Query 030083
Match_columns 183
No_of_seqs 154 out of 791
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 13:08:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030083.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030083hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ljo_A Non-specific lipid-tran 99.5 2.8E-16 9.5E-21 116.6 -2.9 74 2-79 8-91 (93)
2 1afh_A Maize nonspecific lipid 99.5 5E-16 1.7E-20 114.6 -2.0 73 2-79 8-92 (93)
3 1t12_A LTP 1, nonspecific lipi 99.5 1.1E-15 3.7E-20 112.6 -1.8 70 2-79 8-90 (91)
4 2alg_A Non-specific lipid tran 99.5 9.9E-16 3.4E-20 112.8 -2.1 71 3-79 9-91 (92)
5 1siy_A LTP 1, NS-LTP1, nonspec 99.5 2.8E-15 9.4E-20 110.2 0.1 71 2-79 7-90 (91)
6 1bwo_A NS-LTP1, nonspecific li 99.5 1.2E-15 4.2E-20 112.0 -1.8 70 2-78 7-89 (90)
7 2rkn_A DIR1 protein, AT5G48485 99.4 4E-15 1.4E-19 105.9 -2.4 69 2-76 9-77 (77)
8 1n89_A Lipid transfer protein; 99.3 2.5E-13 8.5E-18 94.9 0.4 61 3-72 5-65 (67)
9 1l6h_A LTP2, non-specific lipi 99.3 3.4E-13 1.2E-17 94.6 -0.2 64 2-76 5-68 (69)
10 1hyp_A Hydrophobic protein fro 93.1 0.012 4.1E-07 42.6 -0.8 67 4-78 10-79 (80)
11 3ob4_A Conglutin, maltose ABC 89.4 0.01 3.5E-07 52.9 -5.4 53 24-78 429-490 (500)
12 1pnb_B Napin BNIB; napin IA an 69.5 0.43 1.5E-05 33.4 -1.8 53 21-77 9-71 (75)
13 1s6d_A Albumin 8; all helix, f 67.4 2 6.9E-05 31.6 1.4 68 5-77 21-102 (103)
14 2ds2_B Sweet protein mabinlin- 51.8 1 3.4E-05 31.4 -2.5 50 24-77 8-68 (72)
15 1w2q_A Conglutin, ARA H 6; all 51.4 1.8 6E-05 33.3 -1.4 73 4-78 24-119 (127)
16 1b1u_A Protein (alpha-amylase/ 45.1 3.3 0.00011 31.6 -0.7 67 3-72 15-108 (122)
17 1psy_A 2S albumin, RICC3; albu 44.5 3.1 0.00011 31.7 -1.0 63 4-69 26-116 (125)
18 1bea_A Bifunctional amylase/se 43.7 5.1 0.00017 30.8 0.1 74 3-79 15-118 (127)
19 1sm7_A Recombinant IB pronapin 34.7 1.7 5.7E-05 32.0 -3.8 70 4-77 14-105 (109)
20 2lx0_A Membrane fusion protein 27.3 32 0.0011 20.3 1.7 11 172-182 18-28 (32)
No 1
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=99.52 E-value=2.8e-16 Score=116.60 Aligned_cols=74 Identities=24% Similarity=0.578 Sum_probs=58.6
Q ss_pred CCcccCcHHHhhcCCCCCCCCCHHHHHHHHHhhCC-----CCCceeeeecCCCCcccCCCHHHHhhccccCCCCCCC---
Q 030083 2 LTTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGN-----SLDCVCLIVTASVPFRVPINRTLAISLPRACNMPSVP--- 73 (183)
Q Consensus 2 l~~LaPCl~Yltg~s~~~~sPs~~CC~gLksl~~~-----~~~CLC~~~~~~~~~~i~IN~trAlsLP~~Cgv~~pp--- 73 (183)
+..|+||++||+|+ ..|+..||+++|+|++. |+.|+|..+++......+||.+||++||++|||++++
T Consensus 8 ~~~L~pCl~Yv~g~----~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~a~~LP~~CgV~~p~~Is 83 (93)
T 2ljo_A 8 TSDLSPCLTYLTGG----PGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKIS 83 (93)
T ss_dssp HHHHHHHHHHHTTS----SCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHHHHHHHHHHTCCCSSCCS
T ss_pred HHHHHhHHHHHcCC----CCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHHHHhhhHhcCCCCCCCCC
Confidence 45799999999985 36999999999999864 4567776666533333479999999999999999985
Q ss_pred --CCcCCC
Q 030083 74 --VQCKAS 79 (183)
Q Consensus 74 --~~C~~~ 79 (183)
+||++.
