BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030083
(183 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VYI9|NLTL5_ARATH Non-specific lipid-transfer protein-like protein At5g64080
OS=Arabidopsis thaliana GN=At5g64080 PE=1 SV=1
Length = 182
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 1 MLTTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGNSLDCVCLIVTASVPFRVPINRTLA 60
++ C++F+ +S G+ P CC LK + C+C +S V +N T A
Sbjct: 46 LILNMADCLSFV-SSGGTVAKPEGTCCSGLKTVLKADSQCLCEAFKSSASLGVTLNITKA 104
Query: 61 ISLPRACNM--PSVPVQCKASGAPLPAPGPA 89
+LP AC + PS+ C S AP APG A
Sbjct: 105 STLPAACKLHAPSI-ATCGLSVAPSTAPGLA 134
>sp|Q08DF4|DYN1_BOVIN Dynamin-1 OS=Bos taurus GN=DNM1 PE=2 SV=1
Length = 856
Score = 37.4 bits (85), Expect = 0.057, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 91 LGSAPSPGESPAASPKAPVVPQPTPSGEAPESDTTPGLTPPSPPSPDVGSGSGTPT 146
LG AP P ASP P G P+ + P PP PS +GSG P+
Sbjct: 809 LGGAPPVPSRPGASPD--------PFGPPPQVPSRPNRAPPGVPSQPIGSGKSIPS 856
>sp|P50570|DYN2_HUMAN Dynamin-2 OS=Homo sapiens GN=DNM2 PE=1 SV=2
Length = 870
Score = 36.6 bits (83), Expect = 0.10, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 51/132 (38%), Gaps = 11/132 (8%)
Query: 46 TASVPFRVPINRTLAISLPRACNMPSVPVQCKASGAPLPAPGPASLGSAPSPGESP---- 101
T S P P++ T L A + P + S P PA G P P P
Sbjct: 743 TVSTPVPPPVDDTW---LQSASSHSPTPQRRPVSSIHPPGRPPAVRGPTPGPPLIPVPVG 799
Query: 102 -AASPKAPVVP-QPTPSGEAPESDTTPGLTPPSPPSPDVGSGSGTPTGTPASRPDLTPSA 159
AAS AP +P +P P SD P PP PS V G P G P+ RP PS
Sbjct: 800 AAASFSAPPIPSRPGPQSVFANSDLFPA--PPQIPSRPVRIPPGIPPGVPSRRPPAAPSR 857
Query: 160 AMPSYIFSPSLL 171
PSLL
Sbjct: 858 PTIIRPAEPSLL 869
>sp|C0ZYA5|IF2_RHOE4 Translation initiation factor IF-2 OS=Rhodococcus erythropolis
(strain PR4 / NBRC 100887) GN=infB PE=3 SV=1
Length = 981
Score = 36.2 bits (82), Expect = 0.14, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 92 GSAPSPGESPAASPKAPVVPQPTPSGEAPESDTTPGLTPPSPPSPDVGSGSGTPTGTPAS 151
GS P+PG+ P+P P P PG P PP+ G G P +P S
Sbjct: 209 GSRPAPGQGGPRPAPGQGGPRPAPGQGGPRP--APGQGGPRPPA-----GQGGPRPSPGS 261
Query: 152 RPDLTPSAAMPS 163
P AMP+
Sbjct: 262 MPPRPNPGAMPA 273
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 73 PVQCKASGAPLPAPGPASLGSAPSPGESPAASPKAPVVPQPTPSGEAPESDTTPGLTP 130
P G P PAPG G P+PG+ P P+P+P P + PG P
Sbjct: 219 PRPAPGQGGPRPAPGQG--GPRPAPGQGGPRPPAGQGGPRPSPGSMPPRPN--PGAMP 272
>sp|Q6ASY2|NLTL1_ORYSJ Non-specific lipid transfer protein-like 1 OS=Oryza sativa subsp.
