Query 030090
Match_columns 183
No_of_seqs 141 out of 1282
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 08:21:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030090.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030090hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0014 MADS box transcription 100.0 1.1E-39 2.3E-44 254.0 5.0 163 1-163 1-191 (195)
2 cd00265 MADS_MEF2_like MEF2 (m 100.0 3.3E-36 7.1E-41 200.9 3.6 73 2-74 1-73 (77)
3 cd00266 MADS_SRF_like SRF-like 100.0 5.1E-33 1.1E-37 188.2 5.5 75 2-76 1-76 (83)
4 smart00432 MADS MADS domain. 100.0 2.9E-32 6.2E-37 172.1 4.3 59 2-60 1-59 (59)
5 cd00120 MADS MADS: MCM1, Agamo 100.0 1.2E-31 2.7E-36 169.3 3.6 59 2-60 1-59 (59)
6 PF00319 SRF-TF: SRF-type tran 100.0 4.4E-30 9.5E-35 157.1 0.3 51 9-59 1-51 (51)
7 KOG0015 Regulator of arginine 99.9 1.2E-22 2.5E-27 162.7 2.4 66 2-67 63-128 (338)
8 PF01486 K-box: K-box region; 99.8 1.2E-18 2.6E-23 122.1 12.1 89 83-171 11-99 (100)
9 COG5068 ARG80 Regulator of arg 99.6 1.1E-15 2.3E-20 127.8 2.9 68 1-68 81-148 (412)
10 PF06005 DUF904: Protein of un 95.7 0.17 3.8E-06 33.0 8.5 49 118-171 1-49 (72)
11 COG3074 Uncharacterized protei 90.5 3.3 7.1E-05 26.8 7.4 52 118-169 1-61 (79)
12 PRK15422 septal ring assembly 89.2 4.7 0.0001 26.7 8.3 41 118-163 1-41 (79)
13 cd07429 Cby_like Chibby, a nuc 88.6 1 2.2E-05 31.8 4.4 27 148-174 73-99 (108)
14 PF10584 Proteasome_A_N: Prote 88.4 0.077 1.7E-06 26.8 -0.9 13 43-55 3-15 (23)
15 PF07716 bZIP_2: Basic region 87.6 4.6 9.9E-05 24.5 6.7 39 134-176 16-54 (54)
16 PF06156 DUF972: Protein of un 87.5 6.8 0.00015 27.5 8.1 50 120-174 7-56 (107)
17 PRK13169 DNA replication intia 86.1 9.8 0.00021 26.9 8.5 49 120-173 7-55 (110)
18 PF06698 DUF1192: Protein of u 85.3 2.5 5.4E-05 26.5 4.4 31 109-139 12-42 (59)
19 PRK10884 SH3 domain-containing 84.9 17 0.00037 28.6 10.9 76 90-170 92-169 (206)
20 PF01166 TSC22: TSC-22/dip/bun 84.1 3.3 7.2E-05 25.8 4.5 28 143-170 17-44 (59)
21 TIGR02449 conserved hypothetic 82.7 10 0.00022 24.2 8.0 51 122-172 1-53 (65)
22 smart00338 BRLZ basic region l 80.0 12 0.00026 23.4 6.4 36 135-174 18-53 (65)
23 PRK04098 sec-independent trans 79.6 0.94 2E-05 34.1 1.1 27 43-71 15-41 (158)
24 PRK09343 prefoldin subunit bet 79.6 20 0.00043 25.6 10.6 53 129-182 68-120 (121)
25 TIGR02894 DNA_bind_RsfA transc 79.4 25 0.00053 26.6 11.8 58 115-172 77-136 (161)
