Query 030089
Match_columns 183
No_of_seqs 107 out of 246
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 08:20:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030089.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030089hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3195 Uncharacterized membra 100.0 5.1E-66 1.1E-70 425.8 16.6 171 9-180 30-200 (213)
2 PF05832 DUF846: Eukaryotic pr 100.0 3.8E-61 8.2E-66 382.8 17.7 142 10-152 1-142 (142)
3 PF02229 PC4: Transcriptional 62.3 5.7 0.00012 26.7 1.7 24 59-83 13-36 (56)
4 PF09685 Tic20: Tic20-like pro 39.8 1E+02 0.0022 22.1 5.5 61 98-158 40-100 (109)
5 KOG1693 emp24/gp25L/p24 family 39.1 21 0.00046 30.5 1.9 30 86-115 157-186 (209)
6 PF07127 Nodulin_late: Late no 37.5 24 0.00052 23.3 1.7 30 127-156 5-34 (54)
7 PF04971 Lysis_S: Lysis protei 37.1 50 0.0011 23.6 3.3 22 138-161 45-66 (68)
8 PLN02248 cellulose synthase-li 33.2 4.9E+02 0.011 27.8 10.8 26 134-159 1071-1096(1135)
9 PF08043 Xin: Xin repeat; Int 32.5 30 0.00064 18.1 1.1 10 81-90 5-14 (16)
10 PF13127 DUF3955: Protein of u 31.8 52 0.0011 22.8 2.7 27 48-83 9-35 (63)
11 PF10777 YlaC: Inner membrane 31.7 1.2E+02 0.0025 25.0 5.0 15 12-26 34-48 (155)
12 PF07330 DUF1467: Protein of u 24.0 1.8E+02 0.004 21.4 4.5 32 93-124 41-72 (85)
13 KOG4812 Golgi-associated prote 22.9 3.7E+02 0.008 23.9 6.8 59 99-157 158-252 (262)
14 PF09951 DUF2185: Protein of u 22.8 69 0.0015 23.7 2.1 36 58-93 3-39 (89)
No 1
>KOG3195 consensus Uncharacterized membrane protein NPD008/CGI-148 [General function prediction only]
Probab=100.00 E-value=5.1e-66 Score=425.82 Aligned_cols=171 Identities=49% Similarity=0.893 Sum_probs=164.4
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHhhhhcccceeeeeeeeeeccCCCceeEEEEe
Q 030089 9 ENYANPKTCFFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDMGESVWKFEC 88 (183)
Q Consensus 9 ~~~~HP~~~~fhl~fK~~ai~~Yl~~~~f~~~fi~~Fv~~ilLla~DFw~vKNItGR~LVGLRWwn~vd~dG~s~W~FEs 88 (183)
++++||++++||++||.+||++|++|.+|++||+.+||++++|+|+|||+|||||||+||||||||++|+||+|||+|||
T Consensus 30 qk~~hP~~~fFHL~Fr~aAi~~Yil~~~f~nSFi~~fv~ivlLLs~DFW~VKNvtGRlLVGLRWWN~id~dG~ShW~FES 109 (213)
T KOG3195|consen 30 QKSSHPVALFFHLFFRGAAIVFYILCELFSNSFITQFVVIVLLLSCDFWTVKNVTGRLLVGLRWWNEIDVDGESHWVFES 109 (213)
T ss_pred hhccCchHHHHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhheeecccccEEEeeeeeeecCCCCceeEEEec
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHhhhccchhhhHHHHHHHHHHH
Q 030089 89 LDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQIQQFASQTI 168 (183)
Q Consensus 89 ~~~~~~~~~n~~ds~~FW~~l~~~p~~W~~~~i~~l~~l~~~wl~l~~i~~~l~~~Nl~gf~kC~~~~~~~~~~~a~~~~ 168 (183)
+|++.. .+|++|||+||++||++|++|+++++.+++++++.|++++++|++|+++|+|||.||+++++++.++.+++..
