Query 030087
Match_columns 183
No_of_seqs 186 out of 1173
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 13:14:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030087.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030087hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b12_A Signal peptidase I; ser 100.0 3.1E-34 1.1E-38 238.1 11.2 125 23-152 1-232 (248)
2 1kca_A Repressor protein CI; g 99.4 2.1E-12 7.4E-17 94.1 11.2 91 28-152 13-109 (109)
3 1umu_A UMUD'; induced mutagene 99.3 1.8E-11 6.1E-16 89.7 9.3 88 28-149 27-115 (116)
4 1jhf_A LEXA repressor; LEXA SO 99.1 7.8E-10 2.7E-14 87.7 10.5 88 28-148 110-199 (202)
5 2hnf_A Repressor protein CI101 99.0 1.6E-09 5.5E-14 81.1 10.4 82 29-144 45-132 (133)
6 3bdn_A Lambda repressor; repre 99.0 2.3E-09 7.8E-14 86.4 8.9 90 29-152 141-236 (236)
7 3k2z_A LEXA repressor; winged 98.8 6E-08 2E-12 76.8 11.7 86 28-147 109-195 (196)
8 2fjr_A Repressor protein CI; g 97.2 0.0013 4.5E-08 50.6 8.2 77 35-148 112-188 (189)
9 1p3h_A 10 kDa chaperonin; beta 71.7 11 0.00037 26.4 6.0 91 42-141 5-97 (99)
10 1w4s_A Polybromo, polybromo 1 70.6 7.8 0.00027 29.3 5.5 49 38-88 5-53 (174)
11 3nx6_A 10KDA chaperonin; bacte 67.7 7.6 0.00026 27.0 4.4 41 42-87 3-43 (95)
12 1pcq_O Groes protein; chaperon 65.3 7.3 0.00025 27.2 3.9 14 42-55 3-16 (97)
13 3bbo_M Ribosomal protein L14; 64.2 24 0.00081 25.6 6.6 85 28-136 19-106 (121)
14 1we3_O CPN10(groes); chaperoni 63.7 10 0.00035 26.6 4.4 92 42-141 8-99 (100)
15 3v2d_O 50S ribosomal protein L 54.5 58 0.002 23.5 9.7 84 28-135 19-105 (122)
16 3r8s_K 50S ribosomal protein L 50.2 69 0.0024 23.1 8.8 87 27-136 18-107 (122)
17 1whi_A Ribosomal protein L14; 38.4 1.1E+02 0.0037 22.0 9.0 85 28-136 19-106 (122)
18 2pp6_A Gifsy-2 prophage ATP-bi 30.0 78 0.0027 22.2 4.4 28 59-90 61-88 (102)
19 3u5e_V L17A, YL32, 60S ribosom 28.0 1.5E+02 0.0052 21.7 6.0 27 105-136 96-122 (137)
20 1jt8_A EIF-1A, probable transl 27.5 31 0.001 24.1 2.0 11 62-72 59-69 (102)
21 2dgy_A MGC11102 protein; EIF-1 26.3 50 0.0017 23.4 3.0 47 27-73 18-65 (111)
22 3i4o_A Translation initiation 22.3 36 0.0012 22.6 1.5 12 61-72 53-64 (79)
No 1
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Probab=100.00 E-value=3.1e-34 Score=238.08 Aligned_cols=125 Identities=22% Similarity=0.359 Sum_probs=107.0
Q ss_pred hhceeEEEEEEeCCCCcccccCCCcEEEEEecCCC-----------CCCCCCcCeEEEEecCCCCCccEEEEEEEEcCce
Q 030087 23 WKGKLTYLYGNKGDQMAPVMGGLGGTLLVRKLPAA-----------DPKRVSVGDVVVMKDPEKSDNYIVRRLAAIEGYE 91 (183)
Q Consensus 23 ~~~~~~~~~~V~g~SM~PtL~~~GD~Vlv~k~~~~-----------~~~~~~rGDIVvf~~p~~~~~~~vKRVia~pGD~ 91 (183)
++.|+++++.|+|+||+|||+ .||+|+++|+.|. ...++++||||+|+.|.+++..+||||+|+|||+
T Consensus 1 ir~fv~~~~~v~g~SM~Ptl~-~GD~vlv~k~~yg~r~P~~~~~l~~~~~~~rGDIvvf~~p~~~~~~~iKRViglpGD~ 79 (248)
T 1b12_A 1 VRSFIYEPFQIPSGSMMPTLL-IGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDK 79 (248)
T ss_dssp -CBCCEEEEECCSCTTTTTSC-TTEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTCTTSEEEEEEEECTTCE
T ss_pred CeEEEEEEEEecccccccccc-CCCEEEEEecccCcccccccccccccCCCCCCcEEEEEeCCCCCceEEEEEEeeCCCE
Confidence 367999999999999999999 8999999997541 0257999999999998877789999999999999
Q ss_pred EEecCC-------------------CC-----------------------------------------------------
Q 030087 92 MVSTDE-------------------KD----------------------------------------------------- 99 (183)
Q Consensus 92 V~~~~~-------------------~~----------------------------------------------------- 99 (183)
|++.++ ..