T Consensus 84 ~~~dC~~v 91 (93)
T 2ljo_A 84 TTTNCNTV 91 (93)
T ss_dssp TTCCGGGC
T ss_pred CCCCCCCC
Confidence 489864
No 2
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=99.51 E-value=5e-16 Score=114.56 Aligned_cols=73 Identities=25% Similarity=0.620 Sum_probs=58.8
Q ss_pred CCcccCcHHHhhcCCCCCCCCCHHHHHHHHHhhCC-------CCCceeeeecCCCCcccCCCHHHHhhccccCCCCCCC-
Q 030083 2 LTTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGN-------SLDCVCLIVTASVPFRVPINRTLAISLPRACNMPSVP- 73 (183)
Q Consensus 2 l~~LaPCl~Yltg~s~~~~sPs~~CC~gLksl~~~-------~~~CLC~~~~~~~~~~i~IN~trAlsLP~~Cgv~~pp- 73 (183)
+..|+||++|++++ +..|+++||++||++++. +..|+|++.... .++ +||.++|++||++|||++++
T Consensus 8 ~~~L~pCl~y~~~~---~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~-~~~-~in~~~A~~LP~~C~v~~p~~ 82 (93)
T 1afh_A 8 ASAIAPCISYARGQ---GSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAA-GVS-GLNAGNAASIPSKCGVSIPYT 82 (93)
T ss_dssp HHHHGGGHHHHTTS---CCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHT-TST-TCCHHHHHHHHHHHHCCCSSC
T ss_pred HHhccCcHHHHcCC---CCCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccc-ccc-CcCHHHHHHHHHHcCCCCCCC
Confidence 45799999999986 467999999999999741 368999876432 123 79999999999999999886
Q ss_pred ----CCcCCC
Q 030083 74 ----VQCKAS 79 (183)
Q Consensus 74 ----~~C~~~ 79 (183)
++|+..
T Consensus 83 is~~~dC~~v 92 (93)
T 1afh_A 83 ISTSTDCSRV 92 (93)
T ss_dssp CSTTCCSSSC
T ss_pred CCCCCCCccC
Confidence 489864
No 3
>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}
Probab=99.49 E-value=1.1e-15 Score=112.60 Aligned_cols=70 Identities=30% Similarity=0.678 Sum_probs=56.5
Q ss_pred CCcccCcHHHhhcCCCCCCCCCHHHHHHHHHhhCC-------CCCceeeeecCCCCccc-CCCHHHHhhccccCCCCCCC
Q 030083 2 LTTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGN-------SLDCVCLIVTASVPFRV-PINRTLAISLPRACNMPSVP 73 (183)
Q Consensus 2 l~~LaPCl~Yltg~s~~~~sPs~~CC~gLksl~~~-------~~~CLC~~~~~~~~~~i-~IN~trAlsLP~~Cgv~~pp 73 (183)
+..|+||++|++++ +. |+ +||++||+|++. +..|+|++... ..+ +||.++|++||++|||++++
T Consensus 8 ~~~L~pCl~y~~~~---~~-P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~~---~~~~~in~~~A~~LP~~C~v~~p~ 79 (91)
T 1t12_A 8 TSNLAPCLAYLRNT---GP-LG-RCCGGVKALVNSARTTEDRQIACTCLKSAA---GAISGINLGKAAGLPSTCGVNIPY 79 (91)
T ss_dssp HHHTHHHHHHHTTS---SC-CT-THHHHHHHHHHTTCSTHHHHHHHHHHHHHH---HHCTTCCHHHHHHHHHHTTCCCSS
T ss_pred HHhccCcHHHHcCC---CC-hH-HHHHHHHHHHhhccCCCCCCccCCCccccc---cccCCcChhHHHHHHHHcCCCCCC
Confidence 35799999999986 34 88 999999999864 47899985321 233 79999999999999999886
Q ss_pred -----CCcCCC
Q 030083 74 -----VQCKAS 79 (183)
Q Consensus 74 -----~~C~~~ 79 (183)
++|+..
T Consensus 80 ~is~~~dC~~v 90 (91)
T 1t12_A 80 KISPSTDCSKV 90 (91)
T ss_dssp CSSSSSCCTTC
T ss_pred CCCCCCCCccC
Confidence 488864
No 4
>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*
Probab=99.49 E-value=9.9e-16 Score=112.80 Aligned_cols=71 Identities=20% Similarity=0.575 Sum_probs=57.2
Q ss_pred CcccCcHHHhhcCCCCCCCCCHHHHHHHHHhhC-------CCCCceeeeecCCCCcccCCCHHHHhhccccCCCCCCC--
Q 030083 3 TTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTG-------NSLDCVCLIVTASVPFRVPINRTLAISLPRACNMPSVP-- 73 (183)
Q Consensus 3 ~~LaPCl~Yltg~s~~~~sPs~~CC~gLksl~~-------~~~~CLC~~~~~~~~~~i~IN~trAlsLP~~Cgv~~pp-- 73 (183)
..|+||++|++++ ..|+.+||++||+|++ .+..|+|++.... .++ +||.++|++||++|||++++
T Consensus 9 ~~L~pCl~y~~~~----~~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~-~~~-~in~~~A~~LP~~Cgv~~p~~i 82 (92)
T 2alg_A 9 SSLAPCIPYVRGG----GAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSA-SVP-GVNPNNAAALPGKCGVSIPYKI 82 (92)
T ss_dssp HHHGGGHHHHHHC----SCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH-HST-TCCHHHHHHHHHHTTCCCSSCS
T ss_pred HhccCcHHHHcCC----CCCCHHHHHHHHHHHhhhcccCCCCcCCccccCccc-ccC-ccChHHHHHHHHHcCCCCCCCC
Confidence 4799999999986 3588999999999973 3478999975431 123 79999999999999999886
Q ss_pred ---CCcCCC
Q 030083 74 ---VQCKAS 79 (183)
Q Consensus 74 ---~~C~~~ 79 (183)
+||+..
