Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>030088
MSVASSVPCLRVPTSSSCCSSSSSSNPSNFRISRTKLSPFTVTCSQGDGPIRRPVAPPLR
EPSPPSTVKPVPPSPPQPSPPSPLSSSVAQPPKPAAVVEDKNVVTLEFQRQKAKELQEYF
KQKKLEEANVGPFFGFIGKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILLSNFGIL
DLE

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030088
        (183 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2008996 - symbol:OHP2 "AT1G34000" species:3702...   381  7.6e-46   2


>TAIR|locus:2008996 [details] [associations]
            symbol:OHP2 "AT1G34000" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009535 "chloroplast thylakoid
            membrane" evidence=IDA] [GO:0009642 "response to light intensity"
            evidence=IEP] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
            [GO:0009637 "response to blue light" evidence=RCA] [GO:0009644
            "response to high light intensity" evidence=RCA] [GO:0009744
            "response to sucrose stimulus" evidence=RCA] [GO:0010114 "response
            to red light" evidence=RCA] [GO:0010155 "regulation of proton
            transport" evidence=RCA] [GO:0010218 "response to far red light"
            evidence=RCA] EMBL:CP002684 GO:GO:0009535 Gene3D:1.10.3460.10
            InterPro:IPR023329 GO:GO:0009642 EMBL:AC015446 EMBL:AC079286
            UniGene:At.48119 UniGene:At.66856 EMBL:AF378874 EMBL:AY045977
            EMBL:AY050472 EMBL:AY057393 EMBL:AY091438 IPI:IPI00536667
            PIR:G86463 RefSeq:NP_564432.3 ProteinModelPortal:Q9FEC1 SMR:Q9FEC1
            IntAct:Q9FEC1 STRING:Q9FEC1 PRIDE:Q9FEC1 EnsemblPlants:AT1G34000.1
            GeneID:840297 KEGG:ath:AT1G34000 TAIR:At1g34000
            HOGENOM:HOG000029686 InParanoid:Q9FEC1 OMA:LQDYFKQ PhylomeDB:Q9FEC1
            ProtClustDB:CLSN2680738 ArrayExpress:Q9FEC1 Genevestigator:Q9FEC1
            Uniprot:Q9FEC1
        Length = 172

 Score = 381 (139.2 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
 Identities = 75/89 (84%), Positives = 79/89 (88%)

Query:    95 AAVVEDKNVVTLEFQRQKAKELQEYFKQKKLEEANVGPFFGFIGKNEIANGRWAMFGFAV 154
             A  V+ K+V T+EFQRQKAKELQEYFKQKKLE A  GPFFGF  KNEI+NGRWAMFGFAV
Sbjct:    84 AVAVDGKSVTTVEFQRQKAKELQEYFKQKKLEAAGQGPFFGFQPKNEISNGRWAMFGFAV 143

Query:   155 GMLTEYATGSDFVDQVKILLSNFGILDLE 183
             GMLTEYATGSD VDQVKILLSNFGILDLE
Sbjct:   144 GMLTEYATGSDLVDQVKILLSNFGILDLE 172

 Score = 117 (46.2 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
 Identities = 28/63 (44%), Positives = 35/63 (55%)

Query:     1 MSVASSVPCLRVPTXXXXXXXXXXXNPSNFRISRT-KLSPFTVTCSQGDGPIRRPVAPP- 58
             MSVAS + C+R+               S+FR S T K   F + CSQ +GP+RRP APP 
Sbjct:     1 MSVASPIQCIRILNPSSSSSSSTAS--SSFRFSTTTKPCVFIIRCSQTEGPLRRPSAPPT 58

Query:    59 LRE 61
             LRE
Sbjct:    59 LRE 61


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      183       141   0.00091  102 3  11 22  0.44    31
                                                     30  0.47    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  559 (59 KB)
  Total size of DFA:  122 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  13.12u 0.07s 13.19t   Elapsed:  00:00:01
  Total cpu time:  13.12u 0.07s 13.19t   Elapsed:  00:00:02
  Start:  Fri May 10 07:27:34 2013   End:  Fri May 10 07:27:36 2013

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