AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.
Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on
Query Sequence

>030083
MLTTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGNSLDCVCLIVTASVPFRVPINRTLA
ISLPRACNMPSVPVQCKASGAPLPAPGPASLGSAPSPGESPAASPKAPVVPQPTPSGEAP
ESDTTPGLTPPSPPSPDVGSGSGTPTGTPASRPDLTPSAAMPSYIFSPSLLLFVLGFVVL
KYY
High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT3G22620 AT3G22620 AT3G22620	protein from Arabidopsis thaliana	1.1e-22
BLAST match view associations BLAST with AT1G05450 AT1G05450 AT1G05450	protein from Arabidopsis thaliana	6.7e-17
BLAST match view associations BLAST with EDA4 EDA4 EDA4 AT2G48140	protein from Arabidopsis thaliana	1.6e-15
BLAST match view associations BLAST with AT2G48130 AT2G48130 AT2G48130	protein from Arabidopsis thaliana	1.6e-06
BLAST match view associations BLAST with AT3G22600 AT3G22600 AT3G22600	protein from Arabidopsis thaliana	3.4e-05
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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030083
        (183 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2828523 - symbol:AT3G22620 species:3702 "Arabi...   228  1.1e-22   2
TAIR|locus:2201046 - symbol:AT1G05450 "AT1G05450" species...   208  6.7e-17   1
TAIR|locus:2039341 - symbol:EDA4 "AT2G48140" species:3702...   195  1.6e-15   1
TAIR|locus:2039366 - symbol:AT2G48130 species:3702 "Arabi...   110  1.6e-06   1
TAIR|locus:2077001 - symbol:AT3G22600 species:3702 "Arabi...    98  3.4e-05   1


>TAIR|locus:2828523 [details] [associations]
            symbol:AT3G22620 species:3702 "Arabidopsis thaliana"
            [GO:0005886 "plasma membrane" evidence=ISM] [GO:0006869 "lipid
            transport" evidence=ISS] [GO:0008289 "lipid binding" evidence=ISS]
            [GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0010167
            "response to nitrate" evidence=RCA] [GO:0015706 "nitrate transport"
            evidence=RCA] EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006869
            InterPro:IPR016140 SMART:SM00499 SUPFAM:SSF47699 GO:GO:0009941
            Pfam:PF14368 EMBL:AP000731 UniGene:At.398 UniGene:At.48695
            HOGENOM:HOG000240488 EMBL:AY035005 EMBL:AY113897 IPI:IPI00521514
            RefSeq:NP_566713.1 ProteinModelPortal:Q9LJ85 SMR:Q9LJ85
            PRIDE:Q9LJ85 EnsemblPlants:AT3G22620.1 GeneID:821833
            KEGG:ath:AT3G22620 TAIR:At3g22620 eggNOG:NOG246629
            InParanoid:Q9LJ85 OMA:GMGCLCL PhylomeDB:Q9LJ85
            ProtClustDB:CLSN2917229 ArrayExpress:Q9LJ85 Genevestigator:Q9LJ85
            Uniprot:Q9LJ85
        Length = 203

 Score = 228 (85.3 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
 Identities = 40/76 (52%), Positives = 51/76 (67%)

Query:     1 MLTTFTPCMNFLTNXXXXXXXXXXXXXXXLKNLTGNSLDCVCLIVTASVPFRVPINRTLA 60
             M+TT +PCM F+TN               L++LT   + C+CLIVT +VPF +PINRT A
Sbjct:    33 MMTTVSPCMGFITNSSSNGTSPSSDCCNSLRSLTTGGMGCLCLIVTGTVPFNIPINRTTA 92

Query:    61 ISLPRACNMPSVPVQC 76
             +SLPRACNMP VP+QC
Sbjct:    93 VSLPRACNMPRVPLQC 108

 Score = 49 (22.3 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
 Identities = 13/33 (39%), Positives = 15/33 (45%)

Query:   151 SRPDLTPSAAMPSYIFSPSXXXXXXXXXXXKYY 183
             SRP  TPS+A   Y  SPS           K+Y
Sbjct:   174 SRPSETPSSA---YALSPSLLFFSIALVALKFY 203