T Consensus 83 s~~~dC~~v 91 (92)
T 2alg_A 83 SASTNCATV 91 (92)
T ss_dssp STTSCGGGC
T ss_pred CCCCCCccC
Confidence 488764
No 5
>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}
Probab=99.48 E-value=2.8e-15 Score=110.21 Aligned_cols=71 Identities=28% Similarity=0.560 Sum_probs=57.2
Q ss_pred CCcccCcHHHhhcCCCCCCCCCHHHHHHHHHhhCC-------CCCceeeeecCCCCccc-CCCHHHHhhccccCCCCCCC
Q 030083 2 LTTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGN-------SLDCVCLIVTASVPFRV-PINRTLAISLPRACNMPSVP 73 (183)
Q Consensus 2 l~~LaPCl~Yltg~s~~~~sPs~~CC~gLksl~~~-------~~~CLC~~~~~~~~~~i-~IN~trAlsLP~~Cgv~~pp 73 (183)
+..|+||++|++++ +. |+.+||++||+|++. +..|+|++... ..+ +||.++|++||++||+++++
T Consensus 7 ~~~L~pCl~yv~~~---~~-Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~k~~~---~~~~~in~~~A~~LP~~Cgv~~p~ 79 (91)
T 1siy_A 7 QGNLAQCIGFLQKG---GV-VPPSCCTGVKNILNSSRTTADRRAVCSCLKAAA---GAVRGINPNNAEALPGKCGVNIPY 79 (91)
T ss_dssp HHHHHHHHHHHTSC---SC-CCHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHT---TCCSSCCHHHHHHHHHHHTCCCSS
T ss_pred HHhccCcHHHHhCC---CC-CcHHHHHHHHHHHhhhccCCCCCcCCcccCCcc---cccCCcCHHHHHHHHHHcCCCCCC
Confidence 45799999999986 23 999999999999754 35899984321 244 79999999999999999876
Q ss_pred -----CCcCCC
Q 030083 74 -----VQCKAS 79 (183)
Q Consensus 74 -----~~C~~~ 79 (183)
+||+..
T Consensus 80 ~is~~~dC~~v 90 (91)
T 1siy_A 80 KISTSTNCNSI 90 (91)
T ss_dssp CSCTTSCSSTT
T ss_pred CCCCCCCCccC
Confidence 489864
No 6
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=99.48 E-value=1.2e-15 Score=111.98 Aligned_cols=70 Identities=27% Similarity=0.596 Sum_probs=56.4
Q ss_pred CCcccCcHHHhhcCCCCCCCCCHHHHHHHHHhhCC-------CCCceeeeecCCCCccc-CCCHHHHhhccccCCCCCCC
Q 030083 2 LTTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGN-------SLDCVCLIVTASVPFRV-PINRTLAISLPRACNMPSVP 73 (183)
Q Consensus 2 l~~LaPCl~Yltg~s~~~~sPs~~CC~gLksl~~~-------~~~CLC~~~~~~~~~~i-~IN~trAlsLP~~Cgv~~pp 73 (183)
+..|+||++|++++ +. |+.+||++||+|++. +..|+|++... ..+ +||.++|++||++|||++++
T Consensus 7 ~~~L~pCl~y~~~~---~~-Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~---~~~~~in~~~A~~LP~~C~v~~p~ 79 (90)
T 1bwo_A 7 DSLVRPCLSYVQGG---PG-PSGQCCDGVKNLHNQARSQSDRQSACNCLKGIA---RGIHNLNEDNARSIPPKCGVNLPY 79 (90)
T ss_dssp HHHHGGGHHHHTTC---SC-CCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH---TTCTTCCHHHHHTHHHHHTCCCSS
T ss_pred HHhhcccHHHHcCC---CC-CCHHHhHHHHHHHhhccCCCCCCccCcCccCch---hccCCcCHHHHHHHHHHcCCCCCC
Confidence 35799999999986 34 999999999999842 46899975432 233 79999999999999999886
Q ss_pred -----CCcCC
Q 030083 74 -----VQCKA 78 (183)
Q Consensus 74 -----~~C~~ 78 (183)
+||+.
