BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030087
(183 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O74800|IMP1_SCHPO Mitochondrial inner membrane protease subunit 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=imp1 PE=3 SV=1
Length = 157
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 33 NKGDQMAPVMGGLGGTLLVRKLPAADPKRVSVGDVVVMKDPEKSDNYIVRRLAAIEGYEM 92
G M P + G +L+ KL + SVGDVVV P S ++ +R+ + G +
Sbjct: 31 TSGPSMMPTLNSGGEFVLLDKLHGRFARSCSVGDVVVSAKPSDSKQHVCKRIIGMPGDTI 90
Query: 93 -VSTDEKDEPFVLDKDECWVLADNENMKPKEANDSRTFGPVPMRNIVGRAI 142
V ++ + W+ DN + DSR +GPVPM I + I
Sbjct: 91 YVDPTSSNKKITIPLGHVWLAGDNI----AHSLDSRNYGPVPMGLIKAKVI 137
>sp|Q9CQU8|IMP1L_MOUSE Mitochondrial inner membrane protease subunit 1 OS=Mus musculus
GN=Immp1l PE=2 SV=1
Length = 166
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 7/104 (6%)
Query: 62 VSVGDVVVMKDPEKSDNYIVRRLAAIEGYEMVSTDEKD---EPFVLDKDECWVLADNENM 118
+ GD+V+ K P + I +R+ +EG +++ST D + W+ DN
Sbjct: 63 IQRGDIVIAKSPSDPKSNICKRVIGLEGDKILSTSPSDVFKSRSYVPTGHVWLEGDNL-- 120
Query: 119 KPKEANDSRTFGPVPMRNIVGRAIYCLRTAVDHGPVQNSNDSMR 162
+ + DSR +GP+P I GR + + D G +++S + R
Sbjct: 121 --QNSTDSRYYGPIPYGLIRGRIFFKIWPFSDFGFLRDSPNGQR 162
>sp|Q96LU5|IMP1L_HUMAN Mitochondrial inner membrane protease subunit 1 OS=Homo sapiens
GN=IMMP1L PE=2 SV=1
Length = 166
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 65 GDVVVMKDPEKSDNYIVRRLAAIEGYEMVSTDEKD---EPFVLDKDECWVLADNENMKPK 121
GD+V+ K P + I +R+ +EG ++++T D + W+ DN +
Sbjct: 66 GDIVIAKSPSDPKSNICKRVIGLEGDKILTTSPSDFFKSHSYVPMGHVWLEGDNL----Q 121
Query: 122 EANDSRTFGPVPMRNIVGRAIYCLRTAVDHGPVQNSNDSMR 162
+ DSR +GP+P I GR + + D G ++ S + R
Sbjct: 122 NSTDSRCYGPIPYGLIRGRIFFKIWPLSDFGFLRASPNGHR 162
>sp|Q28I39|IMP1L_XENTR Mitochondrial inner membrane protease subunit 1 OS=Xenopus
tropicalis GN=immp1l PE=2 SV=1
Length = 167
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 13/107 (12%)
Query: 65 GDVVVMKDPEKSDNYIVRRLAAIEGYEMVSTDE----KDEPFVLDKDECWVLADNENMKP 120
GD++V K P+K I +R+ +EG ++ + K +V K W+ DN +
Sbjct: 66 GDIIVAKSPDKPSVNICKRVIGLEGDKVCMSSPSALLKRHTYV-PKGHVWLEGDNLD--- 121
Query: 121 KEANDSRTFGPVPMRNIVGRAIYCLRT--AVDHGPVQNSNDSMRKDS 165
+ DSR++GPVP I GR CLR GP++ S + +D+
Sbjct: 122 -NSTDSRSYGPVPYALIRGRI--CLRVWPLESFGPLKESPNGRIQDN 165
>sp|P46972|IMP2_YEAST Mitochondrial inner membrane protease subunit 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IMP2 PE=1
