Query 030089
Match_columns 183
No_of_seqs 107 out of 246
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 13:17:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030089.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030089hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lx0_A Membrane fusion protein 22.7 79 0.0027 18.2 2.7 18 44-61 11-28 (32)
2 1pcf_A P15, transcriptional co 19.9 51 0.0017 22.2 1.8 24 58-82 12-35 (66)
3 3jsr_A ALL0216 protein; struct 13.9 16 0.00053 27.7 -2.2 11 53-63 39-49 (119)
4 3hts_B Heat shock transcriptio 9.8 63 0.0021 23.4 -0.0 17 142-158 68-84 (102)
5 3q0b_X Histone-lysine N-methyl 9.1 2.6E+02 0.0088 21.7 3.4 27 71-97 135-161 (167)
6 2le2_A P56; UDG inhibition, DN 9.1 2.1E+02 0.007 18.4 2.3 13 76-88 17-29 (56)
7 2p63_A Cell division control p 9.0 1.1E+02 0.0036 20.1 0.9 18 10-27 18-35 (56)
8 3no2_A Uncharacterized protein 7.0 1.8E+02 0.0062 22.9 1.7 18 74-91 247-264 (276)
9 1ug1_A KIAA1010 protein; struc 6.0 2E+02 0.0067 20.6 1.2 17 71-89 56-72 (92)
10 3j21_d 50S ribosomal protein L 6.0 2.1E+02 0.0072 20.2 1.3 21 146-167 67-87 (89)
No 1
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=22.67 E-value=79 Score=18.16 Aligned_cols=18 Identities=28% Similarity=0.563 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 030089 44 IFVVTVLLAALDFWVVKN 61 (183)
Q Consensus 44 ~Fv~~ilLla~DFw~vKN 61 (183)
..+..+..+++.||.-|-
T Consensus 11 glvalltflafgfwlfky 28 (32)
T 2lx0_A 11 GLVALLTFLAFGFWLFKY 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566778889998874
No 2
>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A
Probab=19.86 E-value=51 Score=22.18 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=18.7
Q ss_pred hhhhcccceeeeeeeeeeccCCCce
Q 030089 58 VVKNVSGRILVGLRWWNEINDMGES 82 (183)
Q Consensus 58 ~vKNItGR~LVGLRWwn~vd~dG~s 82 (183)
+|.+-.|+.+|.+|=|.+ +.||+.
T Consensus 12 tv~~fkG~~~VdIRe~Y~-~kdG~~ 35 (66)
T 1pcf_A 12 SVRDFKGKVLIDIREYWM-DPEGEM 35 (66)
T ss_dssp EEEEETTEEEEEEEEEEE-CTTSCE
T ss_pred EEEEeCCCEEEEEEEEEE-CCCCcC
Confidence 466778999999999886 557753
No 3
>3jsr_A ALL0216 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, NSR236, unknown funct; 1.80A {Nostoc SP} PDB: 3hze_A
Probab=13.93 E-value=16 Score=27.71 Aligned_cols=11 Identities=36% Similarity=1.008 Sum_probs=8.2
Q ss_pred HHHHHhhhhcc
Q 030089 53 ALDFWVVKNVS 63 (183)
Q Consensus 53 a~DFw~vKNIt 63 (183)
.+|||.|+|..
T Consensus 39 eiDFWlV~~Pa 49 (119)
T 3jsr_A 39 EIDFWLVPQPA 49 (119)
T ss_dssp CCCEEEEESBG
T ss_pred CccEEEecChh
Confidence 36888888874
No 4
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A
Probab=9.77 E-value=63 Score=23.37 Aligned_cols=17 Identities=18% Similarity=0.259 Sum_probs=9.9
Q ss_pred HhhHHHhhhccchhhhH
Q 030089 142 SIANIIGFTKCRKDAKK 158 (183)
Q Consensus 142 ~~~Nl~gf~kC~~~~~~ 158 (183)
--.|+|||.|+....+-
T Consensus 68 RQLN~YGF~Kv~~~~~g 84 (102)
T 3hts_B 68 RQLNMYGWHKVQDVKSG 84 (102)
T ss_dssp HHHHHTTEEECC-----
T ss_pred HHhhcCCceEeeccccC
Confidence 34599999999855433
No 5