T Consensus 80 ~is~~~dC~~ 89 (90)
T 1bwo_A 80 TISLNIDCSR 89 (90)
T ss_dssp CCCTTCCGGG
T ss_pred CCCCCCCCCC
Confidence 48875
No 7
>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}
Probab=99.43 E-value=4e-15 Score=105.93 Aligned_cols=69 Identities=25% Similarity=0.598 Sum_probs=55.6
Q ss_pred CCcccCcHHHhhcCCCCCCCCCHHHHHHHHHhhCCCCCceeeeecCCCCcccCCCHHHHhhccccCCCCCCCCCc
Q 030083 2 LTTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGNSLDCVCLIVTASVPFRVPINRTLAISLPRACNMPSVPVQC 76 (183)
Q Consensus 2 l~~LaPCl~Yltg~s~~~~sPs~~CC~gLksl~~~~~~CLC~~~~~~~~~~i~IN~trAlsLP~~Cgv~~pp~~C 76 (183)
+..|++|++|++++ +...|+.+||++||+ .|..|||.++++.....++||.++|+.||++||+++++ +|
T Consensus 9 ~~~L~pC~~yv~~~--~~~~Ps~~CC~~lk~---~~~~ClC~~~~~~~~~~~gin~~~A~~LP~~Cgv~~p~-~C 77 (77)
T 2rkn_A 9 QDELNECKPAVSKE--NPTSPSQPCCTALQH---ADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAP-TC 77 (77)
T ss_dssp HHHHHHHGGGGBSS--SCCCCCHHHHHHHTT---CCHHHHHTTTTCHHHHHHTBCHHHHHHHHHHTTCSCCC-CC
T ss_pred HHhHhhCHHHHcCC--CCCCCCHHHHHHHHh---cCcCCcCcccCCcchhhcCcCHHHHHHHHHHcCCCCCC-CC
Confidence 35689999999974 246899999999998 46799999987532234579999999999999999753 44
No 8
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=99.30 E-value=2.5e-13 Score=94.85 Aligned_cols=61 Identities=20% Similarity=0.519 Sum_probs=51.3
Q ss_pred CcccCcHHHhhcCCCCCCCCCHHHHHHHHHhhCCCCCceeeeecCCCCcccCCCHHHHhhccccCCCCCC
Q 030083 3 TTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGNSLDCVCLIVTASVPFRVPINRTLAISLPRACNMPSV 72 (183)
Q Consensus 3 ~~LaPCl~Yltg~s~~~~sPs~~CC~gLksl~~~~~~CLC~~~~~~~~~~i~IN~trAlsLP~~Cgv~~p 72 (183)
..|+||++||+++ ..|+.+||++||.. ..|+|.++++.. +...||.++|+.||++|||+++
T Consensus 5 ~~L~pC~~~v~~~----~~Ps~~CC~~lk~~----~~ClC~~~k~~~-~~~~in~~~A~~Lp~~Cgv~~P 65 (67)
T 1n89_A 5 SQLAVCASAILSG----AKPSGECCGNLRAQ----QGCFCQYAKDPT-YGQYIRSPHARDTLTSCGLAVP 65 (67)
T ss_dssp STTHHHHHHHTTC----CCCCHHHHHHHHHH----SSHHHHGGGCST-THHHHTCHHHHHHHHHHTSCCS
T ss_pred hhcccCHHHHcCC----CCCCHHHHHhhCCC----CCCCCccccCcc-cccccCHHHHHHHHHHcCCCCC
Confidence 5799999999975 47999999999983 789998877642 3336999999999999999875
No 9
>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1
Probab=99.27 E-value=3.4e-13 Score=94.64 Aligned_cols=64 Identities=20% Similarity=0.504 Sum_probs=52.6
Q ss_pred CCcccCcHHHhhcCCCCCCCCCHHHHHHHHHhhCCCCCceeeeecCCCCcccCCCHHHHhhccccCCCCCCCCCc
Q 030083 2 LTTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGNSLDCVCLIVTASVPFRVPINRTLAISLPRACNMPSVPVQC 76 (183)
Q Consensus 2 l~~LaPCl~Yltg~s~~~~sPs~~CC~gLksl~~~~~~CLC~~~~~~~~~~i~IN~trAlsLP~~Cgv~~pp~~C 76 (183)
...|+||++||+++ ..|+.+||++||.. ..|+|.++++.. +...||.++|+.||++|||+++ +|
T Consensus 5 ~~~L~pC~~~v~~~----~~Ps~~CC~~lk~~----~~ClC~~~k~~~-~~~~in~~~A~~Lp~~Cgv~~P--~C 68 (69)
T 1l6h_A 5 AGQLTVCTGAIAGG----ARPTAACCSSLRAQ----QGCFCQFAKDPR-YGRYVNSPNARKAVSSCGIALP--TC 68 (69)
T ss_dssp TTTHHHHHHHHTTC----CSTTHHHHHHHHHH----HHHHHHHTTCSS-HHHHTTTTTGGGCCCCCSSCSC--CC
T ss_pred hhhcccCHHHHcCC----CCCCHHHHHhhCCC----CCCCCccccCcc-cccccCHHHHHHHHHHcCCCCC--CC
Confidence 35799999999975 47999999999983 689998876532 3336999999999999999875 56
No 10
>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1
Probab=93.07 E-value=0.012 Score=42.61 Aligned_cols=67 Identities=21% Similarity=0.555 Sum_probs=48.6
Q ss_pred cccCcHHHhhcCCCCCCCCCHHHHHHHHHhhCCC-CCceeeeecCCCCcccCCCHHHHhh-ccccCCCCCCC-CCcCC
Q 030083 4 TFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGNS-LDCVCLIVTASVPFRVPINRTLAIS-LPRACNMPSVP-VQCKA 78 (183)
Q Consensus 4 ~LaPCl~Yltg~s~~~~sPs~~CC~gLksl~~~~-~~CLC~~~~~~~~~~i~IN~trAls-LP~~Cgv~~pp-~~C~~ 78 (183)
+|--|.+-+.+. ..+...||.-++.+.+.+ ..|||..++. +++ +|...+++ |-..||...+. |+|..
