RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 030082
(183 letters)
>d2pa2a1 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human (Homo
sapiens) [TaxId: 9606]}
Length = 137
Score = 206 bits (526), Expect = 6e-70
Identities = 104/137 (75%), Positives = 114/137 (83%)
Query: 3 KKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRI 62
K VDEFP C H+VS E E +SSEALEAARI NKYM K GKD FH+RVR+HPFHV+RI
Sbjct: 1 KAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRI 60
Query: 63 NKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKF 122
NKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K N H EALRRAKFKF
Sbjct: 61 NKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKF 120
Query: 123 PGRQKIIVSRKWGFTKF 139
PGRQKI +S+KWGFTKF
Sbjct: 121 PGRQKIHISKKWGFTKF 137
>d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 163
Score = 168 bits (426), Expect = 2e-54
Identities = 48/129 (37%), Positives = 74/129 (57%), Gaps = 1/129 (0%)
Query: 1 MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDA-FHLRVRVHPFHV 59
K+K D++P + L+ E + +LEA+R++ N+++ K G++ + + +R P V
Sbjct: 35 RKQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQV 94
Query: 60 LRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAK 119
LR NK + AGADR+ GMR AFGK GT ARV G+ L + C ++ H +EA RRA
Sbjct: 95 LRENKQATGAGADRVSDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAY 154
Query: 120 FKFPGRQKI 128
K +I
Sbjct: 155 NKITPSCRI 163
>d1jj2h_ d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Haloarcula
marismortui [TaxId: 2238]}
Length = 167
Score = 167 bits (424), Expect = 4e-54
Identities = 45/130 (34%), Positives = 58/130 (44%), Gaps = 2/130 (1%)
Query: 2 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLR 61
+P V LV + + ALEAAR+A N+Y+ + R+R PFHV+R
Sbjct: 35 NNGAGPTYPAQVELVVEKPVQIRHNALEAARVAANRYVQNSGAAANYKFRIRKFPFHVIR 94
Query: 62 INKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFK 121
NK + A A GMR FGKP GT ARV + + +EA RRAK K
Sbjct: 95 ENKAAAAAAAAAAADGMRAPFGKPVGTAARVHGANHIFIAWVNPDP--NVEEAWRRAKMK 152
Query: 122 FPGRQKIIVS 131
I S
Sbjct: 153 VTPTINIDSS 162
>d2gyck1 d.41.4.2 (K:3-133) Ribosomal protein L16p {Escherichia coli
[TaxId: 562]}
Length = 131
Score = 51.3 bits (123), Expect = 2e-09
Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 16/112 (14%)
Query: 19 EKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGM 78
+ +++ +EAAR A + + K + +RV P + + M
Sbjct: 35 GRGRLTARQIEAARRAMTRAV-----KRQGKIWIRVFPDKPITEKPL---------AVRM 80
Query: 79 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIV 130
G + A + G+VL + A+EA + A K P + +
Sbjct: 81 GKGKGNVEYWVALIQPGKVLYEMDGVPEEL--AREAFKLAAAKLPIKTTFVT 130
>d2j01q1 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus
thermophilus [TaxId: 274]}
Length = 136
Score = 46.0 bits (109), Expect = 2e-07
Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 16/112 (14%)
Query: 19 EKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGM 78
E ++++ +EAAR+A ++ + + +R+ P + G +
Sbjct: 33 EPAWITAQQIEAARVAMVRHF-----RRGGKIFIRIFPDKPYTKKPLEVRMGKGK----- 82
Query: 79 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIV 130
G +G A V G+V+ V A EALR A K P + KI+
Sbjct: 83 ----GNVEGYVAVVKPGRVMFEVAGVTEEQ--AMEALRIAGHKLPIKTKIVR 128
>d1wjwa_ d.129.2.1 (A:) Phosphoacetylglucosamine mutase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 112
Score = 26.1 bits (57), Expect = 1.5
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 96 QVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTK 138
L V+ D + +A R+A PG Q+ I +T
Sbjct: 15 NRQLKVKVADRRVISTTDAERQAV-TPPGLQEAINDLVKKYTL 56
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 24.9 bits (53), Expect = 7.6
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 5 GVDEFPFCVHLVSWEK--ENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRI 62
VD H+ + + + ++ E + A I + + G+D + P +LR+
Sbjct: 357 FVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRL 416
>d1v33a_ d.264.1.1 (A:) DNA primase {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 346
Score = 24.7 bits (53), Expect = 9.2
Identities = 4/18 (22%), Positives = 6/18 (33%)
Query: 132 RKWGFTKFSRSDYLRFKS 149
R++GF R
Sbjct: 35 REFGFDHSGEGPSDRKNQ 52
>d1p16a2 d.142.2.3 (A:1-245) mRNA capping enzyme alpha subunit
{Yeast (Candida albicans) [TaxId: 5476]}
Length = 245
Score = 24.4 bits (52), Expect = 9.3
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 112 QEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYL 145
E L R FPG Q + R+ + DY
Sbjct: 30 AELLGRRNTGFPGSQPVSFERRHLEETLMQKDYF 63
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.136 0.422
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 687,968
Number of extensions: 29427
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 11
Length of query: 183
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 103
Effective length of database: 1,309,196
Effective search space: 134847188
Effective search space used: 134847188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.7 bits)