>TAIR|locus:2201046 [details] [associations]
            symbol:AT1G05450 "AT1G05450" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0005886 "plasma membrane"
            evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
            [GO:0031225 "anchored to membrane" evidence=TAS] EMBL:CP002684
            GO:GO:0006869 InterPro:IPR016140 SMART:SM00499 SUPFAM:SSF47699
            GO:GO:0031225 GO:GO:0006508 GO:GO:0008233 Pfam:PF14368
            UniGene:At.15329 UniGene:At.42398 EMBL:DQ492243 IPI:IPI00530661
            RefSeq:NP_973763.1 ProteinModelPortal:Q1G2Y5 SMR:Q1G2Y5
            STRING:Q1G2Y5 PRIDE:Q1G2Y5 EnsemblPlants:AT1G05450.2 GeneID:837046
            KEGG:ath:AT1G05450 TAIR:At1g05450 InParanoid:Q1G2Y5 OMA:VQCKASA
            ProtClustDB:CLSN2915176 Genevestigator:Q1G2Y5 Uniprot:Q1G2Y5
        Length = 205

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 42/76 (55%), Positives = 50/76 (65%)

Query:     1 MLTTFTPCMNFLTNXXXXXXXXXXXXXXXLKNLTGNSLDCVCLIVTASVPFRVPINRTLA 60
             ML++ T C +FLT                LK+LTG  +DC+CLIVTA VP  +PINRTLA
Sbjct:    37 MLSSVTGCTSFLTGGGSFPTSDCCGA---LKSLTGTGMDCLCLIVTAGVPISIPINRTLA 93

Query:    61 ISLPRACNMPSVPVQC 76
             ISLPRAC +P VPVQC
Sbjct:    94 ISLPRACGIPGVPVQC 109


>TAIR|locus:2039341 [details] [associations]
            symbol:EDA4 "AT2G48140" species:3702 "Arabidopsis
            thaliana" [GO:0006869 "lipid transport" evidence=ISS] [GO:0008289
            "lipid binding" evidence=ISS] [GO:0031225 "anchored to membrane"
            evidence=TAS] [GO:0009561 "megagametogenesis" evidence=IMP]
            [GO:0000041 "transition metal ion transport" evidence=RCA]
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006869
            InterPro:IPR016140 SMART:SM00499 SUPFAM:SSF47699 GO:GO:0031225
            GO:GO:0009561 Pfam:PF14368 EMBL:AY045643 EMBL:AY059652
            EMBL:AY088054 EMBL:AB246325 IPI:IPI00530766 RefSeq:NP_566127.1
            UniGene:At.20078 ProteinModelPortal:Q94AX3 SMR:Q94AX3 STRING:Q94AX3
            PaxDb:Q94AX3 PRIDE:Q94AX3 EnsemblPlants:AT2G48140.1 GeneID:819426
            KEGG:ath:AT2G48140 TAIR:At2g48140 eggNOG:NOG289768
            HOGENOM:HOG000240488 InParanoid:Q94AX3 OMA:LPRACKM PhylomeDB:Q94AX3
            ProtClustDB:CLSN2917361 Genevestigator:Q94AX3 Uniprot:Q94AX3
        Length = 200

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 37/77 (48%), Positives = 47/77 (61%)

Query:     1 MLTTFTPCMNFLTNXXXXXXXXXXXXXXXLKNLTGNSLDCVCLIVTASVPFRVP-INRTL 59
             M++TFTPC+NF+T                LK LT   + C CLI+TA+VP     INRTL
Sbjct:    31 MISTFTPCLNFITGSSGGSVTPTAGCCDSLKTLTNTGMGCACLILTANVPLPTGFINRTL 90

