Query 030088
Match_columns 183
No_of_seqs 166 out of 701
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 13:16:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030088.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030088hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bhw_A Chlorophyll A-B binding 98.6 2.1E-08 7.2E-13 84.9 3.8 37 138-174 177-213 (232)
2 3pl9_A Chlorophyll A-B binding 98.5 5E-08 1.7E-12 83.7 4.4 39 137-175 193-231 (243)
3 2wsc_2 LHCA2, type II chloroph 98.4 3.3E-08 1.1E-12 85.7 -1.2 36 136-171 216-251 (269)
4 2wsc_3 LHCA3, type II chloroph 98.3 6.5E-08 2.2E-12 84.1 -0.3 35 138-172 225-259 (276)
5 2wsc_4 Chlorophyll A-B binding 98.1 1.7E-07 5.8E-12 80.4 -1.4 36 132-167 86-121 (251)
6 2wsc_1 AT3G54890, LHCA1; photo 98.1 4.1E-07 1.4E-11 77.7 -0.8 34 138-171 188-222 (241)
7 3pl9_A Chlorophyll A-B binding 98.0 2.5E-06 8.5E-11 73.3 2.6 31 134-164 89-119 (243)
8 2wsc_2 LHCA2, type II chloroph 97.8 4.2E-06 1.4E-10 72.5 1.8 35 133-167 98-132 (269)
9 2wsc_4 Chlorophyll A-B binding 97.8 2.6E-06 8.8E-11 73.1 -0.2 34 138-172 201-234 (251)
10 2wsc_3 LHCA3, type II chloroph 97.8 3.1E-07 1.1E-11 79.9 -6.5 33 135-167 97-129 (276)
11 2bhw_A Chlorophyll A-B binding 97.7 1.2E-05 4E-10 68.1 2.5 30 134-163 58-87 (232)
12 2wsc_1 AT3G54890, LHCA1; photo 96.5 7.4E-05 2.5E-09 63.8 -4.7 29 134-162 80-108 (241)
No 1
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=98.60 E-value=2.1e-08 Score=84.88 Aligned_cols=37 Identities=27% Similarity=0.330 Sum_probs=33.8
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Q 030088 138 GKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILL 174 (183)
Q Consensus 138 ~~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Ql~~~l 174 (183)
+.+|++|||+||+||+++++.|++||+|+++|+...+
T Consensus 177 ~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~ 213 (232)
T 2bhw_A 177 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 213 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHH
T ss_pred HHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHh
Confidence 4689999999999999999999999999999987544
No 2
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=98.53 E-value=5e-08 Score=83.73 Aligned_cols=39 Identities=28% Similarity=0.272 Sum_probs=35.2
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHh
Q 030088 137 IGKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKILLS 175 (183)
Q Consensus 137 t~~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Ql~~~ls 175 (183)
.+.+|+.|||+||+||++.++.|++||+|.++|+..-++
T Consensus 193 ~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~~Hla 231 (243)
T 3pl9_A 193 LQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHLS 231 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHHHHhc
Confidence 357999999999999999999999999999999986543
No 3
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=98.35 E-value=3.3e-08 Score=85.69 Aligned_cols=36 Identities=28% Similarity=0.359 Sum_probs=32.7
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHhCCchHHHHH
Q 030088 136 FIGKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVK 171 (183)
Q Consensus 136 ft~~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Ql~ 171 (183)
+.+.+|++|||+||+||+++++.|++||+|+++++.
T Consensus 216 ~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~ 251 (269)
T 2wsc_2 216 ELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF 251 (269)
T ss_dssp TSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCS
T ss_pred HHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 346789999999999999999999999999998865
No 4
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=98.31 E-value=6.5e-08 Score=84.12 Aligned_cols=35 Identities=23% Similarity=0.233 Sum_probs=30.7
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHhCCchHHHHHH
Q 030088 138 GKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKI 172 (183)
Q Consensus 138 ~~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Ql~~ 172 (183)
+.+|++|||+||+||+++++.|++||+|+++|+..
T Consensus 225 r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~ 259 (276)
T 2wsc_3 225 KLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLD 259 (276)
T ss_dssp CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC---
T ss_pred HHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 57899999999999999999999999999988764
No 5
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=98.14 E-value=1.7e-07 Score=80.36 Aligned_cols=36 Identities=33% Similarity=0.548 Sum_probs=32.7
Q ss_pred CcccccchhhhhhhHHHHHHHHHHHHHHHHhCCchH
Q 030088 132 PFFGFIGKNEIANGRWAMFGFAVGMLTEYATGSDFV 167 (183)
Q Consensus 132 ~~~Gft~~aEi~NGRlAMiGfv~~ll~E~~TG~gil 167 (183)
..+.|.+.+|++||||||+||++.++.|++++.|++
T Consensus 86 e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~ 121 (251)
T 2wsc_4 86 ENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 121 (251)
T ss_dssp CCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence 357788999999999999999999999999998766
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=98.05 E-value=4.1e-07 Score=77.70 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=30.7
Q ss_pred chhhhhhhHHHHHHHHHHHHHH-HHhCCchHHHHH
Q 030088 138 GKNEIANGRWAMFGFAVGMLTE-YATGSDFVDQVK 171 (183)
Q Consensus 138 ~~aEi~NGRlAMiGfv~~ll~E-~~TG~gil~Ql~ 171 (183)
+.+|++|||+||+||++.++.| ++||+|.++++.
