Query 030085
Match_columns 183
No_of_seqs 196 out of 1373
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 08:17:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030085.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030085hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02322 acyl-CoA thioesterase 100.0 1.4E-34 3E-39 232.8 18.9 146 16-180 7-152 (154)
2 PRK10254 thioesterase; Provisi 100.0 8.1E-32 1.8E-36 212.4 19.4 131 5-162 5-136 (137)
3 PRK10293 acyl-CoA esterase; Pr 100.0 4.9E-32 1.1E-36 213.0 18.0 120 16-161 15-135 (136)
4 PRK11688 hypothetical protein; 100.0 7.1E-29 1.5E-33 197.0 15.1 126 10-161 11-153 (154)
5 COG2050 PaaI HGG motif-contain 100.0 3E-28 6.6E-33 190.2 17.2 123 15-162 14-137 (141)
6 TIGR00369 unchar_dom_1 unchara 100.0 4.4E-28 9.6E-33 182.6 15.5 115 20-160 1-116 (117)
7 TIGR02286 PaaD phenylacetic ac 100.0 5.8E-27 1.3E-31 176.3 16.4 112 23-161 2-113 (114)
8 KOG3328 HGG motif-containing t 99.9 1.5E-26 3.3E-31 184.6 12.6 118 25-167 27-144 (148)
9 TIGR02447 yiiD_Cterm thioester 99.9 5.5E-23 1.2E-27 161.3 15.9 118 15-161 2-136 (138)
10 cd03443 PaaI_thioesterase PaaI 99.9 4E-20 8.6E-25 135.4 16.1 111 24-160 1-112 (113)
11 PF14539 DUF4442: Domain of un 99.8 1.8E-17 3.8E-22 129.1 14.3 118 17-161 11-132 (132)
12 cd03442 BFIT_BACH Brown fat-in 99.7 8.6E-16 1.9E-20 113.7 16.0 109 33-162 4-113 (123)
13 PRK10694 acyl-CoA esterase; Pr 99.7 6.5E-15 1.4E-19 115.5 15.9 113 33-164 8-121 (133)
14 PF03061 4HBT: Thioesterase su 99.7 3.2E-15 7E-20 102.9 12.2 71 51-121 1-72 (79)
15 cd00556 Thioesterase_II Thioes 99.6 3.8E-15 8.2E-20 107.0 12.1 85 51-160 14-98 (99)
16 COG1607 Acyl-CoA hydrolase [Li 99.6 5.7E-14 1.2E-18 113.7 15.3 106 34-160 11-117 (157)
17 PRK04424 fatty acid biosynthes 99.5 4.2E-12 9E-17 104.5 15.9 104 28-161 76-181 (185)
18 cd00586 4HBT 4-hydroxybenzoyl- 99.4 2.5E-11 5.4E-16 85.9 14.3 98 39-161 3-108 (110)
19 cd03440 hot_dog The hotdog fol 99.2 3E-09 6.6E-14 69.9 14.3 96 39-159 3-99 (100)
20 PLN02647 acyl-CoA thioesterase 99.2 1.1E-09 2.4E-14 101.1 15.7 113 33-163 84-210 (437)
21 PF09500 YiiD_Cterm: Putative 99.2 1.2E-09 2.5E-14 87.5 13.6 117 16-161 9-142 (144)
22 PLN02647 acyl-CoA thioesterase 99.1 3.7E-09 8E-14 97.6 15.1 110 32-162 286-401 (437)
23 PRK10800 acyl-CoA thioesterase 98.8 4.9E-07 1.1E-11 68.7 16.4 103 38-165 4-114 (130)
24 PF13622 4HBT_3: Thioesterase- 98.8 6.2E-08 1.4E-12 80.9 12.2 82 51-163 9-90 (255)
25 cd03445 Thioesterase_II_repeat 98.8 8.1E-08 1.7E-12 70.9 10.9 80 50-160 14-93 (94)
26 TIGR02799 thio_ybgC tol-pal sy 98.8 4.3E-07 9.3E-12 67.9 14.5 100 39-164 3-111 (126)
27 KOG4781 Uncharacterized conser 98.7 6.7E-08 1.5E-12 82.7 8.7 89 33-121 123-211 (237)
28 cd03449 R_hydratase (R)-hydrat 98.7 1E-06 2.3E-11 65.7 13.1 81 51-160 45-127 (128)
29 COG0824 FcbC Predicted thioest 98.7 2.9E-06 6.3E-11 66.4 15.9 104 36-165 5-116 (137)
30 TIGR00051 acyl-CoA thioester h 98.6 1.9E-06 4.1E-11 63.0 12.2 81 41-121 2-90 (117)
31 PRK07531 bifunctional 3-hydrox 98.3 1.2E-05 2.6E-10 74.9 13.8 105 35-164 344-455 (495)
32 TIGR00189 tesB acyl-CoA thioes 98.3 4.7E-06 1E-10 70.8 10.0 78 52-160 21-98 (271)
33 PF13279 4HBT_2: Thioesterase- 98.3 9.8E-05 2.1E-09 54.8 15.7 96 44-164 2-106 (121)
34 cd01288 FabZ FabZ is a 17kD be 98.3 0.00012 2.7E-09 54.9 16.3 108 28-161 12-130 (131)
35 PRK00006 fabZ (3R)-hydroxymyri 98.2 0.00022 4.8E-09 55.5 16.6 108 28-161 27-144 (147)
36 cd03441 R_hydratase_like (R)-h 98.0 0.0002 4.4E-09 52.9 11.3 81 50-159 41-126 (127)
37 PRK10526 acyl-CoA thioesterase 97.9 0.00015 3.2E-09 63.2 11.5 103 20-160 7-109 (286)
38 cd03455 SAV4209 SAV4209 is a S 97.9 0.00033 7.1E-09 52.9 11.8 77 53-159 45-122 (123)
39 cd03453 SAV4209_like SAV4209_l 97.8 0.00075 1.6E-08 51.3 12.6 78 52-159 45-126 (127)
40 PLN02868 acyl-CoA thioesterase 97.8 0.00016 3.5E-09 65.7 10.2 105 20-160 131-235 (413)
41 TIGR01750 fabZ beta-hydroxyacy 97.8 0.002 4.3E-08 49.6 14.9 107 28-160 20-139 (140)
42 cd03447 FAS_MaoC FAS_MaoC, the 97.8 0.0012 2.7E-08 50.9 13.0 81 52-160 43-124 (126)
43 cd03451 FkbR2 FkbR2 is a Strep 97.7 0.00027 5.9E-09 54.3 9.2 81 52-161 54-142 (146)
44 KOG2763 Acyl-CoA thioesterase 97.7 0.0006 1.3E-08 62.0 12.3 90 31-121 194-284 (357)
45 cd03446 MaoC_like MoaC_like 97.7 0.00039 8.4E-09 53.1 9.4 80 53-160 52-139 (140)
46 COG4109 Predicted transcriptio 97.7 0.00033 7.1E-09 64.0 10.1 94 41-161 337-430 (432)
47 PRK13692 (3R)-hydroxyacyl-ACP 97.7 0.00061 1.3E-08 54.8 10.8 64 80-169 84-151 (159)
48 cd03454 YdeM YdeM is a Bacillu 97.6 0.0011 2.3E-08 50.9 11.2 81 53-161 50-139 (140)
49 cd00493 FabA_FabZ FabA/Z, beta 97.6 0.0093 2E-07 44.4 15.5 106 28-159 11-129 (131)
50 PRK08190 bifunctional enoyl-Co 97.6 0.0018 3.9E-08 60.3 13.6 81 53-162 60-142 (466)
51 cd01289 FabA_like Domain of un 97.5 0.018 4E-07 44.9 16.9 107 28-160 18-135 (138)
52 cd03452 MaoC_C MaoC_C The C-t 97.5 0.0023 5E-08 49.9 11.2 81 53-162 52-139 (142)
53 PRK13691 (3R)-hydroxyacyl-ACP 97.4 0.0045 9.8E-08 50.2 12.2 60 81-166 85-148 (166)
54 COG5496 Predicted thioesterase 97.4 0.01 2.2E-07 47.0 13.5 102 38-166 8-117 (130)
55 cd03444 Thioesterase_II_repeat 97.3 0.0071 1.5E-07 45.1 11.8 83 53-160 16-103 (104)
56 PLN02370 acyl-ACP thioesterase 97.2 0.042 9E-07 51.1 17.6 122 18-163 121-256 (419)
57 PF13622 4HBT_3: Thioesterase- 97.2 0.0043 9.3E-08 51.8 9.9 77 59-160 175-254 (255)
58 PRK13188 bifunctional UDP-3-O- 97.1 0.039 8.5E-07 51.9 16.3 108 28-161 341-459 (464)
59 TIGR00189 tesB acyl-CoA thioes 97.0 0.0098 2.1E-07 50.5 11.0 83 53-160 182-269 (271)
60 PF07977 FabA: FabA-like domai 96.8 0.14 3.1E-06 39.3 15.8 94 28-121 12-129 (138)
61 cd01287 FabA FabA, beta-hydrox 96.4 0.35 7.5E-06 38.7 16.3 110 28-163 13-148 (150)
62 KOG3016 Acyl-CoA thioesterase 96.4 0.036 7.7E-07 49.3 10.4 102 27-160 14-115 (294)
63 COG2030 MaoC Acyl dehydratase 96.1 0.16 3.4E-06 40.6 11.8 52 86-162 100-155 (159)
64 PF01575 MaoC_dehydratas: MaoC 96.0 0.09 2E-06 39.6 9.4 67 50-119 49-117 (122)
65 PRK13693 (3R)-hydroxyacyl-ACP 96.0 0.25 5.4E-06 38.8 12.2 66 51-121 54-126 (142)
66 cd03448 HDE_HSD HDE_HSD The R 95.9 0.16 3.4E-06 39.0 10.4 63 52-120 45-107 (122)
67 cd03450 NodN NodN (nodulation 95.8 0.17 3.8E-06 40.2 10.7 67 53-121 58-131 (149)
68 KOG2763 Acyl-CoA thioesterase 95.8 0.17 3.7E-06 46.2 11.7 98 43-160 15-123 (357)
69 PRK10526 acyl-CoA thioesterase 95.6 0.24 5.3E-06 43.1 11.9 84 53-161 193-282 (286)
70 PF13452 MaoC_dehydrat_N: N-te 95.4 0.078 1.7E-06 40.0 7.2 44 78-121 73-123 (132)
71 TIGR02278 PaaN-DH phenylacetic 95.1 0.12 2.6E-06 50.3 9.1 80 53-161 575-661 (663)
72 PF01643 Acyl-ACP_TE: Acyl-ACP 95.1 1.4 3E-05 37.7 14.6 103 38-164 5-121 (261)
73 PRK05174 3-hydroxydecanoyl-(ac 95.0 1.6 3.5E-05 35.7 15.7 94 28-121 39-150 (172)
74 PLN02864 enoyl-CoA hydratase 94.9 0.45 9.8E-06 42.2 11.3 92 37-160 204-304 (310)
75 PRK11563 bifunctional aldehyde 94.8 0.19 4E-06 48.9 9.3 80 53-161 587-673 (675)
76 TIGR01749 fabA beta-hydroxyacy 94.2 2.5 5.5E-05 34.4 14.0 93 28-121 36-147 (169)
77 COG1946 TesB Acyl-CoA thioeste 94.2 0.15 3.3E-06 45.3 6.8 81 50-161 30-110 (289)
78 PLN02868 acyl-CoA thioesterase 94.1 0.38 8.2E-06 43.8 9.3 81 53-158 326-410 (413)
79 COG0764 FabA 3-hydroxymyristoy 93.2 3.7 8.1E-05 33.0 15.9 108 28-161 24-143 (147)
80 PF03756 AfsA: A-factor biosyn 92.4 3.8 8.3E-05 31.1 14.6 100 34-161 19-132 (132)
81 PLN02864 enoyl-CoA hydratase 90.9 3 6.4E-05 37.1 10.3 63 78-164 92-158 (310)
82 COG1946 TesB Acyl-CoA thioeste 90.7 2.3 5E-05 37.9 9.4 86 53-163 193-284 (289)
83 PF02551 Acyl_CoA_thio: Acyl-C 89.0 3.3 7.1E-05 32.9 8.1 54 79-157 74-128 (131)
84 PF14765 PS-DH: Polyketide syn 86.9 13 0.00028 31.1 11.1 101 35-164 182-290 (295)
85 PF01643 Acyl-ACP_TE: Acyl-ACP 81.0 29 0.00064 29.5 11.0 97 34-160 163-260 (261)
86 KOG3016 Acyl-CoA thioesterase 79.8 9.7 0.00021 34.1 7.7 80 52-156 208-292 (294)
87 PLN02370 acyl-ACP thioesterase 58.2 1.1E+02 0.0024 28.7 10.0 65 36-105 301-365 (419)
88 PF11684 DUF3280: Protein of u 53.5 41 0.00088 26.8 5.5 41 96-160 80-120 (140)
89 COG3884 FatA Acyl-ACP thioeste 51.3 1.7E+02 0.0036 25.8 9.3 43 79-121 55-97 (250)
90 TIGR02813 omega_3_PfaA polyket 49.1 92 0.002 35.7 9.1 80 60-164 2493-2575(2582)
91 PF10029 DUF2271: Predicted pe 31.6 1.2E+02 0.0025 24.0 5.0 48 72-119 72-120 (139)
92 cd04316 ND_PkAspRS_like_N ND_P 26.2 1.5E+02 0.0032 21.7 4.5 31 89-121 5-37 (108)
93 PF11906 DUF3426: Protein of u 23.7 3.3E+02 0.0073 20.7 7.5 38 84-121 54-95 (149)
94 COG2088 SpoVG Uncharacterized 22.2 1.5E+02 0.0032 22.4 3.7 13 147-159 13-25 (95)
95 cd04317 EcAspRS_like_N EcAspRS 20.8 1.8E+02 0.0039 22.0 4.2 21 87-107 5-25 (135)
96 PF08670 MEKHLA: MEKHLA domain 20.8 1.6E+02 0.0034 23.7 3.9 21 103-123 109-129 (148)
97 COG3777 Uncharacterized conser 20.2 2.3E+02 0.005 25.2 5.0 69 35-110 184-253 (273)
No 1
>PLN02322 acyl-CoA thioesterase
Probab=100.00 E-value=1.4e-34 Score=232.78 Aligned_cols=146 Identities=64% Similarity=1.044 Sum_probs=130.1
Q ss_pred CCCCchhhhcCCEEEEEeCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhcCCceeEEEEEeEEEecCCCC
Q 030085 16 AVPDAPLKAIGFELEELTPERIIGCFRVTQNSCQPFKVLHGGVSALIAESLASMGAHMASGFKRVAGVQLTINHLKSAEL 95 (183)
Q Consensus 16 ~~~~p~~~~Lg~~~~~~~~g~v~~~m~v~~~~~Np~G~lHGG~~a~LaD~A~g~a~~~~~~~~~~vTv~l~i~flrpa~~ 95 (183)
...|||+++||+++.++++|+++++||++++|+||+|.+|||++++|+|+++++++....++..++|++++||||||++.
T Consensus 7 ~~~dpf~~~LGi~l~ei~~G~~~~~m~v~~~~~N~~G~vHGGv~atLaDta~g~A~~~~~~~~~~vTiel~infLrpa~~ 86 (154)
T PLN02322 7 KAIDPPLHMLGFEFDELSPTRVTGRLPVSPMCCQPFKVLHGGVSALIAESLASLGAHMASGFKRVAGIQLSINHLKSADL 86 (154)
T ss_pred cccchHHHHCCCEEEEEECCEEEEEEECCHHHcCCCCCccHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEEEeccCCC
Confidence 35799999999999999999999999999999999999999999999999999888654444578999999999999999
Q ss_pred CCEEEEEEEEEEeCCcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEEEecCCCCccchhHHH
Q 030085 96 GDLVRAVATPINLGKTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLLCNLPVPDHAKHAGDA 175 (183)
Q Consensus 96 Gd~l~a~a~vi~~Gr~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~~~p~p~~~~~~~~~ 175 (183)
|+.|+|+|+++|.|||+++|+++||++....| +++++||.+++|++++.|+|+.+|++++-
T Consensus 87 G~~L~Aea~vv~~Gr~~~~~ev~V~~~~~~~~-------------------~~~~lva~a~~T~~~~~~~~~~~~~~~~~ 147 (154)
T PLN02322 87 GDLVFAEATPVSTGKTIQVWEVKLWKTTDKDK-------------------ANKILISSSRVTLICNLPIPDNAKDAANM 147 (154)
T ss_pred CCEEEEEEEEEecCCCEEEEEEEEEECCCCcc-------------------cCCeEEEEEEEEEEEccCChhhhhhhHHH
Confidence 98999999999999999999999998321000 23899999999999999999999999999
Q ss_pred HHhhh
Q 030085 176 LKNSA 180 (183)
Q Consensus 176 ~~~~~ 180 (183)
|+--+
T Consensus 148 ~~~~~ 152 (154)
T PLN02322 148 LRMQA 152 (154)
T ss_pred HHHhh
Confidence 87543
No 2
>PRK10254 thioesterase; Provisional
Probab=100.00 E-value=8.1e-32 Score=212.41 Aligned_cols=131 Identities=23% Similarity=0.383 Sum_probs=118.6
Q ss_pred CCCchhhccccCCCCchhhhcCCEEEEEeCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhc-CCceeEEE
Q 030085 5 SSSNSKQRKRIAVPDAPLKAIGFELEELTPERIIGCFRVTQNSCQPFKVLHGGVSALIAESLASMGAHMAS-GFKRVAGV 83 (183)
Q Consensus 5 ~~~~~~~~~~~~~~~p~~~~Lg~~~~~~~~g~v~~~m~v~~~~~Np~G~lHGG~~a~LaD~A~g~a~~~~~-~~~~~vTv 83 (183)
.+....+.++. .++||.++||+++.++++|+++++||++++++||+|.+|||++++|+|+++++|+.+.. ++..++|+
T Consensus 5 ~~~~~~~~~~~-~~~~~~~~LGi~i~ei~~g~~~~~l~v~~~~~n~~G~vHGGv~~tLaD~a~g~A~~~~~~~g~~~vTi 83 (137)
T PRK10254 5 RHLTLDELNAT-SDNTMVAHLGIVYTRLGDDVLEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFLMTRDGQCVVGT 83 (137)
T ss_pred ccCCHHHHhhh-cccchHHhhCcEEEEEeCCEEEEEEEcCccccCCCCcchHHHHHHHHHHHHHHHHHhhCCCCCeEEEE
Confidence 33444555555 68899999999999999999999999999999999999999999999999999987654 45789999
Q ss_pred EEeEEEecCCCCCCEEEEEEEEEEeCCcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEEEe
Q 030085 84 QLTINHLKSAELGDLVRAVATPINLGKTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLLCN 162 (183)
Q Consensus 84 ~l~i~flrpa~~Gd~l~a~a~vi~~Gr~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~~ 162 (183)
+++||||||++.| .|+|+|+++|.||++.+|+++|++ ++|+++|.+++|+++.
T Consensus 84 el~in~Lrp~~~g-~l~a~a~vi~~Gr~~~v~~~~v~d-------------------------~~g~l~a~~~~t~~i~ 136 (137)
T PRK10254 84 ELNATHHRPVSEG-KVRGVCQPLHLGRQNQSWEIVVFD-------------------------EQGRRCCTCRLGTAVL 136 (137)
T ss_pred EEEeEEeccCcCC-eEEEEEEEEecCcCEEEEEEEEEc-------------------------CCCCEEEEEEEEEEEe
Confidence 9999999999988 799999999999999999999998 7899999999999853
No 3
>PRK10293 acyl-CoA esterase; Provisional
Probab=100.00 E-value=4.9e-32 Score=212.97 Aligned_cols=120 Identities=28% Similarity=0.512 Sum_probs=112.6
Q ss_pred CCCCchhhhcCCEEEEEeCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhcC-CceeEEEEEeEEEecCCC
Q 030085 16 AVPDAPLKAIGFELEELTPERIIGCFRVTQNSCQPFKVLHGGVSALIAESLASMGAHMASG-FKRVAGVQLTINHLKSAE 94 (183)
Q Consensus 16 ~~~~p~~~~Lg~~~~~~~~g~v~~~m~v~~~~~Np~G~lHGG~~a~LaD~A~g~a~~~~~~-~~~~vTv~l~i~flrpa~ 94 (183)
...+||.++||++++++++|+++++||++++|+||+|.+|||++++|+|.++++++.+..+ +..++|++++||||||++
T Consensus 15 ~~~~~~~~~LGi~i~~~~~g~~~~~~~v~~~~~n~~G~lHGGv~~tLaD~a~~~a~~~~~~~~~~~vTiel~infl~p~~ 94 (136)
T PRK10293 15 MGEGNMVGLLDIRFEHIGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEINANHVRSAR 94 (136)
T ss_pred hccccHHHhcCcEEEEEeCCEEEEEEEcCHHHcCCcCcccHHHHHHHHHHHHHHHHHhcccCCceEEEEEEEeEEecccC
Confidence 3568999999999999999999999999999999999999999999999999988877654 467899999999999999
Q ss_pred CCCEEEEEEEEEEeCCcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEEE
Q 030085 95 LGDLVRAVATPINLGKTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLLC 161 (183)
Q Consensus 95 ~Gd~l~a~a~vi~~Gr~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~ 161 (183)
.| .|+|+|+++|.|||+++|+++++| ++|+++|.+++|+++
T Consensus 95 ~g-~l~a~a~vv~~Gr~~~~~~~~v~d-------------------------~~g~l~A~~~~t~~i 135 (136)
T PRK10293 95 EG-RVRGVCKPLHLGSRHQVWQIEIFD-------------------------EKGRLCCSSRLTTAI 135 (136)
T ss_pred Cc-eEEEEEEEEecCCCEEEEEEEEEe-------------------------CCCCEEEEEEEEEEE
Confidence 88 799999999999999999999999 789999999999985
No 4
>PRK11688 hypothetical protein; Provisional
Probab=99.96 E-value=7.1e-29 Score=197.03 Aligned_cols=126 Identities=22% Similarity=0.328 Sum_probs=111.4
Q ss_pred hhccccC-CCCchhhhcCCEEEEEeCCEEEEEEEcCCCCcC--CCCcccHHHHHHHHHHHHHHHHHHhcC----------
Q 030085 10 KQRKRIA-VPDAPLKAIGFELEELTPERIIGCFRVTQNSCQ--PFKVLHGGVSALIAESLASMGAHMASG---------- 76 (183)
Q Consensus 10 ~~~~~~~-~~~p~~~~Lg~~~~~~~~g~v~~~m~v~~~~~N--p~G~lHGG~~a~LaD~A~g~a~~~~~~---------- 76 (183)
+..+.+. ..+||.++||++++++++|+++++|+++++|+| +.|.+|||++++|+|.++++++++...
T Consensus 11 ~~~~~~~~~~~pf~~~lG~~~~~~~~g~~~~~l~~~~~~~~n~~~G~vHGG~i~tl~D~a~g~a~~~~~~~~~~~~~~~~ 90 (154)
T PRK11688 11 KLVGEIFVYHMPFNRLLGLELERLEPDFVELSFKMQPELVGNIAQSILHGGVIASVLDVAGGLVCVGGILARHEDISEEE 90 (154)
T ss_pred HHHHHHHHhcCCHHHHhCcEEEEEeCCEEEEEeeCCHHHcCCCCcCeeeHHHHHHHHHHHHHHHHHhhcccccccccccc
Confidence 3344444 378999999999999999999999999999985 689999999999999999999876431
Q ss_pred ----CceeEEEEEeEEEecCCCCCCEEEEEEEEEEeCCcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEE
Q 030085 77 ----FKRVAGVQLTINHLKSAELGDLVRAVATPINLGKTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMI 152 (183)
Q Consensus 77 ----~~~~vTv~l~i~flrpa~~Gd~l~a~a~vi~~Gr~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lv 152 (183)
...++|++|++|||||++ |+.|+++|+++|.|||+++++++|++ ++|+++
T Consensus 91 ~~~~~~~~vTi~l~i~fl~p~~-g~~l~a~a~v~~~g~r~~~~~~~i~~-------------------------~~g~lv 144 (154)
T PRK11688 91 LRQRLSRLGTIDLRVDYLRPGR-GERFTATSSVLRAGNKVAVARMELHN-------------------------EQGVHI 144 (154)
T ss_pred cccccccceEEEEEEEeeccCC-CCeEEEEEEEEEccCCEEEEEEEEEC-------------------------CCCCEE
Confidence 124689999999999997 77999999999999999999999998 679999
Q ss_pred EEEEEEEEE
Q 030085 153 SSSTVTLLC 161 (183)
Q Consensus 153 A~~t~T~~~ 161 (183)
|++++||++
T Consensus 145 A~a~~t~~v 153 (154)
T PRK11688 145 ASGTATYLV 153 (154)
T ss_pred EEEEEEEEe
Confidence 999999984
No 5
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.96 E-value=3e-28 Score=190.19 Aligned_cols=123 Identities=27% Similarity=0.371 Sum_probs=113.9
Q ss_pred cCCCCchhhhcCCEEEEEeCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhcCC-ceeEEEEEeEEEecCC
Q 030085 15 IAVPDAPLKAIGFELEELTPERIIGCFRVTQNSCQPFKVLHGGVSALIAESLASMGAHMASGF-KRVAGVQLTINHLKSA 93 (183)
Q Consensus 15 ~~~~~p~~~~Lg~~~~~~~~g~v~~~m~v~~~~~Np~G~lHGG~~a~LaD~A~g~a~~~~~~~-~~~vTv~l~i~flrpa 93 (183)
+...+||.+.||++++++++|+++++|++.+++.|++|++|||++++|+|.++++|++...+. ...+|++++||||||+
T Consensus 14 ~~~~~~~~~~lg~~~~~~~~g~~~~~l~~~~~~~~~~G~~HGG~i~alaD~a~~~a~~~~~~~~~~~~ti~l~i~flr~~ 93 (141)
T COG2050 14 FLERSPFLKTLGIEIEEIEEGEAEATLPVDPELLNPGGILHGGVIAALADSAAGLAANSLLGVVALAVTLELNINFLRPV 93 (141)
T ss_pred hhcccchhhhcCcEEEEEecceEEEEeecCHHHcCCCceeeHHHHHHHHHHHHHHHHhhccCccceeEEEEEEehhccCC
Confidence 347899999999999999999999999999999999999999999999999999999987665 4569999999999999
Q ss_pred CCCCEEEEEEEEEEeCCcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEEEe
Q 030085 94 ELGDLVRAVATPINLGKTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLLCN 162 (183)
Q Consensus 94 ~~Gd~l~a~a~vi~~Gr~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~~ 162 (183)
+.|+ |+++|+|+|.||++++|++++++. +.+++||++++|+++.
