Query 030088
Match_columns 183
No_of_seqs 166 out of 701
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 08:19:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030088.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030088hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02337 putative high light i 99.5 1.1E-14 2.4E-19 93.7 3.8 33 136-168 1-33 (35)
2 PLN00014 light-harvesting-like 99.5 2E-14 4.4E-19 124.6 2.9 71 102-174 116-196 (250)
3 PLN00084 photosystem II subuni 99.0 1.2E-10 2.6E-15 98.5 2.9 35 138-172 136-171 (214)
4 PF00504 Chloroa_b-bind: Chlor 98.4 8.6E-08 1.9E-12 75.8 0.8 33 133-165 25-57 (156)
5 PF00504 Chloroa_b-bind: Chlor 98.3 2.7E-07 5.8E-12 73.0 2.2 27 134-160 130-156 (156)
6 PLN00147 light-harvesting comp 98.3 5.7E-07 1.2E-11 78.7 4.3 37 139-175 202-238 (252)
7 PLN00100 light-harvesting comp 98.2 8.3E-07 1.8E-11 77.6 3.2 37 138-174 161-197 (246)
8 PLN00089 fucoxanthin-chlorophy 98.2 1E-06 2.2E-11 75.1 3.1 29 140-168 180-208 (209)
9 PLN00099 light-harvesting comp 98.1 1.9E-06 4E-11 75.1 3.9 37 139-175 188-225 (243)
10 PLN00025 photosystem II light 98.1 2.1E-06 4.6E-11 75.6 3.6 37 138-174 207-243 (262)
11 PLN00098 light-harvesting comp 98.1 2.9E-06 6.3E-11 74.9 4.2 38 139-176 217-254 (267)
12 PLN00048 photosystem I light h 98.1 2.3E-06 5E-11 75.2 3.6 37 138-174 211-247 (262)
13 PLN00101 Photosystem I light-h 98.1 1.7E-06 3.6E-11 75.8 2.4 37 139-175 202-238 (250)
14 PLN00048 photosystem I light h 98.1 1.7E-06 3.6E-11 76.2 1.8 33 136-168 84-116 (262)
15 PLN00171 photosystem light-ha 98.0 4E-06 8.6E-11 75.9 4.0 36 139-174 275-310 (324)
16 PLN00120 fucoxanthin-chlorophy 98.0 4E-06 8.7E-11 71.0 3.7 26 139-164 170-195 (202)
17 PLN00187 photosystem II light- 98.0 4.7E-06 1E-10 74.3 4.0 36 139-174 237-272 (286)
18 PLN00101 Photosystem I light-h 98.0 2.2E-06 4.7E-11 75.1 1.5 32 136-167 90-121 (250)
19 PLN00097 photosystem I light h 98.0 5.9E-06 1.3E-10 72.2 3.9 37 139-175 199-235 (244)
20 PLN00098 light-harvesting comp 97.9 5E-06 1.1E-10 73.4 2.0 34 135-168 98-131 (267)
21 PLN00097 photosystem I light h 97.8 8E-06 1.7E-10 71.4 1.4 33 134-166 79-111 (244)
22 PLN00170 photosystem II light- 97.8 9.9E-06 2.2E-10 71.2 1.7 35 134-168 92-126 (255)
23 PLN00025 photosystem II light 97.7 1.1E-05 2.5E-10 71.0 1.6 33 134-166 88-120 (262)
24 PLN00187 photosystem II light- 97.7 1.2E-05 2.6E-10 71.7 1.4 30 135-164 131-160 (286)
25 PLN00147 light-harvesting comp 97.7 2E-05 4.2E-10 69.2 2.0 32 135-166 81-112 (252)
26 PLN00171 photosystem light-ha 97.6 3E-05 6.5E-10 70.3 1.5 29 138-166 149-177 (324)
27 PLN00099 light-harvesting comp 97.4 4.7E-05 1E-09 66.5 0.8 30 134-163 79-108 (243)
28 PLN00100 light-harvesting comp 97.3 9.1E-05 2E-09 65.0 1.5 28 135-162 71-98 (246)
29 PLN00089 fucoxanthin-chlorophy 97.3 0.00018 3.8E-09 61.5 2.8 31 134-164 72-102 (209)
30 PLN00170 photosystem II light- 97.1 0.00017 3.6E-09 63.6 1.2 33 138-171 222-254 (255)
31 PLN02449 ferrochelatase 96.9 0.00088 1.9E-08 63.5 3.5 34 128-169 452-485 (485)
32 PLN00120 fucoxanthin-chlorophy 96.5 0.0003 6.5E-09 59.8 -2.2 28 133-160 60-87 (202)
33 PHA01732 proline-rich protein 79.5 5.1 0.00011 31.1 5.1 14 105-118 46-59 (94)
34 KOG3671 Actin regulatory prote 58.8 22 0.00047 35.1 5.6 21 39-59 389-409 (569)
35 COG3087 FtsN Cell division pro 56.0 11 0.00024 33.9 2.9 22 133-154 197-218 (264)
36 PF06611 DUF1145: Protein of u 48.4 26 0.00057 24.8 3.3 20 143-162 4-23 (61)
37 COG5178 PRP8 U5 snRNP spliceos 46.6 17 0.00037 39.7 2.9 15 64-78 12-26 (2365)
38 PRK10910 hypothetical protein; 45.0 28 0.00061 26.7 3.2 31 142-174 3-33 (89)
39 COG5373 Predicted membrane pro 44.1 2E+02 0.0042 30.4 9.8 42 141-182 163-223 (931)
40 COG5336 Uncharacterized protei 41.1 39 0.00085 27.2 3.6 38 134-173 44-81 (116)
41 PF12911 OppC_N: N-terminal TM 37.6 32 0.00069 22.5 2.2 20 141-160 11-30 (56)
42 COG4062 MtrB Tetrahydromethano 31.5 1.4E+02 0.0031 23.8 5.3 76 96-174 21-98 (108)