Query:    60 AISLPRACNMPSVPVQC 76
             A++LPRAC M  VP+QC
Sbjct:    91 ALALPRACKMGGVPIQC 107


>TAIR|locus:2039366 [details] [associations]
            symbol:AT2G48130 species:3702 "Arabidopsis thaliana"
            [GO:0005886 "plasma membrane" evidence=ISM] [GO:0006869 "lipid
            transport" evidence=IEA;ISS] [GO:0008289 "lipid binding"
            evidence=IEA;ISS] [GO:0031225 "anchored to membrane" evidence=TAS]
            [GO:0000041 "transition metal ion transport" evidence=RCA]
            [GO:0006826 "iron ion transport" evidence=RCA] [GO:0010106
            "cellular response to iron ion starvation" evidence=RCA]
            [GO:0010167 "response to nitrate" evidence=RCA] [GO:0015706
            "nitrate transport" evidence=RCA] InterPro:IPR000528 PRINTS:PR00382
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006869
            InterPro:IPR016140 SMART:SM00499 SUPFAM:SSF47699 GO:GO:0031225
            GO:GO:0006508 GO:GO:0008289 GO:GO:0008233 Pfam:PF14368
            EMBL:AY065446 EMBL:AY117278 EMBL:AB246326 IPI:IPI00527385
            PIR:G84923 RefSeq:NP_566126.1 UniGene:At.28652
            ProteinModelPortal:Q7EB72 SMR:Q7EB72 EnsemblPlants:AT2G48130.1
            GeneID:819425 KEGG:ath:AT2G48130 TAIR:At2g48130 eggNOG:NOG330302
            HOGENOM:HOG000240487 InParanoid:Q7EB72 OMA:NIGLNIN PhylomeDB:Q7EB72
            ProtClustDB:CLSN2917360 ArrayExpress:Q7EB72 Genevestigator:Q7EB72
            Uniprot:Q7EB72
        Length = 183

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 25/77 (32%), Positives = 41/77 (53%)

Query:     2 LTTFTPCMNFLTNXXXXXXXXXXXXXXXLKNLTGNSLDCVCLIVTASVP-FRVPINRTLA 60
             LTT +PC++++T                L ++  +S  C+C  V + +P   + INRT A
Sbjct:    34 LTTLSPCLSYITGNSTTPSQPCCSR---LDSVIKSSPQCICSAVNSPIPNIGLNINRTQA 90

Query:    61 ISLPRACNMPSVPV-QC 76
             + LP ACN+ + P+ QC
Sbjct:    91 LQLPNACNIQTPPLTQC 107


>TAIR|locus:2077001 [details] [associations]
            symbol:AT3G22600 species:3702 "Arabidopsis thaliana"
            [GO:0005886 "plasma membrane" evidence=ISM] [GO:0006869 "lipid
            transport" evidence=IEA;ISS] [GO:0008289 "lipid binding"
            evidence=IEA;ISS] [GO:0031225 "anchored to membrane" evidence=TAS]
            [GO:0010167 "response to nitrate" evidence=RCA] [GO:0015706
            "nitrate transport" evidence=RCA] InterPro:IPR000528 PRINTS:PR00382
            EMBL:CP002686 GO:GO:0006869 InterPro:IPR016140 SMART:SM00499
            SUPFAM:SSF47699 GO:GO:0031225 GO:GO:0008289 Pfam:PF14368
            EMBL:AP000731 HOGENOM:HOG000240487 EMBL:AY045650 EMBL:AY079122
            EMBL:AB246327 IPI:IPI00533791 RefSeq:NP_566712.1 UniGene:At.20064
            HSSP:P07597 ProteinModelPortal:Q9LJ86 SMR:Q9LJ86 PRIDE:Q9LJ86
            EnsemblPlants:AT3G22600.1 GeneID:821832 KEGG:ath:AT3G22600
            TAIR:At3g22600 InParanoid:Q9LJ86 OMA:ISRCNAS PhylomeDB:Q9LJ86
            ProtClustDB:CLSN2688672 Genevestigator:Q9LJ86 Uniprot:Q9LJ86
        Length = 170

 Score = 98 (39.6 bits), Expect = 3.4e-05, P = 3.4e-05
 Identities = 22/77 (28%), Positives = 39/77 (50%)

Query:     2 LTTFTPCMNFLTNXXXXXXXXXXXXXXXLKNLTGNSLDCVCLIVTAS-VPFRVPINRTLA 60
             L + +PC+N++T                L  +  +S DC+C ++        + +N+T A
Sbjct:    32 LISMSPCLNYITGNSTSPNQQCCNQ---LSRVVQSSPDCLCQVLNGGGSQLGINVNQTQA 88

Query:    61 ISLPRACNMPSVPV-QC 76
             + LPRACN+ + PV +C
Sbjct:    89 LGLPRACNVQTPPVSRC 105


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.133   0.416    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      183        92   0.00091  102 3  11 22  0.47    29
                                                     29  0.40    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  512 (54 KB)
  Total size of DFA:  100 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.63u 0.18s 7.81t   Elapsed:  00:00:00
  Total cpu time:  7.63u 0.18s 7.81t   Elapsed:  00:00:00
  Start:  Fri May 10 07:19:07 2013   End:  Fri May 10 07:19:07 2013
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the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data