T Consensus 94 ~~g~-v~a~a~v~~~G~~~~v~~i~v~~~------------------------~~~~lva~~~~t~~v~ 137 (141)
T COG2050 94 KEGD-VTAEARVLHLGRRVAVVEIEVKND------------------------EGGRLVAKGTGTYAVL 137 (141)
T ss_pred CCCe-EEEEEEEEeeCCEEEEEEEEEEEC------------------------CCCeEEEEEEEEEEEe
Confidence 9996 999999999999999999999961 5679999999999953
No 6
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=99.96 E-value=4.4e-28 Score=182.62 Aligned_cols=115 Identities=30% Similarity=0.444 Sum_probs=107.9
Q ss_pred chhhhcCCEEEEEeCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhcC-CceeEEEEEeEEEecCCCCCCE
Q 030085 20 APLKAIGFELEELTPERIIGCFRVTQNSCQPFKVLHGGVSALIAESLASMGAHMASG-FKRVAGVQLTINHLKSAELGDL 98 (183)
Q Consensus 20 p~~~~Lg~~~~~~~~g~v~~~m~v~~~~~Np~G~lHGG~~a~LaD~A~g~a~~~~~~-~~~~vTv~l~i~flrpa~~Gd~ 98 (183)
||.++||+++.+++++++++++++.++++|+.|.+|||++++++|.++++++....+ +...+|++++|+|+||++.| .
T Consensus 1 p~~~~lg~~~~~~~~g~~~~~~~v~~~~~n~~g~vhGG~l~~l~D~a~~~a~~~~~~~~~~~vt~~l~i~f~~p~~~g-~ 79 (117)
T TIGR00369 1 PLVSFLGIEIEELGDGFLEATMPVDERTLQPFGSLHGGVSAALADTAGSAAGYLCNSGGQAVVGLELNANHLRPAREG-K 79 (117)
T ss_pred CcccccCeEEEEecCCEEEEEEEcCHHHcCCcccChHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEeeeccccCCC-E
Confidence 789999999999999999999999999999999999999999999999887665443 46789999999999999999 8
Q ss_pred EEEEEEEEEeCCcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEE
Q 030085 99 VRAVATPINLGKTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLL 160 (183)
Q Consensus 99 l~a~a~vi~~Gr~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~ 160 (183)
|+++|++++.||++.++++++++ ++|++||++++||+
T Consensus 80 l~a~a~v~~~gr~~~~~~~~i~~-------------------------~~g~~va~~~~t~~ 116 (117)
T TIGR00369 80 VRAIAQVVHLGRQTGVAEIEIVD-------------------------EQGRLCALSRGTTA 116 (117)
T ss_pred EEEEEEEEecCceEEEEEEEEEC-------------------------CCCCEEEEEEEEEc
Confidence 99999999999999999999998 67999999999998
No 7
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=99.95 E-value=5.8e-27 Score=176.31 Aligned_cols=112 Identities=20% Similarity=0.213 Sum_probs=104.1
Q ss_pred hhcCCEEEEEeCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhcCCceeEEEEEeEEEecCCCCCCEEEEE
Q 030085 23 KAIGFELEELTPERIIGCFRVTQNSCQPFKVLHGGVSALIAESLASMGAHMASGFKRVAGVQLTINHLKSAELGDLVRAV 102 (183)
Q Consensus 23 ~~Lg~~~~~~~~g~v~~~m~v~~~~~Np~G~lHGG~~a~LaD~A~g~a~~~~~~~~~~vTv~l~i~flrpa~~Gd~l~a~ 102 (183)
++||++++++++|++.++|+++++|+|+.|++|||++++++|.++++++.. .....+|++++++|+||++.||.|+++
T Consensus 2 ~~lg~~i~~~~~g~~~~~l~~~~~~~n~~g~~HGG~i~al~D~~~~~~~~~--~~~~~~t~~~~i~f~rp~~~G~~l~~~ 79 (114)
T TIGR02286 2 KALGIDILELGPGFARVAMTVRADMLNGHGTAHGGFLFSLADSAFAYACNS--YGDAAVAAQCTIDFLRPGRAGERLEAE 79 (114)
T ss_pred cccCeEEEEecCCEEEEEEECCHHHcCcCCCchHHHHHHHHHHHHHHHhcC--CCCceEEEEEEEEEecCCCCCCEEEEE
Confidence 689999999999999999999999999999999999999999998777643 334578999999999999999999999
Q ss_pred EEEEEeCCcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEEE
Q 030085 103 ATPINLGKTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLLC 161 (183)
Q Consensus 103 a~vi~~Gr~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~ 161 (183)
|++++.||+++++++++++ ++|+++|.+++||++
T Consensus 80 a~v~~~g~~~~~~~~~i~~-------------------------~~~~~va~~~~t~~~ 113 (114)
T TIGR02286 80 AVEVSRGGRTGTYDVEVVN-------------------------QEGELVALFRGTSRR 113 (114)
T ss_pred EEEEEeCCcEEEEEEEEEc-------------------------CCCCEEEEEEEEEEE
Confidence 9999999999999999998 679999999999994
No 8
>KOG3328 consensus HGG motif-containing thioesterase [General function prediction only]
Probab=99.94 E-value=1.5e-26 Score=184.64 Aligned_cols=118 Identities=30% Similarity=0.426 Sum_probs=108.6
Q ss_pred cCCEEEEEeCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhcCCceeEEEEEeEEEecCCCCCCEEEEEEE
Q 030085 25 IGFELEELTPERIIGCFRVTQNSCQPFKVLHGGVSALIAESLASMGAHMASGFKRVAGVQLTINHLKSAELGDLVRAVAT 104 (183)
Q Consensus 25 Lg~~~~~~~~g~v~~~m~v~~~~~Np~G~lHGG~~a~LaD~A~g~a~~~~~~~~~~vTv~l~i~flrpa~~Gd~l~a~a~ 104 (183)
-++++...+||+++++|++++.|+|++++||||++|+|+|.++++|+....+..+.+++||+|+||+||++||.|.++|+
T Consensus 27 ~~i~~~~~~~Grv~ce~kV~~~~~N~~k~LHGG~tAtLvD~i~s~~~~~~~~~~~gvsvdLsvsyL~~AklGe~l~i~a~ 106 (148)
T KOG3328|consen 27 NNIRIVSAEPGRVSCELKVTPDHLNRFKTLHGGATATLVDLITSAALLMTSGFKPGVSVDLSVSYLSSAKLGEELEIEAT 106 (148)
T ss_pred CceEEeeccCceEEEEEEeCHHHcCccccccccchhhHHHHHhhHHHHhccCCCCceEEEEEhhhccccCCCCeEEEEEE
Confidence 46799999999999999999999999999999999999999999887766667899999999999999999999999999
Q ss_pred EEEeCCcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEEEecCCCC
Q 030085 105 PINLGKTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLLCNLPVPD 167 (183)
Q Consensus 105 vi~~Gr~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~~~p~p~ 167 (183)
++|.||+++||+|++|+. .+|+++|.+++|+| ..|.+.
T Consensus 107 ~vr~Gk~la~t~v~l~~K------------------------~t~kiia~grhtk~-~~~~~~ 144 (148)
T KOG3328|consen 107 VVRVGKTLAFTDVELRRK------------------------STGKIIAKGRHTKY-FRPASK 144 (148)
T ss_pred EeecCceEEEEEEEEEEc------------------------CCCeEEEecceEEE-eecCCC
Confidence 999999999999999982 67999999999999 445443
No 9
>TIGR02447 yiiD_Cterm thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PFAM model pfam00583). The function of this protein is unknown.
Probab=99.91 E-value=5.5e-23 Score=161.25 Aligned_cols=118 Identities=10% Similarity=-0.015 Sum_probs=101.6
Q ss_pred cCCCCchhhhcCCEEEEEeCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHh----cCCceeEEEEEeEEEe
Q 030085 15 IAVPDAPLKAIGFELEELTPERIIGCFRVTQNSCQPFKVLHGGVSALIAESLASMGAHMA----SGFKRVAGVQLTINHL 90 (183)
Q Consensus 15 ~~~~~p~~~~Lg~~~~~~~~g~v~~~m~v~~~~~Np~G~lHGG~~a~LaD~A~g~a~~~~----~~~~~~vTv~l~i~fl 90 (183)
+....||.++||+++++++++++++++|+.++ .|+.|++|||++++|+|.+++.++... ..+..++|++++|+|+
T Consensus 2 ~~~~ip~~~~lGi~v~e~~~g~~~v~~pl~~n-~N~~G~~hGG~l~tlad~a~~~~~~~~~~~~~~~~~~vt~~~~i~yl 80 (138)
T TIGR02447 2 LHSAIPLSEAMGIAVSSYTGGELRLSAPLAAN-INHHGTMFGGSLYTLATLSGWGLLWLRLQELGIDGDIVIADSHIRYL 80 (138)
T ss_pred chhhCCHHHHcCCEEEEeeCCEEEEEeECCCC-cCCCCceehhHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeeeEEc
Confidence 34568999999999999999999999999996 899999999999999998866544322 1235789999999999
Q ss_pred cCCCCCCEEEEEEEE-------------EEeCCcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEE
Q 030085 91 KSAELGDLVRAVATP-------------INLGKTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTV 157 (183)
Q Consensus 91 rpa~~Gd~l~a~a~v-------------i~~Gr~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~ 157 (183)
+|++.+ ++++|++ .+.||+..+++++|++ +|+++|.+++
T Consensus 81 ~P~~~~--~~a~~~~~~~~~~~~~~~~l~~~gr~~~~~~~~v~~--------------------------~~~lvA~~~g 132 (138)
T TIGR02447 81 APVTGD--PVANCEAPDLESWEAFLATLQRGGKARVKLEAQISS--------------------------DGKLAATFSG 132 (138)
T ss_pred CCcCCC--eEEEEEcCCHHHHHHHHHHHHhCCceEEEEEEEEEE--------------------------CCEEEEEEEE
Confidence 999854 7777777 7999999999999996 4699999999
Q ss_pred EEEE
Q 030085 158 TLLC 161 (183)
Q Consensus 158 T~~~ 161 (183)
||++
T Consensus 133 ~~~~ 136 (138)
T TIGR02447 133 EYVA 136 (138)
T ss_pred EEEE
Confidence 9984
No 10
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=99.86 E-value=4e-20 Score=135.45 Aligned_cols=111 Identities=23% Similarity=0.317 Sum_probs=102.5
Q ss_pred hcCCEEEEEeCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhc-CCceeEEEEEeEEEecCCCCCCEEEEE
Q 030085 24 AIGFELEELTPERIIGCFRVTQNSCQPFKVLHGGVSALIAESLASMGAHMAS-GFKRVAGVQLTINHLKSAELGDLVRAV 102 (183)
Q Consensus 24 ~Lg~~~~~~~~g~v~~~m~v~~~~~Np~G~lHGG~~a~LaD~A~g~a~~~~~-~~~~~vTv~l~i~flrpa~~Gd~l~a~ 102 (183)
.+|+++.+.+++++++++++.+.++|+.|.+|||++++++|.+++..+.... ++...++++++++|++|++. +.|+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~vhgg~l~~l~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~-~~v~~~ 79 (113)
T cd03443 1 LLGIRVVEVGPGRVVLRLPVRPRHLNPGGIVHGGAIATLADTAGGLAALSALPPGALAVTVDLNVNYLRPARG-GDLTAR 79 (113)
T ss_pred CCcEEEEEecCCeEEEEeeCcHhhcCCCCeEeHHHHHHHHHHHHHHHHhhccCCCCceEEEEEEEeEEcCCCC-CeEEEE
Confidence 3789999999999999999999999999999999999999999988877654 34678999999999999999 799999
Q ss_pred EEEEEeCCcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEE
Q 030085 103 ATPINLGKTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLL 160 (183)
Q Consensus 103 a~vi~~Gr~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~ 160 (183)
+++.+.||+...+++++++ ++|+++|+++++|+
T Consensus 80 ~~v~~~g~~~~~~~~~~~~-------------------------~~~~~~a~a~~~~~ 112 (113)
T cd03443 80 ARVVKLGRRLAVVEVEVTD-------------------------EDGKLVATARGTFA 112 (113)
T ss_pred EEEEecCceEEEEEEEEEC-------------------------CCCCEEEEEEEEEe
Confidence 9999999999999999997 56899999999987
No 11
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=99.76 E-value=1.8e-17 Score=129.06 Aligned_cols=118 Identities=20% Similarity=0.213 Sum_probs=93.2
Q ss_pred CCCchhhhcCCEEEEEeCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhcCC-ceeEEEEEeEEEecCCCC
Q 030085 17 VPDAPLKAIGFELEELTPERIIGCFRVTQNSCQPFKVLHGGVSALIAESLASMGAHMASGF-KRVAGVQLTINHLKSAEL 95 (183)
Q Consensus 17 ~~~p~~~~Lg~~~~~~~~g~v~~~m~v~~~~~Np~G~lHGG~~a~LaD~A~g~a~~~~~~~-~~~vTv~l~i~flrpa~~ 95 (183)
...||...+|+++++++++++.++||..+...|+.|++|||++++++|.++|+.+....+. ..++..+++|+|++|++
T Consensus 11 ~~~P~~~~~g~~i~~~~~~~~~v~l~~~~~~~N~~gt~h~gAl~~laE~~~g~~~~~~l~~~~~~~~k~~~i~f~kpa~- 89 (132)
T PF14539_consen 11 NKVPFFGTAGIRIEEVDPGRVVVRLPLRPRNRNHVGTIHAGALFTLAEPAYGLLLMSNLGDKYRVWDKSAEIDFLKPAR- 89 (132)
T ss_dssp HCSHHHHCCT-EEEEEETTEEEEEE-S-CCGB-TTSSB-HHHHHHHHHCHHHHHHHHHS-TTEEEEEEEEEEEE-S----
T ss_pred hhcCccccceeEEEEEcCCEEEEEEcCCccccCcCcchHHHHHHHHHHHHHHHHHHHhCCCcEEEEEEeeEEEEEeccC-
Confidence 3568999999999999999999999999999999999999999999999999988887765 56789999999999998
Q ss_pred CCEEEEEEEEEEe--C-CcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEEE
Q 030085 96 GDLVRAVATPINL--G-KTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLLC 161 (183)
Q Consensus 96 Gd~l~a~a~vi~~--G-r~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~ 161 (183)
| .|++++++... + |--..++++++| ++|.+||.++.|+|+
T Consensus 90 g-~v~a~~~~~~e~~~~~~~~~~~v~i~D-------------------------~~G~~Va~~~~t~~V 132 (132)
T PF14539_consen 90 G-DVTATAELTEEQIGERGELTVPVEITD-------------------------ADGEVVAEATITWYV 132 (132)
T ss_dssp S--EEEEEE-TCCHCCHEEEEEEEEEEEE-------------------------TTC-EEEEEEEEEEE
T ss_pred C-cEEEEEEcCHHHhCCCcEEEEEEEEEE-------------------------CCCCEEEEEEEEEEC
Confidence 6 49999987653 2 556777899998 789999999999984
No 12
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=99.71 E-value=8.6e-16 Score=113.70 Aligned_cols=109 Identities=19% Similarity=0.209 Sum_probs=92.8
Q ss_pred eCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhcCCceeEEEEE-eEEEecCCCCCCEEEEEEEEEEeCCc
Q 030085 33 TPERIIGCFRVTQNSCQPFKVLHGGVSALIAESLASMGAHMASGFKRVAGVQL-TINHLKSAELGDLVRAVATPINLGKT 111 (183)
Q Consensus 33 ~~g~v~~~m~v~~~~~Np~G~lHGG~~a~LaD~A~g~a~~~~~~~~~~vTv~l-~i~flrpa~~Gd~l~a~a~vi~~Gr~ 111 (183)
.+++++.++++.+.++|+.|.+|||++++++|.++++++..... ...+++.+ +++|++|+..||.|.+++++.+.||+
T Consensus 4 ~~~~~~~~~~v~~~~~d~~g~v~~g~~~~~~d~a~~~~~~~~~~-~~~~~~~~~~~~f~~p~~~gd~l~i~~~v~~~g~~ 82 (123)
T cd03442 4 EDTELSTRELVLPEDTNHHGTIFGGWLLEWMDELAGIAAYRHAG-GRVVTASVDRIDFLKPVRVGDVVELSARVVYTGRT 82 (123)
T ss_pred CccceEEEEEeCCcccCcCCcEeHHHHHHHHHHHHHHHHHHHhC-CcEEEEEECceEEcCccccCcEEEEEEEEEEecCC
Confidence 56889999999999999999999999999999999877654432 34677788 79999999999999999999999999
Q ss_pred EEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEEEe
Q 030085 112 IQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLLCN 162 (183)
Q Consensus 112 ~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~~ 162 (183)
...+++++++.+ ...++++++|+++.|+.+.
T Consensus 83 ~~~~~~~i~~~~--------------------~~~~~~~~~a~~~~~~v~~ 113 (123)
T cd03442 83 SMEVGVEVEAED--------------------PLTGERRLVTSAYFTFVAL 113 (123)
T ss_pred eEEEEEEEEEec--------------------CCCCcEEEEEEEEEEEEEE
Confidence 999999999821 0012468999999999865
No 13
>PRK10694 acyl-CoA esterase; Provisional
Probab=99.66 E-value=6.5e-15 Score=115.51 Aligned_cols=113 Identities=14% Similarity=0.167 Sum_probs=93.3
Q ss_pred eCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhcCCceeEEEEE-eEEEecCCCCCCEEEEEEEEEEeCCc
Q 030085 33 TPERIIGCFRVTQNSCQPFKVLHGGVSALIAESLASMGAHMASGFKRVAGVQL-TINHLKSAELGDLVRAVATPINLGKT 111 (183)
Q Consensus 33 ~~g~v~~~m~v~~~~~Np~G~lHGG~~a~LaD~A~g~a~~~~~~~~~~vTv~l-~i~flrpa~~Gd~l~a~a~vi~~Gr~ 111 (183)
.++..+....+.|+++|++|.+|||.++.++|.++++++.... +..++|+.+ .|+|++|++.||.|.++++|++.|++
T Consensus 8 ~~~~~~~~~~v~p~~~N~~g~lfGG~ll~~~D~~a~i~a~~~~-~~~~vtv~vd~i~F~~Pv~~Gd~l~~~a~V~~~g~s 86 (133)
T PRK10694 8 PQGELVLRTLAMPADTNANGDIFGGWLMSQMDIGGAILAKEIA-HGRVVTVRVEGMTFLRPVAVGDVVCCYARCVKTGTT 86 (133)
T ss_pred CCCceEEEEEcChhhcCCCCcEeHHHHHHHHHHHHHHHHHHHc-CCceEEEEECceEECCCcccCcEEEEEEEEEEccCc
Confidence 3566888889999999999999999999999999988886654 357999999 78999999999999999999999999
Q ss_pred EEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEEEecC
Q 030085 112 IQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLLCNLP 164 (183)
Q Consensus 112 ~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~~~p 164 (183)
...++++++.++. +.| ..++.++++.+..||. .+.
T Consensus 87 S~~v~v~v~~~~~-----~~~------------~~g~~~~~~~~~~tfV-avd 121 (133)
T PRK10694 87 SISINIEVWVKKV-----ASE------------PIGQRYKATEALFTYV-AVD 121 (133)
T ss_pred eEEEEEEEEEeec-----ccC------------CCCcEEEEEEEEEEEE-EEC
Confidence 9999999996311 000 0134578899999986 443
No 14
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=99.66 E-value=3.2e-15 Score=102.87 Aligned_cols=71 Identities=25% Similarity=0.399 Sum_probs=66.0
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhcCC-ceeEEEEEeEEEecCCCCCCEEEEEEEEEEeCCcEEEEEEEEEE
Q 030085 51 FKVLHGGVSALIAESLASMGAHMASGF-KRVAGVQLTINHLKSAELGDLVRAVATPINLGKTIQVWQVRLWK 121 (183)
Q Consensus 51 ~G~lHGG~~a~LaD~A~g~a~~~~~~~-~~~vTv~l~i~flrpa~~Gd~l~a~a~vi~~Gr~~~~~~v~i~~ 121 (183)
+|.+|||.+++++|.+++.++....+. ...++++++++|++|++.||.|++++++++.|++++++++++++
T Consensus 1 ~G~v~~g~~~~~~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~gd~l~~~~~v~~~g~~~~~~~~~v~~ 72 (79)
T PF03061_consen 1 NGIVHGGVYLSLFDEAASAALRSHGGDGRGVVTVELSIDFLRPVRPGDTLRVEARVVRVGRKSFTVEVEVYS 72 (79)
T ss_dssp TSSBCHHHHHHHHHHHHHHHHHHHHSSTEEEEEEEEEEEESS-BBTTSEEEEEEEEEEEESSEEEEEEEEEE
T ss_pred CCEEhHHHHHHHHHHHHHHHHHHhccCCcceEEEEEEEEEccccCCCeEEEEEEEEEEECCEEEEEEEEEEE
Confidence 599999999999999999888877654 67999999999999999999999999999999999999999999
No 15
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=99.64 E-value=3.8e-15 Score=107.04 Aligned_cols=85 Identities=14% Similarity=0.178 Sum_probs=76.8
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhcCCceeEEEEEeEEEecCCCCCCEEEEEEEEEEeCCcEEEEEEEEEEcccccCCCC
Q 030085 51 FKVLHGGVSALIAESLASMGAHMASGFKRVAGVQLTINHLKSAELGDLVRAVATPINLGKTIQVWQVRLWKVKEVQSDDG 130 (183)
Q Consensus 51 ~G~lHGG~~a~LaD~A~g~a~~~~~~~~~~vTv~l~i~flrpa~~Gd~l~a~a~vi~~Gr~~~~~~v~i~~~~~~~~~~~ 130 (183)
.|.+|||++++++|.+++.++....+....+|++++++|++|+..++.+.+++++++.||+++++++++|+
T Consensus 14 ~~~~hgg~la~l~D~a~~~~~~~~~~~~~~~t~~~~i~F~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~--------- 84 (99)
T cd00556 14 DRRVFGGQLAAQSDLAALRTVPRPHGASGFASLDHHIYFHRPGDADEWLLYEVESLRDGRSRALRRGRAYQ--------- 84 (99)
T ss_pred CHHHHHHHHHHHHHHHHHhhhhcccCCCCeeeeEEEEEEcCCCCCCccEEEEEEecccCCCceEEEEEEEC---------
Confidence 78999999999999998877654333346899999999999999988999999999999999999999998
Q ss_pred CCCCCCCCcCCCCCCCCCCcEEEEEEEEEE
Q 030085 131 RDHDADHHHHNNSTSSSSSIMISSSTVTLL 160 (183)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~ 160 (183)
++|++||+++.+++
T Consensus 85 ----------------~~G~lva~~~~~~~ 98 (99)
T cd00556 85 ----------------RDGKLVASATQSFL 98 (99)
T ss_pred ----------------CCCcEEEEEEEeEc
Confidence 67999999999986
No 16
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=99.59 E-value=5.7e-14 Score=113.73 Aligned_cols=106 Identities=20% Similarity=0.256 Sum_probs=92.2
Q ss_pred CCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhcCCceeEEEEE-eEEEecCCCCCCEEEEEEEEEEeCCcE
Q 030085 34 PERIIGCFRVTQNSCQPFKVLHGGVSALIAESLASMGAHMASGFKRVAGVQL-TINHLKSAELGDLVRAVATPINLGKTI 112 (183)
Q Consensus 34 ~g~v~~~m~v~~~~~Np~G~lHGG~~a~LaD~A~g~a~~~~~~~~~~vTv~l-~i~flrpa~~Gd~l~a~a~vi~~Gr~~ 112 (183)
.+....+.-+-|...|++|.+|||.+++++|.+++++|....+ .++||+.+ +|+|++|++.||.|.+.|+|.+.|||.
T Consensus 11 ~~~~~~~~lv~P~dtN~~g~ifGG~lm~~mD~~a~i~A~~~a~-~~vVTasvd~v~F~~Pv~vGd~v~~~a~v~~~GrTS 89 (157)
T COG1607 11 EGELVLRTLVMPSDTNPNGTIFGGWLLSWMDLAAAIAASRHAG-GRVVTASVDSVDFKKPVRVGDIVCLYARVVYTGRTS 89 (157)
T ss_pred CceeEEEEEecCCccCcccccccHHHHHHHHHHHHHHHHHHhC-CeEEEEEeceEEEccccccCcEEEEEEEEeecCccc
Confidence 4566788888999999999999999999999999888877665 48999999 699999999999999999999999999
Q ss_pred EEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEE
Q 030085 113 QVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLL 160 (183)
Q Consensus 113 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~ 160 (183)
..+.+++|.++.. ++.-..++.+..||.
T Consensus 90 m~V~Vev~~~~~~--------------------~~~~~~~t~~~ft~V 117 (157)
T COG1607 90 MEVGVEVWAEDIR--------------------SGERRLATSAYFTFV 117 (157)
T ss_pred EEEEEEEEEeccc--------------------CCcceEeeeEEEEEE
Confidence 9999999985331 144566788888887
No 17
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=99.46 E-value=4.2e-12 Score=104.46 Aligned_cols=104 Identities=16% Similarity=0.129 Sum_probs=90.4
Q ss_pred EEEEEeCC-EEEEEEEcCCCCc-CCCCcccHHHHHHHHHHHHHHHHHHhcCCceeEEEEEeEEEecCCCCCCEEEEEEEE
Q 030085 28 ELEELTPE-RIIGCFRVTQNSC-QPFKVLHGGVSALIAESLASMGAHMASGFKRVAGVQLTINHLKSAELGDLVRAVATP 105 (183)
Q Consensus 28 ~~~~~~~g-~v~~~m~v~~~~~-Np~G~lHGG~~a~LaD~A~g~a~~~~~~~~~~vTv~l~i~flrpa~~Gd~l~a~a~v 105 (183)
++.++++| ++++.+.++.++. |..|.+|||++++++|.++. ++ .++..+++...+++|++|+.+||+|++++++
T Consensus 76 ~i~eie~g~~a~~~k~Vt~ne~fn~~~i~hG~f~~aqa~~la~-~~---~~~~~~~~~i~~irF~kPV~pGD~L~~ea~v 151 (185)
T PRK04424 76 ELIDLELGRSAISILEITEEMVFSKTGIARGHHLFAQANSLAV-AV---IDAELALTGVANIRFKRPVKLGERVVAKAEV 151 (185)
T ss_pred eEEEecCCcEEEEEEecChhhccCCCCeecHHHHHHHHHHHHH-Hh---cCCcEEEEEeeeEEEccCCCCCCEEEEEEEE
Confidence 78888999 7999999999998 99999999999999998532 22 2445578888899999999999999999999
Q ss_pred EEeCCcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEEE
Q 030085 106 INLGKTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLLC 161 (183)
Q Consensus 106 i~~Gr~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~ 161 (183)
++.++++..+.++++. +|++++.|+.+++.