T Consensus 80 v~i~~~~~~l~ING~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~e~l~~~~ 159 (248)
T 1b12_A 80 VTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVT 159 (248)
T ss_dssp EEEETTTTEEEEETTCCSSCCCCCCCCEEECCCEEEEEEEEEECGGGSCEEEEEEECCTTCCCTTEEEEEEEEEEETTEE
T ss_pred EEEEcCceEEEECCccccccccccceeeeeeccccccccccccccccccccccccccccccccccchhhhhHHhhhcCcc
Confidence 987543 00
Q ss_pred ------------------------CcccccCCeEEEEeCCCCCCCCCCCCCCccccccCCCeEEEEEEEEecCCCCC
Q 030087 100 ------------------------EPFVLDKDECWVLADNENMKPKEANDSRTFGPVPMRNIVGRAIYCLRTAVDHG 152 (183)
Q Consensus 100 ------------------------~~~~vp~g~~~vlGDn~~~~~~~S~DSR~~G~V~~~~I~Gkv~~~~~p~~~~~ 152 (183)
.+++||+|+|||+||||. +|.|||+||+||.++|+|||.+++||+++.+
T Consensus 160 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~VP~g~yFvmGDNR~----nS~DSR~~G~Vp~~~IvGka~~i~~s~~~~~ 232 (248)
T 1b12_A 160 HRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRD----NSADSRYWGFVPEANLVGRATAIWMSFDKQE 232 (248)
T ss_dssp EEEEECTTCCCCGGGSCCCTTCCTTEEECCTTEEEEECSBTT----SCCCHHHHCCEEGGGEEEEEEEEEEEBC---
T ss_pred ceeEecCCccccccchhcccccccccEEeCCCcEEEecCCCc----ccCCCCcccccCHHHeEEEEEEEEEeCCccc
Confidence 024899999999999999 9999999999999999999999999988653
No 2
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=99.41 E-value=2.1e-12 Score=94.10 Aligned_cols=91 Identities=18% Similarity=0.267 Sum_probs=71.5
Q ss_pred EEEEEEeCCCCc------ccccCCCcEEEEEecCCCCCCCCCcCeEEEEecCCCCCccEEEEEEEEcCceEEecCCCCCc
Q 030087 28 TYLYGNKGDQMA------PVMGGLGGTLLVRKLPAADPKRVSVGDVVVMKDPEKSDNYIVRRLAAIEGYEMVSTDEKDEP 101 (183)
Q Consensus 28 ~~~~~V~g~SM~------PtL~~~GD~Vlv~k~~~~~~~~~~rGDIVvf~~p~~~~~~~vKRVia~pGD~V~~~~~~~~~ 101 (183)
.+.++|.|+||+ |+|. +||+|++++. .+++.||+|++..+. ++.++||++..
T Consensus 13 ~f~~~V~GdSM~~~~g~~p~i~-~Gd~v~Vd~~-----~~~~~Gdivv~~~~~--~~~~vKrl~~~-------------- 70 (109)
T 1kca_A 13 AFWLEVEGNSMTAPTGSKPSFP-DGMLILVDPE-----QAVEPGDFCIARLGG--DEFTFKKLIRD-------------- 70 (109)
T ss_dssp CEEEECCSSTTCCCTTCSSCCC-TTCEEEEETT-----SCCCTTCEEEEECST--TCEEEEEEEEE--------------
T ss_pred EEEEEEeCcCcCCCCCCCCeeC-CCCEEEEecC-----CcCCCCCEEEEEECC--CeEEEEEEEEe--------------
Confidence 346889999999 9999 8999999985 368999999998743 46899999874
Q ss_pred ccccCCeEEEEeCCCCCCCCCCCCCCccccccCCCeEEEEEEEEecCCCCC
Q 030087 102 FVLDKDECWVLADNENMKPKEANDSRTFGPVPMRNIVGRAIYCLRTAVDHG 152 (183)
Q Consensus 102 ~~vp~g~~~vlGDn~~~~~~~S~DSR~~G~V~~~~I~Gkv~~~~~p~~~~~ 152 (183)
.|.+++.+||+.+ ....+- ..-+|+|+|+..+||+..||
T Consensus 71 ----~~~~~L~s~N~~y------~~~~~~--~~~~IiG~Vv~~~~~~~~~~ 109 (109)
T 1kca_A 71 ----SGQVFLQPLNPQY------PMIPCN--ESCSVVGKVIASQWPEETFG 109 (109)
T ss_dssp ----TTEEEEECSSTTS------CCEECC--TTCEEEEEEEEEECCGGGGC
T ss_pred ----CCEEEEEECCCCC------CCEEcC--CCcEEEEEEEEEEeCHHHcC
Confidence 2578899999863 112111 34679999999999987664
No 3
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A
Probab=99.28 E-value=1.8e-11 Score=89.67 Aligned_cols=88 Identities=22% Similarity=0.310 Sum_probs=64.7
Q ss_pred EEEEEEeCCCCcc-cccCCCcEEEEEecCCCCCCCCCcCeEEEEecCCCCCccEEEEEEEEcCceEEecCCCCCcccccC
Q 030087 28 TYLYGNKGDQMAP-VMGGLGGTLLVRKLPAADPKRVSVGDVVVMKDPEKSDNYIVRRLAAIEGYEMVSTDEKDEPFVLDK 106 (183)
Q Consensus 28 ~~~~~V~g~SM~P-tL~~~GD~Vlv~k~~~~~~~~~~rGDIVvf~~p~~~~~~~vKRVia~pGD~V~~~~~~~~~~~vp~ 106 (183)
.+.++|.|+||+| +|+ +||.|++++. .+++.||+|++..+ ++.++||+... +
T Consensus 27 ~~~~~v~GdSM~p~~i~-~Gd~v~vd~~-----~~~~~gdivv~~~~---~~~~vKr~~~~-----------------~- 79 (116)
T 1umu_A 27 TYFVKASGDSMIDGGIS-DGDLLIVDSA-----ITASHGDIVIAAVD---GEFTVKKLQLR-----------------P- 79 (116)
T ss_dssp EEEEECCSSTTGGGTCC-TTCEEEEETT-----SCCCTTCEEEEEET---TEEEEEEEECS-----------------S-
T ss_pred EEEEEECCCCcCCCCCC-CCCEEEEEcC-----CCCCCCCEEEEEEC---CEEEEEEEEeC-----------------C-
Confidence 4578999999999 899 8999999985 35889999999873 46899999863 2
Q ss_pred CeEEEEeCCCCCCCCCCCCCCccccccCCCeEEEEEEEEecCC
Q 030087 107 DECWVLADNENMKPKEANDSRTFGPVPMRNIVGRAIYCLRTAV 149 (183)
Q Consensus 107 g~~~vlGDn~~~~~~~S~DSR~~G~V~~~~I~Gkv~~~~~p~~ 149 (183)
.+++.+||+.+ ....+..-..-+|+|+|++.++.+.