T Consensus 110 ~k~~s~-~~n~~dsriFWlgL~~~pv~W~if~v~al~~fk~~wL~lv~vg~~l~~aN~~Gy~rC~~~a~~~~~q~~~ds~ 188 (213)
T KOG3195|consen 110 AKQSSP-NVNAIDSRIFWLGLYLCPVIWIIFAVFALFRFKFKWLILVVVGIALNSANLYGYSRCDKDAKKKFQQVASDSN 188 (213)
T ss_pred cccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheeeecCCccchhHHHHHHHHH
Confidence 988643 4899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHhhc
Q 030089 169 ASGFTSTLQSAF 180 (183)
Q Consensus 169 ~~~~~~~~~~~~ 180 (183)
..+..++..++.
T Consensus 189 ~~~f~~~~~~~~ 200 (213)
T KOG3195|consen 189 KWIFLSSVLSAK 200 (213)
T ss_pred HHHHHHhhhccc
Confidence 999888776654
No 2
>PF05832 DUF846: Eukaryotic protein of unknown function (DUF846); InterPro: IPR008564 This family consists of a number of conserved eukaryotic proteins of unknown function.; GO: 0016021 integral to membrane
Probab=100.00 E-value=3.8e-61 Score=382.75 Aligned_cols=142 Identities=51% Similarity=0.969 Sum_probs=138.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHhhhhcccceeeeeeeeeeccCCCceeEEEEee
Q 030089 10 NYANPKTCFFHVLFKGAALAFYILSALFFDSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDMGESVWKFECL 89 (183)
Q Consensus 10 ~~~HP~~~~fhl~fK~~ai~~Yl~~~~f~~~fi~~Fv~~ilLla~DFw~vKNItGR~LVGLRWwn~vd~dG~s~W~FEs~ 89 (183)
|++||++|++|++||++|+++|++|++|++|++.+|+++++|+|+|||+|||||||+|||||||||+||||+++|+|||+
T Consensus 1 ~s~hP~~~~fhl~fK~~ai~~y~~~~~f~~~fi~~fv~~illla~DFw~vKNitGR~LVGLRWwn~~~~~g~s~w~FEs~ 80 (142)
T PF05832_consen 1 KSSHPVACFFHLFFKIAAILVYLFGGLFSDSFIIIFVITILLLAIDFWTVKNITGRLLVGLRWWNEVDEDGESHWVFESR 80 (142)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccceEEeeeeEEEeCCCCCeEEEEEEc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHhhhcc
Q 030089 90 DHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKC 152 (183)
Q Consensus 90 ~~~~~~~~n~~ds~~FW~~l~~~p~~W~~~~i~~l~~l~~~wl~l~~i~~~l~~~Nl~gf~kC 152 (183)
+++ .+++|+.|||+||++||++|++|+++++.+++++++.|++++++|++++++|+|||+||
T Consensus 81 ~~~-~~~~n~~ds~~FW~~l~~~~~~W~~~~i~~l~~l~~~~l~l~~i~~~l~~~Nl~gf~kC 142 (142)
T PF05832_consen 81 DQP-RFVPNPIDSRIFWLTLYATPLIWIILLIIALISLQFFWLLLVIIALILNGANLYGFYKC 142 (142)
T ss_pred CCc-cCcCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 876 34569999999999999999999999999999999999999999999999999999999
No 3
>PF02229 PC4: Transcriptional Coactivator p15 (PC4); InterPro: IPR003173 p15 has a bipartite structure composed of an amino-terminal regulatory domain and a carboxy-terminal cryptic DNA-binding domain []. The DNA-binding activity of the carboxy-terminal is disguised by the amino-terminal p15 domain. Activity is controlled by protein kinases that target the regulatory domain.; GO: 0003677 DNA binding, 0003713 transcription coactivator activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3PM7_B 2LTD_A 2LTT_B 3OBH_B 2L3A_B 2PHE_B 1PCF_B 2C62_B.