T Consensus 152 ~~~~~~~~~v~~~~~v--------------------------~g~~V~ege~~~~~ 181 (185)
T PRK04424 152 VRKKGNKYIVEVKSYV--------------------------GDELVFRGKFIMYR 181 (185)
T ss_pred EEccCCEEEEEEEEEE--------------------------CCEEEEEEEEEEEE
Confidence 9999999999999884 58999999999974
No 18
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=99.39 E-value=2.5e-11 Score=85.94 Aligned_cols=98 Identities=14% Similarity=0.174 Sum_probs=86.4
Q ss_pred EEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhc--------CCceeEEEEEeEEEecCCCCCCEEEEEEEEEEeCC
Q 030085 39 GCFRVTQNSCQPFKVLHGGVSALIAESLASMGAHMAS--------GFKRVAGVQLTINHLKSAELGDLVRAVATPINLGK 110 (183)
Q Consensus 39 ~~m~v~~~~~Np~G~lHGG~~a~LaD~A~g~a~~~~~--------~~~~~vTv~l~i~flrpa~~Gd~l~a~a~vi~~Gr 110 (183)
.++++.+.++|+.|.+|+|.++.++|.+....+.... .+...++.+++++|++|+..||.|.+++++.+.++
T Consensus 3 ~~~~v~~~d~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~v~~~~~~~~~ 82 (110)
T cd00586 3 LEIRVRFGDTDAAGHVNNARYLRYFEEAREEFLRELGLGYDELEEQGLGLVVVELEIDYLRPLRLGDRLTVETRVLRLGR 82 (110)
T ss_pred EEEEEEEhhcCCCCEEchhHHHHHHHHHHHHHHHHcCCCHHHHHhCCceEEEEEeEeeEcCccCCCCEEEEEEEEEecCc
Confidence 4678889999999999999999999999876655431 23467899999999999999999999999999999
Q ss_pred cEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEEE
Q 030085 111 TIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLLC 161 (183)
Q Consensus 111 ~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~ 161 (183)
+..+.++++++ ++|+++|.++.++.+
T Consensus 83 ~~~~~~~~~~~-------------------------~~g~~~a~~~~~~~~ 108 (110)
T cd00586 83 KSFTFEQEIFR-------------------------EDGELLATAETVLVC 108 (110)
T ss_pred EEEEEEEEEEC-------------------------CCCeEEEEEEEEEEE
Confidence 99999999997 569999999999874
No 19
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=99.18 E-value=3e-09 Score=69.92 Aligned_cols=96 Identities=18% Similarity=0.249 Sum_probs=82.5
Q ss_pred EEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhc-CCceeEEEEEeEEEecCCCCCCEEEEEEEEEEeCCcEEEEEE
Q 030085 39 GCFRVTQNSCQPFKVLHGGVSALIAESLASMGAHMAS-GFKRVAGVQLTINHLKSAELGDLVRAVATPINLGKTIQVWQV 117 (183)
Q Consensus 39 ~~m~v~~~~~Np~G~lHGG~~a~LaD~A~g~a~~~~~-~~~~~vTv~l~i~flrpa~~Gd~l~a~a~vi~~Gr~~~~~~v 117 (183)
..+++.+.+.+..+.+|||.+..++|.+....+.... .....+..+++++|++|+..|+.|.++.++...+++...+++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~ 82 (100)
T cd03440 3 LRLTVTPEDIDGGGIVHGGLLLALADEAAGAAAARLGGRGLGAVTLSLDVRFLRPVRPGDTLTVEAEVVRVGRSSVTVEV 82 (100)
T ss_pred EEEEeCHHHcCcCCccchHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeEEecCCCCCCEEEEEEEEEeccccEEEEEE
Confidence 4677888888999999999999999998766655432 135688999999999999999999999999999999999999
Q ss_pred EEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEE
Q 030085 118 RLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTL 159 (183)
Q Consensus 118 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~ 159 (183)
++++ .+|++++.+..++
T Consensus 83 ~~~~-------------------------~~~~~~~~~~~~~ 99 (100)
T cd03440 83 EVRN-------------------------EDGKLVATATATF 99 (100)
T ss_pred EEEC-------------------------CCCCEEEEEEEEe
Confidence 9997 5689999987765
No 20
>PLN02647 acyl-CoA thioesterase
Probab=99.16 E-value=1.1e-09 Score=101.11 Aligned_cols=113 Identities=12% Similarity=0.077 Sum_probs=92.5
Q ss_pred eCCEEEEEEEcCCCC------cCCCCcccHHHHHHHHHHHHHHHHHHhcCC-------ceeEEEEE-eEEEecCCCCCCE
Q 030085 33 TPERIIGCFRVTQNS------CQPFKVLHGGVSALIAESLASMGAHMASGF-------KRVAGVQL-TINHLKSAELGDL 98 (183)
Q Consensus 33 ~~g~v~~~m~v~~~~------~Np~G~lHGG~~a~LaD~A~g~a~~~~~~~-------~~~vTv~l-~i~flrpa~~Gd~ 98 (183)
.+-++.+.+++.++. .|+.|.+|||.++.++|.+++++|..+... ..+||+.+ +|+|++|+..|+.
T Consensus 84 ~~S~~~~~~~~~~d~~l~~~y~N~~G~l~gG~LLe~mD~~A~~~A~rh~~~~~~~~~p~~vVTAsVD~i~F~~Pi~~g~~ 163 (437)
T PLN02647 84 SQSRTSILYKFSSDFILREQYRNPWNEVRIGKLLEDLDALAGTISVKHCSDDDSTTRPLLLVTASVDKIVLKKPIRVDVD 163 (437)
T ss_pred ccceEEEEEecCCchhhchhhcCCCCcEeHhHHHHHHHHHHHHHHHHHhCCCcccCCcceEEEEEECcEEEcCCCcCCcE
Confidence 445788888655555 999999999999999999999999887643 16999999 7999999999999
Q ss_pred EEEEEEEEEeCCcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEEEec
Q 030085 99 VRAVATPINLGKTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLLCNL 163 (183)
Q Consensus 99 l~a~a~vi~~Gr~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~~~ 163 (183)
|.++|.|.+.||+...+.++++.+.. ...+++..+++++..||..+-
T Consensus 164 v~l~g~Vt~vGrSSMEV~v~V~~~~~------------------~~~~~~~~~~~~a~FtfVA~D 210 (437)
T PLN02647 164 LKIVGAVTWVGRSSMEIQLEVIQPTK------------------DESNTSDSVALTANFTFVARD 210 (437)
T ss_pred EEEEEEEEEecCCeEEEEEEEEEccc------------------cCCCCcEEEEEEEEEEEEEEc
Confidence 99999999999999999999997310 000134578999999987544
No 21
>PF09500 YiiD_Cterm: Putative thioesterase (yiiD_Cterm); InterPro: IPR012660 This entry consists of a broadly distributed uncharacterised domain found often as a standalone protein. The member from is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an N-terminal acetyltransferase domain (IPR000182 from INTERPRO). The function of these proteins are unknown. ; PDB: 1T82_C.
Probab=99.16 E-value=1.2e-09 Score=87.51 Aligned_cols=117 Identities=15% Similarity=0.099 Sum_probs=84.4
Q ss_pred CCCCchhhhcCCEEEEEeCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhcC----CceeEEEEEeEEEec
Q 030085 16 AVPDAPLKAIGFELEELTPERIIGCFRVTQNSCQPFKVLHGGVSALIAESLASMGAHMASG----FKRVAGVQLTINHLK 91 (183)
Q Consensus 16 ~~~~p~~~~Lg~~~~~~~~g~v~~~m~v~~~~~Np~G~lHGG~~a~LaD~A~g~a~~~~~~----~~~~vTv~l~i~flr 91 (183)
...-|+.++||+++.+.++++++++.|..++ .|..|+++||.+++++=.++...++.... ....|-.+-+|+|++
T Consensus 9 h~~IPls~~Mgi~v~~~~~~~l~~~APL~pN-~N~~~T~FgGSl~slatLaGW~lv~l~l~e~~~~~~IVi~~~~i~Y~~ 87 (144)
T PF09500_consen 9 HEHIPLSKAMGIKVTSYTGQRLELSAPLAPN-INHHGTMFGGSLYSLATLAGWGLVWLQLKEAGLNGDIVIADSNIRYLK 87 (144)
T ss_dssp HHH-HHHHHTT-EEEEEETTEEEEE--SGGG-B-TTSSB-HHHHHHHHHHHHHHHHHHHHHHHT---EEEEEEEEEEE-S
T ss_pred HHhCChhhhcCcEEEEEcCCEEEEeccCCCC-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeCceEEcC
Confidence 3557999999999999999999999999995 89999999999999998776544444432 256889999999999
Q ss_pred CCCCCCEEEEEEEEE-------------EeCCcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEE
Q 030085 92 SAELGDLVRAVATPI-------------NLGKTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVT 158 (183)
Q Consensus 92 pa~~Gd~l~a~a~vi-------------~~Gr~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T 158 (183)
|+. +| ++|+|+.- +.||--..++++|++ +|+++|..+++
T Consensus 88 Pv~-~d-~~A~~~~~~~~~~~~~~~~l~~~grari~l~~~i~~--------------------------~~~~~a~f~G~ 139 (144)
T PF09500_consen 88 PVT-GD-FTARCSLPEPEDWERFLQTLARGGRARITLEVEIYS--------------------------GGELAAEFTGR 139 (144)
T ss_dssp ----S---EEEEE-------S---GGGGCTS-EEEEEEEEEEE--------------------------TTEEEEEEEEE
T ss_pred CCC-CC-cEEEEeccccchhHHHHHHHHcCCcEEEEEEEEEEE--------------------------CCEEEEEEEEE
Confidence 999 63 88888876 567878888999996 57899999999
Q ss_pred EEE
Q 030085 159 LLC 161 (183)
Q Consensus 159 ~~~ 161 (183)
|.+
T Consensus 140 yv~ 142 (144)
T PF09500_consen 140 YVA 142 (144)
T ss_dssp EEE
T ss_pred EEE
Confidence 984
No 22
>PLN02647 acyl-CoA thioesterase
Probab=99.08 E-value=3.7e-09 Score=97.64 Aligned_cols=110 Identities=15% Similarity=0.120 Sum_probs=86.5
Q ss_pred EeCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhcCCceeEEEEE-eEEEecCCCCCCEEEEEEEEEEeCC
Q 030085 32 LTPERIIGCFRVTQNSCQPFKVLHGGVSALIAESLASMGAHMASGFKRVAGVQL-TINHLKSAELGDLVRAVATPINLGK 110 (183)
Q Consensus 32 ~~~g~v~~~m~v~~~~~Np~G~lHGG~~a~LaD~A~g~a~~~~~~~~~~vTv~l-~i~flrpa~~Gd~l~a~a~vi~~Gr 110 (183)
..+-++....-+.|.+.|.+|.+|||.++.++|.+++++|..+.+ ..++|+.+ .|+|++|+..|+.|.++|.|+..|+
T Consensus 286 m~dT~~~~~~iv~P~d~N~~g~iFGG~LM~~~De~A~i~A~r~a~-~~~vt~svd~v~F~~PV~vGdil~l~A~V~yt~~ 364 (437)
T PLN02647 286 IRDTRLENSLICQPQQRNIHGRIFGGFLMRRAFELAFSTAYAFAG-LRPYFLEVDHVDFLRPVDVGDFLRFKSCVLYTEL 364 (437)
T ss_pred ccccceEEEEEeCccccCCCCcEeHHHHHHHHHHHHHHHHHHHcC-CceEEEEecceEecCccccCcEEEEEEEEEEEeE
Confidence 344567778889999999999999999999999999888877654 57999999 6999999999999999999998775
Q ss_pred c-----EEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEEEe
Q 030085 111 T-----IQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLLCN 162 (183)
Q Consensus 111 ~-----~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~~ 162 (183)
+ ...+++.++-.+. .+..++++.++-.||.+.
T Consensus 365 ~s~g~~~i~veV~v~v~~~--------------------~~~~~~~~n~~~fTfva~ 401 (437)
T PLN02647 365 ENSEQPLINVEVVAHVTRP--------------------ELRSSEVSNTFYFTFTVR 401 (437)
T ss_pred EecCceEEEEEEEEEEEcC--------------------CCCcceEEEEEEEEEEEe
Confidence 4 4455555543110 113457888999998853
No 23
>PRK10800 acyl-CoA thioesterase YbgC; Provisional
Probab=98.84 E-value=4.9e-07 Score=68.74 Aligned_cols=103 Identities=13% Similarity=0.104 Sum_probs=85.7
Q ss_pred EEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhc--------CCceeEEEEEeEEEecCCCCCCEEEEEEEEEEeC
Q 030085 38 IGCFRVTQNSCQPFKVLHGGVSALIAESLASMGAHMAS--------GFKRVAGVQLTINHLKSAELGDLVRAVATPINLG 109 (183)
Q Consensus 38 ~~~m~v~~~~~Np~G~lHGG~~a~LaD~A~g~a~~~~~--------~~~~~vTv~l~i~flrpa~~Gd~l~a~a~vi~~G 109 (183)
..+.+++...+++.|.+|=+.+..+++.|......... .+...+.++++++|++|+..||.|.++.++.+.|
T Consensus 4 ~~~~~Vr~~d~D~~Ghv~~~~y~~~~e~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~~d~i~v~t~v~~~~ 83 (130)
T PRK10800 4 RWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALLAERVAFVVRKMTVEYYAPARLDDMLEVQSEITSMR 83 (130)
T ss_pred EEEEEEeehhcCCCCeEehHHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEEEEEEcCcccCCCEEEEEEEEEeeC
Confidence 45677888899999999999999999988654332221 1245788999999999999999999999999999
Q ss_pred CcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEEEecCC
Q 030085 110 KTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLLCNLPV 165 (183)
Q Consensus 110 r~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~~~p~ 165 (183)
++...+..++++ .+|+++|.+..++.+.-..
T Consensus 84 ~~s~~~~~~i~~-------------------------~~g~~~a~~~~~~v~~d~~ 114 (130)
T PRK10800 84 GTSLTFTQRIVN-------------------------AEGTLLNEAEVLIVCVDPL 114 (130)
T ss_pred cEEEEEEEEEEc-------------------------CCCeEEEEEEEEEEEEECC
Confidence 998888989997 6799999999999876443
No 24
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=98.83 E-value=6.2e-08 Score=80.94 Aligned_cols=82 Identities=18% Similarity=0.189 Sum_probs=64.0
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhcCCceeEEEEEeEEEecCCCCCCEEEEEEEEEEeCCcEEEEEEEEEEcccccCCCC
Q 030085 51 FKVLHGGVSALIAESLASMGAHMASGFKRVAGVQLTINHLKSAELGDLVRAVATPINLGKTIQVWQVRLWKVKEVQSDDG 130 (183)
Q Consensus 51 ~G~lHGG~~a~LaD~A~g~a~~~~~~~~~~vTv~l~i~flrpa~~Gd~l~a~a~vi~~Gr~~~~~~v~i~~~~~~~~~~~ 130 (183)
.+.+|||++++++=.|+ ....+........++++||+|+..| .++++++++|.||+++.++++++.
T Consensus 9 g~~~~GG~~a~~~~~A~----~~~~~~~~~~~~s~~~~fl~p~~~~-~~~~~v~~~r~Gr~~~~~~v~~~q--------- 74 (255)
T PF13622_consen 9 GRVVHGGYLAQLLAAAA----RTHAPPPGFDPHSLHVYFLRPVPPG-PVEYRVEVLRDGRSFSTRQVELSQ--------- 74 (255)
T ss_dssp TTCE-HHHHHHHHHHHH----HHCHTTTSSEEEEEEEEESS--BSC-EEEEEEEEEEESSSEEEEEEEEEE---------
T ss_pred CCcChhHHHHHHHHHHH----HHhccCCCCceEEEEeEeccccccC-CEEEEEEEeeCCCcEEEEEEEEEE---------
Confidence 67899998887776543 2222223478899999999999999 999999999999999999999995
Q ss_pred CCCCCCCCcCCCCCCCCCCcEEEEEEEEEEEec
Q 030085 131 RDHDADHHHHNNSTSSSSSIMISSSTVTLLCNL 163 (183)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~~~ 163 (183)
+|++++.++++|...-
T Consensus 75 -----------------~~~~~~~a~~~f~~~~ 90 (255)
T PF13622_consen 75 -----------------DGKVVATATASFGRPE 90 (255)
T ss_dssp -----------------TTEEEEEEEEEEE--T
T ss_pred -----------------CCcCEEEEEEEEccCc
Confidence 5889999999998443
No 25
>cd03445 Thioesterase_II_repeat2 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=98.81 E-value=8.1e-08 Score=70.92 Aligned_cols=80 Identities=14% Similarity=0.108 Sum_probs=67.3
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHhcCCceeEEEEEeEEEecCCCCCCEEEEEEEEEEeCCcEEEEEEEEEEcccccCCC
Q 030085 50 PFKVLHGGVSALIAESLASMGAHMASGFKRVAGVQLTINHLKSAELGDLVRAVATPINLGKTIQVWQVRLWKVKEVQSDD 129 (183)
Q Consensus 50 p~G~lHGG~~a~LaD~A~g~a~~~~~~~~~~vTv~l~i~flrpa~~Gd~l~a~a~vi~~Gr~~~~~~v~i~~~~~~~~~~ 129 (183)
+.+.+|||.+++++-.|+. ...+ .......++.+|++|+..+.++..+.++++.||+++..+++++.
T Consensus 14 ~~~~~~GG~l~a~a~~Aa~----~~~~-~~~~~~s~~~~Fl~p~~~~~pv~~~v~~lr~GRs~~~~~V~~~Q-------- 80 (94)
T cd03445 14 QGRGVFGGQVLAQALVAAA----RTVP-DDRVPHSLHSYFLRPGDPDQPIEYEVERLRDGRSFATRRVRAVQ-------- 80 (94)
T ss_pred CCCceEHHHHHHHHHHHHH----hhCC-CCCCeEEEEEEecCCCCCCCCEEEEEEEEECCCcEEEEEEEEEE--------
Confidence 5789999999999987643 2223 23557799999999999866899999999999999999999985
Q ss_pred CCCCCCCCCcCCCCCCCCCCcEEEEEEEEEE
Q 030085 130 GRDHDADHHHHNNSTSSSSSIMISSSTVTLL 160 (183)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~ 160 (183)
+|+++..++++|-
T Consensus 81 ------------------~g~~~~~a~~sf~ 93 (94)
T cd03445 81 ------------------NGKVIFTATASFQ 93 (94)
T ss_pred ------------------CCEEEEEEEEEEe
Confidence 5899999999884
No 26
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import o
Probab=98.79 E-value=4.3e-07 Score=67.91 Aligned_cols=100 Identities=15% Similarity=0.099 Sum_probs=82.5
Q ss_pred EEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhc--------C-CceeEEEEEeEEEecCCCCCCEEEEEEEEEEeC
Q 030085 39 GCFRVTQNSCQPFKVLHGGVSALIAESLASMGAHMAS--------G-FKRVAGVQLTINHLKSAELGDLVRAVATPINLG 109 (183)
Q Consensus 39 ~~m~v~~~~~Np~G~lHGG~~a~LaD~A~g~a~~~~~--------~-~~~~vTv~l~i~flrpa~~Gd~l~a~a~vi~~G 109 (183)
..+++....+++.|.+|.+.+..+++.+......... . +...+.++++++|++|++.||.|.+++++.+.|
T Consensus 3 ~~~~vr~~d~D~~Ghv~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~vv~~~~i~y~~~~~~gd~v~v~~~v~~~~ 82 (126)
T TIGR02799 3 WPIRVYYEDTDAGGVVYHANYLKFMERARTEWLRALGFEQSALLEETGLVFVVRSMELDYLKPARLDDLLTVTTRVVELK 82 (126)
T ss_pred ceEEEEEeccCCCceEEechHHHHHHHHHHHHHHHcCCCHHHHhhcCCcEEEEEEEEEEEcCcccCCCEEEEEEEEEecC
Confidence 4577888999999999999999999977543332211 1 234678899999999999999999999999999
Q ss_pred CcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEEEecC
Q 030085 110 KTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLLCNLP 164 (183)
Q Consensus 110 r~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~~~p 164 (183)
++...++.++++ +|+++|.+..++.+.-+
T Consensus 83 ~~~~~~~~~i~~--------------------------~g~~~a~~~~~~v~vd~ 111 (126)
T TIGR02799 83 GASLVFAQEVRR--------------------------GDTLLCEATVEVACVDA 111 (126)
T ss_pred ceEEEEEEEEEe--------------------------CCEEEEEEEEEEEEEEC
Confidence 999999999995 47899999999876544
No 27
>KOG4781 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=6.7e-08 Score=82.68 Aligned_cols=89 Identities=15% Similarity=0.059 Sum_probs=76.7
Q ss_pred eCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhcCCceeEEEEEeEEEecCCCCCCEEEEEEEEEEeCCcE
Q 030085 33 TPERIIGCFRVTQNSCQPFKVLHGGVSALIAESLASMGAHMASGFKRVAGVQLTINHLKSAELGDLVRAVATPINLGKTI 112 (183)
Q Consensus 33 ~~g~v~~~m~v~~~~~Np~G~lHGG~~a~LaD~A~g~a~~~~~~~~~~vTv~l~i~flrpa~~Gd~l~a~a~vi~~Gr~~ 112 (183)
..+..++-+......+++-|.+|||++||++|.+.++++....+.+..+|.+|+++|-+|+.....+.+++.+.+.-.|-
T Consensus 123 s~~e~v~i~h~G~~L~gy~~~iHgG~IATllde~L~~c~fl~~pnk~~vTanLsisy~~pip~~~f~vi~t~~~~~~Grk 202 (237)
T KOG4781|consen 123 SHREMVVIFHLGKDLTGYPGLVHGGAIATLLDEALAMCAFLALPNKIGVTANLSISYKRPIPTNHFVVIRTQLDKVEGRK 202 (237)
T ss_pred CCCeEEEEEeccccccCCCCccchHHHHHHHHHHHHHhhcccCCchhheeeecccccCCCcccceEEEEecchhhhcCcc
Confidence 35678888999999999999999999999999999999988777789999999999999999998888999988775544
Q ss_pred EEEEEEEEE
Q 030085 113 QVWQVRLWK 121 (183)
Q Consensus 113 ~~~~v~i~~ 121 (183)
+-..+++..
T Consensus 203 ~~~~g~l~~ 211 (237)
T KOG4781|consen 203 CKTFGELNV 211 (237)
T ss_pred cceeeEEEE
Confidence 555555554
No 28
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=98.66 E-value=1e-06 Score=65.69 Aligned_cols=81 Identities=12% Similarity=0.102 Sum_probs=66.0
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhcCCceeEEEEEeEEEecCCCCCCEEEEEEEEEEeCC--cEEEEEEEEEEcccccCC
Q 030085 51 FKVLHGGVSALIAESLASMGAHMASGFKRVAGVQLTINHLKSAELGDLVRAVATPINLGK--TIQVWQVRLWKVKEVQSD 128 (183)
Q Consensus 51 ~G~lHGG~~a~LaD~A~g~a~~~~~~~~~~vTv~l~i~flrpa~~Gd~l~a~a~vi~~Gr--~~~~~~v~i~~~~~~~~~ 128 (183)
.-.+||..++++++.+++. ..++...+....+++|++|+..||+|+++++++.... .+..+++++++
T Consensus 45 ~~i~~g~~~~~~~~~~~~~----~~~g~~~~~~~~~~~f~~Pv~~gd~l~~~~~v~~~~~~~~~v~~~~~~~~------- 113 (128)
T cd03449 45 GRIAHGMLTASLISAVLGT----LLPGPGTIYLSQSLRFLRPVFIGDTVTATVTVTEKREDKKRVTLETVCTN------- 113 (128)
T ss_pred CceecHHHHHHHHHHHHhc----cCCCceEEEEEEEEEECCCccCCCEEEEEEEEEEEecCCCEEEEEEEEEe-------
Confidence 4599999999998765321 2233456677889999999999999999999997655 78889999998
Q ss_pred CCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEE
Q 030085 129 DGRDHDADHHHHNNSTSSSSSIMISSSTVTLL 160 (183)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~ 160 (183)
++|++++.++.+.+
T Consensus 114 ------------------~~g~~v~~g~~~~~ 127 (128)
T cd03449 114 ------------------QNGEVVIEGEAVVL 127 (128)
T ss_pred ------------------CCCCEEEEEEEEEe
Confidence 67999999999876
No 29
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=98.65 E-value=2.9e-06 Score=66.41 Aligned_cols=104 Identities=15% Similarity=0.130 Sum_probs=87.7
Q ss_pred EEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHh-c-------CCceeEEEEEeEEEecCCCCCCEEEEEEEEEE
Q 030085 36 RIIGCFRVTQNSCQPFKVLHGGVSALIAESLASMGAHMA-S-------GFKRVAGVQLTINHLKSAELGDLVRAVATPIN 107 (183)
Q Consensus 36 ~v~~~m~v~~~~~Np~G~lHGG~~a~LaD~A~g~a~~~~-~-------~~~~~vTv~l~i~flrpa~~Gd~l~a~a~vi~ 107 (183)
.....+++....++.+|.+|=+....+.|.|-.--.... . .+...+.++++++|++|++.||.++++.++.+
T Consensus 5 ~~~~~~~V~~~d~D~~GhV~~a~Yl~~fE~ar~~~l~~~g~~~~~~~~~~~~~~v~~~~i~y~~p~~~~d~l~v~~~v~~ 84 (137)
T COG0824 5 PFSTPIRVRYEDTDAMGHVNNANYLVFFEEARTEFLRALGFDYADLEEGGIAFVVVEAEIDYLRPARLGDVLTVRTRVEE 84 (137)
T ss_pred ceEEEEEEEhhhcCcccEEecchHHHHHHHHHHHHHHHcCCCHHHHhhCCcEEEEEEEEeEECCCccCCCEEEEEEEEEe
Confidence 456778888999999999999999999999854333221 0 11348999999999999999999999999999
Q ss_pred eCCcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEEEecCC
Q 030085 108 LGKTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLLCNLPV 165 (183)
Q Consensus 108 ~Gr~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~~~p~ 165 (183)
.|++...++-+|++ ++ +++|+|+.+..|+-+.