T Consensus 188 r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~ 222 (241)
T 2wsc_1 188 KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 222 (241)
T ss_dssp CTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSS
T ss_pred HHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHH
Confidence 5789999999999999999999 589999998765
No 7
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=97.98 E-value=2.5e-06 Score=73.25 Aligned_cols=31 Identities=29% Similarity=0.428 Sum_probs=28.0
Q ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHHhCC
Q 030088 134 FGFIGKNEIANGRWAMFGFAVGMLTEYATGS 164 (183)
Q Consensus 134 ~Gft~~aEi~NGRlAMiGfv~~ll~E~~TG~ 164 (183)
+.|.+++|++||||||+|+++.++.|+++|.
T Consensus 89 l~r~ReaELkHGRwAMLAvlG~lvpE~l~g~ 119 (243)
T 3pl9_A 89 LQRFRECELIHGRWAMLATLGALTVEGLTGI 119 (243)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHhhhhcchhHHHHHHHHHhHHhhcCc
Confidence 4567899999999999999999999999874
No 8
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=97.84 E-value=4.2e-06 Score=72.52 Aligned_cols=35 Identities=26% Similarity=0.436 Sum_probs=30.9
Q ss_pred cccccchhhhhhhHHHHHHHHHHHHHHHHhCCchH
Q 030088 133 FFGFIGKNEIANGRWAMFGFAVGMLTEYATGSDFV 167 (183)
Q Consensus 133 ~~Gft~~aEi~NGRlAMiGfv~~ll~E~~TG~gil 167 (183)
.+.|.+++|+.||||||+|+++.++.|++++.|++
T Consensus 98 ~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~ 132 (269)
T 2wsc_2 98 SLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL 132 (269)
T ss_dssp CCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred HHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence 46678999999999999999999999999876654
No 9
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=97.81 E-value=2.6e-06 Score=73.06 Aligned_cols=34 Identities=32% Similarity=0.419 Sum_probs=31.2
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHhCCchHHHHHH
Q 030088 138 GKNEIANGRWAMFGFAVGMLTEYATGSDFVDQVKI 172 (183)
Q Consensus 138 ~~aEi~NGRlAMiGfv~~ll~E~~TG~gil~Ql~~ 172 (183)
+..|+.|||+ ||||+++++.|++||++.++++..
T Consensus 201 k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~ 234 (251)
T 2wsc_4 201 KEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQ 234 (251)
T ss_dssp TTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTT
T ss_pred HHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHH
Confidence 5789999999 999999999999999999988653
No 10
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=97.77 E-value=3.1e-07 Score=79.88 Aligned_cols=33 Identities=27% Similarity=0.482 Sum_probs=30.7
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHhCCchH
Q 030088 135 GFIGKNEIANGRWAMFGFAVGMLTEYATGSDFV 167 (183)
Q Consensus 135 Gft~~aEi~NGRlAMiGfv~~ll~E~~TG~gil 167 (183)
+|.+++|++||||||+|+++.++.|++++.|++
T Consensus 97 ~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~ 129 (276)
T 2wsc_3 97 KWLAYGEIINGRYAMLGAVGAIAPEILGKAGLI 129 (276)
T ss_dssp THHHHHHHHHHTTSCCTTTSTTSCSSCSSCCCC
T ss_pred HHHHHHHhhcccchhhhHHHHHHHHHhcccccc
Confidence 788999999999999999999999999987765
No 11
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=97.72 E-value=1.2e-05 Score=68.10 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=26.4
Q ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHHhC
Q 030088 134 FGFIGKNEIANGRWAMFGFAVGMLTEYATG 163 (183)
Q Consensus 134 ~Gft~~aEi~NGRlAMiGfv~~ll~E~~TG 163 (183)
+.|.+++|+.||||||+|+++.++.|+++.
T Consensus 58 ~~r~ReaELkHGR~AMLA~~G~lv~E~l~~ 87 (232)
T 2bhw_A 58 FSKNRELEVIHSRWAMLGALGSVFPELLSR 87 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccchHHHhhhhhhhHHHhcc
Confidence 345688999999999999999999999764
No 12
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=96.48 E-value=7.4e-05 Score=63.80 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=25.0
Q ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHHh
Q 030088 134 FGFIGKNEIANGRWAMFGFAVGMLTEYAT 162 (183)
Q Consensus 134 ~Gft~~aEi~NGRlAMiGfv~~ll~E~~T 162 (183)
+-|.+++|+.||||||+|+++.++.|+++
T Consensus 80 ~~~~r~~El~hgR~AMla~~G~~~~e~~~ 108 (241)
T 2wsc_1 80 LERYKESELIHCRWAMLAVPGILVPEALG 108 (241)
T ss_dssp HHHSHHHHHHHHHHHTTTSTTSSSTTCCC
T ss_pred HHHHHHHHHhhchhHHhhhhcccchhhcc
Confidence 44568899999999999999999998753
Done!