T Consensus 80 -~~~L~s~N~~y------~~~~i~~~~~~~IiG~Vv~~~r~~r 115 (116)
T 1umu_A 80 -TVQLIPMNSAY------SPITISSEDTLDVFGVVIHVVKAAT 115 (116)
T ss_dssp -SCEEECSSTTS------CCEECCTTSCEEEEEEEEEEEC---
T ss_pred -cEEEECCCCCC------CCEEcCCCCeEEEEEEEEEEEEecC
Confidence 67888999762 1121111123479999999887653
No 4
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=99.07 E-value=7.8e-10 Score=87.70 Aligned_cols=88 Identities=26% Similarity=0.342 Sum_probs=65.3
Q ss_pred EEEEEEeCCCCccc-ccCCCcEEEEEecCCCCCCCCCcCeEEEEecCCCCCccEEEEEEEEcCceEEecCCCCCcccccC
Q 030087 28 TYLYGNKGDQMAPV-MGGLGGTLLVRKLPAADPKRVSVGDVVVMKDPEKSDNYIVRRLAAIEGYEMVSTDEKDEPFVLDK 106 (183)
Q Consensus 28 ~~~~~V~g~SM~Pt-L~~~GD~Vlv~k~~~~~~~~~~rGDIVvf~~p~~~~~~~vKRVia~pGD~V~~~~~~~~~~~vp~ 106 (183)
.+.++|.|+||+|+ |. +||.|++++. ..++.||+|++.. +++..+||+. .+|
T Consensus 110 ~~~~~v~GdSM~p~~i~-~Gd~v~vd~~-----~~~~~G~i~v~~~---~~~~~vKrl~-~~~----------------- 162 (202)
T 1jhf_A 110 DFLLRVSGMSMKDIGIM-DGDLLAVHKT-----QDVRNGQVVVARI---DDEVTVKRLK-KQG----------------- 162 (202)
T ss_dssp CEEEECCSSTTGGGTCC-TTCEEEEEEC-----SCCCTTSEEEEEE---TTEEEEEEEE-EET-----------------
T ss_pred EEEEEECCCCCCCCCCC-CCCEEEEecc-----CCcCCCeEEEEEE---CCEEEEEEEE-EeC-----------------
Confidence 35789999999999 99 8999999884 3588899999987 3578999998 454
Q ss_pred CeEEEEeCCCCCCCCCCCCCCcccc-ccCCCeEEEEEEEEecC
Q 030087 107 DECWVLADNENMKPKEANDSRTFGP-VPMRNIVGRAIYCLRTA 148 (183)
Q Consensus 107 g~~~vlGDn~~~~~~~S~DSR~~G~-V~~~~I~Gkv~~~~~p~ 148 (183)
|.+++.+||+.+ ....+.. -..-.|+|+|++.++..
T Consensus 163 ~~~~l~s~N~~y------~~~~~~~~~~~~~IiG~Vv~~~r~~ 199 (202)
T 1jhf_A 163 NKVELLPENSEF------KPIVVDLRQQSFTIEGLAVGVIRNG 199 (202)
T ss_dssp TEEEEECSSTTC------CCEEEETTTSCEEEEEEEEEEEEC-
T ss_pred CEEEEEECCCCC------CCEEccCCCCceEEEEEEEEEEEcc
Confidence 478888999752 1111110 01235999999988753
No 5
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=99.04 E-value=1.6e-09 Score=81.09 Aligned_cols=82 Identities=17% Similarity=0.243 Sum_probs=63.2
Q ss_pred EEEEEeCCCCc------ccccCCCcEEEEEecCCCCCCCCCcCeEEEEecCCCCCccEEEEEEEEcCceEEecCCCCCcc
Q 030087 29 YLYGNKGDQMA------PVMGGLGGTLLVRKLPAADPKRVSVGDVVVMKDPEKSDNYIVRRLAAIEGYEMVSTDEKDEPF 102 (183)
Q Consensus 29 ~~~~V~g~SM~------PtL~~~GD~Vlv~k~~~~~~~~~~rGDIVvf~~p~~~~~~~vKRVia~pGD~V~~~~~~~~~~ 102 (183)
+.++|.|+||+ |+|. +||+|++++. .+++.||+|++.... ++..+||++..
T Consensus 45 f~~~V~GdSM~~~~g~~p~i~-~Gd~v~vd~~-----~~~~~Gdivv~~~~~--~~~~vKrl~~~--------------- 101 (133)
T 2hnf_A 45 FWLEVEGNSMTTPTGSKTSFP-DGMLILVDPE-----QAVEPGDFCIARLGG--DEFTFAKLIRD--------------- 101 (133)
T ss_dssp EEEECCSSTTCCC---CCCCC-TTCEEEEETT-----SCCCTTSEEEEEETT--TEEEEEEEEEE---------------
T ss_pred EEEEEeCCCcCCCcCCCCccC-CCCEEEEccC-----CCCCCCCEEEEEECC--CEEEEEEEEEe---------------
Confidence 56899999999 9999 8999999984 368899999998743 46899999864
Q ss_pred cccCCeEEEEeCCCCCCCCCCCCCCccccccCCCeEEEEEEE
Q 030087 103 VLDKDECWVLADNENMKPKEANDSRTFGPVPMRNIVGRAIYC 144 (183)
Q Consensus 103 ~vp~g~~~vlGDn~~~~~~~S~DSR~~G~V~~~~I~Gkv~~~ 144 (183)
.|.+++.+||+.+ ....+. ..-+|+|+|++.
T Consensus 102 ---~~~~~L~s~N~~y------~~~~~~--~~~~IiG~Vv~~ 132 (133)
T 2hnf_A 102 ---SGQVFLQPLNPQY------PMIPCN--ESCSVVGKVIAS 132 (133)
T ss_dssp ---TTEEEEECSSTTS------CCEECS--TTEEEEEEEEEE
T ss_pred ---CCeEEEEECCCCC------CCEEcC--CCCEEEEEEEEE
Confidence 2478899999863 111111 345799999864
No 6
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=98.95 E-value=2.3e-09 Score=86.40 Aligned_cols=90 Identities=18% Similarity=0.269 Sum_probs=68.6
Q ss_pred EEEEEeCCCCc------ccccCCCcEEEEEecCCCCCCCCCcCeEEEEecCCCCCccEEEEEEEEcCceEEecCCCCCcc
Q 030087 29 YLYGNKGDQMA------PVMGGLGGTLLVRKLPAADPKRVSVGDVVVMKDPEKSDNYIVRRLAAIEGYEMVSTDEKDEPF 102 (183)
Q Consensus 29 ~~~~V~g~SM~------PtL~~~GD~Vlv~k~~~~~~~~~~rGDIVvf~~p~~~~~~~vKRVia~pGD~V~~~~~~~~~~ 102 (183)
+.+.|.|+||+ |+|. +||+|+|++. ..++.||+|++... .++..+||+...