Probab=62.30 E-value=5.7 Score=26.72 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=19.1
Q ss_pred hhhcccceeeeeeeeeeccCCCcee
Q 030089 59 VKNVSGRILVGLRWWNEINDMGESV 83 (183)
Q Consensus 59 vKNItGR~LVGLRWwn~vd~dG~s~ 83 (183)
+++--|+.+|.+|-|++ |+||+..
T Consensus 13 v~~fkG~~~vdIRe~y~-~~~g~~~ 36 (56)
T PF02229_consen 13 VSEFKGKPYVDIREWYE-KKDGEWK 36 (56)
T ss_dssp EEEETTSEEEEEEEEET-TSSS-EE
T ss_pred EEEeCCeEEEEEEeeEE-cCCCcCc
Confidence 56678999999999999 7788644
No 4
>PF09685 Tic20: Tic20-like protein; InterPro: IPR019109 This entry represents a group of uncharacterised conserved proteins including a chloroplast protein import component called Tic20. Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accomplished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex located at the inner membrane. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. Tic20 is a core member of the Tic complex and is deeply embedded in the inner envelope membrane. It is thought to function as a protein conducting component of the Tic complex [].
Probab=39.84 E-value=1e+02 Score=22.13 Aligned_cols=61 Identities=20% Similarity=0.267 Sum_probs=29.1
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHhhhccchhhhH
Q 030089 98 NKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCRKDAKK 158 (183)
Q Consensus 98 n~~ds~~FW~~l~~~p~~W~~~~i~~l~~l~~~wl~l~~i~~~l~~~Nl~gf~kC~~~~~~ 158 (183)
+..|+-.|-++..+..+++.+............+++..++.+..-...++|-+|+.++...
T Consensus 40 ha~qal~~~i~~~i~~~i~~~l~~~~~~~~~i~~~~~~~~~l~~~v~~I~~~~~a~~g~~~ 100 (109)
T PF09685_consen 40 HAKQALNFQITFLIISIILFILSFILIFFIGIGILLLIVLWLLSLVLSIIGAIKANKGEPY 100 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCee
Confidence 4444444444433333333333332211222233444444455566778888888877543
No 5
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.11 E-value=21 Score=30.55 Aligned_cols=30 Identities=13% Similarity=0.423 Sum_probs=22.8
Q ss_pred EEeecccccccCCcchhhHHHHHHHHHHHH
Q 030089 86 FECLDHESMARMNKKDSWLFWWTLYLSAVA 115 (183)
Q Consensus 86 FEs~~~~~~~~~n~~ds~~FW~~l~~~p~~ 115 (183)
|.+|...++.+++..|+|++|++++...++
T Consensus 157 ~R~RE~rn~~tv~st~~Rv~~~Sl~e~~~v 186 (209)
T KOG1693|consen 157 YRLREARNRSTVESTNSRVTWWSLLEIIAV 186 (209)
T ss_pred HHHHHhcCccchhcccchhhHHHHHHHHHH
Confidence 444544566789999999999999886554
No 6
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=37.51 E-value=24 Score=23.33 Aligned_cols=30 Identities=20% Similarity=0.474 Sum_probs=25.4
Q ss_pred HhHHHHHHHHHHHHHHhhHHHhhhccchhh
Q 030089 127 FQADYLLVVGVCLTLSIANIIGFTKCRKDA 156 (183)
Q Consensus 127 l~~~wl~l~~i~~~l~~~Nl~gf~kC~~~~ 156 (183)
+++.|.++..+.+.+..+|...+..|..++
T Consensus 5 lKFvY~mIiflslflv~~~~~~~~~C~~d~ 34 (54)
T PF07127_consen 5 LKFVYAMIIFLSLFLVVTNVDAIIPCKTDS 34 (54)
T ss_pred hhhHHHHHHHHHHHHhhcccCCCcccCccc
Confidence 567888888889999999998999998765
No 7
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=37.08 E-value=50 Score=23.57 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=15.5
Q ss_pred HHHHHhhHHHhhhccchhhhHHHH
Q 030089 138 CLTLSIANIIGFTKCRKDAKKQIQ 161 (183)
Q Consensus 138 ~~~l~~~Nl~gf~kC~~~~~~~~~ 161 (183)
++.--.+|+ |+||+++.++..+
T Consensus 45 ~~lt~ltN~--YFK~k~drr~~a~ 66 (68)
T PF04971_consen 45 GLLTYLTNL--YFKIKEDRRKAAR 66 (68)
T ss_pred HHHHHHhHh--hhhhhHhhhHhhc
