BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030084
         (183 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2Z51|A Chain A, Crystal Structure Of Arabidopsis Cnfu Involved In Iron-
           Sulfur Cluster Biosynthesis
          Length = 154

 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/78 (51%), Positives = 52/78 (66%), Gaps = 1/78 (1%)

Query: 77  LTAKNVDLVLEDVRPYLIADGGNIXXXXXXXXXXXXKLQGACGSCPSSTTTMSMGIERVL 136
           LT +NV+ VL+++RPYL++DGGN+            KLQGACGSCPSST TM MGIER L
Sbjct: 4   LTEENVESVLDEIRPYLMSDGGNVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIERRL 63

Query: 137 KEKFGDAIKDIRQVYDEE 154
            EK  + +  +  + DEE
Sbjct: 64  MEKIPEIVA-VEALPDEE 80



 Score = 30.4 bits (67), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 2/25 (8%)

Query: 75  FDLTAKNVDLVLEDVRPYLI--ADG 97
            +L  +N++ VLE++RPYLI  ADG
Sbjct: 83  LELNEENIEKVLEEIRPYLIGTADG 107


>pdb|2JNV|A Chain A, Solution Structure Of C-Terminal Domain Of Nifu-Like
           Protein From Oryza Sativa
          Length = 91

 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 48/80 (60%), Gaps = 1/80 (1%)

Query: 75  FDLTAKNVDLVLEDVRPYLIADGGNIXXXXXXXXXXXXKLQGACGSCPSSTTTMSMGIER 134
             LTA NV+ VL+ VRPYL ADGG++            KLQGACGSCPSS  T+  GIER
Sbjct: 3   LPLTAGNVESVLDQVRPYLTADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRGIER 62

Query: 135 VLKEKFGDAIKDIRQVYDEE 154
            L EK  D +  +  V D+E
Sbjct: 63  RLMEKIPD-VAAVEPVTDKE 81


>pdb|1XHJ|A Chain A, Solution Structure Of The Staphylococcus Epidermidis
           Protein Se0630. Northest Structural Genomics Consortium
           Target Ser8
          Length = 88

 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 5/79 (6%)

Query: 75  FDLTAKNVDLVLEDVRPYLIADGGNIXXXXXXXXXXXXKLQGACGSCPSSTTTMSMGIER 134
           FD  A+    V+E +RP+L+ DGG+             +L GACG+CPSST T+  GIER
Sbjct: 9   FDQVAE----VIERLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIER 64

Query: 135 VLKEKFGDAIKDIRQVYDE 153
            L E+    I ++ QV+ E
Sbjct: 65  ALHEEVPGVI-EVEQVFLE 82


>pdb|1VEH|A Chain A, Solution Structure Of Rsgi Ruh-018, A Nifu-Like Domain Of
           Hirip5 Protein From Mouse Cdna
          Length = 92

 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 28/49 (57%)

Query: 89  VRPYLIADGGNIXXXXXXXXXXXXKLQGACGSCPSSTTTMSMGIERVLK 137
           +RP +  DGG++            KLQG+C SCPSS  T+  GI+ +L+
Sbjct: 26  IRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQ 74


>pdb|1TH5|A Chain A, Solution Structure Of C-Terminal Domain Of Nifu-Like
          Protein From Oryza Sativa
          Length = 74

 Score = 30.0 bits (66), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 75 FDLTAKNVDLVLEDVRPYLIADGGN 99
           +L  +NV+ VL ++RPYL   GG 
Sbjct: 2  LELNEENVEKVLNEIRPYLAGTGGG 26


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.131    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,010,603
Number of Sequences: 62578
Number of extensions: 113132
Number of successful extensions: 338
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 332
Number of HSP's gapped (non-prelim): 6
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)