43 COG3776 Predicted membrane pro 27.1 89 0.0019 24.2 3.4 20 142-161 5-24 (91)
44 KOG2942 Uncharacterized conser 26.5 15 0.00033 34.1 -1.0 30 136-165 15-48 (361)
45 KOG0660 Mitogen-activated prot 25.4 63 0.0014 30.4 2.8 38 136-181 205-248 (359)
46 PRK00611 putative disulfide ox 24.9 1.1E+02 0.0024 24.7 3.8 45 135-179 32-76 (135)
47 PRK03113 putative disulfide ox 21.0 1.4E+02 0.0031 24.0 3.7 30 135-164 33-62 (139)
48 COG5178 PRP8 U5 snRNP spliceos 20.5 1E+02 0.0022 34.2 3.5 19 94-112 30-48 (2365)
No 1
>PHA02337 putative high light inducible protein
Probab=99.51 E-value=1.1e-14 Score=93.66 Aligned_cols=33 Identities=30% Similarity=0.345 Sum_probs=31.1
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHhCCchHH
Q 030088 136 FIGKNEIANGRWAMFGFAVGMLTEYATGSDFVD 168 (183)
Q Consensus 136 ft~~aEi~NGRlAMiGfv~~ll~E~~TG~gil~ 168 (183)
|++++|+||||+||+||++++++|++||++|.+
T Consensus 1 ft~~aE~~NGRlAMiGfv~~~~~e~~tGq~ipG 33 (35)
T PHA02337 1 MTPEAEIFNGWLAMIGFVAAVGAYATTGQIIPG 33 (35)
T ss_pred CccHHHHHhhHHHHHHHHHHHHHHHHhCCCCCC
Confidence 788999999999999999999999999999864
No 2
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=99.47 E-value=2e-14 Score=124.62 Aligned_cols=71 Identities=30% Similarity=0.483 Sum_probs=52.5
Q ss_pred ceeehhhHHHHHHHHHHHh-----hhccchhccCCCccccc-----chhhhhhhHHHHHHHHHHHHHHHHhCCchHHHHH
Q 030088 102 NVVTLEFQRQKAKELQEYF-----KQKKLEEANVGPFFGFI-----GKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVK 171 (183)
Q Consensus 102 ~~VtlE~qr~kaKeL~~y~-----ke~r~e~~~~~~~~Gft-----~~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Ql~ 171 (183)
.+|+.|..|+| .|++|- .|+-+.+....+.|.|. .++|++|||+|||||++++++|++||+||++|++
T Consensus 116 ~vIdaEv~rRK--~LE~nPe~s~n~epv~FdtSiiPWWaW~~rf~l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg 193 (250)
T PLN00014 116 AVIDAEVVRRK--WLEDNPETSSNDEPVLFDTSIIPWWAWVKRFHLPEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMG 193 (250)
T ss_pred HHHHHHHHHHH--HHhhCccccCCCCCceeecccccHHHHHHhccCchhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHh
Confidence 34556666654 677764 34444444555555543 4699999999999999999999999999999998
Q ss_pred HHH
Q 030088 172 ILL 174 (183)
Q Consensus 172 ~~l 174 (183)
.++
T Consensus 194 ~f~ 196 (250)
T PLN00014 194 NFF 196 (250)
T ss_pred hhh
Confidence 743
No 3
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=99.03 E-value=1.2e-10 Score=98.46 Aligned_cols=35 Identities=34% Similarity=0.469 Sum_probs=32.9
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHh-CCchHHHHHH
Q 030088 138 GKNEIANGRWAMFGFAVGMLTEYAT-GSDFVDQVKI 172 (183)
Q Consensus 138 ~~aEi~NGRlAMiGfv~~ll~E~~T-G~gil~Ql~~ 172 (183)
+.+|+||||+||+||+++++.|++| |+|+++|+..
T Consensus 136 K~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ 171 (214)
T PLN00084 136 KPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNG 171 (214)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhcc
Confidence 6799999999999999999999999 9999999863
No 4
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=98.39 E-value=8.6e-08 Score=75.75 Aligned_cols=33 Identities=30% Similarity=0.479 Sum_probs=29.7
Q ss_pred cccccchhhhhhhHHHHHHHHHHHHHHHHhCCc
Q 030088 133 FFGFIGKNEIANGRWAMFGFAVGMLTEYATGSD 165 (183)
Q Consensus 133 ~~Gft~~aEi~NGRlAMiGfv~~ll~E~~TG~g 165 (183)
.++|.+.+|++|||+||+||++.++.|++++.+
T Consensus 25 ~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~ 57 (156)
T PF00504_consen 25 DFAWYREAELKHGRVAMLAFVGALVQEAGTGFP 57 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTT
T ss_pred hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCC
Confidence 566889999999999999999999999998753
No 5
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=98.32 E-value=2.7e-07 Score=72.96 Aligned_cols=27 Identities=37% Similarity=0.425 Sum_probs=23.1
Q ss_pred ccccchhhhhhhHHHHHHHHHHHHHHH
Q 030088 134 FGFIGKNEIANGRWAMFGFAVGMLTEY 160 (183)
Q Consensus 134 ~Gft~~aEi~NGRlAMiGfv~~ll~E~ 160 (183)
+.+++.+|++|||+|||||+++++.|.