SV=1
Length = 177
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 64/150 (42%), Gaps = 26/150 (17%)
Query: 9 RYIANKLEYSVSISWKGKLTYLYGN-------KGDQMAPVMGGLGGTL-----LVRKLPA 56
R++ N L ++ISW L + N KG M P + TL L+ K
Sbjct: 9 RFLRNTL---IAISWVPVLLTINNNVVHIAQVKGTSMQPTLNPQTETLATDWVLLWKFGV 65
Query: 57 ADPKRVSVGDVVVMKDPEKSDNYIVRRLAAIEGYEMVSTDEK---DEPFV-LDKDECWVL 112
+P +S D+++ K P +R ++G + D K +P V L + WV
Sbjct: 66 KNPSNLSRDDIILFKAPTNPRKVYCKR---VKGLPFDTIDTKFPYPKPQVNLPRGHIWVE 122
Query: 113 ADNENMKPKEANDSRTFGPVPMRNIVGRAI 142
DN + DS TFGP+ ++G+AI
Sbjct: 123 GDNY----FHSIDSNTFGPISSGLVIGKAI 148
>sp|O04348|TPP1_ARATH Thylakoidal processing peptidase 1, chloroplastic OS=Arabidopsis
thaliana GN=TPP1 PE=2 SV=2
Length = 340
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 55/105 (52%), Gaps = 16/105 (15%)
Query: 40 PVMGGLGGTLLVRKLPAADPKRVSVGD-VVVMKDPEKSDNYIVRRLAAIEGYEMVSTDEK 98
P G + ++++ A++ V V D + + D + +++++ ++ YEM
Sbjct: 225 PEYGYSSNDVFIKRIVASEGDWVEVRDGKLFVNDIVQEEDFVLEPMS----YEM------ 274
Query: 99 DEPFVLDKDECWVLADNENMKPKEANDSRTFGPVPMRNIVGRAIY 143
EP + K +VL DN N ++ DS +GP+P+ NIVGR+++
Sbjct: 275 -EPMFVPKGYVFVLGDNRN----KSFDSHNWGPLPIENIVGRSVF 314
>sp|Q9M9Z2|TPP2_ARATH Probable thylakoidal processing peptidase 2, chloroplastic
OS=Arabidopsis thaliana GN=TPP2 PE=2 SV=1
Length = 367
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 31/111 (27%)
Query: 60 KRVSVGDVVVMKDPE-------KSDNYIVRRLAAIEG--------------------YEM 92
++ V D+V+ K P + ++R+ A EG + +
Sbjct: 235 RKPEVSDIVIFKAPPILVEHGYSCADVFIKRIVASEGDWVEVCDGKLLVNDTVQAEDFVL 294
Query: 93 VSTDEKDEPFVLDKDECWVLADNENMKPKEANDSRTFGPVPMRNIVGRAIY 143
D + EP + + +VL DN N ++ DS +GP+P++NI+GR+++
Sbjct: 295 EPIDYEMEPMFVPEGYVFVLGDNRN----KSFDSHNWGPLPIKNIIGRSVF 341
>sp|Q96T52|IMP2L_HUMAN Mitochondrial inner membrane protease subunit 2 OS=Homo sapiens
GN=IMMP2L PE=2 SV=1
Length = 175
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 62 VSVGDVVVMKDPEKSDNYIVRRLAAIEGYEMVSTDEKDEPFVLDKDECWVLADNENMKPK 121
V GD+V + P+ + I++R+ A+EG + + K+ + + WV D+
Sbjct: 71 VHRGDIVSLVSPKNPEQKIIKRVIALEGDIVRTIGHKNRYVKVPRGHIWVEGDHHG---- 126
Query: 122 EANDSRTFGPVPMRNIVGRAIYCL 145
+ DS +FGPV + + A + L
Sbjct: 127 HSFDSNSFGPVSLGLLHAHATHIL 150
>sp|Q2KI92|IMP2L_BOVIN Mitochondrial inner membrane protease subunit 2 OS=Bos taurus
GN=IMMP2L PE=2 SV=1
Length = 177