T Consensus 141 ~~l~V~GdSM~~~~g~~P~i~-~Gd~v~vd~~-----~~~~~g~ivv~~~~--~~~~~vKrl~~~--------------- 197 (236)
T 3bdn_A 141 FWLEVEGNSMTAPTGSKPSFP-DGMLILVDPE-----QAVEPGDFCIARLG--GDEFTFKKLIRG--------------- 197 (236)
T ss_dssp EEEECCSSSSCCCSSCSSCCC-SSCEEEECCS-----SCCCTTSEEEEEST--TTCCCCEEEECC---------------
T ss_pred EEEEEeCCCcCCCCCCCCcCC-CCCEEEECCC-----CCCCCCcEEEEEEC--CCeEEEEEEEEc---------------
Confidence 56899999999 9999 8999999874 36888999999872 346799999853
Q ss_pred cccCCeEEEEeCCCCCCCCCCCCCCccccccCCCeEEEEEEEEecCCCCC
Q 030087 103 VLDKDECWVLADNENMKPKEANDSRTFGPVPMRNIVGRAIYCLRTAVDHG 152 (183)
Q Consensus 103 ~vp~g~~~vlGDn~~~~~~~S~DSR~~G~V~~~~I~Gkv~~~~~p~~~~~ 152 (183)
.|.+++.+||+.+. ...+- ..-.|+|+|+..+||...|+
T Consensus 198 ---~~~~~L~s~N~~y~------~~~~~--~~~~IiG~Vv~~~~~~~~~~ 236 (236)
T 3bdn_A 198 ---SGQVFLQPLNPQYP------MIPCN--ESCSVVGKVIASQWPEETFG 236 (236)
T ss_dssp ---SSSCEEECSSTTSC------CBC----CCCEEEEEEEECCCCSSSCC
T ss_pred ---CCcEEEEeCCCCCC------CeecC--CCcEEEEEEEEEEcCHHhcC
Confidence 34677889997631 11111 34579999999999877664
No 7
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=98.79 E-value=6e-08 Score=76.79 Aligned_cols=86 Identities=22% Similarity=0.302 Sum_probs=65.5
Q ss_pred EEEEEEeCCCC-cccccCCCcEEEEEecCCCCCCCCCcCeEEEEecCCCCCccEEEEEEEEcCceEEecCCCCCcccccC
Q 030087 28 TYLYGNKGDQM-APVMGGLGGTLLVRKLPAADPKRVSVGDVVVMKDPEKSDNYIVRRLAAIEGYEMVSTDEKDEPFVLDK 106 (183)
Q Consensus 28 ~~~~~V~g~SM-~PtL~~~GD~Vlv~k~~~~~~~~~~rGDIVvf~~p~~~~~~~vKRVia~pGD~V~~~~~~~~~~~vp~ 106 (183)
.+.++|.|+|| +|+|. +||+|++++. ..++.||+|++... ++..+||+... .
T Consensus 109 ~f~l~v~GdSM~~p~i~-~GD~viv~~~-----~~~~~G~ivv~~~~---~~~~vKr~~~~------------------~ 161 (196)
T 3k2z_A 109 HFLLKVKGESMIEEHIC-DGDLVLVRRQ-----DWAQNGDIVAAMVD---GEVTLAKFYQR------------------G 161 (196)
T ss_dssp EEEEECCSSTTGGGTCC-TTCEEEEEEC-----SCCCTTCEEEEEET---TEEEEEEEEEE------------------T
T ss_pred EEEEEEeCCCcCCCCCC-CCCEEEEecc-----CcCCCCCEEEEEEC---CcEEEEEEEEE------------------C
Confidence 56789999999 69999 8999999985 36788999999873 47899999753 3
Q ss_pred CeEEEEeCCCCCCCCCCCCCCccccccCCCeEEEEEEEEec
Q 030087 107 DECWVLADNENMKPKEANDSRTFGPVPMRNIVGRAIYCLRT 147 (183)
Q Consensus 107 g~~~vlGDn~~~~~~~S~DSR~~G~V~~~~I~Gkv~~~~~p 147 (183)
|.+++..+|+.+ ....+- -..-.|+|+|+..++.
T Consensus 162 ~~~~L~~~N~~y------~~i~i~-~~~~~i~G~Vv~~~r~ 195 (196)
T 3k2z_A 162 DTVELRPANREM------SSMFFR-AEKVKILGKVVGVFRK 195 (196)
T ss_dssp TEEEEECSCTTS------CCEEEE-GGGCEEEEEEEEEEEE
T ss_pred CEEEEEECCCCC------CCEEec-CCCEEEEEEEEEEEEc
Confidence 578889999862 111111 1234799999998764
No 8
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=97.21 E-value=0.0013 Score=50.57 Aligned_cols=77 Identities=12% Similarity=0.088 Sum_probs=53.5
Q ss_pred CCCCcccccCCCcEEEEEecCCCCCCCCCcCeEEEEecCCCCCccEEEEEEEEcCceEEecCCCCCcccccCCeEEEEeC
Q 030087 35 GDQMAPVMGGLGGTLLVRKLPAADPKRVSVGDVVVMKDPEKSDNYIVRRLAAIEGYEMVSTDEKDEPFVLDKDECWVLAD 114 (183)
Q Consensus 35 g~SM~PtL~~~GD~Vlv~k~~~~~~~~~~rGDIVvf~~p~~~~~~~vKRVia~pGD~V~~~~~~~~~~~vp~g~~~vlGD 114 (183)
+++|...-. +||+|+|++- .+..|+++++.. .++..+||+.-.+| |.+.+.+|
T Consensus 112 ~~~~~~v~~-~Gd~v~Vd~~------~~~~g~i~vv~~---~g~~~vKrl~~~~~-----------------~~i~L~s~ 164 (189)
T 2fjr_A 112 LTDGMAIRS-EGKIYFVDKQ------ASLSDGLWLVDI---KGAISIRELTKLPG-----------------RKLHVAGG 164 (189)
T ss_dssp CSSEEEEEE-TTEEEEEETT------CCSCSEEEEEEE---TTEEEEEEEEEETT-----------------TEEEEESS
T ss_pred CCCeEEEee-CCcEEEEEcC------CccCCCEEEEEe---CCeEEEEEEEECCC-----------------CEEEEEeC
Confidence 345665556 8999999972 366799999987 35789999987654 36777788
Q ss_pred CCCCCCCCCCCCCccccccCCCeEEEEEEEEecC
Q 030087 115 NENMKPKEANDSRTFGPVPMRNIVGRAIYCLRTA 148 (183)
Q Consensus 115 n~~~~~~~S~DSR~~G~V~~~~I~Gkv~~~~~p~ 148 (183)
|+. ...+ ...=.|+|+|++.+...