T Consensus 85 ~~~~s~~~~~~i~~-------------------------~~-~l~a~~~~~~V~v~~~ 116 (137)
T COG0824 85 LGGKSLTLGYEIVN-------------------------ED-ELLATGETTLVCVDLK 116 (137)
T ss_pred ecCeEEEEEEEEEe-------------------------CC-EEEEEEEEEEEEEECC
Confidence 99999999999998 44 9999999999987654
No 30
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=98.58 E-value=1.9e-06 Score=63.03 Aligned_cols=81 Identities=14% Similarity=0.044 Sum_probs=67.7
Q ss_pred EEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHh--------cCCceeEEEEEeEEEecCCCCCCEEEEEEEEEEeCCcE
Q 030085 41 FRVTQNSCQPFKVLHGGVSALIAESLASMGAHMA--------SGFKRVAGVQLTINHLKSAELGDLVRAVATPINLGKTI 112 (183)
Q Consensus 41 m~v~~~~~Np~G~lHGG~~a~LaD~A~g~a~~~~--------~~~~~~vTv~l~i~flrpa~~Gd~l~a~a~vi~~Gr~~ 112 (183)
+.+....+++.|.+|-+.++.+++.+...-.... ..+...+.++++++|++|++.||.|.++.++.+.|++.
T Consensus 2 ~~V~~~d~D~~G~v~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~gd~v~v~~~~~~~~~~s 81 (117)
T TIGR00051 2 VRVYYEDTDAQGIVYHANYLRYCERARTEFLRSLGFPQSVLRAEGVAFVVVNINIEYKKPARLDDVLEIRTQIEELNGFS 81 (117)
T ss_pred EEEEEeccCCCcEEEehHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEEEEEECCcccCCCEEEEEEEEEecCcEE
Confidence 4567788999999999999999998854332221 11234689999999999999999999999999999999
Q ss_pred EEEEEEEEE
Q 030085 113 QVWQVRLWK 121 (183)
Q Consensus 113 ~~~~v~i~~ 121 (183)
..++.++++
T Consensus 82 ~~~~~~i~~ 90 (117)
T TIGR00051 82 FVFSQEIFN 90 (117)
T ss_pred EEEEEEEEe
Confidence 999999998
No 31
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.33 E-value=1.2e-05 Score=74.90 Aligned_cols=105 Identities=10% Similarity=-0.021 Sum_probs=87.7
Q ss_pred CEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhc-------CCceeEEEEEeEEEecCCCCCCEEEEEEEEEE
Q 030085 35 ERIIGCFRVTQNSCQPFKVLHGGVSALIAESLASMGAHMAS-------GFKRVAGVQLTINHLKSAELGDLVRAVATPIN 107 (183)
Q Consensus 35 g~v~~~m~v~~~~~Np~G~lHGG~~a~LaD~A~g~a~~~~~-------~~~~~vTv~l~i~flrpa~~Gd~l~a~a~vi~ 107 (183)
-..+.++++.+.+++++|.++=+.+..++|.+..-...... .+...+.++.+|+|++|++.||.|.++.++.+
T Consensus 344 ~~~~~~~~V~~~~~D~~Ghvnn~~Yl~~~e~Ar~~~~~~~G~~~~~~~~~~~~vvv~~~i~y~rp~~~gD~v~I~t~v~~ 423 (495)
T PRK07531 344 PLRLVETKVPPAWVDYNGHMTEHRYLQVFGDTTDALLRLIGVDAAYVAAGHSYYTVETHIRHLGEAKAGQALHVETQLLS 423 (495)
T ss_pred ceEEEeEEECHHHcCCCCeEcHHHHHHHHHHHHHHHHHHcCCCHHHHhcCCcEEEEEEEEEEcccCCCCCEEEEEEEEEe
Confidence 34577899999999999999999999999987543222211 12345789999999999999999999999999
Q ss_pred eCCcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEEEecC
Q 030085 108 LGKTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLLCNLP 164 (183)
Q Consensus 108 ~Gr~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~~~p 164 (183)
.|++...++.++++ ++|+++|.+..++.+.-.
T Consensus 424 ~~~~s~~~~~~i~~-------------------------~~g~l~A~g~~~~v~vD~ 455 (495)
T PRK07531 424 GDEKRLHLFHTLYD-------------------------AGGELIATAEHMLLHVDL 455 (495)
T ss_pred cCCcEEEEEEEEEC-------------------------CCCcEEEEEEEEEEEEEC
Confidence 99999999999997 678999999999887553
No 32
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=98.32 E-value=4.7e-06 Score=70.83 Aligned_cols=78 Identities=10% Similarity=0.042 Sum_probs=63.6
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhcCCceeEEEEEeEEEecCCCCCCEEEEEEEEEEeCCcEEEEEEEEEEcccccCCCCC
Q 030085 52 KVLHGGVSALIAESLASMGAHMASGFKRVAGVQLTINHLKSAELGDLVRAVATPINLGKTIQVWQVRLWKVKEVQSDDGR 131 (183)
Q Consensus 52 G~lHGG~~a~LaD~A~g~a~~~~~~~~~~vTv~l~i~flrpa~~Gd~l~a~a~vi~~Gr~~~~~~v~i~~~~~~~~~~~~ 131 (183)
+.++||.+++++=.|+ ..+ .+. ...-.+++++|++|+..+..|..+.+++|.||+++..+++++.
T Consensus 21 ~~~fGG~~~Aqal~Aa---~~t-v~~-~~~~~S~h~~Fl~~~~~~~pv~~~V~~lR~GRs~~~r~V~~~Q---------- 85 (271)
T TIGR00189 21 NRVFGGQVVGQALAAA---SKT-VPE-EFIPHSLHSYFVRAGDPKKPIIYDVERLRDGRSFITRRVKAVQ---------- 85 (271)
T ss_pred CceEccHHHHHHHHHH---Hhc-CCC-CCCcceeEEEecCCCCCCCCEEEEEEEeeCCCceEEEEEEEEE----------
Confidence 5899999999875432 222 232 2333479999999999988899999999999999999999984
Q ss_pred CCCCCCCcCCCCCCCCCCcEEEEEEEEEE
Q 030085 132 DHDADHHHHNNSTSSSSSIMISSSTVTLL 160 (183)
Q Consensus 132 ~~~~~~~~~~~~~~~~~g~lvA~~t~T~~ 160 (183)
+|++|.+++++|.
T Consensus 86 ----------------~g~~~~~a~asf~ 98 (271)
T TIGR00189 86 ----------------HGKTIFTLQASFQ 98 (271)
T ss_pred ----------------CCEEEEEEEEEcc
Confidence 5899999999986
No 33
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=98.30 E-value=9.8e-05 Score=54.81 Aligned_cols=96 Identities=6% Similarity=-0.017 Sum_probs=71.4
Q ss_pred CCCCcCCCCcccHHHHHHHHHHHHHHHHHH-----hc--CCceeEEEEEeEEEecCCCCCCEEEEEEEEEEeCCcEEEEE
Q 030085 44 TQNSCQPFKVLHGGVSALIAESLASMGAHM-----AS--GFKRVAGVQLTINHLKSAELGDLVRAVATPINLGKTIQVWQ 116 (183)
Q Consensus 44 ~~~~~Np~G~lHGG~~a~LaD~A~g~a~~~-----~~--~~~~~vTv~l~i~flrpa~~Gd~l~a~a~vi~~Gr~~~~~~ 116 (183)
++..++ +|.+|=+....++|.|-.--... .. .+...+.++.+++|++|++.||.+.++.++.+.|++...++
T Consensus 2 r~~D~D-~ghv~n~~Y~~~~e~ar~~~~~~~g~~~~~~~~~~~~~v~~~~i~y~~~~~~~d~~~v~~~~~~~~~~s~~~~ 80 (121)
T PF13279_consen 2 RWSDTD-NGHVNNARYLRYFEEAREEFLEELGLYDELQGQGIGFVVAESEIDYLRPLRFGDRLEVETRVEEIGGKSFRFE 80 (121)
T ss_dssp -GGGB--TSSB-HHHHHHHHHHHHHHHHHHHTSCHHHTTTTEEEEEEEEEEEE-S--BTTSEEEEEEEEEEEESSEEEEE
T ss_pred CHHHcc-CCeEcHHHHHHHHHHHHHHHHHhcchhhHHHhcCceEEEEEEEEEEcccccCCCEEEEEEEEEEECCcEEEEE
Confidence 456688 99999999999999874332211 11 13478999999999999999999999999999999999999
Q ss_pred EEEEEcccccCCCCCCCCCCCCcCCCCCCCCCC--cEEEEEEEEEEEecC
Q 030085 117 VRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSS--IMISSSTVTLLCNLP 164 (183)
Q Consensus 117 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~lvA~~t~T~~~~~p 164 (183)
.++++. .+| +++|.++.++.+.-.
T Consensus 81 ~~i~~~------------------------~~g~~~~~a~~~~~~v~~d~ 106 (121)
T PF13279_consen 81 QEIFRP------------------------ADGKGELAATGRTVMVFVDY 106 (121)
T ss_dssp EEEEEC------------------------STTEEEEEEEEEEEEEEEET
T ss_pred EEEEEc------------------------CCCceEEEEEEEEEEEEEeC
Confidence 999972 244 559999999886544
No 34
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=98.30 E-value=0.00012 Score=54.87 Aligned_cols=108 Identities=16% Similarity=0.122 Sum_probs=77.8
Q ss_pred EEEEEeC-CEEEEEEEcCCCC--cCC----CCcccHHHHHHHHHHHHHHHHHHhc---CCceeEEEEE-eEEEecCCCCC
Q 030085 28 ELEELTP-ERIIGCFRVTQNS--CQP----FKVLHGGVSALIAESLASMGAHMAS---GFKRVAGVQL-TINHLKSAELG 96 (183)
Q Consensus 28 ~~~~~~~-g~v~~~m~v~~~~--~Np----~G~lHGG~~a~LaD~A~g~a~~~~~---~~~~~vTv~l-~i~flrpa~~G 96 (183)
++.++++ +.++....+.+++ ... ...++|=++.-++.-++++...... .+.......+ ++.|.+|+.+|
T Consensus 12 ~i~~~~~~~~~~~~~~v~~d~~~~~~hf~~~pi~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~pv~pg 91 (131)
T cd01288 12 RVLELEPGKSIVAIKNVTINEPFFQGHFPGNPIMPGVLIIEALAQAAGILGLKSLEDFEGKLVYFAGIDKARFRKPVVPG 91 (131)
T ss_pred EEEEEcCCCEEEEEEEecCCChhhcCCCCCCCcCCchHHHHHHHHHHHHHhhhcccccCCcEEEEeeecccEEccccCCC
Confidence 4556664 6788888877764 221 2677876665555555544432211 2234444554 79999999999
Q ss_pred CEEEEEEEEEEeCCcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEEE
Q 030085 97 DLVRAVATPINLGKTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLLC 161 (183)
Q Consensus 97 d~l~a~a~vi~~Gr~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~ 161 (183)
|+|++++++++.+++...++++++. +|+++++++.+++.
T Consensus 92 d~l~i~~~v~~~~~~~~~~~~~~~~--------------------------~g~~v~~~~~~~~~ 130 (131)
T cd01288 92 DQLILEVELLKLRRGIGKFKGKAYV--------------------------DGKLVAEAELMFAI 130 (131)
T ss_pred CEEEEEEEEEEeeCCEEEEEEEEEE--------------------------CCEEEEEEEEEEEE
Confidence 9999999999999999999999974 58999999999873
No 35
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=98.22 E-value=0.00022 Score=55.48 Aligned_cols=108 Identities=16% Similarity=0.090 Sum_probs=75.4
Q ss_pred EEEEEeC-CEEEEEEEcCCCCc--C----CCCcccHHHHHHHHHHHHHHHHHHhc--CCceeEEEEE-eEEEecCCCCCC
Q 030085 28 ELEELTP-ERIIGCFRVTQNSC--Q----PFKVLHGGVSALIAESLASMGAHMAS--GFKRVAGVQL-TINHLKSAELGD 97 (183)
Q Consensus 28 ~~~~~~~-g~v~~~m~v~~~~~--N----p~G~lHGG~~a~LaD~A~g~a~~~~~--~~~~~vTv~l-~i~flrpa~~Gd 97 (183)
++.++++ ++++....+..++. . ....++|=.+.-++--++++.+.... .+.....+.+ ++.|++|+.+||
T Consensus 27 ~i~~~~~~~~~~~~~~v~~d~~~~~ghfp~~pi~PG~l~iE~~aQ~~~~~~~~~~~~~~~~~~l~gi~~~kF~~pv~pGd 106 (147)
T PRK00006 27 RVLELEPGKSIVAIKNVTINEPFFQGHFPGYPVMPGVLIIEAMAQAAGVLALKSEENKGKLVYFAGIDKARFKRPVVPGD 106 (147)
T ss_pred EEEEEcCCCEEEEEEEecCCCccccCCCcCCCcCchhHHHHHHHHHHHHHHhcCcCcCCcEEEEeeeeEEEEccccCCCC
Confidence 4556665 67888888877652 2 13457775554334444333222211 1223334444 799999999999
Q ss_pred EEEEEEEEEEeCCcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEEE
Q 030085 98 LVRAVATPINLGKTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLLC 161 (183)
Q Consensus 98 ~l~a~a~vi~~Gr~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~ 161 (183)
+|++++++....+.+..++++++. +|++++.++.++++
T Consensus 107 ~l~i~~~i~~~~~~~v~~~~~~~~--------------------------~g~~v~~~~~~~~~ 144 (147)
T PRK00006 107 QLILEVELLKQRRGIWKFKGVATV--------------------------DGKLVAEAELMFAI 144 (147)
T ss_pred EEEEEEEEEEeeCCEEEEEEEEEE--------------------------CCEEEEEEEEEEEE
Confidence 999999999999999999999974 58999999999984
No 36
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=97.96 E-value=0.0002 Score=52.94 Aligned_cols=81 Identities=12% Similarity=0.063 Sum_probs=62.4
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHhcCC-ceeEEEEEeEEEecCCCCCCEEEEEEEEEEeC----CcEEEEEEEEEEccc
Q 030085 50 PFKVLHGGVSALIAESLASMGAHMASGF-KRVAGVQLTINHLKSAELGDLVRAVATPINLG----KTIQVWQVRLWKVKE 124 (183)
Q Consensus 50 p~G~lHGG~~a~LaD~A~g~a~~~~~~~-~~~vTv~l~i~flrpa~~Gd~l~a~a~vi~~G----r~~~~~~v~i~~~~~ 124 (183)
+.-.+||..+++++..+.... .+. ........++.|.+|+..||+|++++++...- +.+..+++++.+
T Consensus 41 ~~~i~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~f~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n--- 113 (127)
T cd03441 41 GGRIAHGMLTLSLASGLLVQW----LPGTDGANLGSQSVRFLAPVFPGDTLRVEVEVLGKRPSKGRGVVTVRTEARN--- 113 (127)
T ss_pred CCceechHHHHHHHHhhhhhh----ccCcccceeEEeEEEEeCCcCCCCEEEEEEEEEEeeccCCCcEEEEEEEEEe---
Confidence 456899999999988764321 222 34667788999999999999999999999763 357788888887
Q ss_pred ccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEE
Q 030085 125 VQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTL 159 (183)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~ 159 (183)
++|+++..++.+.
T Consensus 114 ----------------------~~g~~v~~g~~~~ 126 (127)
T cd03441 114 ----------------------QGGEVVLSGEATV 126 (127)
T ss_pred ----------------------CCCCEEEEEEEEe
Confidence 6788888777653
No 37
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=97.92 E-value=0.00015 Score=63.23 Aligned_cols=103 Identities=12% Similarity=0.038 Sum_probs=76.7
Q ss_pred chhhhcCCEEEEEeCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhcCCceeEEEEEeEEEecCCCCCCEE
Q 030085 20 APLKAIGFELEELTPERIIGCFRVTQNSCQPFKVLHGGVSALIAESLASMGAHMASGFKRVAGVQLTINHLKSAELGDLV 99 (183)
Q Consensus 20 p~~~~Lg~~~~~~~~g~v~~~m~v~~~~~Np~G~lHGG~~a~LaD~A~g~a~~~~~~~~~~vTv~l~i~flrpa~~Gd~l 99 (183)
.|.+.|.+ +.++++..+..-+ -.....++||.+++.+=.|+ ..+ .+ ....--++++.||+|+..+.+|
T Consensus 7 ~l~~~l~l--~~~~~~~f~g~~~-----~~~~r~~fGGqv~AQal~AA---~~t-v~-~~~~~hSlh~~Fl~pg~~~~pi 74 (286)
T PRK10526 7 NLLTLLNL--EKIEEGLFRGQSE-----DLGLRQVFGGQVVGQALYAA---KET-VP-EERLVHSFHSYFLRPGDSQKPI 74 (286)
T ss_pred HHHHhcCc--EEccCCeEECcCC-----CCCCCceechHHHHHHHHHH---Hhc-CC-CCCCceEEEEEcCCCCCCCCCE
Confidence 46666544 4666665554422 13357899999998875432 222 22 2245568999999999988889
Q ss_pred EEEEEEEEeCCcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEE
Q 030085 100 RAVATPINLGKTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLL 160 (183)
Q Consensus 100 ~a~a~vi~~Gr~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~ 160 (183)
..+.+.+|.||+.+..+|+++. +|++|.++++.|.
T Consensus 75 ~y~Ve~lRdGRSfstr~V~a~Q--------------------------~g~~if~~~~sF~ 109 (286)
T PRK10526 75 IYDVETLRDGNSFSARRVAAIQ--------------------------NGKPIFYMTASFQ 109 (286)
T ss_pred EEEEEEEeCCCceEeEEEEEEE--------------------------CCEEEEEEEEEec
Confidence 9999999999999999999994 6899999999986
No 38
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=97.90 E-value=0.00033 Score=52.93 Aligned_cols=77 Identities=12% Similarity=0.022 Sum_probs=57.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCceeEEEEEeEEEecCCCCCCEEEEEEEEEEeCCc-EEEEEEEEEEcccccCCCCC
Q 030085 53 VLHGGVSALIAESLASMGAHMASGFKRVAGVQLTINHLKSAELGDLVRAVATPINLGKT-IQVWQVRLWKVKEVQSDDGR 131 (183)
Q Consensus 53 ~lHGG~~a~LaD~A~g~a~~~~~~~~~~vTv~l~i~flrpa~~Gd~l~a~a~vi~~Gr~-~~~~~v~i~~~~~~~~~~~~ 131 (183)
.+||...++++..+.. ...+ ....-..++++|++|+..||+|+++++|...... +..+++++.|
T Consensus 45 ia~G~~~~~~~~~~~~----~~~~-~~~~~~~~~~rf~~pv~~Gdtl~~~~~v~~~~~~~~v~~~~~~~n---------- 109 (123)
T cd03455 45 YVNGPTLAGLVIRYVT----DWAG-PDARVKSFAFRLGAPLYAGDTLRFGGRVTAKRDDEVVTVELWARN---------- 109 (123)
T ss_pred EEEHHHHHHHHHHHHH----HccC-CcceEEEEEEEeeccccCCCEEEEEEEEEeeccCcEEEEEEEEEc----------
Confidence 5899999999876532 1122 1234456799999999999999999999854222 7777888887
Q ss_pred CCCCCCCcCCCCCCCCCCcEEEEEEEEE
Q 030085 132 DHDADHHHHNNSTSSSSSIMISSSTVTL 159 (183)
Q Consensus 132 ~~~~~~~~~~~~~~~~~g~lvA~~t~T~ 159 (183)
++|+++..++++.
T Consensus 110 ---------------q~G~~v~~g~a~v 122 (123)
T cd03455 110 ---------------SEGDHVMAGTATV 122 (123)
T ss_pred ---------------CCCCEEEeEEEEE
Confidence 7899999998875
No 39
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=97.82 E-value=0.00075 Score=51.33 Aligned_cols=78 Identities=12% Similarity=0.046 Sum_probs=57.8
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhcCCceeEEEEEeEEEecCCCCCCEEEEEEEEEE----eCCcEEEEEEEEEEcccccC
Q 030085 52 KVLHGGVSALIAESLASMGAHMASGFKRVAGVQLTINHLKSAELGDLVRAVATPIN----LGKTIQVWQVRLWKVKEVQS 127 (183)
Q Consensus 52 G~lHGG~~a~LaD~A~g~a~~~~~~~~~~vTv~l~i~flrpa~~Gd~l~a~a~vi~----~Gr~~~~~~v~i~~~~~~~~ 127 (183)
=.+||-.+++++..+. .. ..+.. ..-+++.+.|++|+.+||+|+++++|+. .|+.+..++++++|
T Consensus 45 ~i~~G~~~~~~~~~~~---~~-~~~~~-~~i~~~~~rf~~Pv~~Gdtl~~~~~v~~~~~~~~~~~v~~~~~~~n------ 113 (127)
T cd03453 45 VIAHGMLTMGLLGRLV---TD-WVGDP-GRVVSFGVRFTKPVPVPDTLTCTGIVVEKTVADGEDALTVTVDATD------ 113 (127)
T ss_pred cEecHHHHHHHHHHHH---HH-HcCCc-cceEEEEEEECCcCcCCCEEEEEEEEEEEEecCCCcEEEEEEEEEE------
Confidence 3789999888885432 11 22321 1225778999999999999999999974 25678889999998
Q ss_pred CCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEE
Q 030085 128 DDGRDHDADHHHHNNSTSSSSSIMISSSTVTL 159 (183)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~ 159 (183)
++|+++..++++.
T Consensus 114 -------------------q~g~~v~~g~a~v 126 (127)
T cd03453 114 -------------------QAGGKKVLGRAIV 126 (127)
T ss_pred -------------------cCCCEEEEEEEEE
Confidence 6788888887654
No 40
>PLN02868 acyl-CoA thioesterase family protein
Probab=97.81 E-value=0.00016 Score=65.69 Aligned_cols=105 Identities=14% Similarity=0.031 Sum_probs=75.5
Q ss_pred chhhhcCCEEEEEeCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhcCCceeEEEEEeEEEecCCCCCCEE
Q 030085 20 APLKAIGFELEELTPERIIGCFRVTQNSCQPFKVLHGGVSALIAESLASMGAHMASGFKRVAGVQLTINHLKSAELGDLV 99 (183)
Q Consensus 20 p~~~~Lg~~~~~~~~g~v~~~m~v~~~~~Np~G~lHGG~~a~LaD~A~g~a~~~~~~~~~~vTv~l~i~flrpa~~Gd~l 99 (183)
.+.+.+. ++.++++.-+...+... ...+.++||.+++++=.| +....+. ...-..+++.||+|+..+.++
T Consensus 131 ~l~~~~~--l~~~~~~~f~~~~~~~~---~~~~~~fGG~~~aqal~A----a~~~~~~-~~~~~s~~~~Fl~~~~~~~pv 200 (413)
T PLN02868 131 LVERILH--LEPLEVDIFRGITLPDA---PTFGKVFGGQLVGQALAA----ASKTVDP-LKLVHSLHAYFLLVGDINLPI 200 (413)
T ss_pred HHHhhcC--cEeccCCeEECCcCCCC---cccccccchHHHHHHHHH----HHccCCC-CCCceEeeeeecCCCCCCCCE
Confidence 4455554 44666766555543221 235789999999985433 2222222 234568899999999886689
Q ss_pred EEEEEEEEeCCcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEE
Q 030085 100 RAVATPINLGKTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLL 160 (183)
Q Consensus 100 ~a~a~vi~~Gr~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~ 160 (183)
..+.+++|.||+.+..+|+++. +|+++.+++++|.
T Consensus 201 ~~~V~~lr~Grs~~~r~v~~~Q--------------------------~g~~~~~~~~sf~ 235 (413)
T PLN02868 201 IYQVERIRDGHNFATRRVDAIQ--------------------------KGKVIFTLFASFQ 235 (413)
T ss_pred EEEEEEEcCCCceEeeEEEEEE--------------------------CCeeEEEEeeccc
Confidence 9999999999999999999984 5899999998875
No 41
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=97.80 E-value=0.002 Score=49.59 Aligned_cols=107 Identities=19% Similarity=0.125 Sum_probs=71.5
Q ss_pred EEEEEe-CCEEEEEEEcCCCCc--C---CCCcccHHHHH--HHHHHHHHHHHHHhc--CC--ceeEEEEE-eEEEecCCC
Q 030085 28 ELEELT-PERIIGCFRVTQNSC--Q---PFKVLHGGVSA--LIAESLASMGAHMAS--GF--KRVAGVQL-TINHLKSAE 94 (183)
Q Consensus 28 ~~~~~~-~g~v~~~m~v~~~~~--N---p~G~lHGG~~a--~LaD~A~g~a~~~~~--~~--~~~vTv~l-~i~flrpa~ 94 (183)
++.+++ +++++.+..+++++- . |..-+-=|++. +++-.++.++..... .. .......+ ++.|.+|+.