T Consensus 130 ~~~~~~~El~NGRlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 130 KEFMQLAELKNGRLAMLAFAGFVAQEA 156 (156)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445789999999999999999998873
No 6
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=98.31 E-value=5.7e-07 Score=78.69 Aligned_cols=37 Identities=30% Similarity=0.289 Sum_probs=33.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHh
Q 030088 139 KNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILLS 175 (183)
Q Consensus 139 ~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Ql~~~ls 175 (183)
..|+.||||||+||++.++.|++||+|.+++|...++
T Consensus 202 ~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~hla 238 (252)
T PLN00147 202 LKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLS 238 (252)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHhc
Confidence 4799999999999999999999999999999976554
No 7
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=98.22 E-value=8.3e-07 Score=77.61 Aligned_cols=37 Identities=27% Similarity=0.327 Sum_probs=33.7
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Q 030088 138 GKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILL 174 (183)
Q Consensus 138 ~~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Ql~~~l 174 (183)
+..|+.|||+||++|+++++.+++||+|.+++|...+
T Consensus 161 K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~hl 197 (246)
T PLN00100 161 KVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHM 197 (246)
T ss_pred HHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHhc
Confidence 4689999999999999999999999999999987643
No 8
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=98.19 E-value=1e-06 Score=75.09 Aligned_cols=29 Identities=31% Similarity=0.320 Sum_probs=27.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhCCchHH
Q 030088 140 NEIANGRWAMFGFAVGMLTEYATGSDFVD 168 (183)
Q Consensus 140 aEi~NGRlAMiGfv~~ll~E~~TG~gil~ 168 (183)
+|+.||||||+|++++++.|++||+|++.
T Consensus 180 ~El~NGRlAM~a~~g~~~~~~~tg~g~~~ 208 (209)
T PLN00089 180 KELKNGRLAMVAIGGIATGSAITGHGFPY 208 (209)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHcCCCCCc
Confidence 59999999999999999999999999863
No 9
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=98.15 E-value=1.9e-06 Score=75.14 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=32.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHH-HHhCCchHHHHHHHHh
Q 030088 139 KNEIANGRWAMFGFAVGMLTE-YATGSDFVDQVKILLS 175 (183)
Q Consensus 139 ~aEi~NGRlAMiGfv~~ll~E-~~TG~gil~Ql~~~ls 175 (183)
..|+.|||+|||+|+++++.| .+||+|.+++|..-+.
T Consensus 188 ~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hla 225 (243)
T PLN00099 188 VKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 225 (243)
T ss_pred HHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhc
Confidence 479999999999999999999 5799999999876443
No 10
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=98.12 E-value=2.1e-06 Score=75.59 Aligned_cols=37 Identities=30% Similarity=0.341 Sum_probs=33.5
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Q 030088 138 GKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILL 174 (183)
Q Consensus 138 ~~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Ql~~~l 174 (183)
+..|+.||||||+++++.++.|++||+|.+++|...+
T Consensus 207 k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hl 243 (262)
T PLN00025 207 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 243 (262)
T ss_pred HHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHh
Confidence 4679999999999999999999999999999987543
No 11
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=98.10 E-value=2.9e-06 Score=74.90 Aligned_cols=38 Identities=29% Similarity=0.398 Sum_probs=34.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHhh
Q 030088 139 KNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILLSN 176 (183)
Q Consensus 139 ~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Ql~~~ls~ 176 (183)
..|+.|||+||++++++++.+.+||+|.+++|...+..
T Consensus 217 ~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~hlad 254 (267)
T PLN00098 217 TKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLAD 254 (267)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHHHhcC
Confidence 48999999999999999999999999999999765543
No 12
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=98.10 E-value=2.3e-06 Score=75.24 Aligned_cols=37 Identities=24% Similarity=0.259 Sum_probs=33.4
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Q 030088 138 GKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILL 174 (183)
Q Consensus 138 ~~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Ql~~~l 174 (183)
+..|+.||||||+++++.++.|++||+|.+++|...|
T Consensus 211 k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~hl 247 (262)
T PLN00048 211 KLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHL 247 (262)
T ss_pred HHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHHHh
Confidence 3589999999999999999999999999999987543
No 13
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=98.08 E-value=1.7e-06 Score=75.77 Aligned_cols=37 Identities=32% Similarity=0.409 Sum_probs=33.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHh
Q 030088 139 KNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILLS 175 (183)
Q Consensus 139 ~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Ql~~~ls 175 (183)
..|+.||||||++|++.++.+++||+|.+++|...++
T Consensus 202 ~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hla 238 (250)
T PLN00101 202 EKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLS 238 (250)
T ss_pred HHHHhhcchHHHHHhhHhheehccCCChHHHHHHHhc
Confidence 4899999999999999999999999999999976543
No 14
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=98.05 E-value=1.7e-06 Score=76.15 Aligned_cols=33 Identities=27% Similarity=0.495 Sum_probs=29.7
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHhCCchHH
Q 030088 136 FIGKNEIANGRWAMFGFAVGMLTEYATGSDFVD 168 (183)
Q Consensus 136 ft~~aEi~NGRlAMiGfv~~ll~E~~TG~gil~ 168 (183)
|.+++|++||||||+|+++.++.|++++.|++.