T Consensus 165 N~~----~~i~------~~~i~IiG~Vv~~~r~~ 188 (189)
T 2fjr_A 165 KVP----FECG------IDDIKTLGRVVGVYSEV 188 (189)
T ss_dssp SSC----EEEE------TTSSEEEEEEEEEEEEC
T ss_pred CCC----eEec------ccceEEEEEEEEEEEec
Confidence 753 1111 12336999999987654
No 9
>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A
Probab=71.71 E-value=11 Score=26.36 Aligned_cols=91 Identities=12% Similarity=0.193 Sum_probs=45.1
Q ss_pred ccCCCcEEEEEecCCCCCCCCCcCeEEEEecCCCCCccEEEEEEEEc-CceEEecCC-CCCcccccCCeEEEEeCCCCCC
Q 030087 42 MGGLGGTLLVRKLPAADPKRVSVGDVVVMKDPEKSDNYIVRRLAAIE-GYEMVSTDE-KDEPFVLDKDECWVLADNENMK 119 (183)
Q Consensus 42 L~~~GD~Vlv~k~~~~~~~~~~rGDIVvf~~p~~~~~~~vKRVia~p-GD~V~~~~~-~~~~~~vp~g~~~vlGDn~~~~ 119 (183)
|.|-+|+|++.+... .+-..|-|++=. ....++....|+|+. |- ...++ ...+..+..|.--+.+......
T Consensus 5 i~PL~DRVlVk~~e~---e~kT~gGI~LP~--sakeKp~~G~VvAVG~G~--~~~~G~~~~p~~VkvGD~Vlf~ky~Gte 77 (99)
T 1p3h_A 5 IKPLEDKILVQANEA---ETTTASGLVIPD--TAKEKPQEGTVVAVGPGR--WDEDGEKRIPLDVAEGDTVIYSKYGGTE 77 (99)
T ss_dssp EEECTTEEEEEECCC---CCBCTTSCBCCC--SSCCSEEEEEEEEECCCE--ECSSSSCEECCSCCTTCEEEEECTTCEE
T ss_pred eEEeCCEEEEEEccc---cccccceEEeCc--ccccCCceEEEEEECCCc--CcCCCCEEEccccCCCCEEEECCcCCeE
Confidence 556899999998732 233344454421 123456666777763 31 11222 2233445555544444432210
Q ss_pred CCCCCCCCccccccCCCeEEEE
Q 030087 120 PKEANDSRTFGPVPMRNIVGRA 141 (183)
Q Consensus 120 ~~~S~DSR~~G~V~~~~I~Gkv 141 (183)
.-+|.-.|=.+..++|+|.+
T Consensus 78 --vk~dgeey~i~re~DIlavi 97 (99)
T 1p3h_A 78 --IKYNGEEYLILSARDVLAVV 97 (99)
T ss_dssp --EEETTEEEEEEEGGGEEEEE
T ss_pred --EEECCEEEEEEEhHhEEEEe
Confidence 12344445456666777654
No 10
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=70.63 E-value=7.8 Score=29.34 Aligned_cols=49 Identities=10% Similarity=-0.024 Sum_probs=22.7
Q ss_pred CcccccCCCcEEEEEecCCCCCCCCCcCeEEEEecCCCCCccEEEEEEEEc
Q 030087 38 MAPVMGGLGGTLLVRKLPAADPKRVSVGDVVVMKDPEKSDNYIVRRLAAIE 88 (183)
Q Consensus 38 M~PtL~~~GD~Vlv~k~~~~~~~~~~rGDIVvf~~p~~~~~~~vKRVia~p 88 (183)
.+|-.. .+++.....+.+ ....++.||.|.+..++.+...+|.||..+-
T Consensus 5 g~~~~~-~~~r~~y~~~~~-~g~~~~vGD~V~v~~~~~~~~p~I~rI~~i~ 53 (174)
T 1w4s_A 5 GSAGLS-SLHRTYSQDCSF-KNSMYHVGDYVYVEPAEANLQPHIVCIERLW 53 (174)
T ss_dssp -----------------------CCCTTCEEEECCSSTTSCCEEEEEEEEE
T ss_pred CCcccc-CCCcEEeEEEEE-CCEEEECCCEEEEeCCCCCCCCEEEEEEEEE
Confidence 346665 566666555543 3467899999999887655667888888763
No 11
>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0
Probab=67.72 E-value=7.6 Score=26.99 Aligned_cols=41 Identities=22% Similarity=0.361 Sum_probs=16.2
Q ss_pred ccCCCcEEEEEecCCCCCCCCCcCeEEEEecCCCCCccEEEEEEEE
Q 030087 42 MGGLGGTLLVRKLPAADPKRVSVGDVVVMKDPEKSDNYIVRRLAAI 87 (183)
Q Consensus 42 L~~~GD~Vlv~k~~~~~~~~~~rGDIVvf~~p~~~~~~~vKRVia~ 87 (183)
|+|-+|+|++.+... .+-..|-|++=.. ...++.-..|+|+
T Consensus 3 i~PL~DRVlVk~~e~---e~kT~gGI~LP~~--a~eK~~~G~VvAV 43 (95)
T 3nx6_A 3 IKPLHDRVVVKPIEA---DEVSAGGIVIPDS--AKEKSTKGEVVAI 43 (95)
T ss_dssp CCCCTTEEEEEEC------------------------CEEEEEEEE
T ss_pred eEEcCCEEEEEEccc---cccccceEEeCcc--ccCCccccEEEEE
Confidence 456899999998632 2333455554221 1234555666666
No 12
>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O
Probab=65.33 E-value=7.3 Score=27.18 Aligned_cols=14 Identities=14% Similarity=0.316 Sum_probs=10.9
Q ss_pred ccCCCcEEEEEecC
Q 030087 42 MGGLGGTLLVRKLP 55 (183)
Q Consensus 42 L~~~GD~Vlv~k~~ 55 (183)
|+|-+|+|++.+..