T Consensus 10 kLgvCanvL~g~----~~~~~~CC~Ll~GL~dleAAvCLCtaik~---Lgi-lnlpv~L~llln~Cgk~~P~gF~C~~ 79 (80)
T 1hyp_A 10 DLSICLNILGGS----LGTVDDCCALIGGLGDIEAIVCLCIQLRA---LGI-LNLNRNLQLILNSCGRSYPSNATCPR 79 (80)
T ss_dssp CCGGGGGGGGTC----CTTHHHHHHHHHTSCHHHHHHHHHHHHHH---HTC-SCHHHHHHHHHHHTTCSSCCCCCCSC
T ss_pred chhHHHHHhCcC----CCCCCccchhhhCcchhhhhhhhhhhccc---cce-eecChhHHHHHHHhCCcCcCCCCCCC
Confidence 355688877542 236689999999998764 5799988762 455 67766776 55689998776 78863
No 11
>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli}
Probab=89.38 E-value=0.01 Score=52.95 Aligned_cols=53 Identities=19% Similarity=0.541 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhCCCCCceeeeecCCCCc---------ccCCCHHHHhhccccCCCCCCCCCcCC
Q 030083 24 SDCCGSLKNLTGNSLDCVCLIVTASVPF---------RVPINRTLAISLPRACNMPSVPVQCKA 78 (183)
Q Consensus 24 ~~CC~gLksl~~~~~~CLC~~~~~~~~~---------~i~IN~trAlsLP~~Cgv~~pp~~C~~ 78 (183)
.+||+.|+.+.+ ++.|.|..+...+.. ....=..+|..||..||+. .+..|+-
T Consensus 429 ~~cc~~l~~~~~-~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~c~~~-~~~~c~~ 490 (500)
T 3ob4_A 429 ERCCNELNEFEN-NQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLR-APQRCDL 490 (500)
T ss_dssp HHHHHHHGGGTT-CHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHTHHHHTTCC-CCSCCCC
T ss_pred HHHHHHHHhCCc-ccccccHHHHHHHHHHHHHhhhHHHHHHHHHHHhhCchhcCCC-CCccCCc
Confidence 789999999732 279999877542110 0111135599999999998 3457874
No 12
>1pnb_B Napin BNIB; napin IA and IB, albumin SEED protein, SEED storage protein; NMR {Brassica napus} SCOP: a.52.1.3
Probab=69.51 E-value=0.43 Score=33.35 Aligned_cols=53 Identities=25% Similarity=0.467 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHhhCCCCCceeeeecCCC-----Cccc-----CCCHHHHhhccccCCCCCCCCCcC
Q 030083 21 SPSSDCCGSLKNLTGNSLDCVCLIVTASV-----PFRV-----PINRTLAISLPRACNMPSVPVQCK 77 (183)
Q Consensus 21 sPs~~CC~gLksl~~~~~~CLC~~~~~~~-----~~~i-----~IN~trAlsLP~~Cgv~~pp~~C~ 77 (183)
..-..||+-|+.+ +..|.|..+.... ...+ .-...+|..||..||+... -.|+
T Consensus 9 ~~~qqCC~qL~~~---~~~CrC~aL~~~~~~~~~qgq~~~~q~~~~~q~a~~LP~~Cnl~~~-~~C~ 71 (75)
T 1pnb_B 9 WLREQCCNELYQE---DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQI-GTCP 71 (75)
T ss_dssp SCTHHHHHHHHTS---CGGGSHHHHHHHHHHHHSGGGCSSCCHHHHHHHCCSCSCSSCCTTT-CCCC
T ss_pred HHHHHHHHHHHhC---CcccccHHHHHHHHHHHHHcccchHHHHHHHHHHHhhHHhcCCCCC-CCCC
Confidence 4458999999996 6889998775421 0001 1235567899999999632 3565
No 13
>1s6d_A Albumin 8; all helix, folded LEAF, right-handed superhelix, disulphide rich, plant protein; NMR {Helianthus annuus} SCOP: a.52.1.3
Probab=67.42 E-value=2 Score=31.62 Aligned_cols=68 Identities=26% Similarity=0.516 Sum_probs=44.3
Q ss_pred ccCcHHHhhcCCC---C----C--CCCCHHHHHHHHHhhCCCCCceeeeecCCCC--cc---cCCCHHHHhhccccCCCC
Q 030083 5 FTPCMNFLTNSSG---S----G--TSPSSDCCGSLKNLTGNSLDCVCLIVTASVP--FR---VPINRTLAISLPRACNMP 70 (183)
Q Consensus 5 LaPCl~Yltg~s~---~----~--~sPs~~CC~gLksl~~~~~~CLC~~~~~~~~--~~---i~IN~trAlsLP~~Cgv~ 70 (183)
|..|-.||..... + . ...-..||+-|+.+ +..|.|..+...+. +. ..-...+|..||..|||.