T Consensus 84 ~~r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~ 116 (262)
T PLN00048 84 WLAYGEVINGRFAMLGAAGAIAPEILGKAGLIP 116 (262)
T ss_pred HHHHHHhhcchHHHHHHhhHHHHHHhccCCccc
Confidence 446899999999999999999999999888864
No 15
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=98.04 E-value=4e-06 Score=75.90 Aligned_cols=36 Identities=31% Similarity=0.291 Sum_probs=32.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Q 030088 139 KNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILL 174 (183)
Q Consensus 139 ~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Ql~~~l 174 (183)
..|+.||||||+|+++.++.|.+||+|.++++...+
T Consensus 275 ~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~hl 310 (324)
T PLN00171 275 VKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHL 310 (324)
T ss_pred HHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHHh
Confidence 369999999999999999999999999999987544
No 16
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=98.04 E-value=4e-06 Score=71.03 Aligned_cols=26 Identities=27% Similarity=0.241 Sum_probs=24.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhCC
Q 030088 139 KNEIANGRWAMFGFAVGMLTEYATGS 164 (183)
Q Consensus 139 ~aEi~NGRlAMiGfv~~ll~E~~TG~ 164 (183)
..|+.|||+|||||+++++.|+++|.
T Consensus 170 ~~EL~NGRLAMiai~G~~~qe~l~g~ 195 (202)
T PLN00120 170 AIELNQGRAAQMGILALMVHEQLGVE 195 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 47999999999999999999999985
No 17
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=98.02 E-value=4.7e-06 Score=74.26 Aligned_cols=36 Identities=28% Similarity=0.234 Sum_probs=32.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Q 030088 139 KNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILL 174 (183)
Q Consensus 139 ~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Ql~~~l 174 (183)
..|+.||||||+++++.++.+.+||+|.+++|..-+
T Consensus 237 ~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~~Hl 272 (286)
T PLN00187 237 LAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHL 272 (286)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHHHHh
Confidence 579999999999999999999999999999887544
No 18
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=98.00 E-value=2.2e-06 Score=75.07 Aligned_cols=32 Identities=38% Similarity=0.628 Sum_probs=29.4
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHhCCchH
Q 030088 136 FIGKNEIANGRWAMFGFAVGMLTEYATGSDFV 167 (183)
Q Consensus 136 ft~~aEi~NGRlAMiGfv~~ll~E~~TG~gil 167 (183)
|.+++|++||||||+|+++.++.|++++.|++
T Consensus 90 ~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~ 121 (250)
T PLN00101 90 WFVQAELVNGRWAMLGVAGMLLPEVFTKIGII 121 (250)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 45789999999999999999999999998876
No 19
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=97.99 E-value=5.9e-06 Score=72.22 Aligned_cols=37 Identities=38% Similarity=0.410 Sum_probs=33.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHh
Q 030088 139 KNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILLS 175 (183)
Q Consensus 139 ~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Ql~~~ls 175 (183)
.+|+.|||+||++|++.++.+.+||+|.+++|..-+.
T Consensus 199 ~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~Hla 235 (244)
T PLN00097 199 LKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLA 235 (244)
T ss_pred HHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHHhc
Confidence 4899999999999999999999999999999976554
No 20
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=97.90 E-value=5e-06 Score=73.43 Aligned_cols=34 Identities=24% Similarity=0.517 Sum_probs=29.7
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHhCCchHH
Q 030088 135 GFIGKNEIANGRWAMFGFAVGMLTEYATGSDFVD 168 (183)
Q Consensus 135 Gft~~aEi~NGRlAMiGfv~~ll~E~~TG~gil~ 168 (183)
-|.+++|++||||||+|+++.++.|++++.|+++
T Consensus 98 ~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~ 131 (267)
T PLN00098 98 KWFAQAELMHSRWAMLAVAGILIPECLERLGFIE 131 (267)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHhcCCCccc
Confidence 3557899999999999999999999998877643
No 21
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=97.79 E-value=8e-06 Score=71.39 Aligned_cols=33 Identities=27% Similarity=0.489 Sum_probs=29.2
Q ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHHhCCch
Q 030088 134 FGFIGKNEIANGRWAMFGFAVGMLTEYATGSDF 166 (183)
Q Consensus 134 ~Gft~~aEi~NGRlAMiGfv~~ll~E~~TG~gi 166 (183)
+.|.+++|++||||||+|+++.++.|++++.|+
T Consensus 79 ~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~ 111 (244)
T PLN00097 79 LKWFVQAELMHARWAMLGLAGCVAPELLTKIGM 111 (244)
T ss_pred HHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCc
Confidence 345678999999999999999999999998765
No 22
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=97.77 E-value=9.9e-06 Score=71.22 Aligned_cols=35 Identities=20% Similarity=0.415 Sum_probs=30.0
Q ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHHhCCchHH
Q 030088 134 FGFIGKNEIANGRWAMFGFAVGMLTEYATGSDFVD 168 (183)
Q Consensus 134 ~Gft~~aEi~NGRlAMiGfv~~ll~E~~TG~gil~ 168 (183)
+.+.+++|++||||||+|+++.++.|+++|...++
T Consensus 92 ~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~w~~ 126 (255)
T PLN00170 92 LKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 126 (255)
T ss_pred HHHHHHHHhhccHHHHHHHHhhhhHHHccCCChhh
Confidence 34557899999999999999999999999876654
No 23
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=97.74 E-value=1.1e-05 Score=71.01 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=28.7
Q ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHHhCCch
Q 030088 134 FGFIGKNEIANGRWAMFGFAVGMLTEYATGSDF 166 (183)
Q Consensus 134 ~Gft~~aEi~NGRlAMiGfv~~ll~E~~TG~gi 166 (183)
+.|.+++|++||||||+|+++.++.|++++.|+
T Consensus 88 ~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g~ 120 (262)
T PLN00025 88 FARNRELEVIHARWAMLGALGCVTPELLAKNGV 120 (262)
T ss_pred HHHHHHHHHhccHHHHHHHhhhhhHHHhhcCCc
Confidence 345578999999999999999999999987655
No 24
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=97.72 E-value=1.2e-05 Score=71.70 Aligned_cols=30 Identities=30% Similarity=0.440 Sum_probs=26.9
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHhCC
Q 030088 135 GFIGKNEIANGRWAMFGFAVGMLTEYATGS 164 (183)
Q Consensus 135 Gft~~aEi~NGRlAMiGfv~~ll~E~~TG~ 164 (183)
-|.+++|++||||||+|+++.++.|+++|.
T Consensus 131 ~r~REaELiHGRwAMLAvaG~lvpEll~G~ 160 (286)
T PLN00187 131 QRFRECELIHGRWAMLATLGALSVEALTGV 160 (286)
T ss_pred HHHHHHHhhhhHHHHHHhhchhhHHhccCC
Confidence 356799999999999999999999998764
No 25
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=97.67 E-value=2e-05 Score=69.18 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=28.0
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHhCCch
Q 030088 135 GFIGKNEIANGRWAMFGFAVGMLTEYATGSDF 166 (183)
Q Consensus 135 Gft~~aEi~NGRlAMiGfv~~ll~E~~TG~gi 166 (183)
-|.+.+|+.||||||+|+++.++.|++++.|+
T Consensus 81 ~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~ 112 (252)
T PLN00147 81 KWYVQAELVHSRFAMAGVAGILFTDLLRVTGI 112 (252)
T ss_pred HHHHHHHhhccHHHHHHHhhhhHHHHhccCCC
Confidence 35578999999999999999999999987654
No 26
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=97.55 E-value=3e-05 Score=70.31 Aligned_cols=29 Identities=24% Similarity=0.174 Sum_probs=25.5
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHhCCch
Q 030088 138 GKNEIANGRWAMFGFAVGMLTEYATGSDF 166 (183)
Q Consensus 138 ~~aEi~NGRlAMiGfv~~ll~E~~TG~gi 166 (183)
+++|+.||||||+|+++.++.|++++.+.
T Consensus 149 reaELkHGR~AMLA~~G~lv~e~l~~~g~ 177 (324)
T PLN00171 149 FNFEILHARWAMLAALGVVIPEVLDLFGA 177 (324)
T ss_pred HHHHhccchHHHHHHhhHHHHHHhccCCc
Confidence 46899999999999999999999876554
No 27
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=97.40 E-value=4.7e-05 Score=66.45 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=25.9
Q ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHHhC
Q 030088 134 FGFIGKNEIANGRWAMFGFAVGMLTEYATG 163 (183)
Q Consensus 134 ~Gft~~aEi~NGRlAMiGfv~~ll~E~~TG 163 (183)
+.|.+++|+.||||||+|+++.++.|+++.