T Consensus 3 i~PL~DRVlVk~~e 16 (97)
T 1pcq_O 3 IRPLHDRVIVKRKE 16 (97)
T ss_dssp EEECSSEEEEEECC
T ss_pred ceEcCCEEEEEEcc
Confidence 44578999999864
No 13
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=64.23 E-value=24 Score=25.56 Aligned_cols=85 Identities=14% Similarity=0.210 Sum_probs=44.2
Q ss_pred EEEEEEeCCCCcccccCCCcEEEEEecCCCCCCCCCcCeEE---EEecCCCCCccEEEEEEEEcCceEEecCCCCCcccc
Q 030087 28 TYLYGNKGDQMAPVMGGLGGTLLVRKLPAADPKRVSVGDVV---VMKDPEKSDNYIVRRLAAIEGYEMVSTDEKDEPFVL 104 (183)
Q Consensus 28 ~~~~~V~g~SM~PtL~~~GD~Vlv~k~~~~~~~~~~rGDIV---vf~~p~~~~~~~vKRVia~pGD~V~~~~~~~~~~~v 104 (183)
...+.|.|.|-.-.-. -||.|++.=-.-.....+++||++ +++.- . -++| ..|-.+.+
T Consensus 19 v~cI~Vlgg~~~r~a~-iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtk-k----~~rR---~dG~~i~F---------- 79 (121)
T 3bbo_M 19 LMCIRIIGASNRRYAR-IGDVIVAVIKEAIPNTPLERSEVIRAVVVRTC-K----ELKR---DNGMIIRY---------- 79 (121)
T ss_dssp EEEEEECSSSCCCCCC-TTCEEEEEEEEECSSSSSCSSCEEEEEEEECS-S----CEEC---TTSCEECC----------
T ss_pred EEEEEEcCCCCccccc-cCcEEEEEEEEccCCCccccCcEEEEEEEEec-C----cccc---CCCCEEEe----------
Confidence 3456666655554444 577766532110011345666653 22210 0 1121 12333333
Q ss_pred cCCeEEEEeCCCCCCCCCCCCCCccccccCCC
Q 030087 105 DKDECWVLADNENMKPKEANDSRTFGPVPMRN 136 (183)
Q Consensus 105 p~g~~~vlGDn~~~~~~~S~DSR~~G~V~~~~ 136 (183)
.++.+-++.++. +..=+|-||||++|.
T Consensus 80 ddNa~Vlin~~g-----~p~GTrI~GPVarEl 106 (121)
T 3bbo_M 80 DDNAAVIIDQEG-----NPKGTRIFGAIAREL 106 (121)
T ss_dssp SSCEEEECCTTS-----SCSSSCCCSCCCGGG
T ss_pred CCceEEEECCCC-----CEeEeEEEcCcCHHH
Confidence 345666666664 478999999999864
No 14
>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A
Probab=63.72 E-value=10 Score=26.58 Aligned_cols=92 Identities=13% Similarity=0.230 Sum_probs=44.8
Q ss_pred ccCCCcEEEEEecCCCCCCCCCcCeEEEEecCCCCCccEEEEEEEEcCceEEecCCCCCcccccCCeEEEEeCCCCCCCC
Q 030087 42 MGGLGGTLLVRKLPAADPKRVSVGDVVVMKDPEKSDNYIVRRLAAIEGYEMVSTDEKDEPFVLDKDECWVLADNENMKPK 121 (183)
Q Consensus 42 L~~~GD~Vlv~k~~~~~~~~~~rGDIVvf~~p~~~~~~~vKRVia~pGD~V~~~~~~~~~~~vp~g~~~vlGDn~~~~~~ 121 (183)
|+|-+|+|++.+... .+-..|-|++=. ....++.-..|+|+.-.. ...++...+..+..|.--+.+......
