Query 030089
Match_columns 183
No_of_seqs 107 out of 246
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 13:17:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030089.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030089hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pcfa_ d.18.1.1 (A:) Transcri 28.8 11 0.00079 23.9 1.5 23 58-81 12-34 (66)
2 d1jb0l_ f.31.1.1 (L:) Photosys 13.3 2E+02 0.014 20.5 5.8 45 134-178 83-132 (151)
3 d2f5va2 d.16.1.1 (A:355-552) P 7.2 1.4E+02 0.01 21.6 3.0 29 59-87 106-134 (198)
4 d2vo9a1 d.65.1.5 (A:1-148) L-a 6.9 75 0.0055 21.9 1.2 26 68-97 117-145 (148)
5 d1bdya_ b.7.1.1 (A:) Domain fr 6.4 43 0.0031 22.3 -0.5 21 55-75 103-123 (123)
6 d1lgha_ f.3.1.1 (A:) Light-har 6.3 1.4E+02 0.01 17.4 2.1 14 112-125 19-32 (56)
7 d1qvca_ b.40.4.3 (A:) ssDNA-bi 6.2 1.5E+02 0.011 19.9 2.6 24 62-89 79-102 (145)
8 d1nkta1 a.162.1.1 (A:226-349) 5.7 61 0.0044 22.2 0.1 12 61-72 94-105 (124)
9 d1mcvi_ g.3.2.1 (I:) Trypsin i 5.6 78 0.0057 16.4 0.5 10 148-157 5-14 (28)
10 d1wosa1 b.44.2.1 (A:279-361) G 5.5 90 0.0066 19.0 0.8 8 65-72 1-8 (83)
No 1
>d1pcfa_ d.18.1.1 (A:) Transcriptional coactivator PC4 C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.81 E-value=11 Score=23.95 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=18.5
Q ss_pred hhhhcccceeeeeeeeeeccCCCc
Q 030089 58 VVKNVSGRILVGLRWWNEINDMGE 81 (183)
Q Consensus 58 ~vKNItGR~LVGLRWwn~vd~dG~ 81 (183)
+|++--|+.+|.+|=|.. |.||+
T Consensus 12 tV~~FkG~~~vdIReyY~-dkdGe 34 (66)
T d1pcfa_ 12 SVRDFKGKVLIDIREYWM-DPEGE 34 (66)
T ss_dssp EEEEETTEEEEEEEEEEE-CTTSC
T ss_pred EEEEECCcEEEEEEEEEE-CCCCC
Confidence 467788999999999884 56785
No 2
>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]}
Probab=13.28 E-value=2e+02 Score=20.54 Aligned_cols=45 Identities=13% Similarity=0.228 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhHHHhhhccch-----hhhHHHHHHHHHHHHhhHHHHHHh
Q 030089 134 VVGVCLTLSIANIIGFTKCRK-----DAKKQIQQFASQTIASGFTSTLQS 178 (183)
Q Consensus 134 l~~i~~~l~~~Nl~gf~kC~~-----~~~~~~~~~a~~~~~~~~~~~~~~ 178 (183)
+.++.++|+.++..+|-+... ..++.-+++++.++.+.+-++...
T Consensus 83 v~Ilt~~L~lYg~~sf~~~~~~~d~l~t~~gWs~F~~GF~~Gg~GGa~fA 132 (151)
T d1jb0l_ 83 ILVATACLAAYGLVSFQKGGSSSDPLKTSEGWSQFTAGFFVGAMGSAFVA 132 (151)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCSSCGGGSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCCCCCcccccCcccHHHhhchhhhccccHHHHH
Confidence 446677889999999987654 344455588888887777766543
No 3
>d2f5va2 d.16.1.1 (A:355-552) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}
Probab=7.19 E-value=1.4e+02 Score=21.56 Aligned_cols=29 Identities=17% Similarity=0.391 Sum_probs=22.6
Q ss_pred hhhcccceeeeeeeeeeccCCCceeEEEE
Q 030089 59 VKNVSGRILVGLRWWNEINDMGESVWKFE 87 (183)
Q Consensus 59 vKNItGR~LVGLRWwn~vd~dG~s~W~FE 87 (183)
-|+..||..|+|||.-|+.++=++.-.+.
