Query 030084
Match_columns 183
No_of_seqs 162 out of 1069
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 13:09:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030084.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030084hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2z51_A NIFU-like protein 2, ch 100.0 2.4E-30 8.2E-35 208.4 9.2 107 75-182 2-110 (154)
2 1xhj_A Nitrogen fixation prote 99.9 6.8E-28 2.3E-32 179.1 8.5 76 77-153 7-82 (88)
3 1veh_A NIFU-like protein hirip 99.9 1.4E-26 4.8E-31 173.1 8.0 78 77-155 13-91 (92)
4 1th5_A NIFU1; iron-sulfur clus 99.9 4.4E-24 1.5E-28 154.1 4.2 71 75-150 2-73 (74)
5 2z51_A NIFU-like protein 2, ch 99.8 1.4E-20 4.9E-25 151.4 8.3 72 74-150 82-154 (154)
6 3cq1_A Putative uncharacterize 97.1 0.0016 5.3E-08 47.6 6.7 67 78-147 7-77 (103)
7 1uwd_A Hypothetical protein TM 96.6 0.0054 1.9E-07 44.6 6.5 68 77-147 6-78 (103)
8 3lno_A Putative uncharacterize 96.4 0.0074 2.5E-07 44.6 6.2 88 73-162 4-100 (108)
9 1xg8_A Hypothetical protein SA 86.9 1.2 4.2E-05 34.2 5.5 53 118-171 22-75 (111)
10 1th5_A NIFU1; iron-sulfur clus 84.1 0.56 1.9E-05 33.2 2.3 26 157-182 3-29 (74)
11 3ux2_A MIP18 family protein FA 79.7 2.8 9.5E-05 32.7 5.0 58 107-167 49-106 (130)
12 1xhj_A Nitrogen fixation prote 52.1 6.2 0.00021 28.6 1.7 25 158-182 7-31 (88)
13 4evm_A Thioredoxin family prot 46.5 11 0.00039 25.1 2.3 68 96-167 11-78 (138)
14 3fry_A Probable copper-exporti 43.0 31 0.0011 21.7 3.9 29 109-147 6-35 (73)
15 3hcz_A Possible thiol-disulfid 40.4 30 0.001 23.7 3.8 33 97-129 21-54 (148)
16 2fa8_A Hypothetical protein AT 40.3 40 0.0014 25.0 4.6 38 108-150 8-45 (105)
17 3hdu_A Putative thioesterase; 39.9 1.1E+02 0.0038 22.5 7.7 60 79-140 13-73 (157)
18 4fpp_A Phosphotransferase; fou 39.8 24 0.00081 27.9 3.5 28 87-114 217-245 (247)
19 2b5x_A YKUV protein, TRXY; thi 39.6 8.1 0.00028 26.6 0.6 57 107-169 29-87 (148)
20 3dex_A SAV_2001; alpha-beta pr 36.1 50 0.0017 24.8 4.5 37 109-150 14-50 (107)
21 3kij_A Probable glutathione pe 33.8 22 0.00075 26.3 2.3 42 96-142 27-69 (180)
22 3myf_A Sensor protein; HPT, hi 32.4 21 0.00073 26.1 2.0 29 113-141 58-87 (119)
23 4hde_A SCO1/SENC family lipopr 31.5 20 0.00068 26.8 1.7 43 95-138 20-64 (170)
24 1veh_A NIFU-like protein hirip 31.4 21 0.0007 26.0 1.7 26 157-182 12-38 (92)
25 3qst_A Triosephosphate isomera 31.3 83 0.0028 26.5 5.7 52 130-181 143-216 (255)
26 2lrn_A Thiol:disulfide interch 30.7 39 0.0013 23.8 3.1 33 96-128 18-51 (152)
27 3gl3_A Putative thiol:disulfid 30.2 26 0.00088 24.4 2.0 33 96-128 17-50 (152)
28 4fo5_A Thioredoxin-like protei 29.9 17 0.00057 25.5 1.0 43 96-142 21-63 (143)
29 2oka_A Hypothetical protein; P 28.5 47 0.0016 24.6 3.3 39 107-150 5-43 (104)
30 2obi_A PHGPX, GPX-4, phospholi 28.2 63 0.0022 23.7 4.0 33 96-128 36-69 (183)
31 1m5h_A Formylmethanofuran--tet 27.4 26 0.00088 30.9 1.9 54 118-181 222-286 (297)
32 2b7k_A SCO1 protein; metalloch 27.1 48 0.0016 25.1 3.2 49 96-145 30-80 (200)
33 1r62_A Nitrogen regulation pro 26.8 54 0.0019 22.7 3.3 28 86-114 127-154 (160)
34 2p0g_A Selenoprotein W-related 26.6 51 0.0017 24.5 3.1 37 109-150 5-41 (105)
35 2kjw_A TS9, 30S ribosomal prot 26.6 36 0.0012 24.8 2.3 27 155-181 53-79 (96)
36 3r3t_A 30S ribosomal protein S 26.0 47 0.0016 23.7 2.8 26 156-181 15-40 (99)
37 2v1m_A Glutathione peroxidase; 25.9 87 0.003 22.0 4.3 33 96-128 20-53 (169)
38 1t3y_A Coactosin-like protein; 25.8 66 0.0022 24.1 3.7 64 109-179 75-138 (141)
39 4g1k_A Triosephosphate isomera 25.8 34 0.0012 29.3 2.3 52 130-182 166-236 (272)
40 1id0_A PHOQ histidine kinase; 25.2 52 0.0018 22.9 2.9 28 87-114 113-142 (152)
41 3or5_A Thiol:disulfide interch 24.6 31 0.001 24.3 1.6 42 96-142 23-65 (165)
42 1zof_A Alkyl hydroperoxide-red 24.6 83 0.0028 23.4 4.1 32 99-130 24-58 (198)
43 1zye_A Thioredoxin-dependent p 24.3 28 0.00095 27.2 1.4 34 96-129 45-80 (220)
44 3zzp_A TS9, ribosomal protein 24.3 40 0.0014 23.4 2.1 25 155-179 53-77 (77)
45 1ew4_A CYAY protein; friedreic 24.0 1.1E+02 0.0038 22.4 4.6 34 81-115 9-44 (106)
46 3dwv_A Glutathione peroxidase- 24.0 48 0.0016 24.7 2.6 34 96-129 35-69 (187)
47 3kxq_A Triosephosphate isomera 23.7 39 0.0013 29.0 2.3 53 130-182 166-237 (275)
48 1wj6_A KIAA0049 protein, RSGI 23.6 49 0.0017 24.8 2.6 44 126-172 36-83 (101)
49 2p31_A CL683, glutathione pero 23.6 86 0.0029 23.0 4.0 33 96-128 38-71 (181)
50 2qn6_B Translation initiation 23.5 44 0.0015 24.1 2.3 30 74-103 62-91 (93)
51 2zzt_A Putative uncharacterize 23.4 2E+02 0.0067 20.2 6.9 65 85-150 11-82 (107)
52 2l5o_A Putative thioredoxin; s 23.3 59 0.002 22.5 2.9 33 96-128 17-50 (153)
53 3ta6_A Triosephosphate isomera 23.0 41 0.0014 28.7 2.3 52 129-181 145-219 (267)
54 4a4j_A Pacszia, cation-transpo 22.9 1E+02 0.0034 18.6 3.6 51 109-168 3-60 (69)
55 2p5q_A Glutathione peroxidase 22.6 97 0.0033 21.8 4.0 33 96-128 21-54 (170)
56 2lja_A Putative thiol-disulfid 22.6 72 0.0025 22.0 3.2 42 96-142 19-61 (152)
57 1xzo_A BSSCO, hypothetical pro 22.6 97 0.0033 21.9 4.0 42 96-138 22-65 (174)
58 2vup_A Glutathione peroxidase- 22.2 61 0.0021 24.1 2.9 33 96-128 37-70 (190)
59 3dxs_X Copper-transporting ATP 22.0 1.3E+02 0.0046 18.3 4.2 24 110-141 4-28 (74)
60 2bkf_A Zinc-finger protein NBR 21.9 63 0.0022 23.5 2.8 44 126-172 28-75 (87)
61 3dfe_A Putative PII-like signa 21.7 64 0.0022 23.7 2.9 27 79-105 70-97 (111)
62 3jz3_A Sensor protein QSEC; he 21.7 34 0.0012 25.1 1.4 29 86-114 184-214 (222)
63 2ojl_A Hypothetical protein; B 21.4 74 0.0025 23.8 3.2 38 108-150 9-46 (108)
64 3mgj_A Uncharacterized protein 21.1 2.8E+02 0.0095 21.1 8.0 59 87-152 19-86 (118)
65 3fkf_A Thiol-disulfide oxidore 21.0 55 0.0019 22.3 2.3 40 96-140 20-62 (148)
66 2cvb_A Probable thiol-disulfid 20.8 55 0.0019 23.9 2.4 43 96-143 22-65 (188)
67 1t82_A Hypothetical acetyltran 20.5 1.5E+02 0.005 22.1 4.8 39 75-115 11-49 (155)
68 2ggt_A SCO1 protein homolog, m 20.4 65 0.0022 22.5 2.6 34 96-129 12-47 (164)
No 1
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=99.96 E-value=2.4e-30 Score=208.38 Aligned_cols=107 Identities=45% Similarity=0.642 Sum_probs=99.3
Q ss_pred hhchHHHHHHHHHhhcchhhhCCCcEEEEEeeCCEEEEEEcccCCCCcchHHHHHHHHHHHHHHHccccccceeeccccc
Q 030084 75 FDLTAKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEE 154 (183)
Q Consensus 75 ~el~~e~Ve~vLe~IRP~LqsdGGDVELVdVedg~V~VrL~GACsGCpsS~~TLk~~IE~~Lre~~P~eV~~V~~V~d~e 154 (183)
++++.++|+.+|++|||+|++|||||+|++|++++|+|||+|+|+|||+|.+||+++||++|++++| +++.|+.+.+++
T Consensus 2 ~~~~~e~v~~~L~~iRP~l~~dGGdvelv~v~~~~V~v~l~GaC~gC~ss~~Tlk~~Ie~~L~~~vp-ev~~V~~v~~~~ 80 (154)
T 2z51_A 2 VPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIP-EIVAVEALPDEE 80 (154)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHTTEEEEEEEEETTEEEEEEEHHHHTCHHHHHHHHHHHHHHHHHHCT-TCCEEEECCSSC
T ss_pred CcchHHHHHHHHHHhChHHHhcCCeEEEEEEECCEEEEEEECCCCCCCccHhHHHHHHHHHHHHhCC-CceEEEEccCch
Confidence 3567889999999999999999999999999999999999999999999999999999999999998 699999998876
Q ss_pred c-ccccHHHHHHHHHHhhhhhhc-cCCccc
Q 030084 155 V-RETTVEVSALLLCLISDKRYY-YTTAVP 182 (183)
Q Consensus 155 ~-~e~s~E~In~al~~Lr~a~~~-~~~~~~ 182 (183)
. .+++.|.|+++|+.+||++.. .||.|-
T Consensus 81 e~l~L~~~~v~~~L~~iRP~L~~~dGGdve 110 (154)
T 2z51_A 81 TGLELNEENIEKVLEEIRPYLIGTADGSLD 110 (154)
T ss_dssp CSCCSSHHHHHHHHHHHGGGCCGGGCCEEE
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhcCCCCeE
Confidence 5 378999999999999999997 898763
No 2
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=99.95 E-value=6.8e-28 Score=179.06 Aligned_cols=76 Identities=46% Similarity=0.852 Sum_probs=71.6
Q ss_pred chHHHHHHHHHhhcchhhhCCCcEEEEEeeCCEEEEEEcccCCCCcchHHHHHHHHHHHHHHHccccccceeecccc
Q 030084 77 LTAKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDE 153 (183)
Q Consensus 77 l~~e~Ve~vLe~IRP~LqsdGGDVELVdVedg~V~VrL~GACsGCpsS~~TLk~~IE~~Lre~~P~eV~~V~~V~d~ 153 (183)
.+.++|+.+|++|||+|++|||||+|++|++|+|+|||+|||+|||||++||+++||++|++++| +|+.|++++++
T Consensus 7 ~~~~~I~~~L~~IRP~L~~dGGdvelv~v~~g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vP-ev~~V~~v~~~ 82 (88)
T 1xhj_A 7 TMFDQVAEVIERLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVP-GVIEVEQVFLE 82 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHST-TCCEEEEEECC
T ss_pred HHHHHHHHHHHHhcHHHHhcCCeEEEEEEECCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCC-CceEEEecccc
Confidence 44677999998899999999999999999999999999999999999999999999999999997 79999999765
No 3
>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1
Probab=99.93 E-value=1.4e-26 Score=173.11 Aligned_cols=78 Identities=33% Similarity=0.588 Sum_probs=72.5
Q ss_pred chHHHHHHHHH-hhcchhhhCCCcEEEEEeeCCEEEEEEcccCCCCcchHHHHHHHHHHHHHHHccccccceeecccccc
Q 030084 77 LTAKNVDLVLE-DVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEV 155 (183)
Q Consensus 77 l~~e~Ve~vLe-~IRP~LqsdGGDVELVdVedg~V~VrL~GACsGCpsS~~TLk~~IE~~Lre~~P~eV~~V~~V~d~e~ 155 (183)
.+.++|+.+|+ +|||+|++|||||+|++|++|+|+|||+|||+|||||.+||+++||++|++++| +++.|++|.+++.