T Consensus 8 i~PL~DRVlVk~~e~---e~kT~gGI~LP~--sakeKp~~G~VvAVG~G~-~~~~G~~~p~~VkvGD~Vlf~ky~Gte-- 79 (100)
T 1we3_O 8 IKPLGDRVVVKRIEE---EPKTKGGIVLPD--TAKEKPQKGKVIAVGTGR-VLENGQRVPLEVKEGDIVVFAKYGGTE-- 79 (100)
T ss_dssp EEECTTCEEEEECCC---CSSCTTCCCCCT--TTSCCCSEEEESCCCCCE-ECTTSCEECCSCCTTCEEEECTTCSEE--
T ss_pred eEEeCCEEEEEEccc---cccccceEEeCc--ccccCCcCCEEEEECCCc-CCCCCCEEeeecCCCCEEEECCCCCeE--
Confidence 667899999998632 233344444421 122345566666663111 122233333444555544444332210
Q ss_pred CCCCCCccccccCCCeEEEE
Q 030087 122 EANDSRTFGPVPMRNIVGRA 141 (183)
Q Consensus 122 ~S~DSR~~G~V~~~~I~Gkv 141 (183)
.-+|.-.|=.+..++|+|.+
T Consensus 80 vk~dgeeyli~re~DIlavi 99 (100)
T 1we3_O 80 IEIDGEEYVILSERDLLAVL 99 (100)
T ss_dssp EECSSCEEEEECTTTEEEEE
T ss_pred EEECCEEEEEEEhHHEEEEe
Confidence 22444445556666777653
No 15
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=54.53 E-value=58 Score=23.50 Aligned_cols=84 Identities=21% Similarity=0.300 Sum_probs=46.0
Q ss_pred EEEEEEeCCCCcccccCCCcEEEEEecCCCCCCCCCcCeEE---EEecCCCCCccEEEEEEEEcCceEEecCCCCCcccc
Q 030087 28 TYLYGNKGDQMAPVMGGLGGTLLVRKLPAADPKRVSVGDVV---VMKDPEKSDNYIVRRLAAIEGYEMVSTDEKDEPFVL 104 (183)
Q Consensus 28 ~~~~~V~g~SM~PtL~~~GD~Vlv~k~~~~~~~~~~rGDIV---vf~~p~~~~~~~vKRVia~pGD~V~~~~~~~~~~~v 104 (183)
...+.|.|.|=...-. -||.|++.=-.-.....+++||++ +++.- . -++| ..|-.+.++
T Consensus 19 v~cI~Vlg~~~rr~a~-iGD~IvvsVK~~~p~~~vKkg~v~~AVIVRtk-k----~~rR---~dG~~i~Fd--------- 80 (122)
T 3v2d_O 19 IMCIRVLKGSNAKYAT-VGDVIVASVKEAIPRGAVKEGDVVKAVVVRTK-K----EIKR---PDGSAIRFD--------- 80 (122)
T ss_dssp EEEEEEESTTTCCCBC-TTCEEEEEEEEECSSSSSCTTCEEEEEEEECS-S----CEEC---TTSCEEEES---------
T ss_pred EEEEEEeCCCCCcccC-CCCEEEEEEEEcCCCCccccCCEEEEEEEEeC-C----ccCC---CCCcEEEcC---------
Confidence 4456677766655555 678776542111012346667654 22210 0 1111 234444443
Q ss_pred cCCeEEEEeCCCCCCCCCCCCCCccccccCC
Q 030087 105 DKDECWVLADNENMKPKEANDSRTFGPVPMR 135 (183)
Q Consensus 105 p~g~~~vlGDn~~~~~~~S~DSR~~G~V~~~ 135 (183)
++.+-++.++. +..-+|-||||++|
T Consensus 81 -dNa~Vlin~~~-----~p~GTrI~GpVarE 105 (122)
T 3v2d_O 81 -DNAAVIINNQL-----EPRGTRVFGPVARE 105 (122)
T ss_dssp -SCEEEEECTTS-----CBSSSCBCSCBCTH
T ss_pred -CcEEEEECCCC-----CEeeeEEEccchHH
Confidence 45666666665 47999999999986
No 16
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=50.20 E-value=69 Score=23.10 Aligned_cols=87 Identities=25% Similarity=0.357 Sum_probs=48.2
Q ss_pred eEEEEEEeCCCCcccccCCCcEEEEEecCCCCCCCCCcCeEE---EEecCCCCCccEEEEEEEEcCceEEecCCCCCccc
Q 030087 27 LTYLYGNKGDQMAPVMGGLGGTLLVRKLPAADPKRVSVGDVV---VMKDPEKSDNYIVRRLAAIEGYEMVSTDEKDEPFV 103 (183)
Q Consensus 27 ~~~~~~V~g~SM~PtL~~~GD~Vlv~k~~~~~~~~~~rGDIV---vf~~p~~~~~~~vKRVia~pGD~V~~~~~~~~~~~ 103 (183)
....+.|.|.|=...-. -||.|++.=-.-.....+++||++ +++.- . -++| ..|-.+.++
T Consensus 18 ~v~cI~Vlgg~~r~~a~-iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtk-k----~~rR---~dG~~i~Fd-------- 80 (122)
T 3r8s_K 18 RVMCIKVLGGSHRRYAG-VGDIIKITIKEAIPRGKVKKGDVLKAVVVRTK-K----GVRR---PDGSVIRFD-------- 80 (122)
T ss_dssp EEEEEEECSSSSCCCBC-TTCEEEEEEEEECTTSSSCTTCEEEEEEEECS-S----CEEC---TTSCEEEES--------
T ss_pred eEEEEEEeCCCCCCccc-CCCEEEEEEEEcCCCCccccCCEEEEEEEEeC-C----cCCC---CCCcEEEcC--------
Confidence 34556677766666556 678776542111012345667654 22220 0 1222 234444443
Q ss_pred ccCCeEEEEeCCCCCCCCCCCCCCccccccCCC
Q 030087 104 LDKDECWVLADNENMKPKEANDSRTFGPVPMRN 136 (183)
Q Consensus 104 vp~g~~~vlGDn~~~~~~~S~DSR~~G~V~~~~ 136 (183)
++.+-++.++.. +..=+|-||||++|.