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 62 VSVGDVVVMKDPEKSDNYIVRRLAAIEGYEMVSTDEKDEPFVLDKDECWVLADNENMKPK 121
V GD+V + P+ + I++R+ A+EG + + K+ + + WV D+
Sbjct: 71 VQRGDIVSLVSPKNPEQKIIKRVIALEGDIVKTMGHKNRYVKVPRGHIWVEGDHHG---- 126
Query: 122 EANDSRTFGPVPMRNIVGRAIYCL 145
+ DS +FGPV + + A + L
Sbjct: 127 HSFDSNSFGPVSLGLLHAHATHIL 150
>sp|Q8BPT6|IMP2L_MOUSE Mitochondrial inner membrane protease subunit 2 OS=Mus musculus
GN=Immp2l PE=2 SV=1
Length = 175
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 62 VSVGDVVVMKDPEKSDNYIVRRLAAIEGYEMVSTDEKDEPFVLDKDECWVLADNENMKPK 121
V GD+V + P+ + I++R+ A+EG + + K+ + + WV D+
Sbjct: 71 VQRGDIVSLVSPKNPEQKIIKRVIALEGDIVRTIGHKNRLVKVPRGHMWVEGDHHG---- 126
Query: 122 EANDSRTFGPVPMRNIVGRAIYCL 145
+ DS +FGPV + + A + L
Sbjct: 127 HSFDSNSFGPVSLGLLHAHATHIL 150
>sp|Q5PQ63|IMP2L_XENLA Mitochondrial inner membrane protease subunit 2 OS=Xenopus laevis
GN=immp2l PE=2 SV=1
Length = 170
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 62 VSVGDVVVMKDPEKSDNYIVRRLAAIEGYEMVSTDEKDEPFVLDKDECWVLADNENMKPK 121
V GD+V + P+ + I++R+ A+EG + + K+ + + WV D+
Sbjct: 68 VQRGDIVSLVSPKNPEQKIIKRVIALEGDIVKTLGHKNRYVKVPRGHVWVEGDHHG---- 123
Query: 122 EANDSRTFGPVPMRNIVGRAIYCL 145
+ DS FGPV + + A + L
Sbjct: 124 HSFDSNAFGPVSLGLLHSHATHIL 147
>sp|Q8H0W1|PLSP1_ARATH Chloroplast processing peptidase OS=Arabidopsis thaliana GN=PLSP1
PE=2 SV=2
Length = 291
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 31/111 (27%)
Query: 60 KRVSVGDVVVMKDPE-------KSDNYIVRRLAAIEG--------YEMVSTDEKDEPFVL 104
++ D+V+ K P + ++R+ A EG MV+ ++E F+L
Sbjct: 163 RKPCANDIVIFKSPPVLQEVGYTDADVFIKRIVAKEGDLVEVHNGKLMVNGVARNEKFIL 222
Query: 105 D------------KDECWVLADNENMKPKEANDSRTFGPVPMRNIVGRAIY 143
+ ++ +V+ DN N + DS +GP+P++NI+GR+++
Sbjct: 223 EPPGYEMTPIRVPENSVFVMGDNRN----NSYDSHVWGPLPLKNIIGRSVF 269
>sp|Q6AZD4|IMP2L_DANRE Mitochondrial inner membrane protease subunit 2 OS=Danio rerio
GN=immp2l PE=2 SV=1
Length = 183
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 61 RVSVGDVVVMKDPEKSDNYIVRRLAAIEGYEMVSTDEKDEPFVLDKDECWVLADNENMKP 120
V GD+V + P+ I++R+ IEG + + K+ + W+ D+
Sbjct: 69 HVQRGDIVSVLSPKNPQQKIIKRVIGIEGDFIKTLGYKNRYVRVPDGHLWIEGDHHG--- 125
Query: 121 KEANDSRTFGPVPMRNIVGRAIYCL 145
+ DS FGPV + + GRA + +
Sbjct: 126 -HSFDSNAFGPVSLGLVHGRASHII 149
>sp|Q9UST2|IMP2L_SCHPO Mitochondrial inner membrane protease subunit 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC336.13c PE=3 SV=1