T Consensus 13 ~~~~~I~~~L~~~IRP~L~~dGGdvelv~v~~g~V~v~l~GaC~gC~ss~~Tlk~gIE~~L~~~vp-ev~~V~~v~~~~~ 91 (92)
T 1veh_A 13 EVVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIP-EVEGVEQVSGPSS 91 (92)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHSCCCCEEEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCS-SCCCEEECSCSCC
T ss_pred HHHHHHHHHHHHHhhHHHHhcCCeEEEEEEeCCEEEEEEeecCCCCCCcHHHHHHHHHHHHHHHCC-CCCEEEEcCCCCC
Confidence 44677999996 699999999999999999999999999999999999999999999999999998 6999999987753
No 4
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=99.89 E-value=4.4e-24 Score=154.07 Aligned_cols=71 Identities=28% Similarity=0.619 Sum_probs=66.7
Q ss_pred hhchHHHHHHHHHhhcchhhhCC-CcEEEEEeeCCEEEEEEcccCCCCcchHHHHHHHHHHHHHHHccccccceeec
Q 030084 75 FDLTAKNVDLVLEDVRPYLIADG-GNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQV 150 (183)
Q Consensus 75 ~el~~e~Ve~vLe~IRP~LqsdG-GDVELVdVedg~V~VrL~GACsGCpsS~~TLk~~IE~~Lre~~P~eV~~V~~V 150 (183)
++++.++|+.+|++|||+|++|| ||++|++|++|+|+|||+|||+|| +||+++||++|++++| +++.|+.|
T Consensus 2 ~~~~~~~V~~~L~~iRP~L~~dGGGdvelv~v~~g~V~v~l~GaC~gc----~Tlk~gIe~~L~~~vp-ei~~V~~v 73 (74)
T 1th5_A 2 LELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVV----RTVRIAVSKKLREKIP-SIQIVQLL 73 (74)
T ss_dssp CCCSHHHHHHHHTTTHHHHTTTTCCCCCCCEEETTEEEECCCSSSSSS----SSHHHHHHHHHHHHCT-TCSEEEEC
T ss_pred hhHHHHHHHHHHHHHhHHHHhcCCCcEEEEEEeCCEEEEEEecCCcch----HHHHHHHHHHHHHHCC-CCcEEEeC
Confidence 46778999999999999999999 999999999999999999999999 6999999999999998 59999876
No 5
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=99.82 E-value=1.4e-20 Score=151.42 Aligned_cols=72 Identities=31% Similarity=0.683 Sum_probs=66.6
Q ss_pred chhchHHHHHHHHHhhcchhhh-CCCcEEEEEeeCCEEEEEEcccCCCCcchHHHHHHHHHHHHHHHccccccceeec
Q 030084 74 QFDLTAKNVDLVLEDVRPYLIA-DGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQV 150 (183)
Q Consensus 74 ~~el~~e~Ve~vLe~IRP~Lqs-dGGDVELVdVedg~V~VrL~GACsGCpsS~~TLk~~IE~~Lre~~P~eV~~V~~V 150 (183)
.++++.++|+.+|++|||+|++ ||||+||++|++++|+|||+|+|+|| +|++.+||++|++++| +|++|+++
T Consensus 82 ~l~L~~~~v~~~L~~iRP~L~~~dGGdvelv~v~~~~v~v~l~Gac~~~----~Tlk~~Ie~~l~e~vP-~i~~V~~~ 154 (154)
T 2z51_A 82 GLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVKIRITGPAAGV----MTVRVAVTQKLREKIP-SIAAVQLI 154 (154)
T ss_dssp SCCSSHHHHHHHHHHHGGGCCGGGCCEEEEEEEETTEEEEEEESGGGGC----HHHHHHHHHHHHHHCT-TCCEEEEC
T ss_pred hhHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEEECCEEEEEEecCCccc----HhHHHHHHHHHHHHCC-CccEEEeC
Confidence 3567889999999999999997 99999999999999999999999998 7999999999999998 69988764
No 6
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=97.05 E-value=0.0016 Score=47.62 Aligned_cols=67 Identities=19% Similarity=0.250 Sum_probs=55.9
Q ss_pred hHHHHHHHHH-hhcchhhhCC---CcEEEEEeeCCEEEEEEcccCCCCcchHHHHHHHHHHHHHHHccccccce
Q 030084 78 TAKNVDLVLE-DVRPYLIADG---GNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDI 147 (183)
Q Consensus 78 ~~e~Ve~vLe-~IRP~LqsdG---GDVELVdVedg~V~VrL~GACsGCpsS~~TLk~~IE~~Lre~~P~eV~~V 147 (183)
+.+.|..+|. -+.|.+..+- |-|.=++++++.|+|.|...+.+||. ..+++..|+++|++ +| .++.|
T Consensus 7 ~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~~~V~v~l~lt~~~cp~-~~~l~~~i~~al~~-l~-gv~~V 77 (103)
T 3cq1_A 7 LEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRMTLTTPGCPL-HDSLGEAVRQALSR-LP-GVEEV 77 (103)
T ss_dssp HHHHHHHHHTTCBCTTTCSBTTTTTCEEEEEEETTEEEEEECCSSSSCCS-SCHHHHHHHHHHHT-ST-TCCEE
T ss_pred HHHHHHHHHhCCCCCCCCcCchhcCceEEEEEECCEEEEEEEECCCCCcH-HHHHHHHHHHHHHh-CC-CceeE
Confidence 4567888885 4779998887 88888999999999999999999998 66888999999985 66 36665
No 7
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=96.60 E-value=0.0054 Score=44.60 Aligned_cols=68 Identities=21% Similarity=0.271 Sum_probs=54.6
Q ss_pred chHHHHHHHHHhhc-chhhhCC---CcEEEEEeeC-CEEEEEEcccCCCCcchHHHHHHHHHHHHHHHccccccce
Q 030084 77 LTAKNVDLVLEDVR-PYLIADG---GNIDVVSVED-GVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDI 147 (183)
Q Consensus 77 l~~e~Ve~vLe~IR-P~LqsdG---GDVELVdVed-g~V~VrL~GACsGCpsS~~TLk~~IE~~Lre~~P~eV~~V 147 (183)
.+.+.|..+|..|. |.+..+- |-|.=+++++ |.|+|.|.-.+.+||. ...++..|+++|++ +| .++.|
T Consensus 6 ~~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~~~~V~v~l~lt~~~cp~-~~~l~~~i~~al~~-l~-gv~~v 78 (103)
T 1uwd_A 6 VTKEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPL-AGMILSDAEEAIKK-IE-GVNNV 78 (103)
T ss_dssp CCHHHHHHHHTTCBCTTTSSBTTTTTCCCCEEECTTCEEEEEECCSSSCCSS-HHHHHHHHHHHHHT-SS-SCCEE
T ss_pred chHHHHHHHHcCCCCCCCCcChhhcCCeeEEEEcCCCEEEEEEEECCCCCcH-HHHHHHHHHHHHHh-CC-CcceE
Confidence 34677889997666 9887765 6677778875 8999999999999997 67888999999986 65 36665
No 8
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=96.39 E-value=0.0074 Score=44.59 Aligned_cols=88 Identities=15% Similarity=0.195 Sum_probs=62.6
Q ss_pred cchhchHHHHHHHHHh-hcchhhhC---CCcEEEEEeeC-CEEEEEEcccCCCCcchHHHHHHHHHHHHHHHccccccce
Q 030084 73 HQFDLTAKNVDLVLED-VRPYLIAD---GGNIDVVSVED-GVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDI 147 (183)
Q Consensus 73 ~~~el~~e~Ve~vLe~-IRP~Lqsd---GGDVELVdVed-g~V~VrL~GACsGCpsS~~TLk~~IE~~Lre~~P~eV~~V 147 (183)
..-+.+.+.|..+|.. +-|.+..+ -|-|.=+.+++ |.|+|.|.-...+||.. ..++..|+++|+..+| .++.|
T Consensus 4 ~~~~~~~~~V~~aL~~V~DPe~~~~Iv~lG~V~~I~v~~~~~V~V~ltlt~p~cp~~-~~i~~~i~~al~~~l~-Gv~~V 81 (108)
T 3lno_A 4 MSQEAFENKLYANLEAVIDPELGVDIVNLGLVYDVTADENNNAVITMTMTSIGCPMA-GQIVSDVKKVLSTNVP-EVNEI 81 (108)
T ss_dssp HHHHHHHHHHHHHGGGCEETTTTEEHHHHTCEEEEEECTTCCEEEEECCSCTTCTTH-HHHHHHHHHHHHHHCT-TCCCE
T ss_pred cchhhhHHHHHHHHcCCCCCCCCCCHHHcCCceEEEECCCCeEEEEEEECCCCCcHH-HHHHHHHHHHHHHhCC-CCceE
Confidence 3445667788888854 47777544 57788888875 89999999999999976 4888999999955577 47776
Q ss_pred ee-cccc---ccccccHHH
Q 030084 148 RQ-VYDE---EVRETTVEV 162 (183)
Q Consensus 148 ~~-V~d~---e~~e~s~E~ 162 (183)
.- ++.+ .++-+|+|.