Confidence 445556676 6899999888653
No 8
>PLN02248 cellulose synthase-like protein
Probab=33.21 E-value=4.9e+02 Score=27.83 Aligned_cols=26 Identities=12% Similarity=-0.022 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhHHHhhhccchhhhHH
Q 030089 134 VVGVCLTLSIANIIGFTKCRKDAKKQ 159 (183)
Q Consensus 134 l~~i~~~l~~~Nl~gf~kC~~~~~~~ 159 (183)
.-++.......|+|-|+|.--..+-+
T Consensus 1071 g~l~~s~Wvv~~lyPf~kGL~gR~gr 1096 (1135)
T PLN02248 1071 GGVFFSFWVLAHLYPFAKGLMGRRGR 1096 (1135)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 34455677889999999865444433
No 9
>PF08043 Xin: Xin repeat; InterPro: IPR012510 The repeat has the consensus sequence GDV(K/Q/R)(T/S/G)X(R/K/T) WLFETXPLD. This repeat motif is typically found in the N terminus of the proteins, with a copy number between 2 and 28 repeats. Direct evidence for binding to and stabilising F-actin has been found in the human protein (Q702N9 from SWISSPROT) []. The homologues in mouse and chicken localise in the adherens junction complex of the intercalated disc in cardiac muscle and in the myotendon junction of skeletal muscle. mXin may co-localise with Vinculin which is known to attach the actin to the cytoplasmic membrane []. It has been shown that the amino-terminus of human xin (CMYA1) binds the EVH1 domain of Mena/VASP/EVL, and the carboxy-terminus binds the, for the filamin family unique, domain 20 of filamin C []. This confirms the proposed role of xin repeat containing proteins as F-actin-binding adapter proteins.; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0030054 cell junction
Probab=32.49 E-value=30 Score=18.14 Aligned_cols=10 Identities=30% Similarity=0.644 Sum_probs=7.8
Q ss_pred ceeEEEEeec
Q 030089 81 ESVWKFECLD 90 (183)
Q Consensus 81 ~s~W~FEs~~ 90 (183)
...|.||+.+
T Consensus 5 ~~~wlFEtqp 14 (16)
T PF08043_consen 5 TTRWLFETQP 14 (16)
T ss_pred eeEEEeeccc
Confidence 4689999864
No 10
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=31.79 E-value=52 Score=22.80 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhhhhcccceeeeeeeeeeccCCCcee
Q 030089 48 TVLLAALDFWVVKNVSGRILVGLRWWNEINDMGESV 83 (183)
Q Consensus 48 ~ilLla~DFw~vKNItGR~LVGLRWwn~vd~dG~s~ 83 (183)
+.+++.+=++..||..| .++|+||--|
T Consensus 9 ~~~llg~~~l~i~~~~~---------syVd~~G~L~ 35 (63)
T PF13127_consen 9 ILLLLGVVCLFIFNIIG---------SYVDEDGVLH 35 (63)
T ss_pred HHHHHHHHHHHHHhccc---------ceECCCCeEe
Confidence 34557778899999998 6789999654
No 11
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=31.67 E-value=1.2e+02 Score=25.02 Aligned_cols=15 Identities=20% Similarity=0.142 Sum_probs=10.3
Q ss_pred CChHHHHHHHHHHHH
Q 030089 12 ANPKTCFFHVLFKGA 26 (183)
Q Consensus 12 ~HP~~~~fhl~fK~~ 26 (183)
+||+.|.--+..=++
T Consensus 34 ~HP~L~~~M~~~y~~ 48 (155)
T PF10777_consen 34 NHPYLCLAMYAAYLA 48 (155)
T ss_pred hCcHHHHHHHHHHHH
Confidence 899999765554444
No 12
>PF07330 DUF1467: Protein of unknown function (DUF1467); InterPro: IPR009935 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=23.98 E-value=1.8e+02 Score=21.36 Aligned_cols=32 Identities=16% Similarity=0.119 Sum_probs=26.1
Q ss_pred ccccCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 030089 93 SMARMNKKDSWLFWWTLYLSAVAWIVLGIFSL 124 (183)
Q Consensus 93 ~~~~~n~~ds~~FW~~l~~~p~~W~~~~i~~l 124 (183)
...+.|+.=.|-++.+.+++.++|.+......