Length = 180
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 65 GDVVVMKDPEKSDNYIVRRLAAIEGYEMVST--DEKDEPFVLDKDECWVLADNENMKPKE 122
GDVV+++ PE + +V+R+ +E Y+++ T +K + + WV D +
Sbjct: 75 GDVVILRSPENPEELLVKRVLGVE-YDIMKTRPPKKLSLVPVPEGHVWVEGDEQF----H 129
Query: 123 ANDSRTFGPVPMRNIVGRAIYCL 145
+ DS FGPV I + I L
Sbjct: 130 SIDSNKFGPVSTGLITAKVIAIL 152
>sp|O25300|LEP_HELPY Signal peptidase I OS=Helicobacter pylori (strain ATCC 700392 /
26695) GN=lepB PE=3 SV=1
Length = 290
Score = 33.9 bits (76), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 59 PKRVSVGDVVVMKDPEKSDNYIVRRLAAIEGYEMVSTDEKD--EPFVLDKDECWVLADNE 116
PKR G+VVV P + +Y V+R AI G E++ T+E PF D D+ ++
Sbjct: 86 PKR---GEVVVFIPPHEKKSYYVKRNFAIGGDEVLFTNEGFYLHPFESDTDKNYIAKHYP 142
Query: 117 NMKPKE 122
N KE
Sbjct: 143 NAMTKE 148
>sp|P72660|LEP1_SYNY3 Probable signal peptidase I-1 OS=Synechocystis sp. (strain PCC 6803
/ Kazusa) GN=lepB1 PE=3 SV=1
Length = 196
Score = 33.5 bits (75), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 31/113 (27%)
Query: 63 SVGDVVVMKDPE--KSDNY-----IVRRLAAIEGYE------MVSTDEK--DEPFVLDKD 107
VGD++V PE + Y ++R+ A+ G +V D + E ++L+
Sbjct: 68 QVGDIIVFHPPELLQVQGYDLGQAFIKRVIALPGQTVEVNNGIVYRDGQPLQEEYILEPP 127
Query: 108 E------------CWVLADNENMKPKEANDSRTFGPVPMRNIVGRAIYCLRTA 148
+ +V+ DN N +NDS +G +P +NI+G A++ A
Sbjct: 128 QYNLPAVRVPDGQVFVMGDNRN----NSNDSHVWGFLPQQNIIGHALFRFFPA 176
>sp|Q5RJH6|SMG7_MOUSE Protein SMG7 OS=Mus musculus GN=Smg7 PE=1 SV=1
Length = 1138
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 68 VVMKDP-EKSDNYIVRRLAAIE--------GYEMVSTDEKDEPFVLDKDECWVLADNENM 118
++++DP E +N I++ + +E G + V + ++ D E V+ EN+
Sbjct: 491 LILEDPSEAKENLILQETSVVESLATDGSPGLKSVLSTGRNPSNSCDSGEKPVVTFKENI 550
Query: 119 KPKEANDSRTFGPVPMRNIV----GRAIYCLRTAVDHGPVQNSN 158
KP+E N R+F P +++ +T V P Q SN
Sbjct: 551 KPREVNQGRSFPPKEVKSQTELRKTPVSEARKTPVTQTPSQTSN 594
>sp|Q51876|LEP_PHOLA Signal peptidase I OS=Phormidium laminosum GN=lepB PE=3 SV=1
Length = 203
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 88 EGYEMVSTDEKDEPFVLDKDECWVLADNENMKPKEANDSRTFGPVPMRNIVGRAI 142
E Y D + P + D VL DN N + DS +G VP +NI+GRA+
Sbjct: 135 ENYIQSPPDYQWGPEKVPADSFLVLGDNRN----NSYDSHFWGYVPRQNIIGRAV 185
>sp|B2FPA9|LPXC_STRMK UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
OS=Stenotrophomonas maltophilia (strain K279a) GN=lpxC