>3q0b_X Histone-lysine N-methyltransferase, H3 lysine-9 S SUVH5; SRA, fully methylated CG, SUVH5, 5MC binding protein, fully methylated CG duplex DNA; HET: DNA 5CM; 2.20A {Arabidopsis thaliana} PDB: 3q0c_X* 3q0d_X* 3q0f_X*
Probab=9.10 E-value=2.6e+02 Score=21.73 Aligned_cols=27 Identities=22% Similarity=0.525 Sum_probs=21.4
Q ss_pred eeeeeccCCCceeEEEEeecccccccC
Q 030089 71 RWWNEINDMGESVWKFECLDHESMARM 97 (183)
Q Consensus 71 RWwn~vd~dG~s~W~FEs~~~~~~~~~ 97 (183)
+.|.|.+.+|...|+|.-+..+++.++
T Consensus 135 ~~w~e~g~~G~~v~kf~L~R~~gQp~l 161 (167)
T 3q0b_X 135 EYWEETGSHGKLVFKFKLRRIPGQPEL 161 (167)
T ss_dssp EEEEEECTTSCEEEEEEEEECTTSCCC
T ss_pred eeEEeeCCCCcEEEEEEEEEcCCCCCC
Confidence 578999999999999998876655333
No 6
>2le2_A P56; UDG inhibition, DNA mimicry, hydrolas inhibitor; NMR {Bacillus phage PHI29}
Probab=9.10 E-value=2.1e+02 Score=18.45 Aligned_cols=13 Identities=15% Similarity=0.434 Sum_probs=10.7
Q ss_pred ccCCCceeEEEEe
Q 030089 76 INDMGESVWKFEC 88 (183)
Q Consensus 76 vd~dG~s~W~FEs 88 (183)
.|+||.++|.+.-
T Consensus 17 ~dddg~q~~e~h~ 29 (56)
T 2le2_A 17 QDDDGKQYYEYHK 29 (56)
T ss_dssp ECTTSCEEEEEEE
T ss_pred EcCCCceeeeeec
Confidence 4899999998863
No 7
>2p63_A Cell division control protein 4; ubiquitination, helix bundle, SCF complex, cell cycle; 2.67A {Saccharomyces cerevisiae}
Probab=8.97 E-value=1.1e+02 Score=20.10 Aligned_cols=18 Identities=33% Similarity=0.480 Sum_probs=15.1
Q ss_pred CCCChHHHHHHHHHHHHH
Q 030089 10 NYANPKTCFFHVLFKGAA 27 (183)
Q Consensus 10 ~~~HP~~~~fhl~fK~~a 27 (183)
+..||-.|+=|++|+.++
T Consensus 18 ~~~lp~~~~knLiF~Lvs 35 (56)
T 2p63_A 18 NNNLPHAYFKNLLFRLVA 35 (56)
T ss_dssp GGGSCTTHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHH
Confidence 457899999999998875
No 8
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=7.01 E-value=1.8e+02 Score=22.91 Aligned_cols=18 Identities=28% Similarity=0.506 Sum_probs=15.4
Q ss_pred eeccCCCceeEEEEeecc
Q 030089 74 NEINDMGESVWKFECLDH 91 (183)
Q Consensus 74 n~vd~dG~s~W~FEs~~~ 91 (183)
.|+|.||+-.|.|+..++
T Consensus 247 ~~~~~~g~~~W~~~~~~~ 264 (276)
T 3no2_A 247 VEIDSEGKVVWQLNDKVK 264 (276)
T ss_dssp EEECTTSBEEEEECCTTT
T ss_pred EEECCCCCEEEEecCccc
Confidence 678999999999998754
No 9
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=6.02 E-value=2e+02 Score=20.64 Aligned_cols=17 Identities=18% Similarity=0.507 Sum_probs=11.5
Q ss_pred eeeeeccCCCceeEEEEee
Q 030089 71 RWWNEINDMGESVWKFECL 89 (183)
Q Consensus 71 RWwn~vd~dG~s~W~FEs~ 89 (183)
||| +|-+|.--|+.-+.
T Consensus 56 rW~--Vdtgg~~GyvPs~y 72 (92)
T 1ug1_A 56 RWL--IDNGVTKGFVYSSF 72 (92)
T ss_dssp EEE--EECSSSEEEEEGGG
T ss_pred ceE--EECCCcEEeeEhhh
Confidence 788 55678777776443
No 10
>3j21_d 50S ribosomal protein L34E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=5.96 E-value=2.1e+02 Score=20.24 Aligned_cols=21 Identities=10% Similarity=0.186 Sum_probs=16.0
Q ss_pred HHhhhccchhhhHHHHHHHHHH
Q 030089 146 IIGFTKCRKDAKKQIQQFASQT 167 (183)
Q Consensus 146 l~gf~kC~~~~~~~~~~~a~~~ 167 (183)
.|| ..|++--++.+..-+++.
T Consensus 67 aYG-~lC~~Cvr~rI~~~~r~~ 87 (89)
T 3j21_d 67 PMP-HLCPRCMRKVMKEQIRAQ 87 (89)
T ss_dssp SCT-TSCHHHHHHHHHHHHHHH
T ss_pred Ccc-cchHHHHHHHHHHHHHhh
Confidence 478 888888888887777754
Done!