T Consensus 79 ~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~ 108 (243)
T PLN00099 79 LERYKESELIHCRWAMLAVPGILVPEALGL 108 (243)
T ss_pred HHHHHHHhccCCcHHHHHHhhHHHHHHhcc
Confidence 445578999999999999999999999653
No 28
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=97.32 E-value=9.1e-05 Score=64.98 Aligned_cols=28 Identities=32% Similarity=0.540 Sum_probs=24.9
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHh
Q 030088 135 GFIGKNEIANGRWAMFGFAVGMLTEYAT 162 (183)
Q Consensus 135 Gft~~aEi~NGRlAMiGfv~~ll~E~~T 162 (183)
-|.+.+|+.||||||+|+++.++.|+++
T Consensus 71 ~~~r~aEl~hGR~AMla~~G~~~~E~~~ 98 (246)
T PLN00100 71 PYLQEAELMNGRWAMAATAGILFTDAVG 98 (246)
T ss_pred HHHHHHHhhcchHHHHHHhhhhHHHHhc
Confidence 3557899999999999999999999864
No 29
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=97.28 E-value=0.00018 Score=61.48 Aligned_cols=31 Identities=19% Similarity=0.315 Sum_probs=26.9
Q ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHHhCC
Q 030088 134 FGFIGKNEIANGRWAMFGFAVGMLTEYATGS 164 (183)
Q Consensus 134 ~Gft~~aEi~NGRlAMiGfv~~ll~E~~TG~ 164 (183)
+-|.+++|+.|||+||+++++.++.|.++.-
T Consensus 72 ~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~p 102 (209)
T PLN00089 72 LPWFRESELKHGRAAMLAVAGFIAPDFVRIP 102 (209)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC
Confidence 4456789999999999999999999987643
No 30
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=97.13 E-value=0.00017 Score=63.62 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=28.3
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHhCCchHHHHH
Q 030088 138 GKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVK 171 (183)
Q Consensus 138 ~~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Ql~ 171 (183)
+..|+.|||+||++|++.++.. .||+|-++.|+
T Consensus 222 k~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l~ 254 (255)
T PLN00170 222 KLAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG 254 (255)
T ss_pred HHHHHhhhHHHHHHHHhHheee-ccCCCchhhhc
Confidence 5689999999999998766655 89999998875
No 31
>PLN02449 ferrochelatase
Probab=96.86 E-value=0.00088 Score=63.55 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=29.6
Q ss_pred ccCCCcccccchhhhhhhHHHHHHHHHHHHHHHHhCCchHHH
Q 030088 128 ANVGPFFGFIGKNEIANGRWAMFGFAVGMLTEYATGSDFVDQ 169 (183)
Q Consensus 128 ~~~~~~~Gft~~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Q 169 (183)
..+.+.|||+. +||+||++++..|+++|+|.+++
T Consensus 452 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 485 (485)
T PLN02449 452 PVAVWEWGWTK--------AAMLAVLLLLVLEVTSGFGNLHQ 485 (485)
T ss_pred Cchhhhhcccc--------hHHHHHHHHHHHHHHcCCCcCCC
Confidence 34568899987 99999999999999999999874
No 32
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=96.49 E-value=0.0003 Score=59.77 Aligned_cols=28 Identities=29% Similarity=0.303 Sum_probs=24.5
Q ss_pred cccccchhhhhhhHHHHHHHHHHHHHHH
Q 030088 133 FFGFIGKNEIANGRWAMFGFAVGMLTEY 160 (183)
Q Consensus 133 ~~Gft~~aEi~NGRlAMiGfv~~ll~E~ 160 (183)
.+-|.+.+|+.||||||+++++.++.|.
T Consensus 60 ~~~~~r~~ElkhGRlAMlA~~G~~~~~~ 87 (202)
T PLN00120 60 KFDRLRYVEIKHGRISMLAVVGYLVTEA 87 (202)
T ss_pred HHHHHHHHHhhcccHHHHhhccceeecc
Confidence 3445689999999999999999999996
No 33
>PHA01732 proline-rich protein
Probab=79.55 E-value=5.1 Score=31.06 Aligned_cols=14 Identities=14% Similarity=0.154 Sum_probs=5.7
Q ss_pred ehhhHHHHHHHHHH
Q 030088 105 TLEFQRQKAKELQE 118 (183)
Q Consensus 105 tlE~qr~kaKeL~~ 118 (183)
-+..+.-+.++-+.
T Consensus 46 ki~~~~skrgq~qq 59 (94)
T PHA01732 46 KIREAQSKRGQKQQ 59 (94)
T ss_pred HHHHHHHHHHHhhh
Confidence 34444434334333
No 34
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=58.76 E-value=22 Score=35.10 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=9.0
Q ss_pred ceEEeecCCCCCCCCCCCCCC
Q 030088 39 PFTVTCSQGDGPIRRPVAPPL 59 (183)
Q Consensus 39 ~~~ir~s~~~gp~rrp~ap~~ 59 (183)
+..+|.--.--|+-||.+.+.
T Consensus 389 ~~Pgr~aPp~PP~~~ps~~p~ 409 (569)
T KOG3671|consen 389 APPGRPAPPPPPLGNPSAVPV 409 (569)
T ss_pred CCCCCCCCCCCCCCCCCCCCC
Confidence 344444433334444444443
No 35
>COG3087 FtsN Cell division protein [Cell division and chromosome partitioning]
Probab=55.96 E-value=11 Score=33.94 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=17.6
Q ss_pred cccccchhhhhhhHHHHHHHHH
Q 030088 133 FFGFIGKNEIANGRWAMFGFAV 154 (183)
Q Consensus 133 ~~Gft~~aEi~NGRlAMiGfv~ 154 (183)
.|+=..+||..-+||||+||=+
T Consensus 197 aFk~~~qAE~~rA~LAmlG~ss 218 (264)
T COG3087 197 AFKTAEQAESVRAQLAMLGISS 218 (264)
T ss_pred ccccHHHHHHHHHHHHhccccc
Confidence 3444468999999999999954
No 36
>PF06611 DUF1145: Protein of unknown function (DUF1145); InterPro: IPR009525 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=48.45 E-value=26 Score=24.78 Aligned_cols=20 Identities=20% Similarity=0.183 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHHHHHHHh
Q 030088 143 ANGRWAMFGFAVGMLTEYAT 162 (183)
Q Consensus 143 ~NGRlAMiGfv~~ll~E~~T 162 (183)
.=||++|++|...++.-++.