T Consensus 82 ~V~l~~~p~W~~~~~s~~~ 100 (108)
T 3lno_A 82 EVNVVWNPPWSKERMSRMA 100 (108)
T ss_dssp EEEECCSSCCCGGGSCHHH
T ss_pred EEEEEecCCCChHHCCHHH
Confidence 33 3322 144566554
No 9
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=86.88 E-value=1.2 Score=34.16 Aligned_cols=53 Identities=13% Similarity=0.107 Sum_probs=35.1
Q ss_pred CCCCcchHHHHHHHHHHHHHHHccccccceeeccccc-cccccHHHHHHHHHHhh
Q 030084 118 CGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEE-VRETTVEVSALLLCLIS 171 (183)
Q Consensus 118 CsGCpsS~~TLk~~IE~~Lre~~P~eV~~V~~V~d~e-~~e~s~E~In~al~~Lr 171 (183)
|.+=|||..|. .++|.+|++++|+.--.+.-|+-++ +++++++.-+-+.+|+.
T Consensus 22 CVnaPSSkeTy-EWLqAal~RKyp~~~f~~~YIDI~~~~~~l~d~~~~~ae~I~e 75 (111)
T 1xg8_A 22 CVNAPTSKDIY-DWLQPLLKRKYPNISFKYTYIDITKDNDNLTDHDLQFIERIEQ 75 (111)
T ss_dssp GSSSCCHHHHH-HHHHHHHHHHCTTSCEEEEEEETTTC---CCHHHHHHHHHHHT
T ss_pred ccCCCCchhHH-HHHHHHHhCcCCCCceEEEEEeccCCccchhHHHHHHHHHHhh
Confidence 44558888888 7999999999997656676775554 33445555555555543
No 10
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=84.13 E-value=0.56 Score=33.16 Aligned_cols=26 Identities=15% Similarity=-0.112 Sum_probs=23.0
Q ss_pred cccHHHHHHHHHHhhhhhhccC-Cccc
Q 030084 157 ETTVEVSALLLCLISDKRYYYT-TAVP 182 (183)
Q Consensus 157 e~s~E~In~al~~Lr~a~~~~~-~~~~ 182 (183)
+...|.|+++|+.+||+++..| |.+-
T Consensus 3 ~~~~~~V~~~L~~iRP~L~~dGGGdve 29 (74)
T 1th5_A 3 ELNEENVEKVLNEIRPYLAGTGGGGLQ 29 (74)
T ss_dssp CCSHHHHHHHHTTTHHHHTTTTCCCCC
T ss_pred hHHHHHHHHHHHHHhHHHHhcCCCcEE
Confidence 4678999999999999999999 7664
No 11
>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A
Probab=79.69 E-value=2.8 Score=32.66 Aligned_cols=58 Identities=12% Similarity=0.084 Sum_probs=36.6
Q ss_pred CCEEEEEEcccCCCCcchHHHHHHHHHHHHHHHccccccceeeccccccccccHHHHHHHH
Q 030084 107 DGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEVRETTVEVSALLL 167 (183)
Q Consensus 107 dg~V~VrL~GACsGCpsS~~TLk~~IE~~Lre~~P~eV~~V~~V~d~e~~e~s~E~In~al 167 (183)
++.|.|.|+=.=.|||+++. +...|+.+|.+.+|...+-...+... +-.+++.||+=|
T Consensus 49 ~~~V~V~~TPT~p~Cp~a~~-I~l~Ir~kL~~~lp~~~kV~v~I~pg--tH~~e~~vnKQl 106 (130)
T 3ux2_A 49 EYLVIIRFTPTVPHCSLATL-IGLCLRVKLQRCLPFKHKLEIYISEG--THSTEEDINKQI 106 (130)
T ss_dssp EEEEEECCCCCCCSSCHHHH-HHHHHHHHHHHHCSSCCCCCCCCCCC--------CHHHHH
T ss_pred CCeEEEEEEeCCCCCCchHH-HHHHHHHHHHHhCCCceEEEEEECCC--CCcCHHHHHHhh
Confidence 46799999999999999865 45799999999888644333333322 344555555443
No 12
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=52.14 E-value=6.2 Score=28.60 Aligned_cols=25 Identities=8% Similarity=-0.122 Sum_probs=21.8
Q ss_pred ccHHHHHHHHHHhhhhhhccCCccc
Q 030084 158 TTVEVSALLLCLISDKRYYYTTAVP 182 (183)
Q Consensus 158 ~s~E~In~al~~Lr~a~~~~~~~~~ 182 (183)
-..+.|+++|+.+||++..-||.|-
T Consensus 7 ~~~~~I~~~L~~IRP~L~~dGGdve 31 (88)
T 1xhj_A 7 TMFDQVAEVIERLRPFLLRDGGDCT 31 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCEEE
T ss_pred HHHHHHHHHHHHhcHHHHhcCCeEE
Confidence 3478899999999999999999863
No 13
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=46.52 E-value=11 Score=25.10 Aligned_cols=68 Identities=16% Similarity=0.150 Sum_probs=32.0
Q ss_pred CCCcEEEEEeeCCEEEEEEcccCCCCcchHHHHHHHHHHHHHHHccccccceeeccccccccccHHHHHHHH
Q 030084 96 DGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEVRETTVEVSALLL 167 (183)
Q Consensus 96 dGGDVELVdVedg~V~VrL~GACsGCpsS~~TLk~~IE~~Lre~~P~eV~~V~~V~d~e~~e~s~E~In~al 167 (183)
+|..+.+-++.+..+.|-|.+ ..||.-...+ ..+++..++ .++.+.-|....+..+...+.+.+...+
T Consensus 11 ~g~~~~l~~~~gk~~lv~f~~--~~C~~C~~~~-~~l~~~~~~-~~~~~~~v~i~~~~~~~~~~~~~~~~~~ 78 (138)
T 4evm_A 11 DGKTYRLSDYKGKKVYLKFWA--SWCSICLASL-PDTDEIAKE-AGDDYVVLTVVSPGHKGEQSEADFKNWY 78 (138)
T ss_dssp TSCEEEGGGGTTSEEEEEECC--TTCHHHHHHH-HHHHHHHHT-CTTTEEEEEEECTTSTTCCCHHHHHHHH
T ss_pred CCCEEEHHHhCCCEEEEEEEc--CcCHHHHHHH-HHHHHHHHH-hCCCcEEEEEEcCCCCchhhHHHHHHHH
Confidence 455566666666677776763 3444433333 334444444 6644443332222223344555544443
No 14
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=42.96 E-value=31 Score=21.71 Aligned_cols=29 Identities=24% Similarity=0.540 Sum_probs=18.0
Q ss_pred EEEEEEcc-cCCCCcchHHHHHHHHHHHHHHHccccccce
Q 030084 109 VVSVKLQG-ACGSCPSSTTTMSMGIERVLKEKFGDAIKDI 147 (183)
Q Consensus 109 ~V~VrL~G-ACsGCpsS~~TLk~~IE~~Lre~~P~eV~~V 147 (183)
.+.+++.| .|.+|. ..|++.|++ + .|..+
T Consensus 6 ~~~~~v~gm~C~~C~-------~~ie~~l~~--~-gv~~~ 35 (73)
T 3fry_A 6 KIVLELSGLSCHHCV-------ARVKKALEE--A-GAKVE 35 (73)
T ss_dssp EEEEEEESSBCGGGH-------HHHHHHHHH--T-TCEEE
T ss_pred EEEEEECCCCCHHHH-------HHHHHHhcc--C-CcEEE
Confidence 35667777 577774 456677777 4 25544
No 15
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=40.39 E-value=30 Score=23.66 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=20.5
Q ss_pred CCcEEEEEeeCCEEEEEEc-ccCCCCcchHHHHH
Q 030084 97 GGNIDVVSVEDGVVSVKLQ-GACGSCPSSTTTMS 129 (183)
Q Consensus 97 GGDVELVdVedg~V~VrL~-GACsGCpsS~~TLk 129 (183)
|..+.+-++.+..+.|-|. .-|..|......+.
T Consensus 21 g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~ 54 (148)
T 3hcz_A 21 GTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLY 54 (148)
T ss_dssp SCBCCGGGCCCSEEEEEEECGGGCTTCSHHHHHH
T ss_pred CCEEEhHHcCCCEEEEEEECCCCccHHHHHHHHH
Confidence 4445544445555555554 45999998877774
No 16
>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PS protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.47.1.23
Probab=40.31 E-value=40 Score=24.97 Aligned_cols=38 Identities=11% Similarity=0.318 Sum_probs=26.8
Q ss_pred CEEEEEEcccCCCCcchHHHHHHHHHHHHHHHccccccceeec
Q 030084 108 GVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQV 150 (183)
Q Consensus 108 g~V~VrL~GACsGCpsS~~TLk~~IE~~Lre~~P~eV~~V~~V 150 (183)
-.|.|.| |.+|...... ..+.+.|...||+++.+|..+
T Consensus 8 ~~V~I~Y---C~~C~~~~Ra--~~laqeLl~tF~~~l~~V~l~ 45 (105)
T 2fa8_A 8 PRIAIRY---CTQCNWLLRA--GWMAQEILQTFASDIGEVSLI 45 (105)
T ss_dssp CEEEEEE---ETTTTCHHHH--HHHHHHHHHHHGGGCSEEEEE
T ss_pred CEEEEEE---CCCCCCHHHH--HHHHHHHHHHcCcccceEEEE
Confidence 4567777 7777776653 478899999999876666443
No 17
>3hdu_A Putative thioesterase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 2.50A {Syntrophus aciditrophicus SB}
Probab=39.86 E-value=1.1e+02 Score=22.51 Aligned_cols=60 Identities=12% Similarity=0.073 Sum_probs=41.7
Q ss_pred HHHHHHHHHhhcchhhhCCCcEEEEEeeCCEEEEEEcccCCCCcc-hHHHHHHHHHHHHHHHc
Q 030084 79 AKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPS-STTTMSMGIERVLKEKF 140 (183)
Q Consensus 79 ~e~Ve~vLe~IRP~LqsdGGDVELVdVedg~V~VrL~GACsGCps-S~~TLk~~IE~~Lre~~ 140 (183)
.+.++..+.+--|+.+.-| ++++++++|.+.++|.-.=..|.- ...++..++-..|.+..