T Consensus 81 --dNa~Vlin~~~g----~p~GTrI~GpVarEl 107 (122)
T 3r8s_K 81 --GNACVLLNNNSE----QPIGTRIFGPVTREL 107 (122)
T ss_dssp --SCEEEEEETTTE----EESCSCBCSCCCGGG
T ss_pred --CceEEEEeCCCC----CEeeeEEEccccHHH
Confidence 467777777733 578899999999864
No 17
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M
Probab=38.41 E-value=1.1e+02 Score=22.01 Aligned_cols=85 Identities=22% Similarity=0.349 Sum_probs=44.6
Q ss_pred EEEEEEeCCCCcccccCCCcEEEEEecCCCCCCCCCcCeEEE---EecCCCCCccEEEEEEEEcCceEEecCCCCCcccc
Q 030087 28 TYLYGNKGDQMAPVMGGLGGTLLVRKLPAADPKRVSVGDVVV---MKDPEKSDNYIVRRLAAIEGYEMVSTDEKDEPFVL 104 (183)
Q Consensus 28 ~~~~~V~g~SM~PtL~~~GD~Vlv~k~~~~~~~~~~rGDIVv---f~~p~~~~~~~vKRVia~pGD~V~~~~~~~~~~~v 104 (183)
...+.|.|.|-.-.-. -||.|++.=-.......+++||++- ++.- . -++| ..|-.+.+
T Consensus 19 v~cI~vlgg~~~r~a~-iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtk-k----~~rR---~dG~~i~F---------- 79 (122)
T 1whi_A 19 VLVIKVLGGSGRRYAN-IGDVVVATVKDATPGGVVKKGQVVKAVVVRTK-R----GVRR---PDGSYIRF---------- 79 (122)
T ss_dssp EEEEEECSSTTCCCBC-TTCEEEEEEEEECTTSSSCTTCEEEEEEEECS-S----CEEC---TTSCEECC----------
T ss_pred EEEEEEcCCCcccccc-cCeEEEEEEEEecCCCccccccEEEEEEEEec-C----ceec---CCCCEEEe----------
Confidence 3456666665555555 5777665321100113455666542 2210 0 0122 22333333
Q ss_pred cCCeEEEEeCCCCCCCCCCCCCCccccccCCC
Q 030087 105 DKDECWVLADNENMKPKEANDSRTFGPVPMRN 136 (183)
Q Consensus 105 p~g~~~vlGDn~~~~~~~S~DSR~~G~V~~~~ 136 (183)
.++.+-++.++. +..=+|-||||++|.
T Consensus 80 ddNa~Vlin~~g-----~p~GTrI~GPVarEl 106 (122)
T 1whi_A 80 DENACVIIRDDK-----SPRGTRIFGPVAREL 106 (122)
T ss_dssp SSCEEEEECTTS-----CBSSSCBCSCBCTHH
T ss_pred CCceEEEECCCC-----CEeeeEEEccchHHH
Confidence 356677777665 478999999999763
No 18
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=29.98 E-value=78 Score=22.16 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=22.3
Q ss_pred CCCCCcCeEEEEecCCCCCccEEEEEEEEcCc
Q 030087 59 PKRVSVGDVVVMKDPEKSDNYIVRRLAAIEGY 90 (183)
Q Consensus 59 ~~~~~rGDIVvf~~p~~~~~~~vKRVia~pGD 90 (183)
...|++||.|++. ...++++|-.-..|-
T Consensus 61 gYrP~r~D~Vv~~----Gk~y~Vtr~~~~ngk 88 (102)
T 2pp6_A 61 NVIPRRGDRVVLR----GSEFTVTRIRRFNGK 88 (102)
T ss_dssp SCCCCTTCEEEET----TEEEEEEEEEEETTE
T ss_pred CcccCCCCEEEEc----CcEEEEEEEEEECCc
Confidence 4689999999997 356899998877664
No 19
>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J
Probab=28.02 E-value=1.5e+02 Score=21.72 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=19.7
Q ss_pred cCCeEEEEeCCCCCCCCCCCCCCccccccCCC
Q 030087 105 DKDECWVLADNENMKPKEANDSRTFGPVPMRN 136 (183)
Q Consensus 105 p~g~~~vlGDn~~~~~~~S~DSR~~G~V~~~~ 136 (183)
.++.+-++.++. +..=+|-||||++|.
T Consensus 96 ddNA~Vlin~~g-----~p~GTrI~GPVarEl 122 (137)
T 3u5e_V 96 EDNAGVIANPKG-----EMKGSAITGPVGKEC 122 (137)
T ss_dssp SSCEEEEBCTTC-----CBSSSCBCSCBCHHH
T ss_pred CCceEEEECCCC-----CEeeeEEEcchhHHH
Confidence 345666666654 578999999998764
No 20
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=27.50 E-value=31 Score=24.12 Aligned_cols=11 Identities=55% Similarity=0.806 Sum_probs=6.9
Q ss_pred CCcCeEEEEec
Q 030087 62 VSVGDVVVMKD 72 (183)
Q Consensus 62 ~~rGDIVvf~~ 72 (183)
+.+||+|++..
T Consensus 59 I~~GD~VlVe~ 69 (102)
T 1jt8_A 59 VREGDVVIVKP 69 (102)
T ss_dssp CCSCEEEEECC
T ss_pred ecCCCEEEEEe
Confidence 55666666654
No 21
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.35 E-value=50 Score=23.36 Aligned_cols=47 Identities=15% Similarity=0.246 Sum_probs=26.3
Q ss_pred eEEEEEEeCCCCcccccCCCcEEEEEecCC-CCCCCCCcCeEEEEecC
Q 030087 27 LTYLYGNKGDQMAPVMGGLGGTLLVRKLPA-ADPKRVSVGDVVVMKDP 73 (183)
Q Consensus 27 ~~~~~~V~g~SM~PtL~~~GD~Vlv~k~~~-~~~~~~~rGDIVvf~~p 73 (183)
...+....|+.|.=...++|..+++.-... .+.--+.+||+|++..-
T Consensus 18 ~g~V~~~lgn~~f~V~l~nG~~~la~i~GK~Rk~IwI~~GD~VlVe~~ 65 (111)
T 2dgy_A 18 IVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDPI 65 (111)
T ss_dssp EEEEEECCSSSEEEEECTTSCEEEEECCTTCCSCCCCCSSCEEEEEEC
T ss_pred EEEEEEeCCCCEEEEEeCCCCEEEEEechhhcccEEEcCCCEEEEEec
Confidence 445555666666654433677777643211 01123778888888753
No 22
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=22.31 E-value=36 Score=22.64 Aligned_cols=12 Identities=33% Similarity=0.318 Sum_probs=8.2
Q ss_pred CCCcCeEEEEec
Q 030087 61 RVSVGDVVVMKD 72 (183)
Q Consensus 61 ~~~rGDIVvf~~ 72 (183)
.+..||.|.+..
T Consensus 53 ~Il~GD~V~ve~ 64 (79)
T 3i4o_A 53 RILPEDRVVVEL 64 (79)
T ss_dssp CCCTTCEEEEEE
T ss_pred cCCCCCEEEEEE
Confidence 466777777764
Done!