T Consensus 4 ~lgK~l~l~~W~~~l~Nl~~ 23 (61)
T PF06611_consen 4 NLGKLLMLFFWLVLLLNLFH 23 (61)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 45999999999999988873
No 37
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=46.58 E-value=17 Score=39.72 Aligned_cols=15 Identities=47% Similarity=0.873 Sum_probs=7.1
Q ss_pred CCCCCCCCCCCCCCC
Q 030088 64 PPSTVKPVPPSPPQP 78 (183)
Q Consensus 64 ~~~~~~p~pps~p~~ 78 (183)
||+|+-=-|||+|+|
T Consensus 12 pppppg~epps~ppp 26 (2365)
T COG5178 12 PPPPPGFEPPSQPPP 26 (2365)
T ss_pred cccCCCCCCCCCCCC
Confidence 333444445666553
No 38
>PRK10910 hypothetical protein; Provisional
Probab=44.97 E-value=28 Score=26.65 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=21.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Q 030088 142 IANGRWAMFGFAVGMLTEYATGSDFVDQVKILL 174 (183)
Q Consensus 142 i~NGRlAMiGfv~~ll~E~~TG~gil~Ql~~~l 174 (183)
+.-||++|+++.+.++.-++ +.+.+.+..++
T Consensus 3 i~lGk~l~l~vW~~ll~NL~--~PFp~pl~~~l 33 (89)
T PRK10910 3 INLGRLLMLCVWGFLILNLV--HPFPRPLNIFV 33 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHc--ccCCchHHHHH
Confidence 34599999999999888876 44444444433
No 39
>COG5373 Predicted membrane protein [Function unknown]
Probab=44.11 E-value=2e+02 Score=30.39 Aligned_cols=42 Identities=24% Similarity=0.344 Sum_probs=26.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHH-------------------hCCchHHHHHHHHhhcccccC
Q 030088 141 EIANGRWAMFGFAVGMLTEYA-------------------TGSDFVDQVKILLSNFGILDL 182 (183)
Q Consensus 141 Ei~NGRlAMiGfv~~ll~E~~-------------------TG~gil~Ql~~~ls~lGIi~~ 182 (183)
|.--+-.|.+|++.+..-|.+ ||.|++.-.+.+....||.|+
T Consensus 163 ~vRl~~aAv~~lvL~~~Ge~lRr~~~~~~~~~y~~aP~vLtgaGa~~Lf~tvyAA~~iyd~ 223 (931)
T COG5373 163 EVRLAGAAVLGLVLVAGGEWLRRKGFPVPRQGYANAPAVLTGAGALVLFGTVYAAYGIYDL 223 (931)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHhccCccccccccCCchhhcccchHHHHHHHHHHhccccc
Confidence 333344555666666666654 555666667777888888775
No 40
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.15 E-value=39 Score=27.21 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=29.9
Q ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHHhCCchHHHHHHH
Q 030088 134 FGFIGKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKIL 173 (183)
Q Consensus 134 ~Gft~~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Ql~~~ 173 (183)
-+|+-..|.+-| -|+|.++++++..+-|..-+..+.++
T Consensus 44 ~a~klssefIsG--ilVGa~iG~llD~~agTsPwglIv~l 81 (116)
T COG5336 44 QAFKLSSEFISG--ILVGAGIGWLLDKFAGTSPWGLIVFL 81 (116)
T ss_pred hhHHHHHHHHHH--HHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 346678999998 48999999999999888777665543
No 41
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=37.59 E-value=32 Score=22.51 Aligned_cols=20 Identities=10% Similarity=0.292 Sum_probs=14.0
Q ss_pred hhhhhHHHHHHHHHHHHHHH
Q 030088 141 EIANGRWAMFGFAVGMLTEY 160 (183)
Q Consensus 141 Ei~NGRlAMiGfv~~ll~E~ 160 (183)
+...-|+||+|++++++.=+
T Consensus 11 ~f~~nk~a~~gl~il~~~vl 30 (56)
T PF12911_consen 11 RFRRNKLAVIGLIILLILVL 30 (56)
T ss_pred HHHhCchHHHHHHHHHHHHH
Confidence 44556899999987666543
No 42
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=31.52 E-value=1.4e+02 Score=23.78 Aligned_cols=76 Identities=14% Similarity=0.223 Sum_probs=40.4
Q ss_pred eeccCCceeehh--hHHHHHHHHHHHhhhccchhccCCCcccccchhhhhhhHHHHHHHHHHHHHHHHhCCchHHHHHHH
Q 030088 96 AVVEDKNVVTLE--FQRQKAKELQEYFKQKKLEEANVGPFFGFIGKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKIL 173 (183)
Q Consensus 96 ~~~s~k~~VtlE--~qr~kaKeL~~y~ke~r~e~~~~~~~~Gft~~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Ql~~~ 173 (183)
++..+..+++++ ---.+.|+|+.+..+.--.-+....-|+=.+..| |-.+|-|++.-.+.-++-|-+|...+.++
T Consensus 21 vae~~edvi~ldv~pi~Eqi~kLe~~vddl~~sldPstp~lnS~PgRe---gv~~~aG~~tna~yGfviGl~i~aLlAli 97 (108)
T COG4062 21 VAEGFEDVIFLDVDPIEEQIKKLETLVDDLENSLDPSTPPLNSFPGRE---GVYATAGYLTNAFYGFVIGLGIMALLALI 97 (108)