japonica GN=LTPL1 PE=1 SV=1
Length = 178
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 8 CMNFLTNSSGSGTSPSSDCCGSLKNLTGNS--LDCVCLIVTASVPFRVPINRTLAISLPR 65
C++++T + + PS CCG +K +S + C+C T S +PIN T A+ LP
Sbjct: 50 CLDYVTPGKTAPSRPSKLCCGEVKGALKDSAAVGCLCAAFT-SKTLPLPINITRALHLPA 108
Query: 66 ACN 68
AC
Sbjct: 109 ACG 111
>sp|Q01W31|IF2_SOLUE Translation initiation factor IF-2 OS=Solibacter usitatus (strain
Ellin6076) GN=infB PE=3 SV=1
Length = 1001
Score = 34.3 bits (77), Expect = 0.44, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 37/103 (35%), Gaps = 6/103 (5%)
Query: 64 PRACNMPSVPVQCKASGAPLPAPGPASLGSAPSPGESPAASPKAPVVPQPTPSGEA---P 120
P A P P A P P P + S P + +P AP PQ P P
Sbjct: 196 PAAVFAPGRPAPPSAKPLPTTTPRPGQVLSGPRQPFPSSPAPGAPQRPQAIPRPPQQVRP 255
Query: 121 ESDTTPGLTPPSPPS-PDVGSGSGTPTGTPASRPDLTPSAAMP 162
ES G PS P P G + P P RPDL + P
Sbjct: 256 ESQRPSGPGAPSAPQRPLAGQPAARPVVPP--RPDLVAKLSAP 296
Score = 30.4 bits (67), Expect = 7.1, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 40/106 (37%), Gaps = 21/106 (19%)
Query: 84 PAPGPASLGSAPSPGESPAASPKAPVVP----------QPTPSGEAPESDTTPGLTPPSP 133
P+ P + AP P+A P P QP PS AP + P P P
Sbjct: 191 PSQTPPAAVFAPGRPAPPSAKPLPTTTPRPGQVLSGPRQPFPSSPAPGAPQRPQAIPRPP 250
Query: 134 ----PSPDVGSGSGTPT-------GTPASRPDLTPSAAMPSYIFSP 168
P SG G P+ G PA+RP + P + + + +P
Sbjct: 251 QQVRPESQRPSGPGAPSAPQRPLAGQPAARPVVPPRPDLVAKLSAP 296
>sp|C1B313|IF2_RHOOB Translation initiation factor IF-2 OS=Rhodococcus opacus (strain
B4) GN=infB PE=3 SV=1
Length = 974
Score = 33.9 bits (76), Expect = 0.64, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 80 GAPLPAPGPASLGSAPSPGESPAASPKAPVVPQPTPSGEAPESDTTPGLTPPSP 133
G P PAPG G P+PG+ P+P P P +PG PP P
Sbjct: 214 GGPRPAPGQG--GPRPAPGQGGPRPAPGQGGPRPAPGQGGPRP--SPGSMPPRP 263
>sp|Q0S219|IF2_RHOSR Translation initiation factor IF-2 OS=Rhodococcus sp. (strain RHA1)
GN=infB PE=3 SV=1
Length = 980
Score = 33.9 bits (76), Expect = 0.69, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 80 GAPLPAPGPASLGSAPSPGESPAASPKAPVVPQPTPSGEAPESDTTPGLTPPSP 133
G P PAPG G P+PG+ P+P P P +PG PP P
Sbjct: 220 GGPRPAPGQG--GPRPAPGQGGPRPAPGQGGPRPAPGQGGPRP--SPGSMPPRP 269
>sp|B2HKS2|IF2_MYCMM Translation initiation factor IF-2 OS=Mycobacterium marinum (strain
ATCC BAA-535 / M) GN=infB PE=3 SV=1
Length = 947
Score = 32.3 bits (72), Expect = 1.6, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 12/88 (13%)
Query: 64 PRACNMPSVPVQCKASGAPLPAPGPAS--LGSAP----SPGESPAASPKAPVVPQPTPSG 117
P A P + A P+P PG + +G+ P P + P P+AP P P
Sbjct: 165 PAAPQAPHPGMAPGARPGPVPKPGVRTPRVGNNPFSSAQPVDRPIPRPQAPRPGAPRPGA 224
Query: 118 EAPESDTTPGLTPPSPPSPDVGSGSGTP 145
P +PG PP P G SG P
Sbjct: 225 PRP-GGASPGNMPPRP-----GGASGGP 246
>sp|Q9ZQI8|NLTL2_ARATH Non-specific lipid-transfer protein-like protein At2g13820
OS=Arabidopsis thaliana GN=At2g13820 PE=1 SV=1
Length = 169
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 12/112 (10%)
Query: 1 MLTTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGNSLDCVCLIVTASVPFRVPINRTLA 60
++ C++F+T+ S + P CC LK + +C+C F+ + L
Sbjct: 30 LILNMADCLSFVTSGS-TVVKPEGTCCSGLKTVVRTGPECLC------EAFKNSGSLGLT 82
Query: 61 ISLPRACNMPSVPVQCKASGAPLPAPGPASLGS--APSPGESPAASPKAPVV 110
+ L +A ++PSV CK + P G + G A +PG SP A AP +
Sbjct: 83 LDLSKAASLPSV---CKVAAPPSARCGLSVSGDPPATAPGLSPTAGAGAPAL 131