PE=3 SV=1
Length = 303
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 9/96 (9%)
Query: 40 PVMGGLGGTLLVRKLPAA-----DPKRVSVGDVVVMKDPEKSDNYIVRRLAAIEGYEMVS 94
P+M G G + A PKR + V+K E ++ V R + EGY++
Sbjct: 101 PIMDGSAGPFVFLLQSAGIVEQDAPKRF----IRVLKTVEVTEGDKVARFSPYEGYKLGF 156
Query: 95 TDEKDEPFVLDKDECWVLADNENMKPKEANDSRTFG 130
T + D P + K + + KE + +RTFG
Sbjct: 157 TIQFDHPMIPAKQSRQEIEFSTLAYTKEISRARTFG 192
>sp|Q89AM6|LEP_BUCBP Signal peptidase I OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=lepB PE=3 SV=1
Length = 310
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 97 EKDEPFVLDKDECWVLADNENMKPKEANDSRTFGPVPMRNIVGRAIYC 144
+K +++ K + +VL DN + + DSR +G VP +N++G+ ++
Sbjct: 243 QKQGTWIVPKHKYFVLGDNRD----NSLDSRYWGFVPEKNLIGKVVFI 286
>sp|P28627|IMP1_YEAST Mitochondrial inner membrane protease subunit 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IMP1 PE=1
SV=3
Length = 190
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 22/125 (17%)
Query: 34 KGDQMAPVMGGLGGTLLVRKLPAADPKRVSVGDVVVMKDPEKSDNYIVRRLAAIEGYEMV 93
+G+ M P + + V K + + + +GD +V P ++ I +R+ + G ++V
Sbjct: 37 RGESMLPTLSATNDYVHVLK-NFQNGRGIKMGDCIVALKPTDPNHRICKRVTGMPG-DLV 94
Query: 94 STD---------------EKDEPFV-LDKDECWVLADNENMKPKEANDSRTFGPVPMRNI 137
D E+ ++ + + WV DN + + DSRT+ +PM I
Sbjct: 95 LVDPSTIVNYVGDVLVDEERFGTYIKVPEGHVWVTGDNLS----HSLDSRTYNALPMGLI 150
Query: 138 VGRAI 142
+G+ +
Sbjct: 151 MGKIV 155
>sp|Q9ZLQ5|LEP_HELPJ Signal peptidase I OS=Helicobacter pylori (strain J99) GN=lepB PE=3
SV=1
Length = 290
Score = 30.4 bits (67), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 59 PKRVSVGDVVVMKDPEKSDNYIVRRLAAIEGYEMVSTDEKD--EPFVLDKDECWVLADNE 116
PKR G+VVV P + +Y V+R AI G E++ T+E PF D+ ++
Sbjct: 86 PKR---GEVVVFIPPHEKKSYYVKRNFAIGGDEVLFTNEGFYLHPFESGNDKDYISKHYP 142
Query: 117 NMKPKE 122
N KE
Sbjct: 143 NALTKE 148
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,644,659
Number of Sequences: 539616
Number of extensions: 2984456
Number of successful extensions: 6773
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 6755
Number of HSP's gapped (non-prelim): 33
length of query: 183
length of database: 191,569,459
effective HSP length: 110
effective length of query: 73
effective length of database: 132,211,699
effective search space: 9651454027
effective search space used: 9651454027
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)