26 PF08317 Spc7: Spc7 kinetochor 77.9 40 0.00088 28.2 12.2 60 113-172 201-262 (325)
27 smart00787 Spc7 Spc7 kinetocho 77.8 41 0.00088 28.2 11.8 62 113-174 196-259 (312)
28 PF00170 bZIP_1: bZIP transcri 74.5 18 0.00039 22.5 5.9 36 135-174 18-53 (64)
29 PF06005 DUF904: Protein of un 74.5 14 0.0003 24.0 5.4 32 141-172 12-43 (72)
30 PF10491 Nrf1_DNA-bind: NLS-bi 73.7 3.5 7.5E-05 32.4 2.8 46 26-71 35-87 (214)
31 KOG0250 DNA repair protein RAD 73.6 73 0.0016 31.2 11.8 18 44-61 621-638 (1074)
32 COG4467 Regulator of replicati 72.9 30 0.00065 24.4 7.3 48 120-172 7-54 (114)
33 TIGR02338 gimC_beta prefoldin, 72.9 29 0.00063 24.2 10.3 46 127-173 62-107 (110)
34 COG2433 Uncharacterized conser 72.0 82 0.0018 29.0 11.7 54 121-174 450-508 (652)
35 PF07106 TBPIP: Tat binding pr 71.5 30 0.00065 26.0 7.5 24 118-141 142-165 (169)
36 KOG4797 Transcriptional regula 70.8 34 0.00074 24.1 6.9 29 142-170 69-97 (123)
37 PRK10884 SH3 domain-containing 69.8 49 0.0011 26.0 8.5 17 95-111 90-106 (206)
38 PF06156 DUF972: Protein of un 69.0 37 0.0008 23.8 7.9 34 141-174 16-49 (107)
39 PHA03155 hypothetical protein; 67.6 42 0.0009 23.9 8.5 59 85-143 9-67 (115)
40 PF10079 DUF2317: Uncharacteri 67.5 36 0.00079 30.8 8.3 63 121-183 440-503 (542)
41 cd00187 TOP4c DNA Topoisomeras 66.8 70 0.0015 28.3 9.7 60 7-72 257-327 (445)
42 PF14645 Chibby: Chibby family 66.2 12 0.00026 26.7 4.0 25 148-172 72-96 (116)
43 PF09789 DUF2353: Uncharacteri 64.2 88 0.0019 26.4 11.1 85 93-181 32-120 (319)
44 PF13870 DUF4201: Domain of un 63.6 62 0.0013 24.4 12.6 78 92-172 14-102 (177)
45 PRK00888 ftsB cell division pr 62.9 31 0.00068 24.0 5.7 28 145-172 32-59 (105)
46 PF05812 Herpes_BLRF2: Herpesv 61.7 57 0.0012 23.4 8.2 55 89-143 8-66 (118)
47 PF11365 DUF3166: Protein of u 60.7 32 0.00069 23.7 5.2 35 140-174 8-42 (96)
48 PF04880 NUDE_C: NUDE protein, 60.0 22 0.00048 27.0 4.7 46 123-170 2-47 (166)
49 PF04977 DivIC: Septum formati 58.4 44 0.00096 21.2 5.6 30 144-173 21-50 (80)
50 smart00340 HALZ homeobox assoc 58.2 33 0.00071 19.9 4.1 30 149-178 7-36 (44)
51 KOG1962 B-cell receptor-associ 56.4 1E+02 0.0022 24.5 8.1 54 118-171 155-210 (216)
52 PF09941 DUF2173: Uncharacteri 54.8 18 0.00038 25.6 3.2 37 32-69 3-42 (108)
53 PF10504 DUF2452: Protein of u 54.4 92 0.002 23.5 8.4 45 119-163 28-75 (159)
54 KOG0971 Microtubule-associated 54.2 2.2E+02 0.0047 27.9 10.8 48 92-139 333-389 (1243)