T Consensus 13 ~~~l~~~~~~~~p~~~~lG--~~~~~~~~g~~~~~~~~~~~~~~Np~~G~~HGG~iatl~D~a 73 (157)
T 3hdu_A 13 FSAVNEIFEEKIPFNKIIG--LKVRFISPEQVKLSFEMRDELIGNAIRRMLYGGVISSAIDMT 73 (157)
T ss_dssp HHHHHHHHHTSCGGGGTEE--EEEEEECSSEEEEEEEESSCCTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCcHHHhcC--CEEEEecCCEEEEEEECCHHHhCCCCCCeEcHHHHHHHHHHH
Confidence 3445555555668887776 888999999999988866566633 35677777776666543
No 18
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=39.81 E-value=24 Score=27.86 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=19.3
Q ss_pred HhhcchhhhCCCcEEEEEeeCC-EEEEEE
Q 030084 87 EDVRPYLIADGGNIDVVSVEDG-VVSVKL 114 (183)
Q Consensus 87 e~IRP~LqsdGGDVELVdVedg-~V~VrL 114 (183)
.-+|-.++.|||.|++-+-.+| ++.|+|
T Consensus 217 ai~~~iv~~hGG~i~v~s~~~G~~f~v~L 245 (247)
T 4fpp_A 217 AYLNALVRAAGGQIAVEIGEDRASIAAWV 245 (247)
T ss_dssp HHHHHHHHHTTCEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHcCCEEEEEEcCCEEEEEEEe
Confidence 4577889999999998654444 344443
No 19
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=39.56 E-value=8.1 Score=26.60 Aligned_cols=57 Identities=9% Similarity=0.163 Sum_probs=25.5
Q ss_pred CCEEEEEEc-ccCCCCcchHHHHHHHHHHHHHHHccccccceeecc-ccccccccHHHHHHHHHH
Q 030084 107 DGVVSVKLQ-GACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVY-DEEVRETTVEVSALLLCL 169 (183)
Q Consensus 107 dg~V~VrL~-GACsGCpsS~~TLk~~IE~~Lre~~P~eV~~V~~V~-d~e~~e~s~E~In~al~~ 169 (183)
+..+.|-|. .-|..|......+ + .+.+.+++.+. |..|. +...+..+.+.+...++.
T Consensus 29 gk~~lv~f~~~~C~~C~~~~~~l----~-~l~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~ 87 (148)
T 2b5x_A 29 EKPTLIHFWSISCHLCKEAMPQV----N-EFRDKYQDQLN-VVAVHMPRSEDDLDPGKIKETAAE 87 (148)
T ss_dssp TSCEEEEEECTTCHHHHHHHHHH----H-HHHHHHTTTSE-EEEEECCCSTTTSSHHHHHHHHHH
T ss_pred CCEEEEEEEcCCCHHHHHHhHHH----H-HHHHHhcCCcE-EEEEEcCCCccccCHHHHHHHHHH
Confidence 333333343 3466665544444 2 34445654433 33332 222333456655555443
No 20
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0
Probab=36.10 E-value=50 Score=24.80 Aligned_cols=37 Identities=14% Similarity=0.294 Sum_probs=27.3
Q ss_pred EEEEEEcccCCCCcchHHHHHHHHHHHHHHHccccccceeec
Q 030084 109 VVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQV 150 (183)
Q Consensus 109 ~V~VrL~GACsGCpsS~~TLk~~IE~~Lre~~P~eV~~V~~V 150 (183)
.|.|.| |..|....... .+.+.|...||+++.+|..+
T Consensus 14 ~V~I~Y---C~~C~w~lRa~--~laqeLl~tF~~~l~eVsL~ 50 (107)
T 3dex_A 14 RVQIEY---CTQCRWLPRAA--WLAQELLTTFETELTELALK 50 (107)
T ss_dssp EEEEEE---ETTTTCHHHHH--HHHHHHHHHSTTTEEEEEEE
T ss_pred EEEEEE---CCCCCChHHHH--HHHHHHHHhcccccceEEEE
Confidence 466776 77777776554 77899999999877666544
No 21
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=33.80 E-value=22 Score=26.28 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=26.0
Q ss_pred CCCcEEEEEeeCCEEEEEEcc-cCCCCcchHHHHHHHHHHHHHHHccc
Q 030084 96 DGGNIDVVSVEDGVVSVKLQG-ACGSCPSSTTTMSMGIERVLKEKFGD 142 (183)
Q Consensus 96 dGGDVELVdVedg~V~VrL~G-ACsGCpsS~~TLk~~IE~~Lre~~P~ 142 (183)
+|..+.+-++.+..|.|-|-+ -|..|+.....|. .|.+++.+
T Consensus 27 ~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~-----~l~~~~~~ 69 (180)
T 3kij_A 27 KGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLK-----ELHKEFGP 69 (180)
T ss_dssp TSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHH-----HHHHHHTT
T ss_pred CCCEecHHHcCCCEEEEEEEecCCCCcHHHHHHHH-----HHHHHhcc
Confidence 566677666667777777753 4777776666653 34444554
No 22
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=32.43 E-value=21 Score=26.13 Aligned_cols=29 Identities=34% Similarity=0.450 Sum_probs=23.0
Q ss_pred EEcccCCCCcchH-HHHHHHHHHHHHHHcc
Q 030084 113 KLQGACGSCPSST-TTMSMGIERVLKEKFG 141 (183)
Q Consensus 113 rL~GACsGCpsS~-~TLk~~IE~~Lre~~P 141 (183)
||+|+|+.|.... ..+-..+|+.+|..-+
T Consensus 58 kLkGaa~~~Ga~~L~~~~~~LE~~~r~~~~ 87 (119)
T 3myf_A 58 KLHGASCYCGVPTTQRLCQEIESALKRQTP 87 (119)
T ss_dssp HHHHHHTTTTCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHcCCC
Confidence 6899999999976 4666788999887543
No 23
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=31.51 E-value=20 Score=26.79 Aligned_cols=43 Identities=23% Similarity=0.471 Sum_probs=30.0
Q ss_pred hCCCcEEEEEeeCCEEEEEEc-ccCC-CCcchHHHHHHHHHHHHHH
Q 030084 95 ADGGNIDVVSVEDGVVSVKLQ-GACG-SCPSSTTTMSMGIERVLKE 138 (183)
Q Consensus 95 sdGGDVELVdVedg~V~VrL~-GACs-GCpsS~~TLk~~IE~~Lre 138 (183)
.+|-.+.+-+++|.+|.|-|. -.|. -||.....|.. +++.+++
T Consensus 20 ~~G~~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~-l~~~~~~ 64 (170)
T 4hde_A 20 QDGKPFGTKDLKGKVWVADFMFTNCQTVCPPMTANMAK-LQKMAKE 64 (170)
T ss_dssp TTSCEEEHHHHTTSCEEEEEECTTCSSSHHHHHHHHHH-HHHHHHH
T ss_pred CCCCEEeHHHhCCCEEEEEEECCCCCCcccHHHHHHHH-HHHhhhc
Confidence 356677777777878888774 5685 58888888853 5556665
No 24
>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1
Probab=31.40 E-value=21 Score=25.96 Aligned_cols=26 Identities=19% Similarity=-0.018 Sum_probs=22.0
Q ss_pred cccHHHHHHHHHH-hhhhhhccCCccc
Q 030084 157 ETTVEVSALLLCL-ISDKRYYYTTAVP 182 (183)
Q Consensus 157 e~s~E~In~al~~-Lr~a~~~~~~~~~ 182 (183)
+-..+.|++.|+. +||++..-||.|-
T Consensus 12 ~~~~~~I~~~L~~~IRP~L~~dGGdve 38 (92)
T 1veh_A 12 DEVVAMIKELLDTRIRPTVQEDGGDVI 38 (92)
T ss_dssp CHHHHHHHHHHHHTTHHHHHHHSCCCC
T ss_pred hHHHHHHHHHHHHHhhHHHHhcCCeEE
Confidence 3457889999995 9999999999874
No 25
>3qst_A Triosephosphate isomerase, putative; TIM barrel; 1.75A {Trichomonas vaginalis} PDB: 3qsr_A
Probab=31.30 E-value=83 Score=26.53 Aligned_cols=52 Identities=12% Similarity=0.103 Sum_probs=32.8
Q ss_pred HHHHHHHHHHccc----cccceeecccc-----ccccccHHHHHHHHHHhhhhhhc-------------cCCcc
Q 030084 130 MGIERVLKEKFGD----AIKDIRQVYDE-----EVRETTVEVSALLLCLISDKRYY-------------YTTAV 181 (183)
Q Consensus 130 ~~IE~~Lre~~P~----eV~~V~~V~d~-----e~~e~s~E~In~al~~Lr~a~~~-------------~~~~~ 181 (183)
..|..+|+..+.. ....++.-... ...-.+.|.+++.-..+|..++. |||||
T Consensus 143 ~vv~~Ql~~~l~~~~~~~~~~~vIAYEPvWAIGTG~~Atpe~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV 216 (255)
T 3qst_A 143 EFVSAQIEKMIPAIPAGKWDDVVIAYEPIWAIGTGKVASTQDAQEMCKVIRDILAAKVGADIANKVRILYGGSV 216 (255)
T ss_dssp HHHHHHHHHHGGGSCTTCGGGEEEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCEEEECSCC
T ss_pred HHHHHHHHHHHccCCHHHhCCEEEEECCHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcChhhcCcccEEEcCCc
Confidence 6888888887642 22333221111 12346788888888888877542 99998
No 26
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=30.69 E-value=39 Score=23.78 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=20.7
Q ss_pred CCCcEEEEEeeCCEEEEEEcc-cCCCCcchHHHH
Q 030084 96 DGGNIDVVSVEDGVVSVKLQG-ACGSCPSSTTTM 128 (183)
Q Consensus 96 dGGDVELVdVedg~V~VrL~G-ACsGCpsS~~TL 128 (183)
+|..+.+-++.+..+.|-|.+ -|..|......+
T Consensus 18 ~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l 51 (152)
T 2lrn_A 18 KGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYL 51 (152)
T ss_dssp SSCEEESGGGTTSEEEEEEECTTCTTHHHHHHHH
T ss_pred CCCEEeHHHcCCCEEEEEEECCCChhHHHHHHHH
Confidence 566666666666677776663 477776555555
No 27
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=30.22 E-value=26 Score=24.40 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=19.9
Q ss_pred CCCcEEEEEeeCCEEEEEEcc-cCCCCcchHHHH
Q 030084 96 DGGNIDVVSVEDGVVSVKLQG-ACGSCPSSTTTM 128 (183)
Q Consensus 96 dGGDVELVdVedg~V~VrL~G-ACsGCpsS~~TL 128 (183)
+|+.+.+-+..+..+.|-|.+ -|..|......+
T Consensus 17 ~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l 50 (152)
T 3gl3_A 17 KTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWM 50 (152)
T ss_dssp SSSEEEGGGGTTSEEEEEEECTTCTHHHHHHHHH
T ss_pred CCCeEeHHHhCCCEEEEEEECCcCHHHHHHHHHH
Confidence 577777766667776666663 355554444444
No 28
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=29.91 E-value=17 Score=25.48 Aligned_cols=43 Identities=9% Similarity=0.045 Sum_probs=22.1
Q ss_pred CCCcEEEEEeeCCEEEEEEcccCCCCcchHHHHHHHHHHHHHHHccc
Q 030084 96 DGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGD 142 (183)
Q Consensus 96 dGGDVELVdVedg~V~VrL~GACsGCpsS~~TLk~~IE~~Lre~~P~ 142 (183)
+|..+.+-++.+..|.|-|-+ ..||.-...+ ..+ ..+.+++++
T Consensus 21 ~g~~~~l~~~~gk~vll~F~a--~wC~~C~~~~-~~l-~~l~~~~~~ 63 (143)