T Consensus 21 L~~Cq~yv~qq~~~~~~~~~~~~~e~~~qqCC~qL~~~---~~~CrC~al~~~~Q~q~~g~q~~~~~q~A~~LP~~C~i~ 97 (103)
T 1s6d_A 21 LNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL---DEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM 97 (103)
T ss_dssp TTHHHHHHTTTTSSCCCCSSSCCCCCCSHHHHHHHHHS---CGGGSSHHHHHHTTSTTCSSTHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHhhccCCcccccccHHHHHHHHHHHHhc---CcccCcHHHHHHHHHHhcchhHHHHHHHHHhcHHhcCCC
Confidence 8889999974210 0 0 12458999999995 68999988754221 11 112345688999999996
Q ss_pred CCCCCcC
Q 030083 71 SVPVQCK 77 (183)
Q Consensus 71 ~pp~~C~ 77 (183)
. ..|+
T Consensus 98 p--~~C~ 102 (103)
T 1s6d_A 98 S--QPCQ 102 (103)
T ss_dssp S--SCSC
T ss_pred c--ccCC
Confidence 3 3464
No 14
>2ds2_B Sweet protein mabinlin-2 chain B; plant protein, SEED storage protein; 1.70A {Capparis masaikai}
Probab=51.79 E-value=1 Score=31.37 Aligned_cols=50 Identities=26% Similarity=0.578 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhCCCCCceeeeecCCCC-----cc-c-----CCCHHHHhhccccCCCCCCCCCcC
Q 030083 24 SDCCGSLKNLTGNSLDCVCLIVTASVP-----FR-V-----PINRTLAISLPRACNMPSVPVQCK 77 (183)
Q Consensus 24 ~~CC~gLksl~~~~~~CLC~~~~~~~~-----~~-i-----~IN~trAlsLP~~Cgv~~pp~~C~ 77 (183)
..||+-|+.+ +..|.|..+..... .. . .-...+|..||..||+.. +-.|+
T Consensus 8 qqCC~eL~~~---~~~CrC~aL~~~~~~~~qqgq~~~~qq~~~~~q~a~~LP~~C~l~~-~~~C~ 68 (72)
T 2ds2_B 8 RQCCNQLRQV---DRPCVCPVLRQAAQQVLQRQIIQGPQQLRRLFDAARNLPNICNIPN-IGACP 68 (72)
T ss_dssp HHHHHHHTTS---CGGGHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCTT-CCCCC
T ss_pred HHHHHHHHhc---CccccCHHHHHHHHHHHHhhhhhchHHHHHHHHHHHhhHHhcCCCC-CCcCC
Confidence 6799999985 78999987764220 01 1 124567889999999952 23565
No 15
>1w2q_A Conglutin, ARA H 6; allergen, allergene; NMR {Arachis hypogaea}
Probab=51.38 E-value=1.8 Score=33.27 Aligned_cols=73 Identities=21% Similarity=0.518 Sum_probs=44.9
Q ss_pred cccCcHHHhhcCCCCCC-------CC-------CHHHHHHHHHhhCCCCCceeeeecCCC---Cccc-C--CC---HHHH
Q 030083 4 TFTPCMNFLTNSSGSGT-------SP-------SSDCCGSLKNLTGNSLDCVCLIVTASV---PFRV-P--IN---RTLA 60 (183)
Q Consensus 4 ~LaPCl~Yltg~s~~~~-------sP-------s~~CC~gLksl~~~~~~CLC~~~~~~~---~~~i-~--IN---~trA 60 (183)
.|..|-.||.-...... .- -..||+.|+.+. ++..|.|..+...+ ...+ + +. ..+|
T Consensus 24 qL~~Cq~yl~q~~~~~~~~~~~~~~~~~~~e~~lqqCC~qL~q~~-~~~qCrCeaL~q~~Q~qq~q~~gqq~~~~~~q~A 102 (127)
T 1w2q_A 24 NLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEME-NTQGCMCEALQQIMENQCDRLQDRQMVQQFKREL 102 (127)
T ss_dssp CCHHHHHHHHTGGGSSSSSCSCCCTTSCCHHHHHHHHHHHHHHTS-CCCTTHHHHHHHHHHHSCTTTTTSTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhccCCccchhhcccccHHHHHHHHHHHHhhc-cCCCccCHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 47889999974210000 01 378999999953 36899998776432 1112 1 22 3568
Q ss_pred hhccccCCCCCCCCCcCC
Q 030083 61 ISLPRACNMPSVPVQCKA 78 (183)
Q Consensus 61 lsLP~~Cgv~~pp~~C~~ 78 (183)
..||..|++..+ -.|+-
T Consensus 103 ~~LP~~C~i~~~-~~C~~ 119 (127)
T 1w2q_A 103 MSLPQQCNFRAP-QRCDL 119 (127)
T ss_dssp HHHHHHHTCCCS-SCCSC
T ss_pred HHhHHhcCCCCC-CcCCC
Confidence 899999999422 35653
No 16
>1b1u_A Protein (alpha-amylase/trypsin inhibitor RATI); bifunctional, hydrolase inhibitor; 2.20A {Eleusine coracana} SCOP: a.52.1.2 PDB: 1bip_A 1tmq_B
Probab=45.07 E-value=3.3 Score=31.61 Aligned_cols=67 Identities=19% Similarity=0.454 Sum_probs=41.1
Q ss_pred CcccCcHHHhhcC-CCC-CCCC----CHHHHHHHHHhhCCCCCceeeeecCCCC---------cc--cCC--------CH
Q 030083 3 TTFTPCMNFLTNS-SGS-GTSP----SSDCCGSLKNLTGNSLDCVCLIVTASVP---------FR--VPI--------NR 57 (183)
Q Consensus 3 ~~LaPCl~Yltg~-s~~-~~sP----s~~CC~gLksl~~~~~~CLC~~~~~~~~---------~~--i~I--------N~ 57 (183)
..|..|..||..- -.. ...| -.+||+.|+.+ +..|.|..+..-.. .+ +.. -.