T ss_pred HhhccCceEEEeccHHHHHHHHHHHHHHHHHhccCCCCCCcccCCCcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666433 2344667788887643211122223333223333 55677777777776666666665555544
Q ss_pred H
Q 030088 174 L 174 (183)
Q Consensus 174 l 174 (183)
+
T Consensus 98 l 98 (108)
T COG4062 98 L 98 (108)
T ss_pred H
Confidence 3
No 43
>COG3776 Predicted membrane protein [Function unknown]
Probab=27.06 E-value=89 Score=24.25 Aligned_cols=20 Identities=15% Similarity=0.129 Sum_probs=17.2
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 030088 142 IANGRWAMFGFAVGMLTEYA 161 (183)
Q Consensus 142 i~NGRlAMiGfv~~ll~E~~ 161 (183)
++-||++|.+|...++..++
T Consensus 5 l~lgkl~~l~vW~~lL~NL~ 24 (91)
T COG3776 5 LNLGKLLMLFVWLFLLLNLV 24 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 67799999999988888776
No 44
>KOG2942 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.49 E-value=15 Score=34.07 Aligned_cols=30 Identities=30% Similarity=0.502 Sum_probs=25.8
Q ss_pred ccchhhhhhhHHHHHH----HHHHHHHHHHhCCc
Q 030088 136 FIGKNEIANGRWAMFG----FAVGMLTEYATGSD 165 (183)
Q Consensus 136 ft~~aEi~NGRlAMiG----fv~~ll~E~~TG~g 165 (183)
+....|.+||-||..| .-++++.|.++|+.
T Consensus 15 ~r~egca~n~~~~~tGn~~n~pIG~v~~af~~K~ 48 (361)
T KOG2942|consen 15 RRREGCAINGAWAITGNYTNLPIGLVIEAFTGKV 48 (361)
T ss_pred chhccccccchHhhhcccccccceeeeecccccc
Confidence 4457889999999999 88999999999864
No 45
>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]
Probab=25.36 E-value=63 Score=30.39 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=28.4
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHhCCchH------HHHHHHHhhccccc
Q 030088 136 FIGKNEIANGRWAMFGFAVGMLTEYATGSDFV------DQVKILLSNFGILD 181 (183)
Q Consensus 136 ft~~aEi~NGRlAMiGfv~~ll~E~~TG~gil------~Ql~~~ls~lGIi~ 181 (183)
||+...+|- ++-++.|+++|++++ +|+..++..+|--+
T Consensus 205 Yt~aiDiWS--------vGCI~AEmL~gkplFpG~d~v~Ql~lI~~~lGtP~ 248 (359)
T KOG0660|consen 205 YTKAIDIWS--------VGCILAEMLTGKPLFPGKDYVHQLQLILELLGTPS 248 (359)
T ss_pred ccchhhhhh--------hhHHHHHHHcCCCCCCCCchHHHHHHHHHhcCCCC
Confidence 555555553 466889999998874 89999999888643
No 46
>PRK00611 putative disulfide oxidoreductase; Provisional
Probab=24.90 E-value=1.1e+02 Score=24.73 Aligned_cols=45 Identities=11% Similarity=-0.024 Sum_probs=25.9
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHhhccc
Q 030088 135 GFIGKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILLSNFGI 179 (183)
Q Consensus 135 Gft~~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Ql~~~ls~lGI 179 (183)
|+.+=.==|-=|++|++++...+.-.+.+..........++..|+
T Consensus 32 gl~PC~LCiyQRi~~~~l~l~~~la~~~~~~~~r~y~l~~a~~G~ 76 (135)
T PRK00611 32 NVEPCVLCYYQRICLFPLVVILGIAAYREDSSIKIYALPLALVGF 76 (135)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 344433446669999999886666666554433333334444443
No 47
>PRK03113 putative disulfide oxidoreductase; Provisional
Probab=21.03 E-value=1.4e+02 Score=23.99 Aligned_cols=30 Identities=13% Similarity=-0.039 Sum_probs=19.3
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHhCC
Q 030088 135 GFIGKNEIANGRWAMFGFAVGMLTEYATGS 164 (183)
Q Consensus 135 Gft~~aEi~NGRlAMiGfv~~ll~E~~TG~ 164 (183)
|+.+=.==|-=|++|+++..+.++-++...
T Consensus 33 gl~PC~LCi~QRi~~~~l~l~~lia~~~~~ 62 (139)
T PRK03113 33 KFEPCVLCWYQRIFMYPFVLWLGIAVVKKD 62 (139)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 444433345568999988877777666543
No 48
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=20.53 E-value=1e+02 Score=34.18 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=9.3
Q ss_pred CceeccCCceeehhhHHHH
Q 030088 94 PAAVVEDKNVVTLEFQRQK 112 (183)
Q Consensus 94 ~~~~~s~k~~VtlE~qr~k 112 (183)
+++-...++..+++.-+..
T Consensus 30 Pg~~~~~r~~k~~~~~g~~ 48 (2365)
T COG5178 30 PGVNVKKRSRKQLSIVGDI 48 (2365)
T ss_pred CCcchhhhccccHHHhhhh
Confidence 3444455555555554433
Done!