T 4fo5_A 21 NDAKASFHNQLGRYTLLNFWA--AYDAESRARN-VQL-ANEVNKFGP 63 (143)
T ss_dssp ---CCCSCCSSCCEEEEEEEC--TTCHHHHHHH-HHH-HHHHTTSCT
T ss_pred CCCEEEHHHhCCCEEEEEEEc--CcCHHHHHHH-HHH-HHHHHHhCc
Confidence 466777777777777777764 3444433333 222 335555654
No 29
>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A
Probab=28.54 E-value=47 Score=24.65 Aligned_cols=39 Identities=13% Similarity=0.252 Sum_probs=27.0
Q ss_pred CCEEEEEEcccCCCCcchHHHHHHHHHHHHHHHccccccceeec
Q 030084 107 DGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQV 150 (183)
Q Consensus 107 dg~V~VrL~GACsGCpsS~~TLk~~IE~~Lre~~P~eV~~V~~V 150 (183)
...|.|.| |.+|....... .+.+.|...||+++.+|..+
T Consensus 5 ~p~V~I~Y---C~~C~~~~Ra~--~laqeLl~tF~~~l~~v~l~ 43 (104)
T 2oka_A 5 KPEIVITY---CTQCQWLLRAA--WLAQELLSTFADDLGKVCLE 43 (104)
T ss_dssp CCEEEEEE---ETTTTCHHHHH--HHHHHHHHHSTTTCSEEEEE
T ss_pred CCEEEEEE---CCCCCChHHHH--HHHHHHHHHcCcccceEEEE
Confidence 34677777 66666665444 67799999999877766554
No 30
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=28.17 E-value=63 Score=23.69 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=21.1
Q ss_pred CCCcEEEEEeeCCEEEEEEcc-cCCCCcchHHHH
Q 030084 96 DGGNIDVVSVEDGVVSVKLQG-ACGSCPSSTTTM 128 (183)
Q Consensus 96 dGGDVELVdVedg~V~VrL~G-ACsGCpsS~~TL 128 (183)
+|..+.+-++.+..|.|-|-+ -|..|......|
T Consensus 36 ~G~~~~l~~~~gk~vll~F~atwC~~C~~~~~~l 69 (183)
T 2obi_A 36 DGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQL 69 (183)
T ss_dssp TSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHH
T ss_pred CCCEeeHHHcCCCEEEEEEeCCCCCCcHHHHHHH
Confidence 566677666667777776663 477676555555
No 31
>1m5h_A Formylmethanofuran--tetrahydromethanopterin formyltransferase; alpha/beta sandwich; 2.00A {Archaeoglobus fulgidus} SCOP: d.58.33.1 d.58.33.1
Probab=27.38 E-value=26 Score=30.85 Aligned_cols=54 Identities=9% Similarity=0.071 Sum_probs=35.9
Q ss_pred CCCCcchHHHHHHHHHHHHHHHccccccceeeccccccccccHHHHHHHHHH-hhhhh----------hccCCcc
Q 030084 118 CGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEVRETTVEVSALLLCL-ISDKR----------YYYTTAV 181 (183)
Q Consensus 118 CsGCpsS~~TLk~~IE~~Lre~~P~eV~~V~~V~d~e~~e~s~E~In~al~~-Lr~a~----------~~~~~~~ 181 (183)
-..|| ||+..++ ...+|+++..|-.+.- +.+++|.|++|++- ++.+. -||||-+
T Consensus 222 dayCP----TLr~~~~---~S~lp~~v~~V~EIVI---dGl~~~aV~~AmraGi~Aa~~~~Gv~~IsAGNYGGkL 286 (297)
T 1m5h_A 222 EKFAP----SIRDQVE---GTQIPAGVKAVYEIVI---NGLNADAIKEATRVGILAATKIPGVVKITAGNYGGKL 286 (297)
T ss_dssp GGGCG----GGHHHHS---SCCCCTTCCEEEEEEE---EESSHHHHHHHHHHHHHHHTTSTTEEEEECCCCTTTS
T ss_pred cccCc----chhcccc---cccCCccCCeEEEEEE---cCCCHHHHHHHHHHHHHHHhccCCeEEEecCCcCCcC
Confidence 44576 6776543 3568888888844332 47999999999964 33332 4888854
No 32
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=27.08 E-value=48 Score=25.11 Aligned_cols=49 Identities=14% Similarity=0.354 Sum_probs=28.4
Q ss_pred CCCcEEEEEeeCCEEEEEEc-ccCCC-CcchHHHHHHHHHHHHHHHcccccc
Q 030084 96 DGGNIDVVSVEDGVVSVKLQ-GACGS-CPSSTTTMSMGIERVLKEKFGDAIK 145 (183)
Q Consensus 96 dGGDVELVdVedg~V~VrL~-GACsG-CpsS~~TLk~~IE~~Lre~~P~eV~ 145 (183)
+|..+.+-++.+..+.|-|- ..|.. |+.....|.. +.+.+.+..++.+.
T Consensus 30 ~G~~v~l~~~~Gk~vlv~F~at~C~~vC~~~~~~l~~-l~~~~~~~~~~~v~ 80 (200)
T 2b7k_A 30 YGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGL-WLNTLSSKYGITLQ 80 (200)
T ss_dssp TSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHH-HHHHHHHHHCCCCE
T ss_pred CCCEEeHHHcCCCEEEEEEECCCCcchhHHHHHHHHH-HHHHHHHhhCCceE
Confidence 45566666666666666555 46876 8777777743 44445554333343
No 33
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=26.85 E-value=54 Score=22.71 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=20.2
Q ss_pred HHhhcchhhhCCCcEEEEEeeCCEEEEEE
Q 030084 86 LEDVRPYLIADGGNIDVVSVEDGVVSVKL 114 (183)
Q Consensus 86 Le~IRP~LqsdGGDVELVdVedg~V~VrL 114 (183)
|.-++-.++.|||.+.+-.-.++ ..+++
T Consensus 127 L~i~~~~~~~~gG~l~i~s~~~~-~~~~i 154 (160)
T 1r62_A 127 LSIARNLIDQHSGKIEFTSWPGH-TEFSV 154 (160)
T ss_dssp HHHHHHHHHHTTCEEEEEEETTE-EEEEE
T ss_pred HHHHHHHHHHCCCeEEEEeCCCC-EEEEE
Confidence 35677778899999998776665 44443
No 34
>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae}
Probab=26.60 E-value=51 Score=24.51 Aligned_cols=37 Identities=14% Similarity=0.282 Sum_probs=25.4
Q ss_pred EEEEEEcccCCCCcchHHHHHHHHHHHHHHHccccccceeec
Q 030084 109 VVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQV 150 (183)
Q Consensus 109 ~V~VrL~GACsGCpsS~~TLk~~IE~~Lre~~P~eV~~V~~V 150 (183)
.|.|.| |.+|....... .+.+.|...||+++.+|..+
T Consensus 5 ~V~I~Y---C~~C~w~~Ra~--~laqeLl~tF~~~l~~v~l~ 41 (105)
T 2p0g_A 5 QIEIYY---CRQCNWMLRSA--WLSQELLHTFSEEIEYVALH 41 (105)
T ss_dssp EEEEEE---ETTTTCHHHHH--HHHHHHHHHTTTTEEEEEEE
T ss_pred EEEEEE---CCCCCChHHHH--HHHHHHHHHcCcccceEEEE
Confidence 355555 67776666544 67789999999877666544
No 35
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=26.59 E-value=36 Score=24.77 Aligned_cols=27 Identities=19% Similarity=0.005 Sum_probs=24.5
Q ss_pred cccccHHHHHHHHHHhhhhhhccCCcc
Q 030084 155 VRETTVEVSALLLCLISDKRYYYTTAV 181 (183)
Q Consensus 155 ~~e~s~E~In~al~~Lr~a~~~~~~~~ 181 (183)
..++++|.++...+.++..|...||.|
T Consensus 53 ~P~l~ee~~~~~ve~~~~iI~~~gG~i 79 (96)
T 2kjw_A 53 NPNLDQSQLALEKEIIQRALENYGARV 79 (96)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 457899999999999999999999976
No 36
>3r3t_A 30S ribosomal protein S6; structural genomics, center for structural genomics of infec diseases, csgid, beta-barrel, cytosol; 2.30A {Bacillus anthracis}
Probab=26.03 E-value=47 Score=23.72 Aligned_cols=26 Identities=8% Similarity=-0.056 Sum_probs=23.6
Q ss_pred ccccHHHHHHHHHHhhhhhhccCCcc
Q 030084 156 RETTVEVSALLLCLISDKRYYYTTAV 181 (183)
Q Consensus 156 ~e~s~E~In~al~~Lr~a~~~~~~~~ 181 (183)
..+++|.++..++.+...|.+.||.|
T Consensus 15 p~~~~e~~~~~~~~~~~~i~~~gg~i 40 (99)
T 3r3t_A 15 PGVEEEAQKALVERFAGVLTNNGAEI 40 (99)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCEE
Confidence 46889999999999999999999976
No 37
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=25.94 E-value=87 Score=22.00 Aligned_cols=33 Identities=12% Similarity=0.277 Sum_probs=20.7
Q ss_pred CCCcEEEEEeeCCEEEEEEcc-cCCCCcchHHHH
Q 030084 96 DGGNIDVVSVEDGVVSVKLQG-ACGSCPSSTTTM 128 (183)
Q Consensus 96 dGGDVELVdVedg~V~VrL~G-ACsGCpsS~~TL 128 (183)
+|..+.+-++.+..+.|-|-. -|..|......|
T Consensus 20 ~G~~~~l~~~~gk~vlv~f~a~~C~~C~~~~~~l 53 (169)
T 2v1m_A 20 NGVDVSLEKYRGHVCLIVNVACKCGATDKNYRQL 53 (169)
T ss_dssp TSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHH
T ss_pred CCCCccHHHcCCCEEEEEEeeccCCchHHHHHHH
Confidence 566666666667777776653 466666555555
No 38
>1t3y_A Coactosin-like protein; beta sheet, protein binding; 1.15A {Homo sapiens} SCOP: d.109.1.2 PDB: 1t2l_A 1t3x_A 1vfq_A 1tmw_A 1wnj_A 1udm_A 1wm4_A
Probab=25.82 E-value=66 Score=24.07 Aligned_cols=64 Identities=9% Similarity=0.071 Sum_probs=34.9
Q ss_pred EEEEEEcccCCCCcchHHHHHHHHHHHHHHHccccccceeeccccccccccHHHHHHHHHHhhhhhhccCC
Q 030084 109 VVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEVRETTVEVSALLLCLISDKRYYYTT 179 (183)
Q Consensus 109 ~V~VrL~GACsGCpsS~~TLk~~IE~~Lre~~P~eV~~V~~V~d~e~~e~s~E~In~al~~Lr~a~~~~~~ 179 (183)
.|.|...|- +||.-.-.+...=...|++.+.. +. ..+...+.++++.|.|..-++....| +|++
T Consensus 75 ~vfI~W~pd--~~~~~~K~~~as~k~~vk~~l~g-~~--~~i~a~d~~el~~~~I~~kv~~a~Ga--~y~~ 138 (141)
T 1t3y_A 75 FALITWIGE--NVSGLQRAKTGTDKTLVKEVVQN-FA--KEFVISDRKELEEDFIKSELKKAGGA--NYDA 138 (141)
T ss_dssp EEEEEEECT--TSCHHHHHHHHHHHHHHTTTSCC-CS--EEEEECSGGGGSHHHHHHHHHHC---------
T ss_pred EEEEEECCC--CCCHHHhhhHHHHHHHHHHHhcc-cE--EEEEeCChHHCCHHHHHHHHHhccCC--CCCC
Confidence 566666663 55554444444445666666543 33 23444556899999998877766655 5554
No 39
>4g1k_A Triosephosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel, TPIA; 2.35A {Burkholderia thailandensis}
Probab=25.76 E-value=34 Score=29.35 Aligned_cols=52 Identities=13% Similarity=0.167 Sum_probs=34.9
Q ss_pred HHHHHHHHHHccccc-----cceeecccc-----ccccccHHHHHHHHHHhhhhhhc---------cCCccc
Q 030084 130 MGIERVLKEKFGDAI-----KDIRQVYDE-----EVRETTVEVSALLLCLISDKRYY---------YTTAVP 182 (183)
Q Consensus 130 ~~IE~~Lre~~P~eV-----~~V~~V~d~-----e~~e~s~E~In~al~~Lr~a~~~---------~~~~~~ 182 (183)
