKDVRNSTEQAVIDLIKE 84 (98)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHhc
Confidence 78999999999875432 455556654
No 68
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=21.42 E-value=29 Score=23.90 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=20.0
Q ss_pred EeeCCCEEEEEEeeCC---CHHHHHHHHHHc
Q 030082 91 RVAIGQVLLSVRCKDS---NSLHAQEALRRA 118 (183)
Q Consensus 91 rV~~Gqiifei~~~~~---~~~~a~eALrrA 118 (183)
++++|++|.+|.+.+. +.+.+.+.|+.+
T Consensus 52 ~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~ 82 (103)
T 1uep_A 52 RLHPGDELVYVDGIPVAGKTHRYVIDLMHHA 82 (103)
T ss_dssp CCCTTCEEEEETTEECTTSCHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 4789999999988654 245566666654
No 69
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=21.02 E-value=81 Score=26.07 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=16.2
Q ss_pred EeeCCCEEEEEEeeCCCHHHHHHHH
Q 030082 91 RVAIGQVLLSVRCKDSNSLHAQEAL 115 (183)
Q Consensus 91 rV~~Gqiifei~~~~~~~~~a~eAL 115 (183)
+|+.||+|++++.. ..+.+...|
T Consensus 78 ~V~kGq~L~~ld~~--~l~~a~~~l 100 (359)
T 3lnn_A 78 EVKAGDVLFTIDSA--DLAQANSDA 100 (359)
T ss_dssp EECTTCEEEEEECS--SHHHHHHHH
T ss_pred EEcCCCEEEEEChH--HHHHHHHHH
Confidence 78999999999964 344443333
No 70
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=20.82 E-value=92 Score=21.50 Aligned_cols=27 Identities=33% Similarity=0.352 Sum_probs=18.2
Q ss_pred EeeCCCEEEEEEeeCCC---HHHHHHHHHH
Q 030082 91 RVAIGQVLLSVRCKDSN---SLHAQEALRR 117 (183)
Q Consensus 91 rV~~Gqiifei~~~~~~---~~~a~eALrr 117 (183)
++++|++|.+|.+.+.. .+.+.+.++.
T Consensus 61 ~L~~GD~I~~vng~~v~~~~~~~~~~~l~~ 90 (116)
T 2dm8_A 61 RLWAGDQILEVNGVDLRNSSHEEAITALRQ 90 (116)
T ss_dssp CCCTTCEEEEETTEECSSSCHHHHHHHHHT
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence 48899999999887532 3445555544
No 71
>2qzb_A Uncharacterized protein YFEY; structural genomics, unknown function, PSI-2, protein struct initiative; 2.10A {Escherichia coli}
Probab=20.77 E-value=41 Score=27.10 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=29.2
Q ss_pred hhhccccCCCCCcceEEEEeeCCCEEEEEEe
Q 030082 73 RLQTGMRGAFGKPQGTCARVAIGQVLLSVRC 103 (183)
Q Consensus 73 Rlq~GMr~akGkp~g~vArV~~Gqiifei~~ 103 (183)
||.+||.-+=|.+..|..-++-+||.++|.+
T Consensus 44 ~lrsGm~t~~G~~v~~~qA~~~d~v~lvi~G 74 (166)
T 2qzb_A 44 RLRSGMKTANGNVVRFFEVMKGDNVAMVING 74 (166)
T ss_dssp EEEEEEEEETTEEEEEEEEEETTEEEEEEEC
T ss_pred EEeeceecCCCCEEEeeeeecCCcEEEEEEC
Confidence 6779999999999999999999999999998
No 72
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=20.58 E-value=49 Score=22.10 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=18.0
Q ss_pred EeeCCCEEEEEEeeCC---CHHHHHHHHHH
Q 030082 91 RVAIGQVLLSVRCKDS---NSLHAQEALRR 117 (183)
Q Consensus 91 rV~~Gqiifei~~~~~---~~~~a~eALrr 117 (183)
++++|++|.+|.+.+. +.+.+.++++.
T Consensus 51 ~l~~GD~I~~vng~~v~~~~~~~~~~~l~~ 80 (96)
T 1d5g_A 51 RIHKGDRVLAVNGVSLEGATHKQAVETLRN 80 (96)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHS
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 4789999999988754 33445555543
No 73
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=20.33 E-value=1.2e+02 Score=21.12 Aligned_cols=26 Identities=12% Similarity=0.090 Sum_probs=17.2
Q ss_pred eCCCEEEEEEeeCCC---HHHHHHHHHHc
Q 030082 93 AIGQVLLSVRCKDSN---SLHAQEALRRA 118 (183)
Q Consensus 93 ~~Gqiifei~~~~~~---~~~a~eALrrA 118 (183)
++|++|.+|.+.... .+.+.+.|+.+
T Consensus 68 ~~GD~I~~vng~~v~~~~~~~~~~~l~~~ 96 (113)
T 1va8_A 68 HEGDEVLEINGIEIRGKDVNEVFDLLSDM 96 (113)
T ss_dssp CTTCEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 788888888876542 44556666543
No 74
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.14 E-value=49 Score=23.63 Aligned_cols=26 Identities=8% Similarity=0.189 Sum_probs=19.2
Q ss_pred eeCCCEEEEEEeeCC---CHHHHHHHHHH
Q 030082 92 VAIGQVLLSVRCKDS---NSLHAQEALRR 117 (183)
Q Consensus 92 V~~Gqiifei~~~~~---~~~~a~eALrr 117 (183)
+++|++|.+|.+.+. +.+.+.++|+.
T Consensus 79 L~~GD~I~~ing~~v~~~~~~~~~~~l~~ 107 (126)
T 2yuy_A 79 LCTGDRIIKVNGESVIGKTYSQVIALIQN 107 (126)
T ss_dssp CCSSCCCCEETTEECSSCCHHHHHHHHHT
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 788999999988754 45666666664
No 75
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.11 E-value=35 Score=23.26 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=17.0
Q ss_pred CCcceEEEEeeCCCEEEEEEeeCC
Q 030082 83 GKPQGTCARVAIGQVLLSVRCKDS 106 (183)
Q Consensus 83 Gkp~g~vArV~~Gqiifei~~~~~ 106 (183)
|.|.. |.+++|++|.+|.+.+.
T Consensus 41 ~spA~--agL~~GD~Il~ing~~v 62 (96)
T 2edv_A 41 GGSAH--GKLFPGDQILQMNNEPA 62 (96)
T ss_dssp SSSST--TTSCTTCBEEEESSCBS
T ss_pred CCchh--hCCCCCCEEEEECCEEC
Confidence 44552 77899999999998754
Done!