T Consensus 20 ~i~~~~~~~~~~~~~~v~~~~~~f~gHFp~~pv~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kF~~~v~ 99 (140)
T TIGR01750 20 RILELDPGKRIVAIKNVTINEPFFQGHFPEKPIMPGVLIVEALAQAGGVLAILSLGGEIGKGKLVYFAGIDKAKFRRPVV 99 (140)
T ss_pred EEEEEcCCCEEEEEEEcCCCCCeecCCCcCcCcChHHHHHHHHHHHHHHHheccccccCCCCcEEEEeecceeEECCccC
Confidence 566667 478999998888752 2 11122334332 233333322211111 11 23445555 899999999
Q ss_pred CCCEEEEEEEEEEeCCcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEE
Q 030085 95 LGDLVRAVATPINLGKTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLL 160 (183)
Q Consensus 95 ~Gd~l~a~a~vi~~Gr~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~ 160 (183)
+||+|++++++.+..+.+..++++++ .+|+++|.++.+++
T Consensus 100 pGd~l~i~~~i~~~~~~~~~~~~~~~--------------------------~~g~~va~~~~~~~ 139 (140)
T TIGR01750 100 PGDQLILHAEFLKKRRKIGKFKGEAT--------------------------VDGKVVAEAEITFA 139 (140)
T ss_pred CCCEEEEEEEEEEccCCEEEEEEEEE--------------------------ECCEEEEEEEEEEE
Confidence 99999999999999999999999996 36899999999886
No 42
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=97.75 E-value=0.0012 Score=50.86 Aligned_cols=81 Identities=11% Similarity=0.090 Sum_probs=60.1
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhcCCceeEEEEEeEEEecCCCCCCEEEEEEEEEEeCCcEEEEEEEEEEcccccCCCCC
Q 030085 52 KVLHGGVSALIAESLASMGAHMASGFKRVAGVQLTINHLKSAELGDLVRAVATPINLGKTIQVWQVRLWKVKEVQSDDGR 131 (183)
Q Consensus 52 G~lHGG~~a~LaD~A~g~a~~~~~~~~~~vTv~l~i~flrpa~~Gd~l~a~a~vi~~Gr~~~~~~v~i~~~~~~~~~~~~ 131 (183)
=.+||-..++++-.+.+ . ...++....-..++++|++|+..||+|+++.+++..-.....+++++++
T Consensus 43 ~iahG~l~~~~~~~~~~--~-~~~~~~~~~~~~~~~rf~~PV~~gdtl~~~~~v~~~~~~~~~~~~~~~n---------- 109 (126)
T cd03447 43 TITHGMYTSAAVRALVE--T-WAADNDRSRVRSFTASFVGMVLPNDELEVRLEHVGMVDGRKVIKVEARN---------- 109 (126)
T ss_pred CeechhHHHHHHHHHHH--H-hccCCCcceEEEEEEEEcccCcCCCEEEEEEEEEEEeCCeEEEEEEEEE----------
Confidence 45899888888865431 1 1222233455667999999999999999999999765556788888888
Q ss_pred CCCCCCCcCCCCCCCCC-CcEEEEEEEEEE
Q 030085 132 DHDADHHHHNNSTSSSS-SIMISSSTVTLL 160 (183)
Q Consensus 132 ~~~~~~~~~~~~~~~~~-g~lvA~~t~T~~ 160 (183)
++ |+++..++.+..
T Consensus 110 ---------------q~~g~~V~~g~~~v~ 124 (126)
T cd03447 110 ---------------EETGELVLRGEAEVE 124 (126)
T ss_pred ---------------CCCCCEEEEEEEEEe
Confidence 55 899888887764
No 43
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=97.75 E-value=0.00027 Score=54.26 Aligned_cols=81 Identities=12% Similarity=0.096 Sum_probs=56.5
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhcCCceeEEEEE-eEEEecCCCCCCEEEEEEEEEEeC-------CcEEEEEEEEEEcc
Q 030085 52 KVLHGGVSALIAESLASMGAHMASGFKRVAGVQL-TINHLKSAELGDLVRAVATPINLG-------KTIQVWQVRLWKVK 123 (183)
Q Consensus 52 G~lHGG~~a~LaD~A~g~a~~~~~~~~~~vTv~l-~i~flrpa~~Gd~l~a~a~vi~~G-------r~~~~~~v~i~~~~ 123 (183)
-.+||..+++++-. +... ...+.......+ ++.|.+|+.+||+|+++++|+..- ..+..+++++++
T Consensus 54 ~ia~G~l~~~~~~~---~~~~-~~~~~~~~~~~~~~~~f~~pv~~GDtl~~~~~v~~~~~~~~~~~~~~v~~~~~~~n-- 127 (146)
T cd03451 54 RLVNSLFTLSLALG---LSVN-DTSLTAVANLGYDEVRFPAPVFHGDTLYAESEVLSKRESKSRPDAGIVTVRTVGYN-- 127 (146)
T ss_pred ccccHHhHHHHHhh---heeh-hccccceeccCccEEEecCCCCCCCEEEEEEEEEEEecCCCCCCCeEEEEEEEEEC--
Confidence 47888888766531 1111 111111222232 899999999999999999998542 248888888887
Q ss_pred cccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEEE
Q 030085 124 EVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLLC 161 (183)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~ 161 (183)
++|++|+.++.++++
T Consensus 128 -----------------------q~g~~V~~~~~~~~~ 142 (146)
T cd03451 128 -----------------------QDGEPVLSFERTALV 142 (146)
T ss_pred -----------------------CCCCEEEEEEehhEE
Confidence 679999999999884
No 44
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=97.72 E-value=0.0006 Score=61.96 Aligned_cols=90 Identities=14% Similarity=0.078 Sum_probs=75.0
Q ss_pred EEeCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhcCCceeEEEEE-eEEEecCCCCCCEEEEEEEEEEeC
Q 030085 31 ELTPERIIGCFRVTQNSCQPFKVLHGGVSALIAESLASMGAHMASGFKRVAGVQL-TINHLKSAELGDLVRAVATPINLG 109 (183)
Q Consensus 31 ~~~~g~v~~~m~v~~~~~Np~G~lHGG~~a~LaD~A~g~a~~~~~~~~~~vTv~l-~i~flrpa~~Gd~l~a~a~vi~~G 109 (183)
-..+..+...--..|.+.|.+|.+|||+++-.|+.++...|..... ..+.+.++ .|+|.+|+..|..|+..|.|...-
T Consensus 194 ~m~dT~v~sseI~~P~~~N~~G~iFGGflMrka~ElA~~~A~~f~~-~~p~~rsVD~i~F~~pVdvG~~L~f~s~V~yT~ 272 (357)
T KOG2763|consen 194 WMKDTKVSSSEICQPEHRNIHGTIFGGFLMRKALELAEITAKLFCK-GRPATRSVDDIEFQKPVDVGCVLTFSSFVTYTD 272 (357)
T ss_pred EeeccceeEEEeecCcccCccCceehHHHHHHHHHHHHHHHHHHcC-CCceEEEechhhccCcceeeeEEEEeeEEEEec
Confidence 3445566667778889999999999999999999998877776654 45677888 599999999999999999999886
Q ss_pred CcEEEEEEEEEE
Q 030085 110 KTIQVWQVRLWK 121 (183)
Q Consensus 110 r~~~~~~v~i~~ 121 (183)
.+-.++++++.+
T Consensus 273 ~k~~~vqv~~~~ 284 (357)
T KOG2763|consen 273 NKSIYVQVKAVA 284 (357)
T ss_pred CCceeEEEEEec
Confidence 666888888876
No 45
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=97.70 E-value=0.00039 Score=53.06 Aligned_cols=80 Identities=20% Similarity=0.223 Sum_probs=54.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCC-ceeEEEE-EeEEEecCCCCCCEEEEEEEEEEeC------CcEEEEEEEEEEccc
Q 030085 53 VLHGGVSALIAESLASMGAHMASGF-KRVAGVQ-LTINHLKSAELGDLVRAVATPINLG------KTIQVWQVRLWKVKE 124 (183)
Q Consensus 53 ~lHGG~~a~LaD~A~g~a~~~~~~~-~~~vTv~-l~i~flrpa~~Gd~l~a~a~vi~~G------r~~~~~~v~i~~~~~ 124 (183)
.+||..+++++--+. ....... ....... -++.|++|+.+||+|+++++|+... +.+..++++++|
T Consensus 52 ia~G~~~~a~~~~~~---~~~~~~~~~~~~~~g~~~~~f~~pv~~GD~l~~~~~v~~~~~~~~~~~~~v~~~~~~~n--- 125 (140)
T cd03446 52 IAHGLLTLSIATGLL---QRLGVFERTVVAFYGIDNLRFLNPVFIGDTIRAEAEVVEKEEKDGEDAGVVTRRIEVVN--- 125 (140)
T ss_pred eeccccHHHHHhhHh---hhcccccceeeEEeccceEEEcCCCCCCCEEEEEEEEEEecccCCCCceEEEEEEEEEc---
Confidence 688888777654322 1111111 1111122 2899999999999999999998652 247777888887
Q ss_pred ccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEE
Q 030085 125 VQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLL 160 (183)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~ 160 (183)
++|++|..++.+.+
T Consensus 126 ----------------------q~g~~v~~~~~~~l 139 (140)
T cd03446 126 ----------------------QRGEVVQSGEMSLL 139 (140)
T ss_pred ----------------------CCCCEEEEEEEeee
Confidence 78999999998876
No 46
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=97.69 E-value=0.00033 Score=64.00 Aligned_cols=94 Identities=12% Similarity=0.194 Sum_probs=80.2
Q ss_pred EEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhcCCceeEEEEEeEEEecCCCCCCEEEEEEEEEEeCCcEEEEEEEEE
Q 030085 41 FRVTQNSCQPFKVLHGGVSALIAESLASMGAHMASGFKRVAGVQLTINHLKSAELGDLVRAVATPINLGKTIQVWQVRLW 120 (183)
Q Consensus 41 m~v~~~~~Np~G~lHGG~~a~LaD~A~g~a~~~~~~~~~~vTv~l~i~flrpa~~Gd~l~a~a~vi~~Gr~~~~~~v~i~ 120 (183)
+++.|.+.|+.|++-=|+++.|+-.+.-...... ......-=++++-||+|+...+.+.+..+++..||+.+-+++++|
T Consensus 337 ~~V~P~M~n~~Gtis~gv~~~ll~e~~qr~l~k~-~~~niiIE~i~iyflk~vqid~~l~I~prIl~~gR~~a~idvei~ 415 (432)
T COG4109 337 VEVEPQMINSLGTISNGVFTELLTEVVQRVLRKK-KKRNIIIENITIYFLKPVQIDSVLEIYPRILEEGRKFAKIDVEIY 415 (432)
T ss_pred EEechhhccccccchHHHHHHHHHHHHHHHHHHh-cCCceEEEeeeeeeecceecccEEEEeeeeeccccccceeEEEEe
Confidence 8899999999999999999999998876555443 224456667899999999999999999999999999999999999
Q ss_pred EcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEEE
Q 030085 121 KVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLLC 161 (183)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~ 161 (183)
. ++.++|.+-.+..+
T Consensus 416 ~--------------------------~~~ivaKAiv~~ql 430 (432)
T COG4109 416 H--------------------------DGQIVAKAIVTVQL 430 (432)
T ss_pred e--------------------------Ccchhhhheeeeec
Confidence 6 46778888877653
No 47
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=97.69 E-value=0.00061 Score=54.81 Aligned_cols=64 Identities=16% Similarity=0.055 Sum_probs=52.2
Q ss_pred eEEEEEeEEEecCCCCCCEEEEEEEEEE--e--CCcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEE
Q 030085 80 VAGVQLTINHLKSAELGDLVRAVATPIN--L--GKTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSS 155 (183)
Q Consensus 80 ~vTv~l~i~flrpa~~Gd~l~a~a~vi~--~--Gr~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~ 155 (183)
++-.+.+++|++|+.+||+|+++.+|+. . ++.+..++++++| ++|++|..+
T Consensus 84 ~~~~~q~~~f~~PV~~GDtL~~~~eV~~~~~~~~~giv~~~~~v~N-------------------------q~Ge~V~~~ 138 (159)
T PRK13692 84 IVQVDQVLKFEKPIVAGDKLYCDVYVDSVREAHGTQIIVTKNIVTN-------------------------EEGDVVQET 138 (159)
T ss_pred eEeeeeEEEEeCCccCCCEEEEEEEEEEEEEcCCceEEEEEEEEEc-------------------------CCCCEEEEE
Confidence 4556678999999999999999999973 2 5678999999998 789999999
Q ss_pred EEEEEEecCCCCcc
Q 030085 156 TVTLLCNLPVPDHA 169 (183)
Q Consensus 156 t~T~~~~~p~p~~~ 169 (183)
+.|+++ .+..+.+
T Consensus 139 ~~~~~~-r~~~~~~ 151 (159)
T PRK13692 139 YTTLAG-RAGEDGE 151 (159)
T ss_pred EEEEEE-ecCCcCC
Confidence 999994 4444443
No 48
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=97.65 E-value=0.0011 Score=50.89 Aligned_cols=81 Identities=10% Similarity=0.040 Sum_probs=56.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCC-ceeEEEE-EeEEEecCCCCCCEEEEEEEEEEe-------CCcEEEEEEEEEEcc
Q 030085 53 VLHGGVSALIAESLASMGAHMASGF-KRVAGVQ-LTINHLKSAELGDLVRAVATPINL-------GKTIQVWQVRLWKVK 123 (183)
Q Consensus 53 ~lHGG~~a~LaD~A~g~a~~~~~~~-~~~vTv~-l~i~flrpa~~Gd~l~a~a~vi~~-------Gr~~~~~~v~i~~~~ 123 (183)
.+||-.+++++-. +........ ....... .++.|++|+.+||+|+++++|+.. |+.+..++++++|
T Consensus 50 ia~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~f~~pv~~Gd~l~~~~~v~~~~~~~~~~~~~~v~~~~~~~n-- 124 (140)
T cd03454 50 AASGWHTAAITMR---LLVDAGLSGSASGGSPGIDELRWPRPVRPGDTLSVEVEVLDKRPSRSRPDRGIVTLRSETLN-- 124 (140)
T ss_pred eechHHHHHHHHH---hhhhhccccceEEEEcceeeeEeCCCCCCCCEEEEEEEEEEEeecCCCCCCeEEEEEEEEEc--
Confidence 6777776766432 111111111 1222333 389999999999999999999855 4458888888888
Q ss_pred cccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEEE
Q 030085 124 EVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLLC 161 (183)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~ 161 (183)
++|++|+.++.+.++
T Consensus 125 -----------------------q~g~~v~~~~~~~~~ 139 (140)
T cd03454 125 -----------------------QRGEVVLTFEATVLV 139 (140)
T ss_pred -----------------------CCCCEEEEEEehhee
Confidence 789999999988763
No 49
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=97.61 E-value=0.0093 Score=44.37 Aligned_cols=106 Identities=13% Similarity=0.147 Sum_probs=70.4
Q ss_pred EEEEEeC-CEEEEEEEcCCCCcCCC------CcccHHHHH-HHHHHHHHHHHHHhc----CCceeEEEEE-eEEEecCCC
Q 030085 28 ELEELTP-ERIIGCFRVTQNSCQPF------KVLHGGVSA-LIAESLASMGAHMAS----GFKRVAGVQL-TINHLKSAE 94 (183)
Q Consensus 28 ~~~~~~~-g~v~~~m~v~~~~~Np~------G~lHGG~~a-~LaD~A~g~a~~~~~----~~~~~vTv~l-~i~flrpa~ 94 (183)
++.++++ ++++++..+.+++.-.. +.+=|=++. .++-.++.++..... ......-..+ ++.|.+|+.
T Consensus 11 ~i~~~~~~~~~~~~~~i~~~~~~~~~hfp~~p~lPg~~~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~~v~ 90 (131)
T cd00493 11 RVLEIDPGGRIVAEKNVTPNEPFFQGHFPGDPVMPGVLGIEAMAQAAAALAGLLGLGKGNPPRLGYLAGVRKVKFRGPVL 90 (131)
T ss_pred EEEEEcCCCEEEEEEecCCCChhhcccCCCCCCCCcHHHHHHHHHHHHHHHHhcccccccCCcEEEEEEcceeEECCCcC
Confidence 5667777 88999999888753322 233332222 233332222222111 1122344443 899999999
Q ss_pred CCCEEEEEEEEEEeCCcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEE
Q 030085 95 LGDLVRAVATPINLGKTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTL 159 (183)
Q Consensus 95 ~Gd~l~a~a~vi~~Gr~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~ 159 (183)
+||+|++++++......+..+.++++. +|++++.++.++
T Consensus 91 pgd~l~i~~~i~~~~~~~~~~~~~~~~--------------------------~g~~v~~~~~~~ 129 (131)
T cd00493 91 PGDTLTLEVELLKVRRGLGKFDGRAYV--------------------------DGKLVAEAELMA 129 (131)
T ss_pred CCCEEEEEEEEEEeeCCEEEEEEEEEE--------------------------CCEEEEEEEEEE
Confidence 999999999999988889999999996 489999998544
No 50
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=97.58 E-value=0.0018 Score=60.27 Aligned_cols=81 Identities=14% Similarity=0.133 Sum_probs=62.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCceeEEEEEeEEEecCCCCCCEEEEEEEEEEe--CCcEEEEEEEEEEcccccCCCC
Q 030085 53 VLHGGVSALIAESLASMGAHMASGFKRVAGVQLTINHLKSAELGDLVRAVATPINL--GKTIQVWQVRLWKVKEVQSDDG 130 (183)
Q Consensus 53 ~lHGG~~a~LaD~A~g~a~~~~~~~~~~vTv~l~i~flrpa~~Gd~l~a~a~vi~~--Gr~~~~~~v~i~~~~~~~~~~~ 130 (183)
.+||-.+++++..+. . ...++...+-...+++|.+|+..||+|+++.+++.. ++.+..++++++|
T Consensus 60 IahG~l~~s~~~~l~---~-~~~~g~~~~~~~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~v~~~~~~~n--------- 126 (466)
T PRK08190 60 VAHGMWGGALISAVL---G-TRLPGPGTIYLGQSLRFRRPVRIGDTLTVTVTVREKDPEKRIVVLDCRCTN--------- 126 (466)
T ss_pred eeCHHHHHHHHHHHH---h-hhCCCcceEEEEEEEEEeCCcCCCCEEEEEEEEEEEECCCCEEEEEEEEEe---------
Confidence 689988888775332 1 123333455567899999999999999999999743 6678888889998
Q ss_pred CCCCCCCCcCCCCCCCCCCcEEEEEEEEEEEe
Q 030085 131 RDHDADHHHHNNSTSSSSSIMISSSTVTLLCN 162 (183)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~~ 162 (183)
++|++|..++.++++.
T Consensus 127 ----------------q~G~~V~~g~~~~l~~ 142 (466)
T PRK08190 127 ----------------QDGEVVITGTAEVIAP 142 (466)
T ss_pred ----------------CCCCEEEEEEEEeecc
Confidence 7899999999998843
No 51
>cd01289 FabA_like Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ.
Probab=97.54 E-value=0.018 Score=44.90 Aligned_cols=107 Identities=12% Similarity=0.056 Sum_probs=72.8
Q ss_pred EEEEEeCCEEEEEEEcCCCCcCC---CCcccHHHHHHH-HHHHHHHHHH-Hh-c--CCceeEEEEE-eEEEecCCCC-CC
Q 030085 28 ELEELTPERIIGCFRVTQNSCQP---FKVLHGGVSALI-AESLASMGAH-MA-S--GFKRVAGVQL-TINHLKSAEL-GD 97 (183)
Q Consensus 28 ~~~~~~~g~v~~~m~v~~~~~Np---~G~lHGG~~a~L-aD~A~g~a~~-~~-~--~~~~~vTv~l-~i~flrpa~~-Gd 97 (183)
++.+++++.+++...++.+...+ .+.+-|=.+.=. |=.++.++.. .. . +.+...-+.+ ++.|.+|+.+ ||
T Consensus 18 ~v~~~~~~~~~~~~~v~~~~~f~~~~~~~~P~~l~iE~mAQa~a~~~g~~~~~~~~~~~~g~l~~i~~~~f~~~v~p~Gd 97 (138)
T cd01289 18 RVISWDDDSIHCRATVHPDPLFPLRAHGRLPAWVGIEYMAQAIAAHGGLLARQQGNPPRPGFLLGSRKYEAHVDRFDLGS 97 (138)
T ss_pred EEEEEcCCEEEEEEEeCCCCcCccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEEEEEcceeCCCC
Confidence 56677888998888888754322 245554433322 2233222211 11 1 2234455555 7999999766 99
Q ss_pred EEEEEEEEEEeC-CcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEE
Q 030085 98 LVRAVATPINLG-KTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLL 160 (183)
Q Consensus 98 ~l~a~a~vi~~G-r~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~ 160 (183)
.++++++.++.. +.+.+++++++- +|+++|.++.+++
T Consensus 98 ~l~i~~~~~~~~~~~~~~~~~~~~v--------------------------~~~~va~a~l~~~ 135 (138)
T cd01289 98 TLLIVVAELLQGDSGLGVFECTIED--------------------------QGGVLASGRLNVY 135 (138)
T ss_pred eeEEEeeeeeeCCCcEEEEEEEEEE--------------------------CCEEEEEEEEEEE
Confidence 999999998887 499999999995 5799999999988
No 52
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=97.49 E-value=0.0023 Score=49.88 Aligned_cols=81 Identities=16% Similarity=0.131 Sum_probs=57.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCceeEEE-EEeEEEecCCCCCCEEEEEEEEEEe------CCcEEEEEEEEEEcccc
Q 030085 53 VLHGGVSALIAESLASMGAHMASGFKRVAGV-QLTINHLKSAELGDLVRAVATPINL------GKTIQVWQVRLWKVKEV 125 (183)
Q Consensus 53 ~lHGG~~a~LaD~A~g~a~~~~~~~~~~vTv-~l~i~flrpa~~Gd~l~a~a~vi~~------Gr~~~~~~v~i~~~~~~ 125 (183)
.+||-..++++-... . ...++...... .-+++|++|+.+||+|+++.+|... ++.+..+++++.|
T Consensus 52 ia~G~l~~s~~~~l~---~-~~~~~~~~~~~g~~~~rf~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~n---- 123 (142)
T cd03452 52 VAHGYFVLSAAAGLF---V-DPAPGPVLANYGLENLRFLEPVYPGDTIQVRLTCKRKIPRDGQDYGVVRWDAEVTN---- 123 (142)
T ss_pred eecHHHHHHHHhhhC---c-cCCcccEEEEeccceEEECCCCCCCCEEEEEEEEEEEeecCCCCcEEEEEEEEEEe----
Confidence 788888888776532 1 11122212222 2389999999999999999999865 1237778888888
Q ss_pred cCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEEEe
Q 030085 126 QSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLLCN 162 (183)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~~ 162 (183)
++|++|..++.++++.