..|..+|+..+.. + ..|+.-... .-.-.|.|.+++.-..||..++. |||||-
T Consensus 166 ~vv~~Ql~~~l~~-~~~~~~~~vVIAYEPVWAIGTG~tAt~e~aqevh~~IR~~l~~~~a~~~rIlYGGSV~ 236 (272)
T 4g1k_A 166 QVVGAQLDAVLAV-LSPDEAARIVVAYEPVWAIGTGKSATAEQAQQVHAFLRGRLAAKGAGHVSLLYGGSVK 236 (272)
T ss_dssp HHHHHHHHHHHTT-SCHHHHTTCEEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHTCTTSCEEECSCCC
T ss_pred HHHHHHHHHHHhC-CCHHHcCCEEEEECcHhhccCCCCCCHHHHHHHHHHHHHHHHHhhcCCceEEEcCCcC
Confidence 6888888887652 3 233322111 23356899999999999988753 999983
No 40
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=25.25 E-value=52 Score=22.85 Aligned_cols=28 Identities=18% Similarity=0.016 Sum_probs=19.1
Q ss_pred HhhcchhhhCCCcEEEEEeeC-C-EEEEEE
Q 030084 87 EDVRPYLIADGGNIDVVSVED-G-VVSVKL 114 (183)
Q Consensus 87 e~IRP~LqsdGGDVELVdVed-g-~V~VrL 114 (183)
.-++-.++.|||++++..-.+ | .++|+|
T Consensus 113 ~i~~~~~~~~gG~i~~~~~~~~G~~~~i~l 142 (152)
T 1id0_A 113 AVAREITEQYEGKIVAGESMLGGARMEVIF 142 (152)
T ss_dssp HHHHHHHHHTTCEEEEEECTTSSEEEEEEE
T ss_pred HHHHHHHHHcCCEEEEEeCCCCcEEEEEEE
Confidence 345556778999999987753 3 455555
No 41
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=24.64 E-value=31 Score=24.27 Aligned_cols=42 Identities=19% Similarity=0.355 Sum_probs=23.4
Q ss_pred CCCcEEEEEeeCCEEEEEEcc-cCCCCcchHHHHHHHHHHHHHHHccc
Q 030084 96 DGGNIDVVSVEDGVVSVKLQG-ACGSCPSSTTTMSMGIERVLKEKFGD 142 (183)
Q Consensus 96 dGGDVELVdVedg~V~VrL~G-ACsGCpsS~~TLk~~IE~~Lre~~P~ 142 (183)
+|..+.+-++.+..+.|-|.+ -|..|......| ..+.+.+++
T Consensus 23 ~g~~~~l~~~~gk~vlv~f~~~~C~~C~~~~~~l-----~~l~~~~~~ 65 (165)
T 3or5_A 23 DGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDM-----VQVQKTWAS 65 (165)
T ss_dssp TSCEEEGGGGTTCEEEEEEECTTSHHHHHHHHHH-----HHHHHHHTT
T ss_pred CCCEechhHcCCCEEEEEEEcCcCHHHHHHHHHH-----HHHHHHhcc
Confidence 466666666666666666663 355555444444 334445654
No 42
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10
Probab=24.58 E-value=83 Score=23.41 Aligned_cols=32 Identities=9% Similarity=0.113 Sum_probs=24.1
Q ss_pred cEEEEEe-eCCEEEEEEc-c-cCCCCcchHHHHHH
Q 030084 99 NIDVVSV-EDGVVSVKLQ-G-ACGSCPSSTTTMSM 130 (183)
Q Consensus 99 DVELVdV-edg~V~VrL~-G-ACsGCpsS~~TLk~ 130 (183)
.+.+-++ .+..+.|-|- + -|..|......|..
T Consensus 24 ~v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~ 58 (198)
T 1zof_A 24 HFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDK 58 (198)
T ss_dssp EEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHH
T ss_pred eEEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHH
Confidence 5777777 7778888887 4 59999988877743
No 43
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10
Probab=24.31 E-value=28 Score=27.16 Aligned_cols=34 Identities=12% Similarity=0.106 Sum_probs=22.2
Q ss_pred CCCcEEEEEeeCCEEEEEEc-c-cCCCCcchHHHHH
Q 030084 96 DGGNIDVVSVEDGVVSVKLQ-G-ACGSCPSSTTTMS 129 (183)
Q Consensus 96 dGGDVELVdVedg~V~VrL~-G-ACsGCpsS~~TLk 129 (183)
+|+.+.+-++.+..+.|-|- + -|..|......|.
T Consensus 45 ~g~~v~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~ 80 (220)
T 1zye_A 45 EFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFS 80 (220)
T ss_dssp SEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHH
T ss_pred CCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHH
Confidence 45566666666777777776 3 4777776655553
No 44
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=24.30 E-value=40 Score=23.44 Aligned_cols=25 Identities=8% Similarity=-0.160 Sum_probs=22.7
Q ss_pred cccccHHHHHHHHHHhhhhhhccCC
Q 030084 155 VRETTVEVSALLLCLISDKRYYYTT 179 (183)
Q Consensus 155 ~~e~s~E~In~al~~Lr~a~~~~~~ 179 (183)
...+++|.++...+.++..|.+.||
T Consensus 53 ~P~l~ee~~~~~vek~~~~i~~~Gg 77 (77)
T 3zzp_A 53 NPNLDQSQLQNEKEIIQRALENYGA 77 (77)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 3578999999999999999999987
No 45
>1ew4_A CYAY protein; friedreich ataxia, frataxin family, iron homeostasis, unknown function; 1.40A {Escherichia coli} SCOP: d.82.2.1 PDB: 2eff_A 2p1x_A 1soy_A
Probab=24.02 E-value=1.1e+02 Score=22.39 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=20.4
Q ss_pred HHHHHHHhhcchhhh--CCCcEEEEEeeCCEEEEEEc
Q 030084 81 NVDLVLEDVRPYLIA--DGGNIDVVSVEDGVVSVKLQ 115 (183)
Q Consensus 81 ~Ve~vLe~IRP~Lqs--dGGDVELVdVedg~V~VrL~ 115 (183)
.++..|+.|.-.|.. .+.|++ ++..+|+++|.|.
T Consensus 9 lad~~l~~ie~~le~~~~~~d~D-~e~~~gVLti~f~ 44 (106)
T 1ew4_A 9 LADQLWLTIEERLDDWDGDSDID-CEINGGVLTITFE 44 (106)
T ss_dssp HHHHHHHHHHHHHHTCCSSSCCE-EEEETTEEEEECT
T ss_pred HHHHHHHHHHHHHHhhccCCCEe-eeccCCEEEEEEC
Confidence 345555555555555 455654 3345888888884
No 46
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Probab=24.00 E-value=48 Score=24.69 Aligned_cols=34 Identities=15% Similarity=0.193 Sum_probs=21.1
Q ss_pred CCCcEEEEEeeCCEEEEEEc-ccCCCCcchHHHHH
Q 030084 96 DGGNIDVVSVEDGVVSVKLQ-GACGSCPSSTTTMS 129 (183)
Q Consensus 96 dGGDVELVdVedg~V~VrL~-GACsGCpsS~~TLk 129 (183)
+|..+.+-++.+..|.|-|- --|..|+.....|.
T Consensus 35 ~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~ 69 (187)
T 3dwv_A 35 DHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETAT 69 (187)
T ss_dssp TSCBCCGGGGTTSCEEEEEECCBCSCCTTHHHHHH
T ss_pred CCCEeeHHHhCCCEEEEEEecCCCCCcHHHHHHHH
Confidence 34455555555555555554 45999998877774
No 47
>3kxq_A Triosephosphate isomerase; ssgcid, NIH, niaid, SBRI, UW, gluconeogenesis, glycolysis, pentose shunt; 1.60A {Bartonella henselae}
Probab=23.66 E-value=39 Score=29.03 Aligned_cols=53 Identities=21% Similarity=0.192 Sum_probs=32.1
Q ss_pred HHHHHHHHHHccccc--cceeecccc-----ccccccHHHHHHHHHHhhhhhhc------------cCCccc
Q 030084 130 MGIERVLKEKFGDAI--KDIRQVYDE-----EVRETTVEVSALLLCLISDKRYY------------YTTAVP 182 (183)
Q Consensus 130 ~~IE~~Lre~~P~eV--~~V~~V~d~-----e~~e~s~E~In~al~~Lr~a~~~------------~~~~~~ 182 (183)
..|..+|+..++... ..|+.-... .-.-.|.|.+++.-..||..++. |||||-
T Consensus 166 ~vv~~Ql~~~l~~~~~~~~vVIAYEPVWAIGTGktAt~e~aqevh~~IR~~l~~~~~~~a~~~rIlYGGSV~ 237 (275)
T 3kxq_A 166 DVLTRQLEGSLPDGATAENIIIAYEPVWAVGTGNTATSADVAEVHAFIHHKMHSRFGDEGAKIRLLYGGSVK 237 (275)
T ss_dssp HHHHHHHHHHSCTTCCTTTEEEEECCCC--------CHHHHHHHHHHHHHHHHHHHHHHHTTSCEEECSCCC
T ss_pred HHHHHHHHHHHcCCcccCCEEEEECChhhhcCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccceEEEcCCcC
Confidence 688888888775211 223222111 12356889999998888887653 999983
No 48
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=23.63 E-value=49 Score=24.81 Aligned_cols=44 Identities=27% Similarity=0.276 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHccccccce-eecccccccc---ccHHHHHHHHHHhhh
Q 030084 126 TTMSMGIERVLKEKFGDAIKDI-RQVYDEEVRE---TTVEVSALLLCLISD 172 (183)
Q Consensus 126 ~TLk~~IE~~Lre~~P~eV~~V-~~V~d~e~~e---~s~E~In~al~~Lr~ 172 (183)
.|+ .-++.+++..|. +..+ ..-.|+|+++ .|++..++|+++-++
T Consensus 36 ~tw-eel~~mvk~~f~--L~~~~IkY~DEenD~V~i~Sq~E~eEAlkva~k 83 (101)
T 1wj6_A 36 TTW-ADIEAMVKVSFD--LNTIQIKYLDEENEEVSINSQGEYEEALKMAVK 83 (101)
T ss_dssp SCH-HHHHHHHHHHHC--CSSBCCEEECTTSCEECCCSHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHcC--CCceEEEEecCCCCEEEEecHHHHHHHHHHhcc
Confidence 355 578899999887 4444 3345666654 578999999997665
No 49
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=23.57 E-value=86 Score=23.02 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=20.9
Q ss_pred CCCcEEEEEeeCCEEEEEEcc-cCCCCcchHHHH
Q 030084 96 DGGNIDVVSVEDGVVSVKLQG-ACGSCPSSTTTM 128 (183)
Q Consensus 96 dGGDVELVdVedg~V~VrL~G-ACsGCpsS~~TL 128 (183)
+|..+.+-++.+..|.|-|-+ -|..|......|
T Consensus 38 ~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l 71 (181)
T 2p31_A 38 RGKLVSLEKYRGSVSLVVNVASECGFTDQHYRAL 71 (181)
T ss_dssp TSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHH
T ss_pred CCCEecHHHcCCCEEEEEEeccCCCCcHHHHHHH
Confidence 566677666667777776663 466666554444
No 50
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus} SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Probab=23.54 E-value=44 Score=24.12 Aligned_cols=30 Identities=10% Similarity=0.144 Sum_probs=24.4
Q ss_pred chhchHHHHHHHHHhhcchhhhCCCcEEEE
Q 030084 74 QFDLTAKNVDLVLEDVRPYLIADGGNIDVV 103 (183)
Q Consensus 74 ~~el~~e~Ve~vLe~IRP~LqsdGGDVELV 103 (183)
+.+.-++.++.+++.+.-.+..+||..++.