T Consensus 106 lk~~~~~~~v~l~~~ge~~P~~~Nrv~l~ 134 (198)
T d2f5va2 106 QQSIDSRLIVDWRFFGRTEPKEENKLWFS 134 (198)
T ss_dssp CCSSCGGGEEEEEEEECCCCCTTCEEEEE
T ss_pred ccccccCcEEEEEEEecccCCCCCEEEeC
Confidence 36788899999999999877665665554
No 4
>d2vo9a1 d.65.1.5 (A:1-148) L-alanyl-D-glutamate peptidase Ply {Listeria phage A500 [TaxId: 40522]}
Probab=6.95 E-value=75 Score=21.94 Aligned_cols=26 Identities=27% Similarity=0.581 Sum_probs=15.0
Q ss_pred eeeee---eeeccCCCceeEEEEeecccccccC
Q 030089 68 VGLRW---WNEINDMGESVWKFECLDHESMARM 97 (183)
Q Consensus 68 VGLRW---wn~vd~dG~s~W~FEs~~~~~~~~~ 97 (183)
.|+|| |... .| .|+||-++..++.++
T Consensus 117 ~Gf~WGG~w~~~-~D---~pHfel~~~~~g~~~ 145 (148)
T d2vo9a1 117 EGFKWGGDWKSF-KD---YPHFELCDAVSGEKI 145 (148)
T ss_dssp TTCEEGGGSSSS-CC---TTEEESSCGGGTCCC
T ss_pred cCCEEcccCCCC-CC---CCcEeccCccCCCCC
Confidence 57888 5321 23 479998765544333
No 5
>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.38 E-value=43 Score=22.31 Aligned_cols=21 Identities=19% Similarity=0.656 Sum_probs=16.1
Q ss_pred HHHhhhhcccceeeeeeeeee
Q 030089 55 DFWVVKNVSGRILVGLRWWNE 75 (183)
Q Consensus 55 DFw~vKNItGR~LVGLRWwn~ 75 (183)
|.|.-=..+||+++.+||+-|
T Consensus 103 ~~W~~L~~~Gkl~l~v~~f~e 123 (123)
T d1bdya_ 103 EFWLDLQPQAKVLMCVQYFLE 123 (123)
T ss_dssp EEEEECBSSCEEEEEEEEEEC
T ss_pred cEEEeCCCCEEEEEEEEEecC
Confidence 466655678999999999864
No 6
>d1lgha_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=6.32 E-value=1.4e+02 Score=17.45 Aligned_cols=14 Identities=29% Similarity=0.629 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHH
Q 030089 112 SAVAWIVLGIFSLI 125 (183)
Q Consensus 112 ~p~~W~~~~i~~l~ 125 (183)
.|++|++..++++.
T Consensus 19 lpviwivatvvaia 32 (56)
T d1lgha_ 19 LPVIWIVATVVAIA 32 (56)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHH
Confidence 47888888777653
No 7
>d1qvca_ b.40.4.3 (A:) ssDNA-binding protein {Escherichia coli [TaxId: 562]}
Probab=6.22 E-value=1.5e+02 Score=19.93 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=16.6
Q ss_pred cccceeeeeeeeeeccCCCceeEEEEee
Q 030089 62 VSGRILVGLRWWNEINDMGESVWKFECL 89 (183)
Q Consensus 62 ItGR~LVGLRWwn~vd~dG~s~W~FEs~ 89 (183)
|.||+ |.-...|+||+.+...|-.
T Consensus 79 V~G~l----~~~~~~~kdG~~r~~~ei~ 102 (145)
T d1qvca_ 79 IEGQL----RTRKWTDQSGQDRYTTEVV 102 (145)
T ss_dssp EEEEE----EEEEECSSSSCEEEEEEEE
T ss_pred EEEEE----EEeeeECCCCCEEEEEEEE
Confidence 55665 5555567899888777764
No 8
>d1nkta1 a.162.1.1 (A:226-349) Pre-protein crosslinking domain of SecA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=5.73 E-value=61 Score=22.21 Aligned_cols=12 Identities=42% Similarity=1.032 Sum_probs=10.8
Q ss_pred hcccceeeeeee
Q 030089 61 NVSGRILVGLRW 72 (183)
Q Consensus 61 NItGR~LVGLRW 72 (183)
.-|||.|-|-||
T Consensus 94 e~TGR~~~grr~ 105 (124)
T d1nkta1 94 EFTGRVLIGRRY 105 (124)
T ss_dssp SSSCCBCTTCCC
T ss_pred ccCCCcccCCCc
Confidence 469999999999
No 9
>d1mcvi_ g.3.2.1 (I:) Trypsin inhibitor {Jumping cucumber (Ecballium elaterium) [TaxId: 3679]}
Probab=5.61 E-value=78 Score=16.35 Aligned_cols=10 Identities=20% Similarity=0.946 Sum_probs=7.3
Q ss_pred hhhccchhhh
Q 030089 148 GFTKCRKDAK 157 (183)
Q Consensus 148 gf~kC~~~~~ 157 (183)
-|.||+++..
T Consensus 5 eym~c~~dsd 14 (28)
T d1mcvi_ 5 EYMRCKQDSD 14 (28)
T ss_dssp CCCBCSSGGG
T ss_pred hhhhcccccc
Confidence 4789988753
No 10
>d1wosa1 b.44.2.1 (A:279-361) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]}
Probab=5.52 E-value=90 Score=19.04 Aligned_cols=8 Identities=50% Similarity=0.592 Sum_probs=6.6
Q ss_pred ceeeeeee
Q 030089 65 RILVGLRW 72 (183)
Q Consensus 65 R~LVGLRW 72 (183)
|+||||+-
T Consensus 1 RrlvGl~i 8 (83)
T d1wosa1 1 RKLVALEL 8 (83)
T ss_dssp EEEEEEEE
T ss_pred CeEEEEEE
Confidence 68999976
Done!