>sp|Q47RV1|IF2_THEFY Translation initiation factor IF-2 OS=Thermobifida fusca (strain
YX) GN=infB PE=3 SV=1
Length = 955
Score = 31.6 bits (70), Expect = 2.9, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Query: 77 KASGAPLPAPGPASLGSAPSPGESPAASPKAPVVPQPTPSGEAPESDTTPGLTPPSPPSP 136
KA P A GPA P G++P PK P P P G P S T G+ P P
Sbjct: 128 KAGQQPSGAQGPAR----PESGKTPRPVPK----PGPRP-GNNPFSSTASGMGTRPTPRP 178
Query: 137 DVGSGSGTPTGTPASRPDLTP 157
G+G P P P + P
Sbjct: 179 PASGGTGAPRPGPRPHPGMMP 199
>sp|A7H9F3|IF2_ANADF Translation initiation factor IF-2 OS=Anaeromyxobacter sp. (strain
Fw109-5) GN=infB PE=3 SV=1
Length = 970
Score = 31.2 bits (69), Expect = 3.9, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 43/121 (35%), Gaps = 26/121 (21%)
Query: 57 RTLAISLPRACNMPSVPVQCKASGAPLPAPG--PASLGSAPS--------------PGE- 99
R A S+P P PV+ A G APG PA+ G P+ PG+
Sbjct: 177 RPPAPSVPAGAQPPGAPVRPAAPGVRPAAPGVRPAAPGVRPTGPGVRPSVPGGPRAPGQP 236
Query: 100 ---------SPAASPKAPVVPQPTPSGEAPESDTTPGLTPPSPPSPDVGSGSGTPTGTPA 150
P A P P P P P P + ++ P P V +G T PA
Sbjct: 237 TAPMAAAPHGPGAQPGQPAAPGPDPRTLRPTATQAVVISRPLVPVRRVTPPTGARTQFPA 296
Query: 151 S 151
+
Sbjct: 297 A 297
Score = 31.2 bits (69), Expect = 4.1, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 40/106 (37%), Gaps = 16/106 (15%)
Query: 70 PSVPVQCKASGAPLPAPGPASLGSAPSPGESPAASPKAPVVPQPTPSGEAPESDTTPGLT 129
PSVP + GAP+ +PG PAA P P P+G G
Sbjct: 181 PSVPAGAQPPGAPV---------RPAAPGVRPAAPGVRPAAPGVRPTGPGVRPSVPGGPR 231
Query: 130 PPSPPSPDVGS---GSGTPTGTPASR-PD---LTPSAAMPSYIFSP 168
P P+ + + G G G PA+ PD L P+A I P
Sbjct: 232 APGQPTAPMAAAPHGPGAQPGQPAAPGPDPRTLRPTATQAVVISRP 277
>sp|Q8FPA7|IF2_COREF Translation initiation factor IF-2 OS=Corynebacterium efficiens
(strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC
100395) GN=infB PE=3 SV=1
Length = 964
Score = 31.2 bits (69), Expect = 4.2, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 73 PVQCKASGAPLPAPGPASLG-SAPSPGESPAASPKAPVVPQPTPSGEAPESDTTPGLTPP 131
P K + A AP PA+ S P+PG++ + + P+ P GEAP + P P
Sbjct: 117 PTAAKPAPAKPTAPKPATPAFSGPTPGDAAKKAAEDKATPK--PGGEAPRPNAMP--RPM 172
Query: 132 SPPSPDVGSGSGTPTGTPAS 151
+ P P G+ + P S
Sbjct: 173 AKPGPKPGARAPRVANNPFS 192
>sp|A0PQC4|IF2_MYCUA Translation initiation factor IF-2 OS=Mycobacterium ulcerans
(strain Agy99) GN=infB PE=3 SV=1
Length = 945
Score = 30.0 bits (66), Expect = 8.6, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 70 PSVPVQCKASGAPLPAPGPASLGSAPSPGESPAASPKAPVVPQPTPSGEAPESDTTPGLT 129
P P A GA P P P P G +P +S A V +P P +AP PG
Sbjct: 166 PQAPHPGMAPGAR-PGPVPKQGVRTPRVGNNPFSS--AQPVDRPIPRPQAPR----PGAP 218
Query: 130 PPSPPSPDVGSGSGTP 145
P P P S P
Sbjct: 219 RPGAPRPGGASSGNMP 234
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.131 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,865,402
Number of Sequences: 539616
Number of extensions: 4546672
Number of successful extensions: 64783
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 3082
Number of HSP's that attempted gapping in prelim test: 28355
Number of HSP's gapped (non-prelim): 22077
length of query: 183
length of database: 191,569,459
effective HSP length: 110
effective length of query: 73
effective length of database: 132,211,699
effective search space: 9651454027
effective search space used: 9651454027
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)