RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 030082
(183 letters)
>3iz5_I 60S ribosomal protein L10 (L10E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_I 1s1i_I 3jyw_I
Length = 224
Score = 248 bits (635), Expect = 6e-85
Identities = 155/183 (84%), Positives = 167/183 (91%)
Query: 1 MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 60
MKKKGVDEFP+CVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLRVRVHPFHVL
Sbjct: 38 MKKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVL 97
Query: 61 RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKF 120
RINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK+SN+ HA+EALRRAKF
Sbjct: 98 RINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKF 157
Query: 121 KFPGRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPLASRQPGRAFLH 180
KFPGRQKII SRKWGFTKF+R +Y++ K+E RI+ DGVNA+LLG HG LA R PG+AFL
Sbjct: 158 KFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRLAKRAPGKAFLA 217
Query: 181 ATA 183
T
Sbjct: 218 ETI 220
>4a17_H RPL10, 60S ribosomal protein L10; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_H 4a1c_H 4a1e_H
Length = 215
Score = 246 bits (630), Expect = 3e-84
Identities = 108/177 (61%), Positives = 135/177 (76%)
Query: 1 MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 60
KK V+EFP+ VH+VS EKE ++SEALEAARIA NK + KF KDAFHLR RVHP+HVL
Sbjct: 38 RKKATVEEFPYVVHIVSDEKEQITSEALEAARIAANKNLIKFISKDAFHLRCRVHPWHVL 97
Query: 61 RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKF 120
RINKMLSCAGADRLQ+GMRGAFGK G ARV IG +L SVR K+ + +A +AL RAK
Sbjct: 98 RINKMLSCAGADRLQSGMRGAFGKALGKAARVDIGSILFSVRVKEPHVKYAIDALTRAKA 157
Query: 121 KFPGRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPLASRQPGRA 177
KFPGRQK++ S+KWGFTK +R+ Y R +++ ++V DG N K++G GPL+ + R
Sbjct: 158 KFPGRQKVVTSQKWGFTKLTRAQYSRLRNQKKLVTDGSNVKVIGERGPLSRLELFRK 214
>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 214
Score = 240 bits (614), Expect = 6e-82
Identities = 113/177 (63%), Positives = 133/177 (75%)
Query: 1 MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 60
KK VDEFP C H+VS E E +SSEALEAARI NKYM K GKD FH+RVR+HPFHV+
Sbjct: 38 RKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVI 97
Query: 61 RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKF 120
RINKMLSCAGADRLQTGMRGAFGKPQGT A+V IGQV++S+R K N H EALRRAKF
Sbjct: 98 RINKMLSCAGADRLQTGMRGAFGKPQGTVAKVHIGQVIMSIRTKLQNKEHVIEALRRAKF 157
Query: 121 KFPGRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPLASRQPGRA 177
KFPGRQKI +S+KWGFTKF+ ++ +E R++PDG K + GPL + +
Sbjct: 158 KFPGRQKIHISKKWGFTKFNADEFENMVAEKRLIPDGCGVKYIPNRGPLDKWRALHS 214
>3j0l_J Ribosomal protein L10; mammalia, translation, elongation cycle,
tRNA, ribosome; 9.80A {Oryctolagus cuniculus} PDB:
3j0q_J 3izc_I 3izs_I 3o58_J 3o5h_J 3u5e_I 3u5i_I
Length = 219
Score = 236 bits (603), Expect = 4e-80
Identities = 110/170 (64%), Positives = 125/170 (73%)
Query: 1 MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 60
KK VDEFP CVHLVS E E +SSEALEAARI NKYM +G+DAFHLRVRVHPFHVL
Sbjct: 36 KKKATVDEFPLCVHLVSNELEQLSSEALEAARICANKYMTTVSGRDAFHLRVRVHPFHVL 95
Query: 61 RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKF 120
RINKMLSCAGADRLQ GMRGA+GKP G ARV IGQ++ SVR KDSN E LRRA++
Sbjct: 96 RINKMLSCAGADRLQQGMRGAWGKPHGLAARVDIGQIIFSVRTKDSNKDVVVEGLRRARY 155
Query: 121 KFPGRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPLA 170
KFPG+QKII+S+KWGFT R +YL+ + + DG K L G L
Sbjct: 156 KFPGQQKIILSKKWGFTNLDRPEYLKKREAGEVKDDGAFVKFLSKKGSLE 205
>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1
Length = 151
Score = 209 bits (534), Expect = 1e-70
Identities = 105/144 (72%), Positives = 118/144 (81%)
Query: 1 MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 60
KK VDEFP C H+VS E E +SSEALEAARI NKYM K GKD FH+RVR+HPFHV+
Sbjct: 7 RKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVI 66
Query: 61 RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKF 120
RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K N H EALRRAKF
Sbjct: 67 RINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKF 126
Query: 121 KFPGRQKIIVSRKWGFTKFSRSDY 144
KFPGRQKI +S+KWGFTKF+ ++
Sbjct: 127 KFPGRQKIHISKKWGFTKFNADEF 150
>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H*
1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H*
1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H*
2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ...
