BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030088
         (183 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q02060|PSBS_SPIOL Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea
           GN=PSBS PE=1 SV=1
          Length = 274

 Score = 38.1 bits (87), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 131 GPFFGFIGKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKI 172
           GP FGF   NE+  GR A  GFA  ++ E  TG   + Q+ I
Sbjct: 193 GPLFGFTKSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNI 234



 Score = 34.7 bits (78), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 105 TLEFQRQKAKELQEYFKQK-KLEEANVGP--FFGFIGKNEIANGRWAMFGFAVGMLTEYA 161
           TL   + KAK  ++  K K K+E+   G     GF  +NE+  GR AM GFA  +L E  
Sbjct: 60  TLALFKSKAKAPKKVEKPKLKVEDGLFGTSGGIGFTKENELFVGRVAMIGFAASLLGEGI 119

Query: 162 TGSDFVDQVKI 172
           TG   + Q+ +
Sbjct: 120 TGKGILSQLNL 130


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.131    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,842,581
Number of Sequences: 539616
Number of extensions: 3278222
Number of successful extensions: 71215
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 1455
Number of HSP's that attempted gapping in prelim test: 33974
Number of HSP's gapped (non-prelim): 21006
length of query: 183
length of database: 191,569,459
effective HSP length: 110
effective length of query: 73
effective length of database: 132,211,699
effective search space: 9651454027
effective search space used: 9651454027
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)