T Consensus 62 D~k~ge~~L~~ai~~i~~~i~~~gG~~~v~ 91 (93)
T 2qn6_B 62 NPKEASEALNQIISNLIKIGKEENVDISVV 91 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 345556778888899999999999998864
No 51
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=23.37 E-value=2e+02 Score=20.19 Aligned_cols=65 Identities=14% Similarity=0.142 Sum_probs=36.3
Q ss_pred HHHhhcchhhhCCCcEEEEEee----CCEEEEEEcccCCCCcc--hHHHHHHHHHHHHHHHccccccce-eec
Q 030084 85 VLEDVRPYLIADGGNIDVVSVE----DGVVSVKLQGACGSCPS--STTTMSMGIERVLKEKFGDAIKDI-RQV 150 (183)
Q Consensus 85 vLe~IRP~LqsdGGDVELVdVe----dg~V~VrL~GACsGCps--S~~TLk~~IE~~Lre~~P~eV~~V-~~V 150 (183)
.+++|+-.|.+..|=..+-++. ++.+.+.+.=...+-.+ ..-.+...||+.|++++|. +..| .++
T Consensus 11 ~~~~I~~~l~~~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~-i~~vtIhv 82 (107)
T 2zzt_A 11 MYDDIFAVLERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDD-IEDVTIHV 82 (107)
T ss_dssp HHHHHHHHHTTCSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTT-CCEEEEEE
T ss_pred HHHHHHHHHHcCCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCC-CcEEEEEE
Confidence 3466666677777766666662 44333333222222111 2235778999999999983 5443 444
No 52
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=23.30 E-value=59 Score=22.49 Aligned_cols=33 Identities=15% Similarity=0.399 Sum_probs=17.7
Q ss_pred CCCcEEEEEeeCCEEEEEEc-ccCCCCcchHHHH
Q 030084 96 DGGNIDVVSVEDGVVSVKLQ-GACGSCPSSTTTM 128 (183)
Q Consensus 96 dGGDVELVdVedg~V~VrL~-GACsGCpsS~~TL 128 (183)
+|..+.+-+..+..+.|-|. --|..|......+
T Consensus 17 ~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l 50 (153)
T 2l5o_A 17 HGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKI 50 (153)
T ss_dssp TSCEEEHHHHTTCEEEEEEECTTCTTHHHHHHHH
T ss_pred CCCCccHHHhCCCEEEEEEECCCCccHHHHHHHH
Confidence 34445544444555555554 3477776555554
No 53
>3ta6_A Triosephosphate isomerase; HET: FLC; 1.41A {Mycobacterium tuberculosis} SCOP: c.1.1.0 PDB: 3tao_A* 3gvg_A
Probab=23.00 E-value=41 Score=28.70 Aligned_cols=52 Identities=12% Similarity=0.099 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHcccccc-----ceeecccc-----ccccccHHHHHHHHHHhhhhhhc-------------cCCcc
Q 030084 129 SMGIERVLKEKFGDAIK-----DIRQVYDE-----EVRETTVEVSALLLCLISDKRYY-------------YTTAV 181 (183)
Q Consensus 129 k~~IE~~Lre~~P~eV~-----~V~~V~d~-----e~~e~s~E~In~al~~Lr~a~~~-------------~~~~~ 181 (183)
...|..+|+..+.. +. .++.-... .-.-.|.|.+++.-..||..++. |||||
T Consensus 145 ~~vv~~Ql~~~l~~-l~~~~~~~vvIAYEPVWAIGTG~tAtpe~aqevh~~IR~~l~~~~~~~~a~~~rIlYGGSV 219 (267)
T 3ta6_A 145 VAHNIEQLRGSLAG-LLAEQIGSVVIAYEPVWAIGTGRVASAADAQEVCAAIRKELASLASPRIADTVRVLYGGSV 219 (267)
T ss_dssp HHHHHHHHHHHTTT-CCHHHHTTCEEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHSCHHHHTTSCEEECSCC
T ss_pred HHHHHHHHHHHHhc-CCHHHhCCEEEEECChhhhcCCcCCCHHHHHHHHHHHHHHHHHhhChhhhccceEEEcCCc
Confidence 36888888887653 32 22221111 12346789898888888877652 99998
No 54
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=22.88 E-value=1e+02 Score=18.57 Aligned_cols=51 Identities=22% Similarity=0.388 Sum_probs=25.4
Q ss_pred EEEEEEcc-cCCCCcchHHHHHHHHHHHHHHHccccccceeecccc------ccccccHHHHHHHHH
Q 030084 109 VVSVKLQG-ACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDE------EVRETTVEVSALLLC 168 (183)
Q Consensus 109 ~V~VrL~G-ACsGCpsS~~TLk~~IE~~Lre~~P~eV~~V~~V~d~------e~~e~s~E~In~al~ 168 (183)
.+.+++.| .|.+|. ..|++.|+. ++. |..+.--... -+..++.+.|..+++
T Consensus 3 ~~~~~v~gm~C~~C~-------~~i~~~l~~-~~g-v~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~ 60 (69)
T 4a4j_A 3 TINLQLEGMDCTSCA-------SSIERAIAK-VPG-VQSCQVNFALEQAVVSYHGETTPQILTDAVE 60 (69)
T ss_dssp EEEEEEESCCSHHHH-------HHHHHHHHT-STT-EEEEEEETTTTEEEEEECTTCCHHHHHHHHH
T ss_pred EEEEEECCeecHHHH-------HHHHHHHhc-CCC-eEEEEEEecCCEEEEEECCCCCHHHHHHHHH
Confidence 45677777 465553 456677776 442 4433211000 024566666665554
No 55
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Probab=22.64 E-value=97 Score=21.75 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=19.8
Q ss_pred CCCcEEEEEeeCCEEEEEEcc-cCCCCcchHHHH
Q 030084 96 DGGNIDVVSVEDGVVSVKLQG-ACGSCPSSTTTM 128 (183)
Q Consensus 96 dGGDVELVdVedg~V~VrL~G-ACsGCpsS~~TL 128 (183)
+|..+.+-++.+..|.|-|-. -|..|......|
T Consensus 21 ~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l 54 (170)
T 2p5q_A 21 KENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEM 54 (170)
T ss_dssp TSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHH
T ss_pred CCCEecHHHhCCCEEEEEEEeccCCccHHHHHHH
Confidence 465666666666666666653 466666554444
No 56
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=22.63 E-value=72 Score=22.01 Aligned_cols=42 Identities=17% Similarity=0.494 Sum_probs=24.2
Q ss_pred CCCcEEEEEeeCCEEEEEEc-ccCCCCcchHHHHHHHHHHHHHHHccc
Q 030084 96 DGGNIDVVSVEDGVVSVKLQ-GACGSCPSSTTTMSMGIERVLKEKFGD 142 (183)
Q Consensus 96 dGGDVELVdVedg~V~VrL~-GACsGCpsS~~TLk~~IE~~Lre~~P~ 142 (183)
+|..+.+-+..+..+.|-|. --|..|......+. .+.+.+++
T Consensus 19 ~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~-----~l~~~~~~ 61 (152)
T 2lja_A 19 NGKTVSLADLKGKYIYIDVWATWCGPCRGELPALK-----ELEEKYAG 61 (152)
T ss_dssp TTEEEESTTTTTSEEEEEECCSSCCGGGGTHHHHH-----HHHHHSTT
T ss_pred CCCEeeHHHcCCCEEEEEEECCcCHhHHHHhHHHH-----HHHHHhcc
Confidence 34445544445556666665 45888877766663 34445653
No 57
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=22.59 E-value=97 Score=21.94 Aligned_cols=42 Identities=29% Similarity=0.519 Sum_probs=26.4
Q ss_pred CCCcEEEEEeeCCEEEEEEc-ccCC-CCcchHHHHHHHHHHHHHH
Q 030084 96 DGGNIDVVSVEDGVVSVKLQ-GACG-SCPSSTTTMSMGIERVLKE 138 (183)
Q Consensus 96 dGGDVELVdVedg~V~VrL~-GACs-GCpsS~~TLk~~IE~~Lre 138 (183)
+|..+.+-++.+..+.|-|- ..|. .|+.....|.. +.+.+.+
T Consensus 22 ~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~-l~~~~~~ 65 (174)
T 1xzo_A 22 DGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTD-LQKKLKA 65 (174)
T ss_dssp TSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHH-HHHHHHH
T ss_pred CCCEEehhhcCCCEEEEEEEcCCCcchhHHHHHHHHH-HHHHhhh
Confidence 45566666665655555554 5698 89998888843 3444544
No 58
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=22.22 E-value=61 Score=24.05 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=17.8
Q ss_pred CCCcEEEEEeeCCEEEEEEc-ccCCCCcchHHHH
Q 030084 96 DGGNIDVVSVEDGVVSVKLQ-GACGSCPSSTTTM 128 (183)
Q Consensus 96 dGGDVELVdVedg~V~VrL~-GACsGCpsS~~TL 128 (183)
+|..+.+-++.+..|.|-|- .-|..|......|
T Consensus 37 ~G~~~~l~~~~Gk~vll~F~atwC~~C~~~~~~l 70 (190)
T 2vup_A 37 DHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETA 70 (190)
T ss_dssp TSSBCCGGGGTTSCEEEEEECSSSTTHHHHHHHH
T ss_pred CCCEEEHHHcCCCEEEEEEecCCCCccHHHHHHH
Confidence 34455555555555555554 3466666555555
No 59
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=22.04 E-value=1.3e+02 Score=18.30 Aligned_cols=24 Identities=25% Similarity=0.667 Sum_probs=15.0
Q ss_pred EEEEEcc-cCCCCcchHHHHHHHHHHHHHHHcc
Q 030084 110 VSVKLQG-ACGSCPSSTTTMSMGIERVLKEKFG 141 (183)
Q Consensus 110 V~VrL~G-ACsGCpsS~~TLk~~IE~~Lre~~P 141 (183)
+.+++.| .|.+|. ..|++.|++ ++
T Consensus 4 ~~~~v~gm~C~~C~-------~~ie~~l~~-~~ 28 (74)
T 3dxs_X 4 IQVGVTGMTCAACS-------NSVEAALMN-VN 28 (74)