T Consensus 15 ~~L~~Cr~Yv~~q~C~~g~~~p~~~~~~~CC~QL~~i---~~~CRC~ALr~m~~~~~~~~g~~~g~~~~~~pgC~re~~~ 91 (122)
T 1b1u_A 15 NPLDSCRWYVSTRTCGVGPRLATQEMKARCCRQLEAI---PAYCRCEAVRILMDGVVTPSGQHEGRLLQDLPGCPRQVQR 91 (122)
T ss_dssp STTTHHHHHHHHHHHCCCCSSCHHHHHHHHHHHHHHS---CHHHHHHHHHHHHTCEECTTSCEECCCCCCCTTCCHHHHH
T ss_pred ccchHHHHHHHHhcccCCCCCchHHHHHHHHHHHHhC---CccccHHHHHHHHHhhhhhhcccccccchhccCCcHHHHH
Confidence 4588899999632 000 1123 35699999996 57899976543110 00 011 11
Q ss_pred HHHhhc--cccCCCCCC
Q 030083 58 TLAISL--PRACNMPSV 72 (183)
Q Consensus 58 trAlsL--P~~Cgv~~p 72 (183)
..|..| |..||+...
T Consensus 92 ~~A~~Lv~P~~Cnl~~~ 108 (122)
T 1b1u_A 92 AFAPKLVTEVECNLATI 108 (122)
T ss_dssp HHGGGTTSTTTTCCCCT
T ss_pred HHHHhcCCcccCCCCCC
Confidence 357889 999999765
No 17
>1psy_A 2S albumin, RICC3; albumin SEED protein, SEED storage protein, plant protein; NMR {Ricinus communis} SCOP: a.52.1.3
Probab=44.52 E-value=3.1 Score=31.67 Aligned_cols=63 Identities=19% Similarity=0.455 Sum_probs=40.8
Q ss_pred cccCcHHHhhcCCCCCC-------CC-----------CHHHHHHHHHhhCCCCCceeeeecCCC-------Cc-c--cCC
Q 030083 4 TFTPCMNFLTNSSGSGT-------SP-----------SSDCCGSLKNLTGNSLDCVCLIVTASV-------PF-R--VPI 55 (183)
Q Consensus 4 ~LaPCl~Yltg~s~~~~-------sP-----------s~~CC~gLksl~~~~~~CLC~~~~~~~-------~~-~--i~I 55 (183)
.|.+|..||.-...... .+ -..||+.|+.+ +..|.|..+...+ .. + +.-
T Consensus 26 ~L~~Cq~yv~qq~~~~~~~~~~~~~~~~e~~~qe~~~~qqCC~qL~~~---~~~C~C~aL~~~v~~~~qQgq~~gqq~~~ 102 (125)
T 1psy_A 26 DLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV---RDECQCEAIKYIAEDQIQQGQLHGEESER 102 (125)
T ss_dssp TTSSHHHHHHSSSCCCCSCSCCCCSSCSSSCSSSCHHHHHHHHHHTTC---CSSHHHHHHHHHHHHHHHHTTCCTTCSHH
T ss_pred hHHHHHHHHHHHHhcccCcchhhhcchhhcccccHHHHHHHHHHHHhc---CcccccHHHHHHHHHHHHHhhhhHHHHHH
Confidence 58899999985210000 12 37899999985 7899998874421 00 1 011
Q ss_pred CHHHHhhccccCCC
Q 030083 56 NRTLAISLPRACNM 69 (183)
Q Consensus 56 N~trAlsLP~~Cgv 69 (183)
-..+|..||..|||
T Consensus 103 ~~q~A~~LP~~C~i 116 (125)
T 1psy_A 103 VAQRAGEIVSSCGV 116 (125)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHcCC
Confidence 24567889999999
No 18
>1bea_A Bifunctional amylase/serine protease inhibitor; amylase/protease bifunctional inhibitor; 1.95A {Zea mays} SCOP: a.52.1.2 PDB: 1bfa_A
Probab=43.71 E-value=5.1 Score=30.80 Aligned_cols=74 Identities=20% Similarity=0.474 Sum_probs=44.0
Q ss_pred CcccCcHHHhhcC-CCC-CCCC----CHHHHHHHHHhhCCCCCceeeeecCCC---C--------cc-cCCC--------
Q 030083 3 TTFTPCMNFLTNS-SGS-GTSP----SSDCCGSLKNLTGNSLDCVCLIVTASV---P--------FR-VPIN-------- 56 (183)
Q Consensus 3 ~~LaPCl~Yltg~-s~~-~~sP----s~~CC~gLksl~~~~~~CLC~~~~~~~---~--------~~-i~IN-------- 56 (183)