55 COG4365 Uncharacterized protei 54.0 20 0.00044 31.4 4.0 44 140-183 455-499 (537)
56 PF15066 CAGE1: Cancer-associa 54.0 1.3E+02 0.0029 26.7 9.0 15 33-47 254-268 (527)
57 PF10226 DUF2216: Uncharacteri 53.9 59 0.0013 25.3 6.1 32 139-170 47-78 (195)
58 PF02183 HALZ: Homeobox associ 52.7 46 0.00099 19.5 5.8 35 140-174 5-39 (45)
59 PRK15422 septal ring assembly 52.1 68 0.0015 21.3 5.7 29 141-169 12-40 (79)
60 COG0139 HisI Phosphoribosyl-AM 51.4 5.2 0.00011 28.2 0.1 38 17-54 50-96 (111)
61 PRK13169 DNA replication intia 51.3 85 0.0018 22.2 7.8 35 140-174 15-49 (110)
62 PF03980 Nnf1: Nnf1 ; InterPr 49.9 77 0.0017 21.8 6.0 48 113-173 59-106 (109)
63 KOG4797 Transcriptional regula 49.7 90 0.002 22.0 7.6 45 129-173 49-93 (123)
64 PF06785 UPF0242: Uncharacteri 49.2 1.7E+02 0.0037 25.0 8.7 45 127-172 129-173 (401)
65 COG4917 EutP Ethanolamine util 48.9 14 0.0003 27.1 2.0 24 35-58 59-82 (148)
66 TIGR00606 rad50 rad50. This fa 48.6 3E+02 0.0066 27.8 12.5 62 117-178 821-888 (1311)
67 PHA03162 hypothetical protein; 48.4 1.1E+02 0.0023 22.4 8.3 55 89-143 18-76 (135)
68 KOG4643 Uncharacterized coiled 47.7 1.3E+02 0.0028 29.6 8.4 49 127-175 280-329 (1195)
69 TIGR03545 conserved hypothetic 47.6 1.5E+02 0.0032 27.1 8.7 51 89-141 180-232 (555)
70 PHA02592 52 DNA topisomerase I 47.1 2E+02 0.0044 25.4 11.5 28 42-71 298-325 (439)
71 PF08432 Vfa1: AAA-ATPase Vps4 47.0 82 0.0018 24.1 6.2 15 38-52 10-24 (182)
72 COG3074 Uncharacterized protei 46.6 79 0.0017 20.5 5.5 27 144-170 15-41 (79)
73 PF14009 DUF4228: Domain of un 46.5 19 0.00041 26.6 2.6 34 39-72 12-46 (181)
74 cd04769 HTH_MerR2 Helix-Turn-H 46.1 87 0.0019 21.8 5.8 14 117-130 56-69 (116)
75 KOG0183 20S proteasome, regula 45.5 12 0.00025 29.8 1.2 18 41-58 4-23 (249)
76 PF15397 DUF4618: Domain of un 45.5 1.7E+02 0.0037 24.0 8.2 36 139-174 185-220 (258)
77 PRK04863 mukB cell division pr 45.4 3.7E+02 0.008 27.8 12.2 67 112-178 1047-1120(1486)
78 KOG0184 20S proteasome, regula 45.2 12 0.00025 29.9 1.2 24 36-59 3-28 (254)
79 PF13874 Nup54: Nucleoporin co 44.9 96 0.0021 22.6 6.0 47 128-174 68-120 (141)
80 PF07888 CALCOCO1: Calcium bin 44.9 2.5E+02 0.0053 25.7 12.4 30 30-60 77-113 (546)
81 TIGR02209 ftsL_broad cell divi 44.7 85 0.0018 20.3 5.4 30 144-173 28-57 (85)
82 KOG4637 Adaptor for phosphoino 44.4 20 0.00043 30.9 2.5 41 33-73 367-412 (464)
83 COG4477 EzrA Negative regulato 44.0 2.5E+02 0.0055 25.5 11.6 62 114-176 371-432 (570)