Length = 171
Score = 187 bits (476), Expect = 2e-61
Identities = 49/132 (37%), Positives = 75/132 (56%), Gaps = 1/132 (0%)
Query: 1 MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDA-FHLRVRVHPFHV 59
K+K D++P + L+ E + +LEA+R++ N+++ K G++ + + +R P V
Sbjct: 35 RKQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQV 94
Query: 60 LRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAK 119
LR NK + AGADR+ GMR AFGK GT ARV G+ L + C ++ H +EA RRA
Sbjct: 95 LRENKQATGAGADRVSDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAY 154
Query: 120 FKFPGRQKIIVS 131
K +I S
Sbjct: 155 NKITPSCRIDSS 166
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA,
protein-protein; 2.40A {Haloarcula marismortui} SCOP:
d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J*
1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J*
1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H*
1giy_P ...
Length = 157
Score = 164 bits (417), Expect = 9e-53
Identities = 35/132 (26%), Positives = 47/132 (35%), Gaps = 12/132 (9%)
Query: 2 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLR 61
+P V V + + ALEAAR A N+++ + R+R PFHV+R
Sbjct: 35 NNGAGPTYPAQVENVVEKPVQIRHNALEAARNAANRFVQNSGAAANYKFRIRKFPFHVIR 94
Query: 62 INKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFK 121
++ GMR FGK GT AR + A RRA K
Sbjct: 95 ----------EQDGDGMRAPFGKSVGTAARSHGANHDFIAWVNPDP--AVEFAWRRAYMK 142
Query: 122 FPGRQKIIVSRK 133
I S
Sbjct: 143 VTPTVNIDSSPA 154
>2zjr_J 50S ribosomal protein L16; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: d.41.4.2 PDB: 1sm1_K* 2zjp_J* 2zjq_J
1nkw_K 3cf5_J* 3dll_J* 3pio_J* 1njm_K* 1nwx_K* 1njp_K*
1xbp_K* 1y69_K 1nwy_K* 3pip_J* 1pnu_K 1pny_K 1vor_N
1vou_N 1vow_N 1voy_N ...
Length = 142
Score = 57.3 bits (138), Expect = 4e-11
Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 16/120 (13%)
Query: 15 LVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRL 74
L++ E + S +EA RI +++ + + +R+ P +
Sbjct: 35 LIAMEPAWIKSNQIEACRIVMSRHF-----RRGGKIYIRIFPDKPVTKKPA--------- 80
Query: 75 QTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKW 134
+T M G + + V G+V+ V A+EA R A K P + K++ +
Sbjct: 81 ETRMGKGKGAVEYWVSVVKPGRVMFEVAGVTEE--QAKEAFRLAGHKLPIQTKMVKREVY 138
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M
2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M
2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
Length = 136
Score = 51.5 bits (123), Expect = 5e-09
Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 16/108 (14%)
Query: 23 VSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAF 82
+++ +EAAR A + + K + +RV P + + M
Sbjct: 41 LTARQIEAARRAMTRAV-----KRQGKIWIRVFPDKPITEKPL---------AVRMGKGK 86
Query: 83 GKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIV 130
G + A + G+VL + A+EA + A K P + +
Sbjct: 87 GNVEYWVALIQPGKVLYEMDGVPEE--LAREAFKLAAAKLPIKTTFVT 132
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13,
mitochondrial; mitochondrial ribosome, large ribosomal
subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB:
3iy9_I
Length = 118
Score = 49.6 bits (118), Expect = 2e-08
Identities = 16/113 (14%), Positives = 32/113 (28%), Gaps = 13/113 (11%)
Query: 15 LVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRL 74
+++ + E R+ N+ M + PF + +
Sbjct: 19 ILALGGGYLHWGHFEMMRLTINRSMDPKNMFAIWR---VPAPFKPITRKSV--------- 66
Query: 75 QTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQK 127
M G G V G++++ + + Q L + K P K
Sbjct: 67 GHRMGGGKGAIDHYVTPVKAGRLVVEMGGRCEFEE-VQGFLDQVAHKLPFAAK 118
>3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Length = 135
Score = 48.8 bits (116), Expect = 4e-08
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 16/108 (14%)
Query: 23 VSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAF 82
++S +EA R A + + + VR+ P + + +T M
Sbjct: 42 ITSRQIEAGRRAMTRNA-----RRGGKIWVRIFPDKPVTVRPA---------ETRMGSGK 87
Query: 83 GKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIV 130
G P+ A V G++L + N A+ A+ A K P R + I+
Sbjct: 88 GSPEYWVAVVKPGRILYEISGVAEN--IARRAVAIAASKMPIRTQFII 133
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 6e-04
Identities = 36/201 (17%), Positives = 58/201 (28%), Gaps = 79/201 (39%)