T Consensus 124 ---------------------q~g~~V~~~~~~~~~~ 139 (142)
T cd03452 124 ---------------------QNGELVASYDILTLVA 139 (142)
T ss_pred ---------------------cCCCEEEEEEehHeeE
Confidence 7899999999988853
No 53
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=97.40 E-value=0.0045 Score=50.21 Aligned_cols=60 Identities=17% Similarity=0.076 Sum_probs=49.0
Q ss_pred EEEEEeEEEecCCCCCCEEEEEEEEEEe----CCcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEE
Q 030085 81 AGVQLTINHLKSAELGDLVRAVATPINL----GKTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSST 156 (183)
Q Consensus 81 vTv~l~i~flrpa~~Gd~l~a~a~vi~~----Gr~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t 156 (183)
+-.+-++.|++|+.+||+|+++.+|+.. ++.+..++.+++| ++|++|+.++
T Consensus 85 v~~~q~~~f~rPV~~GDtL~~~~~V~~~~~~~~~g~V~~~~~~~N-------------------------Q~Ge~V~~~~ 139 (166)
T PRK13691 85 VQVDQRFVFHKPVLAGDKLWARMDIHSVDERFGADIVVTRNVCTN-------------------------DDGELVMEAY 139 (166)
T ss_pred eeeeeEEEEeCCcCCCCEEEEEEEEEEEEEcCCCcEEEEEEEEEC-------------------------CCCCEEEEEE
Confidence 3345588899999999999999998854 5568888999998 7899999999
Q ss_pred EEEEEecCCC
Q 030085 157 VTLLCNLPVP 166 (183)
Q Consensus 157 ~T~~~~~p~p 166 (183)
.+++ ...+-
T Consensus 140 ~~~~-~~~~~ 148 (166)
T PRK13691 140 TTLM-GQQGD 148 (166)
T ss_pred EEEE-EecCC
Confidence 9998 44443
No 54
>COG5496 Predicted thioesterase [General function prediction only]
Probab=97.38 E-value=0.01 Score=47.04 Aligned_cols=102 Identities=18% Similarity=0.111 Sum_probs=78.1
Q ss_pred EEEEEcCCCCcCC-------CCcccHHHHHHHHHHHHHHHHHHhcCC-ceeEEEEEeEEEecCCCCCCEEEEEEEEEEeC
Q 030085 38 IGCFRVTQNSCQP-------FKVLHGGVSALIAESLASMGAHMASGF-KRVAGVQLTINHLKSAELGDLVRAVATPINLG 109 (183)
Q Consensus 38 ~~~m~v~~~~~Np-------~G~lHGG~~a~LaD~A~g~a~~~~~~~-~~~vTv~l~i~flrpa~~Gd~l~a~a~vi~~G 109 (183)
+.++.+++++.-+ ...+-=+++..+.++++--.+....+. ...+..+..++++.|..+|.+|.+.+++.+.-
T Consensus 8 e~~~lv~dn~t~~~~~~~~~~~VlATp~mi~~~E~a~~el~~~~Ld~g~ttVG~ev~vrHla~~~~G~~V~i~~~l~~v~ 87 (130)
T COG5496 8 EGEFLVRDNHTVPPAEGSGMLNVLATPAMIGFMENASYELLQPYLDNGETTVGTEVLVRHLAATPPGLTVTIGARLEKVE 87 (130)
T ss_pred EEEEEecccccCchhHhCCccceeehHHHHHHHHHHHHHHHHhhCcCCcceeeEEEEeeeccCCCCCCeEEEEEEEEEEe
Confidence 4445555555442 345667899999999876566555554 67899999999999999999999999999986
Q ss_pred CcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEEEecCCC
Q 030085 110 KTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLLCNLPVP 166 (183)
Q Consensus 110 r~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~~~p~p 166 (183)
++=..+.+++. ++|.+|..+++|=.+ +|+-
T Consensus 88 Gr~v~f~i~a~--------------------------~~~~~Ig~g~h~R~i-v~~~ 117 (130)
T COG5496 88 GRKVKFRIIAM--------------------------EGGDKIGEGTHTRVI-VPRE 117 (130)
T ss_pred ccEEEEEEEEe--------------------------eCCcEEeeeEEEEEE-ecHH
Confidence 66666777776 368999999999884 5543
No 55
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=97.34 E-value=0.0071 Score=45.11 Aligned_cols=83 Identities=17% Similarity=0.145 Sum_probs=69.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCC-----ceeEEEEEeEEEecCCCCCCEEEEEEEEEEeCCcEEEEEEEEEEcccccC
Q 030085 53 VLHGGVSALIAESLASMGAHMASGF-----KRVAGVQLTINHLKSAELGDLVRAVATPINLGKTIQVWQVRLWKVKEVQS 127 (183)
Q Consensus 53 ~lHGG~~a~LaD~A~g~a~~~~~~~-----~~~vTv~l~i~flrpa~~Gd~l~a~a~vi~~Gr~~~~~~v~i~~~~~~~~ 127 (183)
.+|=.++|-+.|......+....+. ....+++-+|.|.+|....+.+..+.+..+.|.--+..++++|+
T Consensus 16 ~~~~a~lA~~SD~~~l~~~~~~~~~~~~~~~~~aSldhsi~Fh~~~~~~~W~l~~~~~~~~~~gr~~~~~~l~~------ 89 (104)
T cd03444 16 RLHAAALAYLSDSLLLGTALRPHGLPLFDASASASLDHAIWFHRPFRADDWLLYEQRSPRAGNGRGLVEGRIFT------ 89 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcccCcceEeeeEEEEEeCCCCCCceEEEEEECccccCCeeEEEEEEEC------
Confidence 6888999999998865554443332 25789999999999998877999999999999999999999998
Q ss_pred CCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEE
Q 030085 128 DDGRDHDADHHHHNNSTSSSSSIMISSSTVTLL 160 (183)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~ 160 (183)
++|++||++.-.-+
T Consensus 90 -------------------~~G~LvAs~~Q~~l 103 (104)
T cd03444 90 -------------------RDGELVASVAQEGL 103 (104)
T ss_pred -------------------CCCCEEEEEEEeee
Confidence 78999999887654
No 56
>PLN02370 acyl-ACP thioesterase
Probab=97.20 E-value=0.042 Score=51.07 Aligned_cols=122 Identities=8% Similarity=-0.075 Sum_probs=88.8
Q ss_pred CCchhhhcCCEEEEEeCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHh--------------cCCceeEEE
Q 030085 18 PDAPLKAIGFELEELTPERIIGCFRVTQNSCQPFKVLHGGVSALIAESLASMGAHMA--------------SGFKRVAGV 83 (183)
Q Consensus 18 ~~p~~~~Lg~~~~~~~~g~v~~~m~v~~~~~Np~G~lHGG~~a~LaD~A~g~a~~~~--------------~~~~~~vTv 83 (183)
++.+...+|+.-..-+-...+..+.++...+++.|.+-=..++-++-.++..=+... ..+...|-.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~y~~~f~Ir~yEvD~~g~lsl~~L~n~lQd~A~~Hs~~lGll~~Gfg~~~~m~~~gl~WVLt 200 (419)
T PLN02370 121 SDMLIDPFGIGRIVQDGLVFRQNFSIRSYEIGADRTASIETLMNHLQETALNHVKTAGLLGDGFGSTPEMSKRNLIWVVT 200 (419)
T ss_pred CcccccccccCceeccCcEEEEEEEEeeEEECCCCCCCHHHHHHHHHHHHHHHHHHhCccccccccHHHHHhCCceEEEE
Confidence 444554555432221222346667788888999998887777777666644332211 112357889
Q ss_pred EEeEEEecCCCCCCEEEEEEEEEEeCCcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEEEec
Q 030085 84 QLTINHLKSAELGDLVRAVATPINLGKTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLLCNL 163 (183)
Q Consensus 84 ~l~i~flrpa~~Gd~l~a~a~vi~~Gr~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~~~ 163 (183)
.+.|.|.|+...||.|+++.++...||..++-+.+|++. ++|++++.++.+|.+.-
T Consensus 201 r~~I~~~R~P~~gD~V~V~Twv~~~~k~~~~Rdf~I~D~------------------------~~Ge~la~A~SvWV~mD 256 (419)
T PLN02370 201 RMQVLVDRYPTWGDVVQVDTWVSASGKNGMRRDWLVRDC------------------------KTGETLTRASSVWVMMN 256 (419)
T ss_pred EEEEEeCcCCCCCCEEEEEEEEeeCCCCEEEEEEEEEEC------------------------CCCeEEEEEEEEEEEEE
Confidence 999999999999999999999999999999999999982 47999999999987644
No 57
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=97.16 E-value=0.0043 Score=51.77 Aligned_cols=77 Identities=18% Similarity=0.178 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHhcCC--ceeEEEEEeEEE-ecCCCCCCEEEEEEEEEEeCCcEEEEEEEEEEcccccCCCCCCCCC
Q 030085 59 SALIAESLASMGAHMASGF--KRVAGVQLTINH-LKSAELGDLVRAVATPINLGKTIQVWQVRLWKVKEVQSDDGRDHDA 135 (183)
Q Consensus 59 ~a~LaD~A~g~a~~~~~~~--~~~vTv~l~i~f-lrpa~~Gd~l~a~a~vi~~Gr~~~~~~v~i~~~~~~~~~~~~~~~~ 135 (183)
++.++|............. ...+|++++|.| -.|...++.+..+++....+.-.+..+++||+
T Consensus 175 l~~~~D~~~~~~~~~~~~~~~~~~~tld~ti~f~~~p~~~~~Wl~~~~~~~~~~~Gr~~~~~~l~d-------------- 240 (255)
T PF13622_consen 175 LAFLSDAFPPATLRAFSGPEWWFPATLDHTIHFHRLPFDGDEWLLLEARSPRAGNGRALMEGRLWD-------------- 240 (255)
T ss_dssp HHHHCTCCHHHHHHCHTSS--B-EEEEEEEEEECSHCCTTTS-EEEEEEEEEEETTEEEEEEEEEE--------------
T ss_pred HHHHHHhcchhhccccCCccccccccceeEEEEEeCCccCCceEEEEEEEeEeCCCEEEEEEEEEC--------------
Confidence 8889998744443322222 346699999997 55666677999999888888888999999999
Q ss_pred CCCcCCCCCCCCCCcEEEEEEEEEE
Q 030085 136 DHHHHNNSTSSSSSIMISSSTVTLL 160 (183)
Q Consensus 136 ~~~~~~~~~~~~~g~lvA~~t~T~~ 160 (183)
++|++||+++.+.+
T Consensus 241 -----------~~G~lvA~~~Q~~l 254 (255)
T PF13622_consen 241 -----------EDGRLVASSRQEAL 254 (255)
T ss_dssp -----------TTS-EEEEEEEEEE
T ss_pred -----------CCCCEEEEEEEEee
Confidence 78999999998876
No 58
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=97.06 E-value=0.039 Score=51.88 Aligned_cols=108 Identities=13% Similarity=0.092 Sum_probs=73.2
Q ss_pred EEEEEeCCEEEEEEEcCCCC--cC----CCCcccHHHHHHHHHHHHHHHHHHhcCC---ceeEEEEE-eEEEecCCCCCC
Q 030085 28 ELEELTPERIIGCFRVTQNS--CQ----PFKVLHGGVSALIAESLASMGAHMASGF---KRVAGVQL-TINHLKSAELGD 97 (183)
Q Consensus 28 ~~~~~~~g~v~~~m~v~~~~--~N----p~G~lHGG~~a~LaD~A~g~a~~~~~~~---~~~vTv~l-~i~flrpa~~Gd 97 (183)
++.++++++++....++.+. .. ....++|=++.-++=-++++.+....+. ....-..+ ++.|++|+.+||
T Consensus 341 rIl~~e~~~i~a~k~Vs~De~ff~GHFPg~PI~PGVL~IEaMAQaagil~~~~~~~~~g~lg~LlgI~kvKF~~PV~PGD 420 (464)
T PRK13188 341 KIIELGDTKIVGIKNVTMNEPFFQGHFPGNPVMPGVLQIEAMAQTGGILVLNTVPDPENYSTYFMKIDKVKFRQKVVPGD 420 (464)
T ss_pred EEeEEeCCEEEEEEEcCCCcHHhhccCCCCCccccHHHHHHHHHHHHHHHhhccCCCCCceEEEEeccEEEEcCCCCCCC
Confidence 45566678888888887764 22 2456776554422222223322211121 23344555 789999999999
Q ss_pred EEEEEEEEEE-eCCcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEEE
Q 030085 98 LVRAVATPIN-LGKTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLLC 161 (183)
Q Consensus 98 ~l~a~a~vi~-~Gr~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~ 161 (183)
+|++++++++ ..+.+..++++++. +|++++.++.++++
T Consensus 421 tL~I~veI~~~~~~giv~f~g~~~v--------------------------dGelVaeael~~~v 459 (464)
T PRK13188 421 TLIFKVELLSPIRRGICQMQGKAYV--------------------------NGKLVCEAELMAQI 459 (464)
T ss_pred EEEEEEEEEEEecCCEEEEEEEEEE--------------------------CCEEEEEEEEEEEE
Confidence 9999999886 55778899999984 58999999999984
No 59
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=97.03 E-value=0.0098 Score=50.51 Aligned_cols=83 Identities=11% Similarity=0.081 Sum_probs=64.6
Q ss_pred cccHHHHHHHHHHHH-HHHHHHhc-CC---ceeEEEEEeEEEecCCCCCCEEEEEEEEEEeCCcEEEEEEEEEEcccccC
Q 030085 53 VLHGGVSALIAESLA-SMGAHMAS-GF---KRVAGVQLTINHLKSAELGDLVRAVATPINLGKTIQVWQVRLWKVKEVQS 127 (183)
Q Consensus 53 ~lHGG~~a~LaD~A~-g~a~~~~~-~~---~~~vTv~l~i~flrpa~~Gd~l~a~a~vi~~Gr~~~~~~v~i~~~~~~~~ 127 (183)
.+|=-.++.++|..+ ..+..... .. ....++|.+|.|.++...++.+..+++....+.-..+.+++||+
T Consensus 182 ~~~~~~la~~sD~~~l~~~l~~~~~~~~~~~~~aSldhtv~fh~~~~~~~W~l~~~~s~~~~~Grg~~~~~l~d------ 255 (271)
T TIGR00189 182 RLHQCALAYLSDLTLLPTALNPHNKAGFDGSMAASLDHSIWFHRPFRADDWLLYKCSSPSASGSRGLVEGKIFT------ 255 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccCCcEEEeeeeeEEEeCCCCCCeeEEEEEEeccccCCceEEEEEEEC------
Confidence 457788999999832 22322221 11 33579999999999988888999999999888888999999998
Q ss_pred CCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEE
Q 030085 128 DDGRDHDADHHHHNNSTSSSSSIMISSSTVTLL 160 (183)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~ 160 (183)
.+|++||+++-.-+
T Consensus 256 -------------------~~G~lvAs~~Qe~l 269 (271)
T TIGR00189 256 -------------------RDGVLIASTVQEGL 269 (271)
T ss_pred -------------------CCCCEEEEEEeeee
Confidence 78999999887654
No 60
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=96.84 E-value=0.14 Score=39.29 Aligned_cols=94 Identities=14% Similarity=0.092 Sum_probs=58.0
Q ss_pred EEEEEe-C-CE----EEEEEEcCCCCc--C---CCCcccHHHHH--HHHHHHHHHHHHHhc-C--C---ceeEEEEE-eE
Q 030085 28 ELEELT-P-ER----IIGCFRVTQNSC--Q---PFKVLHGGVSA--LIAESLASMGAHMAS-G--F---KRVAGVQL-TI 87 (183)
Q Consensus 28 ~~~~~~-~-g~----v~~~m~v~~~~~--N---p~G~lHGG~~a--~LaD~A~g~a~~~~~-~--~---~~~vTv~l-~i 87 (183)
++.+++ + +. ++++..+.+++- . |..-+--|++. +++-.++.++..... . + ....-..+ ++
T Consensus 12 ~v~~v~~~g~~~~g~~~a~~~v~~~~~~f~gHFp~~Pv~PGvl~iE~~aQ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 91 (138)
T PF07977_consen 12 RVLEVDPPGGSHGGRIVARKNVTPDEPFFDGHFPGDPVMPGVLLIEAMAQAAGFLAGYSGLAEGTGEARKVPFLAGIRNV 91 (138)
T ss_dssp EEEEEETTTTETTEEEEEEEEE-TTSGGGGCSTTTS--B-HHHHHHHHHHHHHHHHHHHCCSSSCCCCCEEEEEEEEEEE
T ss_pred EEEEEEcCCCeEEEEEEEEEEeCCCCCEEEcCCCCCCCCCeEhHHHHHHHHHHhHhhhccccccCCCcceEEEeccccEE
Confidence 566666 4 44 888888887652 2 22334445444 455655544444421 1 1 11223333 79
Q ss_pred EEecCCCCCC-EEEEEEEEEE---eCCcEEEEEEEEEE
Q 030085 88 NHLKSAELGD-LVRAVATPIN---LGKTIQVWQVRLWK 121 (183)
Q Consensus 88 ~flrpa~~Gd-~l~a~a~vi~---~Gr~~~~~~v~i~~ 121 (183)
.|++|+.+|+ .+++++++.+ ....++.++++++.
T Consensus 92 kF~~~v~Pg~~~l~~~v~i~~~~~~~~~~~~~~~~~~v 129 (138)
T PF07977_consen 92 KFRGPVYPGDKTLRIEVEIKKIRRREGGMAIFDGTAYV 129 (138)
T ss_dssp EE-S-B-TTE-EEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred EECccEeCCCcEEEEEEEEEEeecccCCEEEEEEEEEE
Confidence 9999999999 9999999999 89999999999995
No 61
>cd01287 FabA FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA structure is a homodimer with two independent active sites located at the dimer interface. Each active site is tunnel-shaped and completely inaccessible to solvent. No metal ions or cofactors are required for ligand binding or catalysis.
Probab=96.44 E-value=0.35 Score=38.67 Aligned_cols=110 Identities=10% Similarity=-0.004 Sum_probs=70.0
Q ss_pred EEEEEeC-------CEEEEEEEcCCCC--cC----CCCcccHHHHHHHHHHHHHHHHHHhcC-------CceeEEEEE-e
Q 030085 28 ELEELTP-------ERIIGCFRVTQNS--CQ----PFKVLHGGVSALIAESLASMGAHMASG-------FKRVAGVQL-T 86 (183)
Q Consensus 28 ~~~~~~~-------g~v~~~m~v~~~~--~N----p~G~lHGG~~a~LaD~A~g~a~~~~~~-------~~~~vTv~l-~ 86 (183)
++.++++ |+++.+..+++++ .+ ...++-|=.+.=.+=-++++.+..... ....+.... +
T Consensus 13 rV~~~~~~~G~~~~g~i~a~k~v~~~e~ff~gHFp~~pvmPG~L~iEamaQ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 92 (150)
T cd01287 13 RVTEIDPGGGTFGLGYLRAEKDIDPDDWFFPCHFHGDPVMPGSLGLEAMIQLLQFYLIWLGLGTGVDNPRFQGAPGGPGE 92 (150)
T ss_pred EEEEEecCCCcccccEEEEEEEcCCCCceEcCCCCCCCcCchHHHHHHHHHHHHHHHhhcccccccCcccceeEeccceE
Confidence 4556665 4788888888864 23 233444433333333333333221111 111222222 7
Q ss_pred EEEecCCCCCC-EEEEEEEEEEeC----CcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEEE
Q 030085 87 INHLKSAELGD-LVRAVATPINLG----KTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLLC 161 (183)
Q Consensus 87 i~flrpa~~Gd-~l~a~a~vi~~G----r~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~ 161 (183)
+.|.+++.+|+ .|+.++++.+.+ ++++..++.++- +|++|+.++..-..
T Consensus 93 ~kfr~~v~Pgd~~l~~e~~i~~~~~~~~~~~~~~~~~~~v--------------------------dg~~v~~a~~~~~~ 146 (150)
T cd01287 93 WKYRGQITPHNKKVTYEVHIKEVGRDGPRPYIIADASLWV--------------------------DGLRIYEAKDIAVR 146 (150)
T ss_pred EEECccCcCCCEEEEEEEEEEEEEccCCccEEEEEEEEEE--------------------------CCEEEEEEEccEEE
Confidence 99999999998 799999999986 499999999995 68999999877654
Q ss_pred ec
Q 030085 162 NL 163 (183)
Q Consensus 162 ~~ 163 (183)
..
T Consensus 147 ~~ 148 (150)
T cd01287 147 LV 148 (150)
T ss_pred eE
Confidence 33
No 62
>KOG3016 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=96.44 E-value=0.036 Score=49.33 Aligned_cols=102 Identities=13% Similarity=0.029 Sum_probs=78.8
Q ss_pred CEEEEEeCCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhcCCceeEEEEEeEEEecCCCCCCEEEEEEEEE
Q 030085 27 FELEELTPERIIGCFRVTQNSCQPFKVLHGGVSALIAESLASMGAHMASGFKRVAGVQLTINHLKSAELGDLVRAVATPI 106 (183)
Q Consensus 27 ~~~~~~~~g~v~~~m~v~~~~~Np~G~lHGG~~a~LaD~A~g~a~~~~~~~~~~vTv~l~i~flrpa~~Gd~l~a~a~vi 106 (183)
++++.++++.-+.+-..... .+|.+.+.||-+++-+=.| |..+. +...+--.|+..|++......+|.-.-+-+
T Consensus 14 l~l~~lD~n~f~~~~l~~g~-~~~~~~~fGG~i~sQaLaA---A~~TV--~e~f~p~SlH~YFI~~gd~~~pI~Y~V~ri 87 (294)
T KOG3016|consen 14 LNLERLDKNLYLTRHLPKGR-EIPSNHAYGGQIASQALAA---ASKTV--EEMFIPHSLHCYFILVGDPNIPIIYDVKRI 87 (294)
T ss_pred heeeecCCCceecccCCccc-cccCcccccceehHHHHHH---HHhcc--ccccccceeeeeeeecCCCCCceEEEeeee
Confidence 35667777766666554322 3778889999888765332 33332 234667789999999999998999999999
Q ss_pred EeCCcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEE
Q 030085 107 NLGKTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLL 160 (183)
Q Consensus 107 ~~Gr~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~ 160 (183)
|.||+.+.-+|+.+. +||+|-++...|-
T Consensus 88 rdGr~F~~R~V~AvQ--------------------------~~k~If~~qiSF~ 115 (294)
T KOG3016|consen 88 RDGRNFATRSVDAVQ--------------------------KGKTIFTLQISFQ 115 (294)
T ss_pred cCCceeEEEEEEEEE--------------------------CCeEEEEEEEEEc
Confidence 999999999999994 6899999999997
No 63
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=96.10 E-value=0.16 Score=40.58 Aligned_cols=52 Identities=13% Similarity=0.196 Sum_probs=43.1
Q ss_pred eEEEecCCCCCCEEEEEEEEEEe----CCcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEEE
Q 030085 86 TINHLKSAELGDLVRAVATPINL----GKTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLLC 161 (183)
Q Consensus 86 ~i~flrpa~~Gd~l~a~a~vi~~----Gr~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~ 161 (183)
++.|++|+.+||+|+++.+++.. .+.+..++.++++ ..|+++.....+.++
T Consensus 100 ~vRF~~PV~~Gdtl~~~~~v~~~~~~~~~G~v~~~~~~~~-------------------------~~g~~v~~~~~~~~~ 154 (159)
T COG2030 100 EVRFVKPVFPGDTLRARVEVLDKRPSKSRGLVTLRLETVN-------------------------QEGELVLTLEATVLV 154 (159)
T ss_pred ceEecCCCCCCCEEEEEEEEEEeeecCCceEEEEEEEEEc-------------------------cCCcEEEEEEEeEeE
Confidence 79999999999999999999853 1366777888887 678899999998885
Q ss_pred e
Q 030085 162 N 162 (183)
Q Consensus 162 ~ 162 (183)
.
T Consensus 155 ~ 155 (159)
T COG2030 155 L 155 (159)
T ss_pred e
Confidence 3
No 64
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
Probab=96.00 E-value=0.09 Score=39.60 Aligned_cols=67 Identities=15% Similarity=0.074 Sum_probs=44.2
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHhcCCceeEEEEEeEEEecCCCCCCEEEEEEEEEEe--CCcEEEEEEEE
Q 030085 50 PFKVLHGGVSALIAESLASMGAHMASGFKRVAGVQLTINHLKSAELGDLVRAVATPINL--GKTIQVWQVRL 119 (183)
Q Consensus 50 p~G~lHGG~~a~LaD~A~g~a~~~~~~~~~~vTv~l~i~flrpa~~Gd~l~a~a~vi~~--Gr~~~~~~v~i 119 (183)
+.-.+||-.+++++-... .....+........++++|++|+.+||+|.++.+++.. ++....+++++
T Consensus 49 ~~~ivhG~~~~a~~~~~~---~~~~~~~~~~~~~~~~~rF~~PV~~gdtl~~~~~v~~~~~~~~~~~v~~~~ 117 (122)
T PF01575_consen 49 GGPIVHGMLTLALASGLL---GDWLGPNPPARLGRFNVRFRAPVFPGDTLTAEVEVTEKREGKERVRVTVTV 117 (122)
T ss_dssp SSSB-BHHHHHHHHHHHH---HHHHSTTECEEEEEEEEEESS--BTTEEEEEEEEEEEEEEEEEEEEEEEEE
T ss_pred CCEEEccHHHHHHHHHHH---HHhccCccceEEEEEEEEEeccccCCCEEEEEEEEEEEEEcCceEEEEEEE
Confidence 356899999998886443 22222223577888999999999999999999999854 44444444443
No 65
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=95.98 E-value=0.25 Score=38.78 Aligned_cols=66 Identities=6% Similarity=0.004 Sum_probs=46.1
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhcCCceeEEEEEeEEEecCCCC-CC----EEEEEEEEEEe--CCcEEEEEEEEEE
Q 030085 51 FKVLHGGVSALIAESLASMGAHMASGFKRVAGVQLTINHLKSAEL-GD----LVRAVATPINL--GKTIQVWQVRLWK 121 (183)
Q Consensus 51 ~G~lHGG~~a~LaD~A~g~a~~~~~~~~~~vTv~l~i~flrpa~~-Gd----~l~a~a~vi~~--Gr~~~~~~v~i~~ 121 (183)
.=.+||-..++++-.+.. . +.+....+ ..++++|.+|+.. || +|+++++|... ++....+++.+.+
T Consensus 54 ~~iahG~~~~a~~~~~~~--~--~~~~~~~~-~~~~~rF~~pv~~g~D~~~~~l~~~~~V~~~~~~~~~v~~~~~~~~ 126 (142)
T PRK13693 54 TAIAHGMLTMGLGGGYVT--S--WVGDPGAV-TEYNVRFTAVVPVPNDGKGAELVFNGRVKSVDPESKSVTIALTATT 126 (142)
T ss_pred CcEecHHHHHHHHHHHHH--H--hcCCCcce-EEEEEEecccEECCCCccceEEEEEEEEEEeccCCcEEEEEEEEEE
Confidence 456899999888775431 1 22222223 3679999999975 34 89999999854 6778888888876
No 66
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=95.89 E-value=0.16 Score=39.01 Aligned_cols=63 Identities=13% Similarity=0.081 Sum_probs=41.3
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhcCCceeEEEEEeEEEecCCCCCCEEEEEEEEEEeCCcEEEEEEEEE
Q 030085 52 KVLHGGVSALIAESLASMGAHMASGFKRVAGVQLTINHLKSAELGDLVRAVATPINLGKTIQVWQVRLW 120 (183)
Q Consensus 52 G~lHGG~~a~LaD~A~g~a~~~~~~~~~~vTv~l~i~flrpa~~Gd~l~a~a~vi~~Gr~~~~~~v~i~ 120 (183)
=.+||-.+++++..+. .....++....-..++++|.+|+..||+|+++.++ .++ ...+++++.
T Consensus 45 ~iahG~~t~a~~~~~~---~~~~~~~~~~~~~~~~~rF~~PV~~gDtl~~~~~~--~~~-~v~~~~~~~ 107 (122)
T cd03448 45 PILHGLCTYGFAARAV---LEAFADGDPARFKAIKVRFSSPVFPGETLRTEMWK--EGN-RVIFQTKVV 107 (122)
T ss_pred ceehhHHHHHHHHHHH---HHHhcCCCcceeEEEEEEEcCCccCCCEEEEEEEE--eCC-EEEEEEEEc
Confidence 4689988888776542 11112222334455699999999999999998874 455 445555554
No 67
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=95.79 E-value=0.17 Score=40.15 Aligned_cols=67 Identities=15% Similarity=0.091 Sum_probs=43.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCce--eEEEEEeEEEecCCCCCCEEEEEEEEEEe----C-CcEEEEEEEEEE
Q 030085 53 VLHGGVSALIAESLASMGAHMASGFKR--VAGVQLTINHLKSAELGDLVRAVATPINL----G-KTIQVWQVRLWK 121 (183)
Q Consensus 53 ~lHGG~~a~LaD~A~g~a~~~~~~~~~--~vTv~l~i~flrpa~~Gd~l~a~a~vi~~----G-r~~~~~~v~i~~ 121 (183)
.+||-..++++..+.+- ....++.. ..-...+++|++|+.+||+|+++.+|... + +..+.+++++.-
T Consensus 58 Ia~G~~t~sl~~~l~~~--~~~~~~~~~~~~~g~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~~~~~~~~~ 131 (149)
T cd03450 58 IAHGFLTLSLLPALTPQ--LFRVEGVKMGVNYGLDKVRFPAPVPVGSRVRGRFTLLSVEELKGGGVQVTLEVTVEI 131 (149)
T ss_pred EECHHHHHHHHHHHHHh--cccCCCceEEEEeeccEEEeCcceeCCcEEEEEEEEEEEEEcCCCeEEEEEEEEEEE
Confidence 68998888887654321 11111111 11223479999999999999999998853 2 247777777775
No 68
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=95.75 E-value=0.17 Score=46.21 Aligned_cols=98 Identities=15% Similarity=0.136 Sum_probs=76.4
Q ss_pred cCCCCcCCCCcccHH-HHHHHHHHHHHHHHHHhcCC--------ceeEEEEE-eEEEecCCCCCC-EEEEEEEEEEeCCc
Q 030085 43 VTQNSCQPFKVLHGG-VSALIAESLASMGAHMASGF--------KRVAGVQL-TINHLKSAELGD-LVRAVATPINLGKT 111 (183)
Q Consensus 43 v~~~~~Np~G~lHGG-~~a~LaD~A~g~a~~~~~~~--------~~~vTv~l-~i~flrpa~~Gd-~l~a~a~vi~~Gr~ 111 (183)
..|.+.|..|..+|| =+.-|+|.+..+|.+.+... ..+||... .|+|.+|...|+ .+.+.|.|.+.||+
T Consensus 15 ~lp~~a~~s~~~~~~prigk~lE~ld~~a~~~hc~~~~~~~~~p~~~VtAsV~~i~f~~~~~~~~~d~i~~a~Vt~a~~s 94 (357)
T KOG2763|consen 15 VLPPRANHSGNTFVGPRIGKILEDLDALAVYRHCSEAEEGATLPRTIVTASVDRIDFEKPSEVGQVDIIIVAKVTWAGKS 94 (357)
T ss_pred CCCCccccccceecchHHHHHHHHhhhhhheeecccccccCccceEEEEeeEEEEEeeccccccceeEEEEEEEEecccc
Confidence 566777888999999 59999999988877544311 34678888 699999888884 57788999999999
Q ss_pred EEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEE
Q 030085 112 IQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLL 160 (183)
Q Consensus 112 ~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~ 160 (183)
.+-+++.|..+++ -+++-+++-+++.||.