84 TIGR02449 conserved hypothetic 43.8 85 0.0018 20.0 5.2 26 146-171 20-45 (65)
85 PHA03162 hypothetical protein; 43.5 44 0.00096 24.4 3.8 24 149-172 15-38 (135)
86 PF04999 FtsL: Cell division p 43.1 94 0.002 20.8 5.4 32 142-173 37-68 (97)
87 COG1382 GimC Prefoldin, chaper 42.6 1.3E+02 0.0027 21.7 13.1 52 129-181 67-118 (119)
88 TIGR03752 conj_TIGR03752 integ 42.3 2.5E+02 0.0055 25.1 10.8 70 90-172 72-141 (472)
89 PF09388 SpoOE-like: Spo0E lik 41.2 64 0.0014 18.6 3.7 40 96-137 2-41 (45)
90 PHA03155 hypothetical protein; 40.5 53 0.0011 23.4 3.8 24 149-172 10-33 (115)
91 PF02996 Prefoldin: Prefoldin 40.0 1.2E+02 0.0027 20.8 6.8 46 130-176 75-120 (120)
92 cd01109 HTH_YyaN Helix-Turn-He 40.0 1.2E+02 0.0027 20.9 6.6 53 117-170 57-109 (113)
93 PF01502 PRA-CH: Phosphoribosy 39.9 5.6 0.00012 26.2 -1.1 37 17-53 18-63 (75)
94 COG5000 NtrY Signal transducti 39.7 24 0.00052 32.5 2.4 22 36-57 374-395 (712)
95 PF07926 TPR_MLP1_2: TPR/MLP1/ 39.6 1.4E+02 0.0031 21.4 10.8 31 143-173 101-131 (132)
96 PRK13729 conjugal transfer pil 39.3 2.1E+02 0.0046 25.5 8.1 29 144-172 94-122 (475)
97 COG4575 ElaB Uncharacterized c 38.9 1.4E+02 0.0029 21.0 5.6 30 115-144 31-60 (104)
98 PF14915 CCDC144C: CCDC144C pr 38.8 2.3E+02 0.0051 23.7 8.2 51 120-171 30-80 (305)
99 PF11802 CENP-K: Centromere-as 37.9 2.3E+02 0.005 23.3 10.2 54 90-143 58-114 (268)
100 PF11629 Mst1_SARAH: C termina 37.7 60 0.0013 19.5 3.2 18 115-132 5-22 (49)
101 TIGR01916 F420_cofE F420-0:gam 37.5 30 0.00065 28.0 2.5 35 33-67 133-174 (243)
102 PF04849 HAP1_N: HAP1 N-termin 37.3 59 0.0013 27.3 4.2 26 148-173 161-186 (306)
103 PRK13923 putative spore coat p 37.3 1.5E+02 0.0032 22.7 6.0 9 115-123 100-108 (170)
104 PF09151 DUF1936: Domain of un 37.0 30 0.00065 18.7 1.6 23 34-56 2-24 (36)
105 PF10623 PilI: Plasmid conjuga 36.6 42 0.0009 22.3 2.6 31 42-72 8-41 (83)
106 cd01106 HTH_TipAL-Mta Helix-Tu 36.2 1.4E+02 0.003 20.3 6.1 40 117-156 57-96 (103)
107 PF07558 Shugoshin_N: Shugoshi 35.3 59 0.0013 19.1 2.9 32 140-171 14-45 (46)
108 PF09278 MerR-DNA-bind: MerR, 35.3 1.1E+02 0.0023 18.7 6.6 11 117-127 14-24 (65)
109 PRK14127 cell division protein 34.8 1.4E+02 0.003 21.1 5.2 51 113-171 18-68 (109)
110 KOG0963 Transcription factor/C 34.3 3.8E+02 0.0083 24.8 9.5 82 93-174 123-209 (629)
111 smart00338 BRLZ basic region l 34.3 1.1E+02 0.0025 18.8 5.1 27 144-170 37-63 (65)
112 PRK13293 F420-0--gamma-glutamy 34.2 38 0.00082 27.5 2.6 27 33-59 134-160 (245)