..|-.|..||..- -.. ...| -..||+.|+.+ ...|.|..+..-. . .+ ++.-
T Consensus 15 ~pL~~CR~Yv~~q~C~~g~~~p~e~~~~~CC~QL~~i---~~~CRC~ALr~m~~~~~~~~~~~~~~G~~~~~pgC~re~~ 91 (127)
T 1bea_A 15 NPLPSCRWYVTSRTCGIGPRLPWPELKRRCCRELADI---PAYCRCTALSILMDGAIPPGPDAQLEGRLEDLPGCPREVQ 91 (127)
T ss_dssp SCCHHHHHHHHHHHHSCCCSSCHHHHHHHHHHHHHTS---CGGGHHHHHHHHHHCBCCCSSSCCCBCCCCCBTTBCHHHH
T ss_pred ccchHHHHHHHHhhcccCCCCchHHHHHHHHHHHHhc---CcccchHHHHHHHHhhhcccccccccccccccCCCcHHHH
Confidence 4577899999631 000 1123 35699999995 5789997654311 0 01 1111
Q ss_pred HHHHhhc--cccCCCCCCC--CCcCCC
Q 030083 57 RTLAISL--PRACNMPSVP--VQCKAS 79 (183)
Q Consensus 57 ~trAlsL--P~~Cgv~~pp--~~C~~~ 79 (183)
...|..| |..||+.... ..|...
T Consensus 92 ~~~A~~Lv~P~~Cnl~~~~g~~~C~~~ 118 (127)
T 1bea_A 92 RGFAATLVTEAECNLATISGVAECPWI 118 (127)
T ss_dssp HHHHTTTTSTTTTCCCCTTSSSCCTTT
T ss_pred HHHHHhcCCcccCCCCCCCCCCCCCcc
Confidence 3357889 9999997652 266553
No 19
>1sm7_A Recombinant IB pronapin; all alpha-helix, right-handed superhelix, plant protein; NMR {Brassica napus}
Probab=34.71 E-value=1.7 Score=32.05 Aligned_cols=70 Identities=23% Similarity=0.508 Sum_probs=43.0
Q ss_pred cccCcHHHhhcC---CCCCCC-------C--CHHHHHHHHHhhCCCCCceeeeecCCC-----Cccc-----CCCHHHHh
Q 030083 4 TFTPCMNFLTNS---SGSGTS-------P--SSDCCGSLKNLTGNSLDCVCLIVTASV-----PFRV-----PINRTLAI 61 (183)
Q Consensus 4 ~LaPCl~Yltg~---s~~~~s-------P--s~~CC~gLksl~~~~~~CLC~~~~~~~-----~~~i-----~IN~trAl 61 (183)
.|.+|..||.-. ...... + -..||+.|+.+ +..|.|..+...+ ...+ .-...+|.
T Consensus 14 ~L~~C~~yv~qq~~~~~~~~~~~~~~~~~~~~qqCC~qL~~v---~~qCrC~al~~~v~~~~~qgq~~~~~~~~~~~~a~ 90 (109)
T 1sm7_A 14 HLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE---DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAK 90 (109)
T ss_dssp CCSSHHHHGGGGTTSSCCCSCSSSCTTCCTTHHHHHHHTTTT---CHHHHTTTTHHHHHTSSCSSCCCTTHHHHHHHTTS
T ss_pred cHHHHHHHHHHHhcCCCcccccccccccHHHHHHHHHHHHhc---CccCCCHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 488999999731 000011 2 36899999986 6789998775411 0001 11334578
Q ss_pred hccccCCCCCCCCCcC
Q 030083 62 SLPRACNMPSVPVQCK 77 (183)
Q Consensus 62 sLP~~Cgv~~pp~~C~ 77 (183)
.||..||+... -.|.
T Consensus 91 ~LP~~Cnl~~~-~~C~ 105 (109)
T 1sm7_A 91 NLPNVCNMKQI-GTCP 105 (109)
T ss_dssp SHHHHSCCCSS-CSSC
T ss_pred hCHHhcCCCCC-CCCC
Confidence 89999999632 2464
No 20
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=27.26 E-value=32 Score=20.26 Aligned_cols=11 Identities=36% Similarity=0.966 Sum_probs=8.8
Q ss_pred HHHHHHHHhhc
Q 030083 172 LFVLGFVVLKY 182 (183)
Q Consensus 172 ~~~~~~~~~~~ 182 (183)
++++||.+|||
T Consensus 18 flafgfwlfky 28 (32)
T 2lx0_A 18 FLAFGFWLFKY 28 (32)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45889999987
Done!