T Consensus 95 SMEv~i~V~q~~~--------------------~~~~~~~~~kA~f~fV 123 (357)
T KOG2763|consen 95 SMEVSIYVMQEDL--------------------ATGEKSLVLKATFTFV 123 (357)
T ss_pred ceEEEEEEEEehh--------------------ccchhhheeeeEEEEE
Confidence 9999999986221 0145688999999998
No 69
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=95.64 E-value=0.24 Score=43.14 Aligned_cols=84 Identities=6% Similarity=0.072 Sum_probs=66.2
Q ss_pred cccHHHHHHHHHHH-HHHHHHHhc-C----CceeEEEEEeEEEecCCCCCCEEEEEEEEEEeCCcEEEEEEEEEEccccc
Q 030085 53 VLHGGVSALIAESL-ASMGAHMAS-G----FKRVAGVQLTINHLKSAELGDLVRAVATPINLGKTIQVWQVRLWKVKEVQ 126 (183)
Q Consensus 53 ~lHGG~~a~LaD~A-~g~a~~~~~-~----~~~~vTv~l~i~flrpa~~Gd~l~a~a~vi~~Gr~~~~~~v~i~~~~~~~ 126 (183)
.+|=-+++-+.|.- ...++.... . .....+++-+|.|.+|.+..|.+..+.+..+.|.--.+.+++||+
T Consensus 193 ~~~~~~lay~sD~~~l~~al~~~~~~~~~~~~~~aSLdhsi~Fh~~~~~d~W~L~~~~s~~a~~gr~~~~g~i~~----- 267 (286)
T PRK10526 193 RVHQYLLGYASDLNFLPVALQPHGIGFLEPGMQIATIDHSMWFHRPFNLNEWLLYSVESTSASSARGFVRGEFYT----- 267 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCccCCcceEEeeeEeEEEeCCCCCCceEEEEEECCcccCCceEEEEEEEC-----
Confidence 58888888777733 233333221 1 234678999999999999999999999999988888999999998
Q ss_pred CCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEEE
Q 030085 127 SDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLLC 161 (183)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~ 161 (183)
.+|+|||++.-.-++
T Consensus 268 --------------------~~G~LvAs~~Qegl~ 282 (286)
T PRK10526 268 --------------------QDGVLVASTVQEGVM 282 (286)
T ss_pred --------------------CCCCEEEEEEeeEEE
Confidence 789999999888764
No 70
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=95.44 E-value=0.078 Score=40.00 Aligned_cols=44 Identities=14% Similarity=0.136 Sum_probs=30.2
Q ss_pred ceeEEEEEeEEEecCCCCCCEEEEEEEEEEe----C-CcEE--EEEEEEEE
Q 030085 78 KRVAGVQLTINHLKSAELGDLVRAVATPINL----G-KTIQ--VWQVRLWK 121 (183)
Q Consensus 78 ~~~vTv~l~i~flrpa~~Gd~l~a~a~vi~~----G-r~~~--~~~v~i~~ 121 (183)
...+-.+.++.|.+|+++||+|+++++|... | .+.. .++.+++|
T Consensus 73 ~~~vh~~~~~~~h~Pl~~Gd~l~~~~~v~~v~~k~g~G~~~~v~~~~~~~~ 123 (132)
T PF13452_consen 73 TRLVHGEQDIEFHRPLRPGDTLTATSRVTDVYDKRGAGKGVFVTVETEYTD 123 (132)
T ss_dssp GGEEEEEEEEEESS--BSSEEEEEEEEEEEEEEES-TTSEEEEEEEEEEE-
T ss_pred hhEEecCcEEEEeCCCCCCCEEEEEEEEEEEEEecCCCCEEEEEEEEEEEC
Confidence 4577788999999999999999999998743 2 1244 44566776
No 71
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=95.14 E-value=0.12 Score=50.32 Aligned_cols=80 Identities=16% Similarity=0.123 Sum_probs=55.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCceeEE-EEEeEEEecCCCCCCEEEEEEEEEEe------CCcEEEEEEEEEEcccc
Q 030085 53 VLHGGVSALIAESLASMGAHMASGFKRVAG-VQLTINHLKSAELGDLVRAVATPINL------GKTIQVWQVRLWKVKEV 125 (183)
Q Consensus 53 ~lHGG~~a~LaD~A~g~a~~~~~~~~~~vT-v~l~i~flrpa~~Gd~l~a~a~vi~~------Gr~~~~~~v~i~~~~~~ 125 (183)
..||-..++++.... .. ..++..... -.-+++|++|+..||+|+++++|+.. ++.+..+++++++
T Consensus 575 Ia~G~l~~sl~~~l~---~~-~~~~~~~~~~g~~~~rF~~PV~~GDtl~~~~~V~e~~~~~~~~~g~v~~~~~v~n---- 646 (663)
T TIGR02278 575 VAHGYFVLSAAAGLF---VD-PAPGPVLANYGLENLRFLEPVGPGDTIQVRLTVKRKTPRDEKTYGVVEWAAEVVN---- 646 (663)
T ss_pred eeCHHHHHHHHHHHh---hc-cCccchhhhcccceEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEc----
Confidence 788988888885332 11 111211111 12389999999999999999999843 1227788888887
Q ss_pred cCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEEE
Q 030085 126 QSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLLC 161 (183)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~ 161 (183)
++|++|.++..++++
T Consensus 647 ---------------------q~G~~Vl~~~~~~lv 661 (663)
T TIGR02278 647 ---------------------QNGEPVATYDVLTLV 661 (663)
T ss_pred ---------------------CCCCEEEEEEEHHhc
Confidence 789999999888763
No 72
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=95.09 E-value=1.4 Score=37.71 Aligned_cols=103 Identities=11% Similarity=0.035 Sum_probs=71.6
Q ss_pred EEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhc--------------CCceeEEEEEeEEEecCCCCCCEEEEEE
Q 030085 38 IGCFRVTQNSCQPFKVLHGGVSALIAESLASMGAHMAS--------------GFKRVAGVQLTINHLKSAELGDLVRAVA 103 (183)
Q Consensus 38 ~~~m~v~~~~~Np~G~lHGG~~a~LaD~A~g~a~~~~~--------------~~~~~vTv~l~i~flrpa~~Gd~l~a~a 103 (183)
.-.+.+....+++.|.+.=-.++.++-.+++.-+.... .+...+-....|.+.|+...||+|.++.
T Consensus 5 ~~~~~v~~~e~d~~~~l~l~~l~~~~qe~a~~h~~~lG~~~~~~~~~~~l~~~~~~Wvl~r~~i~i~r~P~~~e~i~i~T 84 (261)
T PF01643_consen 5 EKEFTVRYYECDPNGRLKLSALLNYFQEAATEHAESLGFGMDYFGSTPELKKQGLAWVLSRYQIEIHRYPRWGEKITIET 84 (261)
T ss_dssp EEEEE--GGGB-TTSBB-HHHHHHHHHHHHHHHHHHTT-SHHH------HHCTTEEEEEEEEEEEESS--BTT-EEEEEE
T ss_pred EEEEEEcceeeCCCCCCCHHHHHHHHHHHHHHHHHHhCCCcccchhhhhHhhcCcEEEEEEEEEEEEecCCCCCEEEEEE
Confidence 34677888889999999887777777666554333221 1224677888999999999999999999
Q ss_pred EEEEeCCcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEEEecC
Q 030085 104 TPINLGKTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLLCNLP 164 (183)
Q Consensus 104 ~vi~~Gr~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~~~p 164 (183)
++...+|-.++=+.+|++. ++|++++.++..|.+.-.
T Consensus 85 w~~~~~~~~~~R~f~i~d~------------------------~~G~~l~~a~s~WvliD~ 121 (261)
T PF01643_consen 85 WPSGFKRFFAYRDFEIYDA------------------------EDGELLARATSIWVLIDL 121 (261)
T ss_dssp EEEEE-SSEEEEEEEEE--------------------------TTS-EEEEEEEEEEEEET
T ss_pred EeccCCCcEEEEEEEEEEC------------------------CCCcEEEEEEEEEEEEEh
Confidence 9999999999999999972 579999999999985443
No 73
>PRK05174 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; Validated
Probab=95.03 E-value=1.6 Score=35.70 Aligned_cols=94 Identities=7% Similarity=-0.103 Sum_probs=56.1
Q ss_pred EEEEEeCC-------EEEEEEEcCCCCcCCCCccc-----HHHHH--HHHHHHHHHHHHHhcCCceeEEEEEeEEEecCC
Q 030085 28 ELEELTPE-------RIIGCFRVTQNSCQPFKVLH-----GGVSA--LIAESLASMGAHMASGFKRVAGVQLTINHLKSA 93 (183)
Q Consensus 28 ~~~~~~~g-------~v~~~m~v~~~~~Np~G~lH-----GG~~a--~LaD~A~g~a~~~~~~~~~~vTv~l~i~flrpa 93 (183)
++.+++++ .++++..++++.-=..|..+ =|++. ++|=.++.++............-.-+..|.+++
T Consensus 39 rV~~~~~~gg~~~~g~i~a~k~v~~~e~ff~gHFp~~PvmPG~L~iEamAQ~~~~~~~~~~~~~~g~l~g~~~~kfr~~v 118 (172)
T PRK05174 39 RITEISETGGEFGKGYIVAELDINPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGPGKGRALGVGEVKFTGQV 118 (172)
T ss_pred EEEEEcCCCCcccceEEEEEEECCCCCccccCCCCCCCcCchHHHHHHHHHHHHHHHhcccccCceEEeeccEEEECccC
Confidence 45566665 69999988886521122222 24432 233333333321111111122222369999999
Q ss_pred CCCCE-EEEEEEEEEe---CCcEEEEEEEEEE
Q 030085 94 ELGDL-VRAVATPINL---GKTIQVWQVRLWK 121 (183)
Q Consensus 94 ~~Gd~-l~a~a~vi~~---Gr~~~~~~v~i~~ 121 (183)
.+|+. ++.+.++.+. .+.+.+.+++++-
T Consensus 119 ~Pgd~~l~l~v~i~~~~~~~~~~~~~~~~i~v 150 (172)
T PRK05174 119 LPTAKKVTYEIDIKRVINRKLVMGIADGRVLV 150 (172)
T ss_pred cCCCEEEEEEEEEEEEecCCCCEEEEEEEEEE
Confidence 99997 7888888875 5679999999995
No 74
>PLN02864 enoyl-CoA hydratase
Probab=94.87 E-value=0.45 Score=42.23 Aligned_cols=92 Identities=15% Similarity=0.025 Sum_probs=58.1
Q ss_pred EEEEEEcCCCCcCC---------CCcccHHHHHHHHHHHHHHHHHHhcCCceeEEEEEeEEEecCCCCCCEEEEEEEEEE
Q 030085 37 IIGCFRVTQNSCQP---------FKVLHGGVSALIAESLASMGAHMASGFKRVAGVQLTINHLKSAELGDLVRAVATPIN 107 (183)
Q Consensus 37 v~~~m~v~~~~~Np---------~G~lHGG~~a~LaD~A~g~a~~~~~~~~~~vTv~l~i~flrpa~~Gd~l~a~a~vi~ 107 (183)
..+.-..+|-|.++ .-++||=..++++-.+. .....++....-..++++|.+|+.+||+|+++.+.
T Consensus 204 a~lSGD~NPiH~d~~~A~~~gf~~~IaHGm~t~g~~~~~~---~~~~~~~~~~~~~~~~~rF~~PV~pGdtl~~~~~~-- 278 (310)
T PLN02864 204 YRLSGDYNPLHSDPMFAKVAGFTRPILHGLCTLGFAVRAV---IKCFCNGDPTAVKTISGRFLLHVYPGETLVTEMWL-- 278 (310)
T ss_pred HHhhCCCCcccCCHHHHhhCCCCCceeccHHHHHHHHHHH---HhhhcCCCCceEEEEEEEEcCCccCCCEEEEEEEe--
Confidence 34455666666663 24589988777655431 11112222233456899999999999999877764
Q ss_pred eCCcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEE
Q 030085 108 LGKTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLL 160 (183)
Q Consensus 108 ~Gr~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~ 160 (183)
.| ....+++++ + ++|+++..+++++.
T Consensus 279 ~~-~~v~~~~~~-~-------------------------~~g~~vl~G~a~~~ 304 (310)
T PLN02864 279 EG-LRVIYQTKV-K-------------------------ERNKAVLSGYVDLR 304 (310)
T ss_pred CC-CEEEEEEEE-e-------------------------cCCeEEEEEEEEEe
Confidence 34 345566665 3 45788888888775
No 75
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=94.77 E-value=0.19 Score=48.94 Aligned_cols=80 Identities=16% Similarity=0.150 Sum_probs=55.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCceeEEEE-EeEEEecCCCCCCEEEEEEEEEEe------CCcEEEEEEEEEEcccc
Q 030085 53 VLHGGVSALIAESLASMGAHMASGFKRVAGVQ-LTINHLKSAELGDLVRAVATPINL------GKTIQVWQVRLWKVKEV 125 (183)
Q Consensus 53 ~lHGG~~a~LaD~A~g~a~~~~~~~~~~vTv~-l~i~flrpa~~Gd~l~a~a~vi~~------Gr~~~~~~v~i~~~~~~ 125 (183)
.+||-..++++-... . ...++......- -+++|++|+..||+|+++.+|+.. ++.+..+++++++
T Consensus 587 ia~G~l~~sl~~~l~---~-~~~~~~~~~~~g~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~n---- 658 (675)
T PRK11563 587 VAHGYFVLSAAAGLF---V-DPAPGPVLANYGLENLRFLTPVKPGDTIQVRLTCKRKTPRRQAPYGVVRWDVEVTN---- 658 (675)
T ss_pred eeCHHHHHHHHHHHh---h-ccCccchhhhcccceEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEE----
Confidence 678887777665432 1 111111111111 179999999999999999999955 1247888888888
Q ss_pred cCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEEE
Q 030085 126 QSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLLC 161 (183)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~ 161 (183)
++|++|.++..++++
T Consensus 659 ---------------------q~G~~V~~~~~~~lv 673 (675)
T PRK11563 659 ---------------------QDGELVATYDILTLV 673 (675)
T ss_pred ---------------------CCCCEEEEEEEHHhc
Confidence 789999999988773
No 76
>TIGR01749 fabA beta-hydroxyacyl-[acyl carrier protein] dehydratase FabA. This enzyme, FabA, shows overlapping substrate specificity with FabZ with regard to chain length in fatty acid biosynthesis. It is commonly designated 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) as if it were specific for that chain length, but its specificity is broader; it is active even in the initiation of fatty acid biosynthesis. This enzyme can also isomerize trans-2-decenoyl-ACP to cis-3-decenoyl-ACP to bypass reduction by FabI and instead allow biosynthesis of unsaturated fatty acids. FabA cannot elongate unsaturated fatty acids.
Probab=94.24 E-value=2.5 Score=34.45 Aligned_cols=93 Identities=5% Similarity=-0.058 Sum_probs=55.2
Q ss_pred EEEEEeC--C-----EEEEEEEcCCCCc---C--CCCcccHHHHH--HHHHHHHHHHHHHhcCCc-eeEEEEEeEEEecC
Q 030085 28 ELEELTP--E-----RIIGCFRVTQNSC---Q--PFKVLHGGVSA--LIAESLASMGAHMASGFK-RVAGVQLTINHLKS 92 (183)
Q Consensus 28 ~~~~~~~--g-----~v~~~m~v~~~~~---N--p~G~lHGG~~a--~LaD~A~g~a~~~~~~~~-~~vTv~l~i~flrp 92 (183)
++.++++ | .++++..++++.- . |..-+-=|++. ++|=.++.++........ ....++ +..|.++
T Consensus 36 ~V~~~~~~gG~~~~g~i~a~k~Vs~~e~ff~gHFp~~PvmPG~L~iEamAQ~~~~~~~~~~~~~~g~l~gi~-~~kfr~~ 114 (169)
T TIGR01749 36 RIVEISETGGKFGKGYVEAELDIRPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFFLGWLGGPGRGRALGVG-EVKFTGQ 114 (169)
T ss_pred EEEEEecCCCcccccEEEEEEEcCCCCcceeCCCCCCCcCchHHHHHHHHHHHHHHHhccccCCceEEeecc-EEEEccC
Confidence 4556666 3 7898888888642 1 22122234432 233333322221111112 234444 8999999
Q ss_pred CCCCCEE-EEEEEEEEe---CCcEEEEEEEEEE
Q 030085 93 AELGDLV-RAVATPINL---GKTIQVWQVRLWK 121 (183)
Q Consensus 93 a~~Gd~l-~a~a~vi~~---Gr~~~~~~v~i~~ 121 (183)
+.+|+.+ ..+.++.+. .+.+..++++++-
T Consensus 115 v~Pgd~~~~l~v~i~~~~~~~~~~~~~~~~i~v 147 (169)
T TIGR01749 115 VLPTAKKVTYRIHFKRVINRRLVMGIADGEVLV 147 (169)
T ss_pred EecCCeEEEEEEEEEEEeecCCcEEEEEEEEEE
Confidence 9999885 788887774 4568999999995
No 77
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=94.24 E-value=0.15 Score=45.31 Aligned_cols=81 Identities=12% Similarity=0.066 Sum_probs=62.2
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHhcCCceeEEEEEeEEEecCCCCCCEEEEEEEEEEeCCcEEEEEEEEEEcccccCCC
Q 030085 50 PFKVLHGGVSALIAESLASMGAHMASGFKRVAGVQLTINHLKSAELGDLVRAVATPINLGKTIQVWQVRLWKVKEVQSDD 129 (183)
Q Consensus 50 p~G~lHGG~~a~LaD~A~g~a~~~~~~~~~~vTv~l~i~flrpa~~Gd~l~a~a~vi~~Gr~~~~~~v~i~~~~~~~~~~ 129 (183)
..--++||-+++-+=.| |..+ .+. .-+-=+++.-||+|...-++|.-..+.+|-||+...-+|+.+
T Consensus 30 g~~~vFGGqvvaQAL~A---a~~T-V~~-~r~vhSlh~yFl~pgd~~~pi~y~Ve~lRdG~sfs~rrV~ai--------- 95 (289)
T COG1946 30 GLRRVFGGQVVAQALVA---ALRT-VPE-DRVVHSLHSYFLRPGDPEQPIIYDVERLRDGRSFSTRRVDAI--------- 95 (289)
T ss_pred CCccccccchHHHHHHH---HHhh-cCC-CCCcceehhhhcCCCCcCCceEEEEEeccCCCceEeEEEEEE---------
Confidence 34567888887765432 2222 232 233446777999999999899999999999999999999998
Q ss_pred CCCCCCCCCcCCCCCCCCCCcEEEEEEEEEEE
Q 030085 130 GRDHDADHHHHNNSTSSSSSIMISSSTVTLLC 161 (183)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~ 161 (183)
.+|++|.++++.|.+
T Consensus 96 -----------------Q~g~~If~~~ASF~~ 110 (289)
T COG1946 96 -----------------QHGKLIFSATASFQV 110 (289)
T ss_pred -----------------ECCEEEEEEEeeccC
Confidence 469999999999973
No 78
>PLN02868 acyl-CoA thioesterase family protein
Probab=94.09 E-value=0.38 Score=43.79 Aligned_cols=81 Identities=10% Similarity=-0.023 Sum_probs=63.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHh-c-CC--ceeEEEEEeEEEecCCCCCCEEEEEEEEEEeCCcEEEEEEEEEEcccccCC
Q 030085 53 VLHGGVSALIAESLASMGAHMA-S-GF--KRVAGVQLTINHLKSAELGDLVRAVATPINLGKTIQVWQVRLWKVKEVQSD 128 (183)
Q Consensus 53 ~lHGG~~a~LaD~A~g~a~~~~-~-~~--~~~vTv~l~i~flrpa~~Gd~l~a~a~vi~~Gr~~~~~~v~i~~~~~~~~~ 128 (183)
.+|=.+++.+.|...-..+... . .. ...++++-+|.|.+|....+.+..+.+..+.|.--++.+++||+
T Consensus 326 ~~~~a~lay~sD~~~l~~~l~~~~~~~~~~~~aSLdhsi~Fh~~~~~d~W~l~~~~s~~a~~gr~~~~g~l~~------- 398 (413)
T PLN02868 326 ALHRCVAAYASDLIFLGTSLNPHRTKGLKFAALSLDHSMWFHRPFRADDWLLFVIVSPAAHNGRGFATGHMFN------- 398 (413)
T ss_pred HHHHHHHHHHhhhhhhHhhhccccCCCCceEEEEcceeEEEecCCCCCceEEEEEECCccCCCcceEEEEEEC-------
Confidence 5788899999996542222211 1 11 23678888999999999999999999999998888888999998
Q ss_pred CCCCCCCCCCcCCCCCCCCCCcEEEEEEEE
Q 030085 129 DGRDHDADHHHHNNSTSSSSSIMISSSTVT 158 (183)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T 158 (183)
.+|++||+++--
T Consensus 399 ------------------~~G~LvAs~~Qe 410 (413)
T PLN02868 399 ------------------RKGELVVSLTQE 410 (413)
T ss_pred ------------------CCCCEEEEEEee
Confidence 789999998753
No 79
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=93.18 E-value=3.7 Score=32.96 Aligned_cols=108 Identities=15% Similarity=-0.014 Sum_probs=70.7
Q ss_pred EEEE-EeCC-EEEEEEEcCC--CCc---CCCCcccHHHHHHHHHH-HHHHHHHHhcC--CceeEEEEE-eEEEecCCCCC
Q 030085 28 ELEE-LTPE-RIIGCFRVTQ--NSC---QPFKVLHGGVSALIAES-LASMGAHMASG--FKRVAGVQL-TINHLKSAELG 96 (183)
Q Consensus 28 ~~~~-~~~g-~v~~~m~v~~--~~~---Np~G~lHGG~~a~LaD~-A~g~a~~~~~~--~~~~vTv~l-~i~flrpa~~G 96 (183)
++.+ .+++ .+.+...++. ++. .|.--+-.|++-.=+=. ++|+.+..... ++.+.-+.+ ++.|.+|+.+|
T Consensus 24 rv~~~~~~g~~i~a~k~Vt~nepfF~gHFP~~PimPGVLileamaQ~~g~~~~~~~~~~~~~~~~~gid~~kF~~~V~PG 103 (147)
T COG0764 24 RVLEIDEEGKRIVAIKNVTINEPFFTGHFPGDPIMPGVLILEAMAQAAGFLLGWLLGNKGKLGYFLGIDNAKFKRPVLPG 103 (147)
T ss_pred eeeeeccCCcEEEEEEccCCCCCeeCCcCCCCCCcchhHHHHHHHHHHHHHHhccccCCccEEEEEEecceeecCccCCC
Confidence 4444 3343 5656655544 333 35666778887543311 11222222222 123444444 79999999999
Q ss_pred CEEEEEEEEEEeC-CcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEEE
Q 030085 97 DLVRAVATPINLG-KTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLLC 161 (183)
Q Consensus 97 d~l~a~a~vi~~G-r~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~ 161 (183)
|.+..+.+.++.+ +.+....++.+ -+|++++.++.+++.
T Consensus 104 d~l~l~~~~~~~~~~~~~~~~~~a~--------------------------Vdg~~v~~a~~~~~~ 143 (147)
T COG0764 104 DQLELEVKLLKSRRLGIGKAKGVAT--------------------------VDGKVVAEAELLFAG 143 (147)
T ss_pred CEEEEEEEEEEecccceEEEEEEEE--------------------------ECCEEEEEEEEEEEE
Confidence 9999999999999 88888888887 468999999999884
No 80
>PF03756 AfsA: A-factor biosynthesis hotdog domain; InterPro: IPR005509 The AfsA family are key enzymes in A-factor biosynthesis, which is essential for streptomycin production and resistance. This domain is distantly related to the thioester dehydratase FabZ family and therefore has a Hotdog domain [].