113 PF14263 DUF4354: Domain of un 33.7 12 0.00027 27.0 -0.3 41 11-56 41-81 (124)
114 COG1422 Predicted membrane pro 33.5 2.1E+02 0.0046 22.5 6.5 47 91-152 72-118 (201)
115 PF09798 LCD1: DNA damage chec 33.2 3.3E+02 0.0071 25.5 8.6 51 122-172 5-58 (654)
116 PF11853 DUF3373: Protein of u 32.9 40 0.00087 30.1 2.7 33 146-178 30-62 (489)
117 PF05529 Bap31: B-cell recepto 32.9 2.2E+02 0.0048 21.6 8.2 32 142-173 156-187 (192)
118 cd02980 TRX_Fd_family Thioredo 32.5 52 0.0011 20.7 2.6 29 39-68 47-76 (77)
119 PF14357 DUF4404: Domain of un 32.3 84 0.0018 20.9 3.7 39 96-136 2-40 (85)
120 PF11232 Med25: Mediator compl 32.2 50 0.0011 24.7 2.8 23 37-59 109-132 (152)
121 TIGR01950 SoxR redox-sensitive 32.1 1.4E+02 0.003 21.8 5.2 55 117-171 57-111 (142)
122 KOG0709 CREB/ATF family transc 32.0 48 0.001 29.3 3.0 24 150-173 289-312 (472)
123 PRK10265 chaperone-modulator p 31.9 66 0.0014 22.1 3.2 77 32-110 10-97 (101)
124 KOG3119 Basic region leucine z 31.8 2.8E+02 0.0061 22.6 7.4 45 126-174 198-242 (269)
125 PF07889 DUF1664: Protein of u 31.3 2E+02 0.0044 20.8 7.9 20 119-138 76-95 (126)
126 PF08781 DP: Transcription fac 31.2 2.2E+02 0.0048 21.1 7.9 45 122-168 2-46 (142)
127 PF07676 PD40: WD40-like Beta 31.2 37 0.00081 18.4 1.6 19 41-59 9-27 (39)
128 PF08172 CASP_C: CASP C termin 31.1 1.9E+02 0.0042 23.4 6.2 33 146-178 106-138 (248)
129 PF04899 MbeD_MobD: MbeD/MobD 31.0 1.5E+02 0.0033 19.1 8.1 49 126-174 4-55 (70)
130 cd08888 SRPBCC_PITPNA-B_like L 31.0 65 0.0014 26.3 3.4 26 113-138 232-257 (258)
131 PF05325 DUF730: Protein of un 30.9 32 0.0007 23.7 1.4 20 36-55 20-44 (122)
132 COG4831 Roadblock/LC7 domain [ 30.7 55 0.0012 22.6 2.5 29 30-59 3-31 (109)
133 PF10211 Ax_dynein_light: Axon 30.5 2.5E+02 0.0055 21.6 8.7 11 159-169 175-185 (189)
134 cd00632 Prefoldin_beta Prefold 30.4 1.8E+02 0.0039 19.8 6.9 44 129-173 60-103 (105)
135 COG0216 PrfA Protein chain rel 30.0 3.6E+02 0.0077 23.2 8.6 16 60-75 7-22 (363)
136 cd01110 HTH_SoxR Helix-Turn-He 29.8 2.2E+02 0.0047 20.6 6.2 55 117-171 57-111 (139)
137 PF04508 Pox_A_type_inc: Viral 29.6 78 0.0017 15.9 2.3 15 93-107 3-17 (23)
138 PRK11637 AmiB activator; Provi 29.5 3.8E+02 0.0081 23.2 12.6 49 122-170 76-126 (428)
139 TIGR01478 STEVOR variant surfa 29.3 2.2E+02 0.0048 23.7 6.2 44 7-71 25-69 (295)
140 KOG4643 Uncharacterized coiled 29.3 2E+02 0.0044 28.3 6.7 35 140-174 308-342 (1195)