T ss_dssp EEEEEECCCSHHHH-------HHHHHHHHT-ST
T ss_pred EEEEECCcCCHHHH-------HHHHHHHhc-CC
Confidence 4566777 566553 456777776 44
No 60
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=21.93 E-value=63 Score=23.53 Aligned_cols=44 Identities=27% Similarity=0.276 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHccccccce-eecccccccc---ccHHHHHHHHHHhhh
Q 030084 126 TTMSMGIERVLKEKFGDAIKDI-RQVYDEEVRE---TTVEVSALLLCLISD 172 (183)
Q Consensus 126 ~TLk~~IE~~Lre~~P~eV~~V-~~V~d~e~~e---~s~E~In~al~~Lr~ 172 (183)
.|+ .-++.+++..|. +..+ ..-.|+++++ .|++..++|+++-++
T Consensus 28 ~tw-eel~~mvk~~f~--L~~~~ikY~DEenD~v~i~Sq~E~eEAlkva~k 75 (87)
T 2bkf_A 28 TTW-ADIEAMVKVSFD--LNTIQIKYLDEENEEVSINSQGEYEEALKMAVK 75 (87)
T ss_dssp CCH-HHHHHHHHHHHT--CSSEEEEEECTTSCEEEECSHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHcC--CCceEEEEEcCCCCEEEEecHHHHHHHHHHhcc
Confidence 455 578899999887 4544 3345666654 578999999987655
No 61
>3dfe_A Putative PII-like signaling protein; YP_323533.1, structur genomics, joint center for structural genomics, JCSG; 2.35A {Anabaena variabilis atcc 29413} SCOP: d.58.5.0
Probab=21.70 E-value=64 Score=23.69 Aligned_cols=27 Identities=11% Similarity=0.215 Sum_probs=23.5
Q ss_pred HHHHHHHHHhh-cchhhhCCCcEEEEEe
Q 030084 79 AKNVDLVLEDV-RPYLIADGGNIDVVSV 105 (183)
Q Consensus 79 ~e~Ve~vLe~I-RP~LqsdGGDVELVdV 105 (183)
.+.++.+++.| +|++..++|-+-+.++
T Consensus 70 de~vd~vv~~I~~~~~t~~~G~ifVsdV 97 (111)
T 3dfe_A 70 REMAEKIADQVAIKFFTDYAGIIYICEA 97 (111)
T ss_dssp HHHHHHHHHHHHHHHTTTSCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEEEEe
Confidence 57899999886 8999999998888888
No 62
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=21.69 E-value=34 Score=25.14 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=20.8
Q ss_pred HHhhcchhhhCCCcEEEEEeeCC--EEEEEE
Q 030084 86 LEDVRPYLIADGGNIDVVSVEDG--VVSVKL 114 (183)
Q Consensus 86 Le~IRP~LqsdGGDVELVdVedg--~V~VrL 114 (183)
|.-++-.++.|||++++.+-.++ +|++.|
T Consensus 184 L~i~~~i~~~~gG~i~i~s~~~~Gt~v~~~~ 214 (222)
T 3jz3_A 184 LSIVQRIAKLHGMNVEFGNAEQGGFEAKVSW 214 (222)
T ss_dssp HHHHHHHHHHTTCEEECCBCTTSSBEEEEEC
T ss_pred HHHHHHHHHHcCCEEEEEcCCCCcEEEEEee
Confidence 45677778899999998887655 444443
No 63
>2ojl_A Hypothetical protein; BPR68, NESG, Q7WAF1, structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium; 2.10A {Bordetella parapertussis}
Probab=21.45 E-value=74 Score=23.85 Aligned_cols=38 Identities=16% Similarity=0.370 Sum_probs=26.5
Q ss_pred CEEEEEEcccCCCCcchHHHHHHHHHHHHHHHccccccceeec
Q 030084 108 GVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQV 150 (183)
Q Consensus 108 g~V~VrL~GACsGCpsS~~TLk~~IE~~Lre~~P~eV~~V~~V 150 (183)
-.|.|.| |.+|....... .+.+.|...|++++.+|..+
T Consensus 9 ~~V~I~Y---C~~C~w~lRa~--~laqeLl~tF~~~l~eV~L~ 46 (108)
T 2ojl_A 9 PRIAIQY---CTQCQWLLRAA--WMAQELLSTFGADLGEVALV 46 (108)
T ss_dssp CEEEEEE---ETTTTCHHHHH--HHHHHHHHHHGGGSSEEEEE
T ss_pred CEEEEEE---CCCCCChHHHH--HHHHHHHHhcCcccceEEEE
Confidence 3566666 66666665544 77899999998777777554
No 64
>3mgj_A Uncharacterized protein MJ1480; saccharop_DH_N domain, NESG, structural genomics, PSI-2, protein structure initiative; 2.70A {Methanocaldococcus jannaschii}
Probab=21.08 E-value=2.8e+02 Score=21.09 Aligned_cols=59 Identities=14% Similarity=0.164 Sum_probs=35.8
Q ss_pred HhhcchhhhCCCcEEEEEeeC-------CEEEEEEcccCCCCcchHHHHHHHHHHHHHH--Hccccccceeeccc
Q 030084 87 EDVRPYLIADGGNIDVVSVED-------GVVSVKLQGACGSCPSSTTTMSMGIERVLKE--KFGDAIKDIRQVYD 152 (183)
Q Consensus 87 e~IRP~LqsdGGDVELVdVed-------g~V~VrL~GACsGCpsS~~TLk~~IE~~Lre--~~P~eV~~V~~V~d 152 (183)
.++=-.+...||+-++.+++= ..+.+++.|. +..+|...+. .|.+ ..+.+..++..+..
T Consensus 19 ~~~LD~I~d~GG~F~I~~f~vG~~k~d~SyA~l~V~a~------d~e~L~~Il~-~L~~lGA~~~~~~da~l~~a 86 (118)
T 3mgj_A 19 PKVFDKILDMGGDYKVLEFEIGKRKTDPSYAKILVIGR------DERHVDEILN-ELRDLGAEIPEIEEVELQPA 86 (118)
T ss_dssp HHHHHHHHHTTCEEEEEEEECCSSTTSCEEEEEEEEES------SHHHHHHHHH-HHHHHHHHCTTEEEEEECCS
T ss_pred HHHHHHHHhcCCCEEEEEEecCCCCCCcceEEEEEecC------CHHHHHHHHH-HHHHcCCcCCCCCCceEEEc
Confidence 444445566799999999962 2577777764 5677754444 4444 22334666655533
No 65
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=20.99 E-value=55 Score=22.29 Aligned_cols=40 Identities=10% Similarity=0.326 Sum_probs=23.0
Q ss_pred CCCcEEEE--EeeCCEEEEEEc-ccCCCCcchHHHHHHHHHHHHHHHc
Q 030084 96 DGGNIDVV--SVEDGVVSVKLQ-GACGSCPSSTTTMSMGIERVLKEKF 140 (183)
Q Consensus 96 dGGDVELV--dVedg~V~VrL~-GACsGCpsS~~TLk~~IE~~Lre~~ 140 (183)
+|..+.+- +..+..+.|-|. .-|..|......+. .+.+++
T Consensus 20 ~g~~~~l~~~~~~gk~vll~F~~~~C~~C~~~~~~l~-----~l~~~~ 62 (148)
T 3fkf_A 20 KGEKLSRSAERFRNRYLLLNFWASWCDPQPEANAELK-----RLNKEY 62 (148)
T ss_dssp TSCEECTTSTTTTTSEEEEEEECGGGCCCHHHHHHHH-----HHHHHT
T ss_pred CCCEEeccccccCCcEEEEEEECCCCHHHHHHhHHHH-----HHHHHh
Confidence 34455554 445555555555 45888877666663 345556
No 66
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=20.78 E-value=55 Score=23.93 Aligned_cols=43 Identities=16% Similarity=0.329 Sum_probs=23.7
Q ss_pred CCCcEEEEEeeCCEEEEEEcc-cCCCCcchHHHHHHHHHHHHHHHcccc
Q 030084 96 DGGNIDVVSVEDGVVSVKLQG-ACGSCPSSTTTMSMGIERVLKEKFGDA 143 (183)
Q Consensus 96 dGGDVELVdVedg~V~VrL~G-ACsGCpsS~~TLk~~IE~~Lre~~P~e 143 (183)
+|..+.+-++.+..+.|-|.. -|..|......| + .|.+++.+.
T Consensus 22 ~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l----~-~l~~~~~~~ 65 (188)
T 2cvb_A 22 RGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGEL----V-ALAERYRGK 65 (188)
T ss_dssp TSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHH----H-HHHHHTTTT
T ss_pred CCCEEeHHHhCCCEEEEEEECCCCccHHHHHHHH----H-HHHHHhhcC
Confidence 466666666666666676663 355554444444 2 345556643
No 67
>1t82_A Hypothetical acetyltransferase; structural genomics, alpha-beta dimeric protein with A fold resembling A hotdog, PSI; 1.70A {Shewanella oneidensis} SCOP: d.38.1.5
Probab=20.46 E-value=1.5e+02 Score=22.06 Aligned_cols=39 Identities=21% Similarity=0.158 Sum_probs=29.2
Q ss_pred hhchHHHHHHHHHhhcchhhhCCCcEEEEEeeCCEEEEEEc
Q 030084 75 FDLTAKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQ 115 (183)
Q Consensus 75 ~el~~e~Ve~vLe~IRP~LqsdGGDVELVdVedg~V~VrL~ 115 (183)
++...+.++.++..--|+.+.- .++++++++|.+.+++.
T Consensus 11 ~~~~~~~l~~~~~~~~P~~~~l--Gi~i~~~~~g~~~~~~~ 49 (155)
T 1t82_A 11 MDELLNRLRQTWHSTIPVSEFM--QIAPLSFTDGELSVSAP 49 (155)
T ss_dssp CHHHHHHHHHHHHHHCHHHHHT--TCEEEEEETTEEEEECC
T ss_pred hhHHHHHHHHHHHhhCCcHHhC--ceEEEEEeCCEEEEEEE
Confidence 4555677788776656887765 47888999999988875
No 68
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=20.40 E-value=65 Score=22.55 Aligned_cols=34 Identities=15% Similarity=0.231 Sum_probs=21.1
Q ss_pred CCCcEEEEEeeCCEEEEEEc-ccCCC-CcchHHHHH
Q 030084 96 DGGNIDVVSVEDGVVSVKLQ-GACGS-CPSSTTTMS 129 (183)
Q Consensus 96 dGGDVELVdVedg~V~VrL~-GACsG-CpsS~~TLk 129 (183)
+|..+.+-++.+..+.|-|. .-|.. |+.....|.
T Consensus 12 ~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~ 47 (164)
T 2ggt_A 12 TGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMI 47 (164)
T ss_dssp TSCEEEGGGGTTCEEEEEEECTTCSSHHHHHHHHHH
T ss_pred CCCEEeHHHcCCCEEEEEEEeCCCCchhHHHHHHHH
Confidence 45566666666666666665 34766 776666663
Done!