Probab=92.41 E-value=3.8 Score=31.13 Aligned_cols=100 Identities=12% Similarity=0.041 Sum_probs=62.0
Q ss_pred CCEEEEEEEcCCCC--cC-CCCcccHHHHHHHHHHH---HHHHHHHhc--C-CceeEEEEEeEEEecCCCCCCEEEEEEE
Q 030085 34 PERIIGCFRVTQNS--CQ-PFKVLHGGVSALIAESL---ASMGAHMAS--G-FKRVAGVQLTINHLKSAELGDLVRAVAT 104 (183)
Q Consensus 34 ~g~v~~~m~v~~~~--~N-p~G~lHGG~~a~LaD~A---~g~a~~~~~--~-~~~~vTv~l~i~flrpa~~Gd~l~a~a~ 104 (183)
++...+.+.+...| .. ..+--|-|.+ |+|.+ +-+.++... + +...+-.+++++|.+++....++.++++
T Consensus 19 ~~~~~~~~~~p~~h~~~~dh~~dh~~gml--l~Ea~RQa~~~~~h~~~~vp~~~~~~~~~l~~~f~~~~e~~~P~~~~~~ 96 (132)
T PF03756_consen 19 DGRFRARLQWPRSHPFFFDHPGDHVPGML--LLEAARQAGIALAHRFYGVPLDHQFVLTSLDFTFSRFAELDVPADLTVR 96 (132)
T ss_pred CCEEEEEEEcCCCCccccCCCCCccChHH--HHHHHHHHHHHhhccccCCCCCceEEEEEEEEEEccccccCCCEEEEEE
Confidence 45666666665554 22 2233344443 45544 322222222 2 2456778999999999876667777777
Q ss_pred EEEeCC-----cEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEEE
Q 030085 105 PINLGK-----TIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLLC 161 (183)
Q Consensus 105 vi~~Gr-----~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~ 161 (183)
+..... +-..++++++. +|+++|+++.++-|
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~q--------------------------~g~~~a~~~~~~tc 132 (132)
T PF03756_consen 97 ITCRDRRGGRPRGLRFRVTVSQ--------------------------GGRVVATASMTFTC 132 (132)
T ss_pred EEeccccCCccceEEEEEEEEE--------------------------CCEEEEEEEEEEEC
Confidence 664333 46677888884 69999999999865
No 81
>PLN02864 enoyl-CoA hydratase
Probab=90.89 E-value=3 Score=37.06 Aligned_cols=63 Identities=17% Similarity=0.109 Sum_probs=47.7
Q ss_pred ceeEEEEEeEEEecCCCCCCEEEEEEEEEEe---CCc-EEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEE
Q 030085 78 KRVAGVQLTINHLKSAELGDLVRAVATPINL---GKT-IQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMIS 153 (183)
Q Consensus 78 ~~~vTv~l~i~flrpa~~Gd~l~a~a~vi~~---Gr~-~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA 153 (183)
.+.+=.+-+|.|.||+..|+.+.+++++... |+. +..++.++++. .+|++++
T Consensus 92 ~~lVHgeq~i~~~rPlp~~~~l~~~~~v~~v~dkG~ga~v~~~~~~~d~------------------------~~Ge~v~ 147 (310)
T PLN02864 92 SLLLHGQQYIEIYKPIPSSASVRNKVSIAGLHDKGKAAILELETLSYEK------------------------DSGELLC 147 (310)
T ss_pred hheeeccceEEEECCCCCCCEEEEEEEEEEEEeCCCcEEEEEEEEEEeC------------------------CCCcEEE
Confidence 4567777789999999999999999998744 543 23455556551 4799999
Q ss_pred EEEEEEEEecC
Q 030085 154 SSTVTLLCNLP 164 (183)
Q Consensus 154 ~~t~T~~~~~p 164 (183)
+.+.|+++.-.
T Consensus 148 t~~st~~~Rg~ 158 (310)
T PLN02864 148 MNRSTIFLRGA 158 (310)
T ss_pred EEEEEEEEeCC
Confidence 99999997653
No 82
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=90.67 E-value=2.3 Score=37.93 Aligned_cols=86 Identities=13% Similarity=0.050 Sum_probs=63.3
Q ss_pred cccHHHHHHHHHHHHHH-HHHHhc-----CCceeEEEEEeEEEecCCCCCCEEEEEEEEEEeCCcEEEEEEEEEEccccc
Q 030085 53 VLHGGVSALIAESLASM-GAHMAS-----GFKRVAGVQLTINHLKSAELGDLVRAVATPINLGKTIQVWQVRLWKVKEVQ 126 (183)
Q Consensus 53 ~lHGG~~a~LaD~A~g~-a~~~~~-----~~~~~vTv~l~i~flrpa~~Gd~l~a~a~vi~~Gr~~~~~~v~i~~~~~~~ 126 (183)
.+|=-.++-+-|...=- |..... +.-.++++|=+|-|+||.+.+|.|....+.-.....-+.+++++++
T Consensus 193 ~~~~~lLay~SD~~ll~tal~~Hg~~~~~~~~~~aSLDHs~wFhrp~~~ddWlLy~~~sp~A~~~rgl~~G~lf~----- 267 (289)
T COG1946 193 RLHQALLAYLSDFTLLDTALQPHGLGFLTPGIQVASLDHSMWFHRPFRLDDWLLYAQESPSASGGRGLVRGQLFD----- 267 (289)
T ss_pred HHHHHHHHHhccchhhhhhhccCCCccccCcceEeeccceEEEeccccCCCEEEEEeeCCcccCCcceeeeEEEc-----
Confidence 56777788777865311 111111 2346889999999999999999988776666555555888999998
Q ss_pred CCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEEEec
Q 030085 127 SDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLLCNL 163 (183)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~~~ 163 (183)
.+|+|||+..--.++..
T Consensus 268 --------------------r~G~LiA~~~QEG~~r~ 284 (289)
T COG1946 268 --------------------RDGQLIASVVQEGLIRY 284 (289)
T ss_pred --------------------CCCCEEEEEeeeEEEec
Confidence 78999999988877543
No 83
>PF02551 Acyl_CoA_thio: Acyl-CoA thioesterase; InterPro: IPR003703 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH). They consequently have the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. They may also be involved in the metabolic regulation of peroxisome proliferation. Thioesters play a central role in cells as they participate in metabolism, membrane synthesis, signal transduction, and gene regulation. Thioesterases catalyse the hydrolysis of thioesters to the thiol and carboxylic acid components. Many thioesterases have a hot dog fold, including YciA from Escherichia coli and its close sequence homologue HI0827 from Haemophilus influenzae (HiYciA) []. In Helicobacter pylori, YbgC also belongs to the hot-dog family of proteins, with a epsilongamma tetrameric arrangement []. YbgC proteins are bacterial acyl-CoA thioesterases associated with the Tol-Pal system. This system is important for cell envelope integrity and is part of the cell division machinery. However, the E. coli thioesterase II reveals a new tertiary fold: a 'double hot dog'. It has an internal repeat with a basic unit that is structurally similar to the recently described beta-hydroxydecanoyl thiol ester dehydrase []. ; GO: 0016291 acyl-CoA thioesterase activity, 0006637 acyl-CoA metabolic process; PDB: 1C8U_B 1TBU_B 3U0A_B.
Probab=88.95 E-value=3.3 Score=32.95 Aligned_cols=54 Identities=6% Similarity=0.008 Sum_probs=40.9
Q ss_pred eeEEEEEeEEEecCCCCCCEEEEEEEEEEeCCcEEEEEEEEE-EcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEE
Q 030085 79 RVAGVQLTINHLKSAELGDLVRAVATPINLGKTIQVWQVRLW-KVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTV 157 (183)
Q Consensus 79 ~~vTv~l~i~flrpa~~Gd~l~a~a~vi~~Gr~~~~~~v~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~ 157 (183)
..+|+|=+|-|.||.+..|.+..+-+-......=+++++++| + .+|+|||+..-
T Consensus 74 ~~vSlDHs~wFHrpfr~ddWlLY~~~sp~A~~~Rgl~~G~~f~~-------------------------q~G~Lvas~~Q 128 (131)
T PF02551_consen 74 FQVSLDHSMWFHRPFRADDWLLYAIESPSASGGRGLVRGRFFDT-------------------------QDGELVASVVQ 128 (131)
T ss_dssp EEEEEEEEEEE-S--BTTS-EEEEEEEEEEETTEEEEEECCEEE-------------------------CTTEEEEEEEE
T ss_pred cEEecceeEEEcCCCCCCCCEEEEEEcCccccCcccccCceEec-------------------------CCCCEEEEEec
Confidence 345999999999999999988877777666666688999999 6 78999998653
No 84
>PF14765 PS-DH: Polyketide synthase dehydratase; PDB: 3KG7_D 3KG9_A 3KG8_B 3HRR_A 3HRQ_A 3EL6_A 3KG6_B 2VZ8_A 2VZ9_A.
Probab=86.93 E-value=13 Score=31.10 Aligned_cols=101 Identities=12% Similarity=0.147 Sum_probs=68.3
Q ss_pred CEEEEEEEcCCCCcC-C-CCcccHHHHHHHHHHHHHHHHHHh----cCCceeEEEEE-eEEEec-CCCCCCEEEEEEEEE
Q 030085 35 ERIIGCFRVTQNSCQ-P-FKVLHGGVSALIAESLASMGAHMA----SGFKRVAGVQL-TINHLK-SAELGDLVRAVATPI 106 (183)
Q Consensus 35 g~v~~~m~v~~~~~N-p-~G~lHGG~~a~LaD~A~g~a~~~~----~~~~~~vTv~l-~i~flr-pa~~Gd~l~a~a~vi 106 (183)
+.+.+++.+.+.... . .-.+|. +++|.++-.++... .....++-+.+ ++.+.+ +...++.+.+.++..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~l~P----~llD~~lq~~~~~~~~~~~~~~~~lP~~i~~~~~~~~~~~~~~~~~~~~~~~ 257 (295)
T PF14765_consen 182 GEALAEVRLPDDPASDPDPFVLHP----ALLDAALQAAGLALWEDDDRGRVFLPVSIERIRIFRAPPPPGDRLYVYARLV 257 (295)
T ss_dssp SEEEEEEECGTTTGGGGGGSSS-H----HHHHHHHHGHGCCHTSTTTTTSEEEEEEEEEEEESSS--SSTSEEEEEEEEE
T ss_pred ccceEEEEEEeeccCCCCceeECH----HHHHHHHHHHHHHhccccCCCCEEcccEeCEEEEEeccCCCCCEEEEEEEEe
Confidence 777777777754331 1 234455 57787776332111 12245666777 577774 567788999999999
Q ss_pred EeCCcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEEEecC
Q 030085 107 NLGKTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLLCNLP 164 (183)
Q Consensus 107 ~~Gr~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~~~~p 164 (183)
..+.....+++.++| ++|++++..+.--+..++
T Consensus 258 ~~~~~~~~~dv~v~d-------------------------~~G~~~~~~~gl~~~~~~ 290 (295)
T PF14765_consen 258 KSDDDTITGDVTVFD-------------------------EDGRVVAELEGLTFRRVP 290 (295)
T ss_dssp STTTTEEEEEEEEEE-------------------------TTSBEEEEEEEEEEEEEE
T ss_pred cccceEEEEEEEEEC-------------------------CCCCEEEEEccEEEEECC
Confidence 889999999999999 789999998887664544
No 85
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=81.04 E-value=29 Score=29.53 Aligned_cols=97 Identities=8% Similarity=-0.074 Sum_probs=61.6
Q ss_pred CCEEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhcCCceeEEEEEeEEEecCCCCCCEEEEEEEEEEeC-CcE
Q 030085 34 PERIIGCFRVTQNSCQPFKVLHGGVSALIAESLASMGAHMASGFKRVAGVQLTINHLKSAELGDLVRAVATPINLG-KTI 112 (183)
Q Consensus 34 ~g~v~~~m~v~~~~~Np~G~lHGG~~a~LaD~A~g~a~~~~~~~~~~vTv~l~i~flrpa~~Gd~l~a~a~vi~~G-r~~ 112 (183)
+......++++...+...|-+.=-...-++-.+...... ....-.++.|+|.+.+..||.|.+...+.... ...
T Consensus 163 ~~~~~~~~~vr~sDiD~N~HVNN~~Yl~w~~d~lp~~~~-----~~~~~~~i~I~y~~E~~~gd~i~~~~~~~~~~~~~~ 237 (261)
T PF01643_consen 163 EPEFEKEFTVRYSDIDMNGHVNNARYLDWALDALPEEFL-----EKYQIKSIDINYKKEIRYGDTITSYTEVEKDEEEDG 237 (261)
T ss_dssp TTSECEEEE--GGGEETTTCE-HHHHHHHHHCCS-HHHH-----CCEEEEEEEEEE-S--BTT-EEEEEEEEEEECCTTE
T ss_pred hhheeecccccHHHCCCCCCcCHHHHHHHHHHhCcchhh-----ccCCcEEEEEEEccccCCCCEEEEEEEEcccccCCc
Confidence 345667788888777777788776666655444322221 23556789999999999999999888876443 445
Q ss_pred EEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEE
Q 030085 113 QVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLL 160 (183)
Q Consensus 113 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~ 160 (183)
..+.-.|++ ++|+.+|.+...|.
T Consensus 238 ~~~~h~i~~-------------------------~~g~~~~~~~~~W~ 260 (261)
T PF01643_consen 238 LSTLHEIRN-------------------------EDGEEVARARTEWQ 260 (261)
T ss_dssp EEEEEEEEC-------------------------T-TCEEEEEEEEEE
T ss_pred eEEEEEEEc-------------------------CCCceEEEEEEEEc
Confidence 566777886 45999999988764
No 86
>KOG3016 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=79.76 E-value=9.7 Score=34.13 Aligned_cols=80 Identities=14% Similarity=0.096 Sum_probs=60.3
Q ss_pred CcccHHHHHHHHHHHHHHHHHHh-c-CC--ceeEEEEEeEEEecC-CCCCCEEEEEEEEEEeCCcEEEEEEEEEEccccc
Q 030085 52 KVLHGGVSALIAESLASMGAHMA-S-GF--KRVAGVQLTINHLKS-AELGDLVRAVATPINLGKTIQVWQVRLWKVKEVQ 126 (183)
Q Consensus 52 G~lHGG~~a~LaD~A~g~a~~~~-~-~~--~~~vTv~l~i~flrp-a~~Gd~l~a~a~vi~~Gr~~~~~~v~i~~~~~~~ 126 (183)
-.+|=-++|.|.|..+--.+... . .+ ...++++=+|-|.++ .+..|.+.-++.....|..=+++++++|+
T Consensus 208 ~r~h~~~vaylSD~~ll~Ta~~~h~~~g~~s~~~SLdHsiwfH~~e~~iddwilye~~s~~a~~sr~~i~Grlw~----- 282 (294)
T KOG3016|consen 208 ERLHRWVVAYLSDLILLTTALNPHNREGMSSMALSLDHSIWFHRPEVRADDWLLYECVSPIATGSRGFIEGKLWN----- 282 (294)
T ss_pred hhhceehHhhhhhHHHHHhcccchhhccceeeecccceeEEEecccccccceEEEEEEeccccCcceeEeeeEEc-----
Confidence 34666788999997654333221 1 11 234666668999998 79999999999999998888999999998
Q ss_pred CCCCCCCCCCCCcCCCCCCCCCCcEEEEEE
Q 030085 127 SDDGRDHDADHHHHNNSTSSSSSIMISSST 156 (183)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t 156 (183)
.+|+++++..
T Consensus 283 --------------------rdG~l~~s~~ 292 (294)
T KOG3016|consen 283 --------------------RDGRLICSTE 292 (294)
T ss_pred --------------------cCCcEEEEec
Confidence 7899998753
No 87
>PLN02370 acyl-ACP thioesterase
Probab=58.25 E-value=1.1e+02 Score=28.70 Aligned_cols=65 Identities=5% Similarity=-0.113 Sum_probs=41.9
Q ss_pred EEEEEEEcCCCCcCCCCcccHHHHHHHHHHHHHHHHHHhcCCceeEEEEEeEEEecCCCCCCEEEEEEEE
Q 030085 36 RIIGCFRVTQNSCQPFKVLHGGVSALIAESLASMGAHMASGFKRVAGVQLTINHLKSAELGDLVRAVATP 105 (183)
Q Consensus 36 ~v~~~m~v~~~~~Np~G~lHGG~~a~LaD~A~g~a~~~~~~~~~~vTv~l~i~flrpa~~Gd~l~a~a~v 105 (183)
.+...++++...+...|.+.=.....++-.+...-.. ....-..+.|+|.+.+..|+.|.+...+
T Consensus 301 ~~~~~~~VRysDLD~NgHVNNvkYi~Wild~lP~e~l-----~~~~l~~i~I~Y~kE~~~gd~V~s~~~~ 365 (419)
T PLN02370 301 YIRKGLTPRWSDLDVNQHVNNVKYIGWILESAPPPIM-----ESHELAAITLEYRRECGRDSVLQSLTAV 365 (419)
T ss_pred ceeeeeeecHHHCcccCccccHHHHHHHHhhCchhhh-----hcceEEEEEEEEcccCCCCCEEEEEEee
Confidence 3445577777777777777666666554333221111 2234567899999999999988876654
No 88
>PF11684 DUF3280: Protein of unknown function (DUF2380); InterPro: IPR021698 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=53.52 E-value=41 Score=26.82 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=36.7
Q ss_pred CCEEEEEEEEEEeCCcEEEEEEEEEEcccccCCCCCCCCCCCCcCCCCCCCCCCcEEEEEEEEEE
Q 030085 96 GDLVRAVATPINLGKTIQVWQVRLWKVKEVQSDDGRDHDADHHHHNNSTSSSSSIMISSSTVTLL 160 (183)
Q Consensus 96 Gd~l~a~a~vi~~Gr~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvA~~t~T~~ 160 (183)
|-.+.+.++|.|...-+..+.+.++|+ ++|+++...++.+-
T Consensus 80 GAd~~lvG~VqKvS~Lil~~~~~v~Dv------------------------~tg~~v~~~~~diR 120 (140)
T PF11684_consen 80 GADYVLVGEVQKVSNLILNMNVYVRDV------------------------ETGKVVRGRSVDIR 120 (140)
T ss_pred CCCEEEEEEEechhhhheeeeEEEEEC------------------------CCCCEEeeeeeeEe
Confidence 446899999999999999999999996 78999999988875
No 89
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=51.31 E-value=1.7e+02 Score=25.83 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=39.8
Q ss_pred eeEEEEEeEEEecCCCCCCEEEEEEEEEEeCCcEEEEEEEEEE
Q 030085 79 RVAGVQLTINHLKSAELGDLVRAVATPINLGKTIQVWQVRLWK 121 (183)
Q Consensus 79 ~~vTv~l~i~flrpa~~Gd~l~a~a~vi~~Gr~~~~~~v~i~~ 121 (183)
..+-+...|.++||..-|+.++++-++....+..++-.+++.+
T Consensus 55 ~WiV~~~~i~~ir~pef~e~iti~t~~~s~~~ffcyrrf~~~~ 97 (250)
T COG3884 55 LWIVRRTEIDVIRPPEFGEMITIETWCSSISNFFCYRRFRLDG 97 (250)
T ss_pred eEEEEEEEEEEeeccccCCcceEEEeeccccceEEEEEEEEec
Confidence 4567888999999999999999999999999999999999996
No 90
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=49.06 E-value=92 Score=35.67 Aligned_cols=80 Identities=9% Similarity=-0.009 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHh--cCCceeEEEEE-eEEEecCCCCCCEEEEEEEEEEeCCcEEEEEEEEEEcccccCCCCCCCCCC
Q 030085 60 ALIAESLASMGAHMA--SGFKRVAGVQL-TINHLKSAELGDLVRAVATPINLGKTIQVWQVRLWKVKEVQSDDGRDHDAD 136 (183)
Q Consensus 60 a~LaD~A~g~a~~~~--~~~~~~vTv~l-~i~flrpa~~Gd~l~a~a~vi~~Gr~~~~~~v~i~~~~~~~~~~~~~~~~~ 136 (183)
--+.|.++-++.... ..+..+.-..+ ++...+|...|+..+++.+|++...+...+++.+++
T Consensus 2493 p~~~D~~~Q~~~vW~~~~~g~~sLP~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~--------------- 2557 (2582)
T TIGR02813 2493 PFAEDILLQAMLVWARLKYGAASLPSSIGEFVSYRPVSLGEKFYLKLDVVKSSGRSLVANIELYH--------------- 2557 (2582)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCCcccceEEEecCCCCCCceEEEEEEEeccCCeEEEEEEEEC---------------
Confidence 457787765553322 11233444444 577778888899999999999999999999999998
Q ss_pred CCcCCCCCCCCCCcEEEEEEEEEEEecC
Q 030085 137 HHHHNNSTSSSSSIMISSSTVTLLCNLP 164 (183)
Q Consensus 137 ~~~~~~~~~~~~g~lvA~~t~T~~~~~p 164 (183)
.+|++++.-.....+..|
T Consensus 2558 ----------~~g~~~~~~~~~~~~~~~ 2575 (2582)
T TIGR02813 2558 ----------QDGRLSSEMKSAKVTISK 2575 (2582)
T ss_pred ----------CCCcEEEEEeCCeEEECH
Confidence 789999987776664433
No 91
>PF10029 DUF2271: Predicted periplasmic protein (DUF2271); InterPro: IPR014469 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.63 E-value=1.2e+02 Score=23.97 Aligned_cols=48 Identities=15% Similarity=-0.053 Sum_probs=40.1
Q ss_pred HHhcCCceeEEEEEeEEEecCCCCCC-EEEEEEEEEEeCCcEEEEEEEE
Q 030085 72 HMASGFKRVAGVQLTINHLKSAELGD-LVRAVATPINLGKTIQVWQVRL 119 (183)
Q Consensus 72 ~~~~~~~~~vTv~l~i~flrpa~~Gd-~l~a~a~vi~~Gr~~~~~~v~i 119 (183)
++..++...++.+...+-..+...|. .|++++.+.+.|+.+.-+.+++
T Consensus 72 AT~~~G~~~~~~d~~~~~~~~l~~g~Y~l~vEaarE~g~~~l~~~~~~l 120 (139)
T PF10029_consen 72 ATRPPGKYTLSWDGTDDIGNPLPDGGYTLRVEAAREHGGRELVRIPFPL 120 (139)
T ss_pred CCCCCCccEEEEEccccccCccCCCcEEEEEEEEEEECCcEEEEEEEEe
Confidence 34345566788888999999999887 5889999999999998888888
No 92
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=26.22 E-value=1.5e+02 Score=21.68 Aligned_cols=31 Identities=13% Similarity=0.007 Sum_probs=19.1
Q ss_pred EecCCCCCCEEEEEEEEEEe--CCcEEEEEEEEEE
Q 030085 89 HLKSAELGDLVRAVATPINL--GKTIQVWQVRLWK 121 (183)
Q Consensus 89 flrpa~~Gd~l~a~a~vi~~--Gr~~~~~~v~i~~ 121 (183)
.+++...|+.|++.+|+.+. -++++|+ +++|
T Consensus 5 ~l~~~~~g~~V~v~Gwv~~~R~~g~~~Fi--~LrD 37 (108)
T cd04316 5 EITPELDGEEVTVAGWVHEIRDLGGIKFV--ILRD 37 (108)
T ss_pred hCchhhCCCEEEEEEEEEeeeccCCeEEE--EEec
Confidence 34555568889999998743 2335444 4554
No 93
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=23.75 E-value=3.3e+02 Score=20.74 Aligned_cols=38 Identities=11% Similarity=0.066 Sum_probs=25.9
Q ss_pred EEeEEEecCCC-CCCEEEEEEEEEEeCCcE---EEEEEEEEE
Q 030085 84 QLTINHLKSAE-LGDLVRAVATPINLGKTI---QVWQVRLWK 121 (183)
Q Consensus 84 ~l~i~flrpa~-~Gd~l~a~a~vi~~Gr~~---~~~~v~i~~ 121 (183)
.+.-..+++.. .++.+++++++.+.+..- .-++++++|
T Consensus 54 ~i~~~~~~~~~~~~~~l~v~g~i~N~~~~~~~~P~l~l~L~D 95 (149)
T PF11906_consen 54 KIESSDLRPVPDGPGVLVVSGTIRNRADFPQALPALELSLLD 95 (149)
T ss_pred EEeeeeEEeecCCCCEEEEEEEEEeCCCCcccCceEEEEEEC
Confidence 33335566665 344799999999887654 455888887
No 94
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=22.23 E-value=1.5e+02 Score=22.38 Aligned_cols=13 Identities=31% Similarity=0.304 Sum_probs=10.0
Q ss_pred CCCcEEEEEEEEE
Q 030085 147 SSSIMISSSTVTL 159 (183)
Q Consensus 147 ~~g~lvA~~t~T~ 159 (183)
.+|++-|.+..||
T Consensus 13 ~dgrmkA~vsvT~ 25 (95)
T COG2088 13 TDGRMKAYVSVTL 25 (95)
T ss_pred CCCcEEEEEEEEe
Confidence 5678888888775
No 95
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS. These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh
Probab=20.77 E-value=1.8e+02 Score=22.00 Aligned_cols=21 Identities=14% Similarity=0.164 Sum_probs=14.6
Q ss_pred EEEecCCCCCCEEEEEEEEEE
Q 030085 87 INHLKSAELGDLVRAVATPIN 107 (183)
Q Consensus 87 i~flrpa~~Gd~l~a~a~vi~ 107 (183)
+.-+.+...|+.|++.+||.+
T Consensus 5 ~~~~~~~~~g~~V~i~Gwv~~ 25 (135)
T cd04317 5 CGELRESHVGQEVTLCGWVQR 25 (135)
T ss_pred hhhCChhHCCCEEEEEEeEeh
Confidence 444555556888999999874
No 96
>PF08670 MEKHLA: MEKHLA domain; InterPro: IPR013978 The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins.
Probab=20.76 E-value=1.6e+02 Score=23.74 Aligned_cols=21 Identities=10% Similarity=0.359 Sum_probs=18.2
Q ss_pred EEEEEeCCcEEEEEEEEEEcc
Q 030085 103 ATPINLGKTIQVWQVRLWKVK 123 (183)
Q Consensus 103 a~vi~~Gr~~~~~~v~i~~~~ 123 (183)
-++.+.||+..+-++.+|++.
T Consensus 109 iRiss~Grrf~ie~a~vW~l~ 129 (148)
T PF08670_consen 109 IRISSTGRRFRIERATVWNLI 129 (148)
T ss_pred EEEcCCCCeEEEeceEEEEEE
Confidence 357789999999999999974
No 97
>COG3777 Uncharacterized conserved protein [Function unknown]
Probab=20.17 E-value=2.3e+02 Score=25.23 Aligned_cols=69 Identities=14% Similarity=-0.010 Sum_probs=47.8
Q ss_pred CEEEEEEEcCCCCcC-CCCcccHHHHHHHHHHHHHHHHHHhcCCceeEEEEEeEEEecCCCCCCEEEEEEEEEEeCC
Q 030085 35 ERIIGCFRVTQNSCQ-PFKVLHGGVSALIAESLASMGAHMASGFKRVAGVQLTINHLKSAELGDLVRAVATPINLGK 110 (183)
Q Consensus 35 g~v~~~m~v~~~~~N-p~G~lHGG~~a~LaD~A~g~a~~~~~~~~~~vTv~l~i~flrpa~~Gd~l~a~a~vi~~Gr 110 (183)
-+|--..+......| |.=++||-.+++|+=.++- . . ..-.-..+...-|+|+-.++++++.+..+-.|+
T Consensus 184 HrIHyD~~Yat~vEgYpgLVvhGPl~atlll~~~~----~-~--~pq~~~Rf~fR~L~p~f~~~~lti~~~l~~~g~ 253 (273)
T COG3777 184 HRIHYDAPYATYVEGYPGLVVHGPLIATLLLRAFQ----P-F--LPQPIRRFRFRNLSPAFPNETLTICGSLSGSGG 253 (273)
T ss_pred eeeeccCcceeeccCCCCceecchHHHHHHHHHhh----h-h--ccccchheeccccccccCCCCeeEeeEecCCCc
Confidence 344444454444455 4568999999999876541 1 1 112256677888999999999999999887775
Done!