Query: 17 SWEK-ENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVH--------PFHVLRINK--- 64
SWE +A+ F + VR + P +L +
Sbjct: 288 SWESFFVSVRKAITVL----------------FFIGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 65 ------MLSCAGADR--LQTGMRGAFGKPQGTCARVAIG-QVLLSVRCKDSN-------- 107
MLS + + +Q + T + + G QV +S+ N
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVN-------KTNSHLPAGKQVEISLVNGAKNLVVSGPPQ 384
Query: 108 SLHA-QEALRRAK-------FKFPGRQKIIVSRKWGFTKFSR----------SDYLRFKS 149
SL+ LR+AK + P + RK KFS S L +
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSE-----RK---LKFSNRFLPVASPFHSHLLV-PA 435
Query: 150 ENRIVPDGVNAKLLGCHGPLA 170
+ I D V + +
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQ 456
Score = 26.6 bits (58), Expect = 6.1
Identities = 34/162 (20%), Positives = 56/162 (34%), Gaps = 44/162 (27%)
Query: 24 SSEALEAARIACNKYMAKFAG----KDAFH-LRVRVHPFHVLRINKMLSCAGADRLQTGM 78
+S A + +A F G D F LR +HVL + ++ + A+ L +
Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL-VGDLIKFS-AETLSELI 199
Query: 79 RGAFGK----PQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKW 134
R QG + I + L ++ ++ ++ L P +I
Sbjct: 200 RTTLDAEKVFTQG----LNILEWL-----ENPSNTPDKDYLLSIPISCP----LI----- 241
Query: 135 GFTKFSRSDYLRFKSENRIVPDGVNAKLLGC-HGPLASRQPG 175
G + + Y+ V AKLLG G L S G
Sbjct: 242 GVIQLAH--YV------------VTAKLLGFTPGELRSYLKG 269
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability;
2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1
c.1.8.1
Length = 515
Score = 28.3 bits (63), Expect = 1.5
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 118 AKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSENRI 153
KF FPGR S KW + F D+ + +RI
Sbjct: 140 TKFDFPGRGNTYSSFKWRWYHFDGVDWDESRKLSRI 175
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase,
alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A
{Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A*
2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Length = 485
Score = 26.8 bits (59), Expect = 4.6
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 118 AKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSEN 151
+F FPGR S KW + F D+ + + N
Sbjct: 141 TRFDFPGRGNTHSSFKWRWYHFDGVDWDQSRRLN 174
>3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable,
halophilic, N domain, starch binding, hydrolase; HET:
G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB:
3bcd_A* 3bcf_A
Length = 599
Score = 26.8 bits (59), Expect = 4.7
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 118 AKFKFPGRQKIIVSRKWGFTKFSRSDY 144
F FPGR + W F +D+
Sbjct: 261 TGFNFPGRNGEYSNFTWNGQCFDGTDW 287
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta
fold, unknown function; 2.55A {Pyrococcus horikoshii}
Length = 226
Score = 26.5 bits (58), Expect = 4.7
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 92 VAIGQVLLSVRCKDSNSLHAQEALRRA 118
+AI Q +SV DS +H ++ + A
Sbjct: 198 LAIKQGDVSVEVFDSAEIHMRKLIELA 224
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous
domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP:
c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Length = 228
Score = 26.5 bits (58), Expect = 5.1
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 92 VAIGQVLLSVRCKDSNSLHAQEALRRA 118
V + Q L V D + A+ A++ A
Sbjct: 199 VVLKQDDLKVPLIDPMDVIAEVAVKVA 225
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid,
center for structural genomics O infectious diseases,
alpha beta; 1.75A {Yersinia pestis}
Length = 231
Score = 25.8 bits (56), Expect = 9.3
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 92 VAIGQVLLSVRCKDSNSLHAQEALRRA 118
+ + SV D+ ++HA A A
Sbjct: 203 LLVNAQDASVPVFDTTAIHASAAADYA 229
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.136 0.422
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,846,990
Number of extensions: 160047
Number of successful extensions: 407
Number of sequences better than 10.0: 1
Number of HSP's gapped: 399
Number of HSP's successfully gapped: 23
Length of query: 183
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 95
Effective length of database: 4,244,745
Effective search space: 403250775
Effective search space used: 403250775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.0 bits)