T Consensus 41 ~sAP~~~~l~rk~~~TTiiaavi~~~~~~~~~ 72 (85)
T PF07330_consen 41 PSAPANPRLKRKALITTIIAAVIFAIIYLIIV 72 (85)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888999999999999999998866544
No 13
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=22.86 E-value=3.7e+02 Score=23.87 Aligned_cols=59 Identities=17% Similarity=0.286 Sum_probs=46.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHH------------HH------------------------hHHHHHHHHHHHHHH
Q 030089 99 KKDSWLFWWTLYLSAVAWIVLGIFSLI------------RF------------------------QADYLLVVGVCLTLS 142 (183)
Q Consensus 99 ~~ds~~FW~~l~~~p~~W~~~~i~~l~------------~l------------------------~~~wl~l~~i~~~l~ 142 (183)
-.|-.+=|.+.++...=|+-|++...+ +| .+.|-+++++|++|.
T Consensus 158 Gnd~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLikwilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll~ 237 (262)
T KOG4812|consen 158 GNDGIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIKWILIVRFSDDFESYFNGQYWLWWIFLVLGLLLF 237 (262)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhheeeEEeecccccccccccchHHHHHHHHHHHHHH
Confidence 347778899999988899998876543 22 344678999999999
Q ss_pred hhHHHhhhccchhhh
Q 030089 143 IANIIGFTKCRKDAK 157 (183)
Q Consensus 143 ~~Nl~gf~kC~~~~~ 157 (183)
.--+++|+|-+|-.+
T Consensus 238 lr~~i~YikVrrm~~ 252 (262)
T KOG4812|consen 238 LRGFINYIKVRRMEE 252 (262)
T ss_pred HHHHHhHHHHhhHHH
Confidence 999999999865433
No 14
>PF09951 DUF2185: Protein of unknown function (DUF2185); InterPro: IPR018689 This domain has no known function.
Probab=22.75 E-value=69 Score=23.65 Aligned_cols=36 Identities=28% Similarity=0.312 Sum_probs=24.8
Q ss_pred hhhhcc-cceeeeeeeeeeccCCCceeEEEEeecccc
Q 030089 58 VVKNVS-GRILVGLRWWNEINDMGESVWKFECLDHES 93 (183)
Q Consensus 58 ~vKNIt-GR~LVGLRWwn~vd~dG~s~W~FEs~~~~~ 93 (183)
++|||. ++.-||-=+--+...+.+|-|+|-|-++.+
T Consensus 3 vS~~i~~~~~~v~~~yRE~p~~~~DSGWrffsg~Etd 39 (89)
T PF09951_consen 3 VSKNILEEGEPVGYMYREEPEFPNDSGWRFFSGDETD 39 (89)
T ss_pred EehHHhhCCCceEEEEecCCCCCCCCceEEEecCCCH
Confidence 468887 666666555555555668899999987543
Done!