141 PLN03194 putative disease resi 29.3 44 0.00095 25.9 2.1 30 39-68 79-108 (187)
142 PF04120 Iron_permease: Low af 29.0 2.3E+02 0.005 20.7 5.9 45 96-140 71-117 (132)
143 PF06785 UPF0242: Uncharacteri 28.8 3.7E+02 0.0081 23.0 11.0 53 120-173 101-153 (401)
144 cd04787 HTH_HMRTR_unk Helix-Tu 28.8 2.2E+02 0.0048 20.3 6.8 55 117-172 57-111 (133)
145 PF02824 TGS: TGS domain; Int 28.7 54 0.0012 20.1 2.1 25 45-69 1-26 (60)
146 KOG4252 GTP-binding protein [S 28.7 33 0.00071 26.8 1.3 27 39-71 91-117 (246)
147 PLN03237 DNA topoisomerase 2; 28.7 1.6E+02 0.0034 30.2 6.2 45 91-135 1126-1170(1465)
148 cd04790 HTH_Cfa-like_unk Helix 28.7 2.3E+02 0.0049 21.4 6.0 11 118-128 59-69 (172)
149 PRK15002 redox-sensitivie tran 27.9 2E+02 0.0044 21.4 5.5 13 117-129 67-79 (154)
150 PF14282 FlxA: FlxA-like prote 27.6 2.1E+02 0.0046 19.8 9.1 39 90-130 18-56 (106)
151 KOG2129 Uncharacterized conser 27.3 4.4E+02 0.0096 23.3 9.9 50 115-171 176-225 (552)
152 PF06574 FAD_syn: FAD syntheta 27.3 1.5E+02 0.0032 22.1 4.6 26 26-51 22-47 (157)
153 KOG0241 Kinesin-like protein [ 27.2 6.4E+02 0.014 25.2 10.5 65 93-173 366-430 (1714)
154 PF06937 EURL: EURL protein; 27.2 3.6E+02 0.0078 22.3 7.4 31 109-139 210-240 (285)
155 COG1422 Predicted membrane pro 27.1 3.1E+02 0.0068 21.5 7.2 49 120-168 71-119 (201)
156 PF04849 HAP1_N: HAP1 N-termin 27.0 3.8E+02 0.0083 22.5 8.4 28 145-172 239-266 (306)
157 KOG4005 Transcription factor X 27.0 3.5E+02 0.0075 22.0 7.7 28 144-171 108-135 (292)
158 KOG0804 Cytoplasmic Zn-finger 26.8 4.6E+02 0.01 23.4 9.8 34 134-167 376-409 (493)
159 cd04776 HTH_GnyR Helix-Turn-He 26.8 2.3E+02 0.0049 19.9 7.0 56 117-172 55-112 (118)
160 TIGR02051 MerR Hg(II)-responsi 26.8 2.3E+02 0.005 19.9 6.4 52 117-171 56-107 (124)
161 PF14662 CCDC155: Coiled-coil 26.7 3.1E+02 0.0067 21.4 8.0 52 120-172 69-120 (193)
162 PF15188 CCDC-167: Coiled-coil 26.7 2E+02 0.0044 19.3 6.8 36 117-164 32-67 (85)
163 cd01668 TGS_RelA_SpoT TGS_RelA 26.6 60 0.0013 19.1 2.1 25 45-69 1-26 (60)
164 PF10224 DUF2205: Predicted co 26.6 2E+02 0.0043 19.1 7.4 28 147-174 37-64 (80)
165 PF03785 Peptidase_C25_C: Pept 26.5 23 0.00049 23.6 0.1 24 32-55 16-39 (81)
166 PF04566 RNA_pol_Rpb2_4: RNA p 26.5 18 0.00039 22.8 -0.4 30 23-54 24-54 (63)
167 cd01107 HTH_BmrR Helix-Turn-He 26.3 2.2E+02 0.0047 19.5 6.4 46 117-168 58-103 (108)
168 KOG3612 PHD Zn-finger protein 26.0 5.1E+02 0.011 23.7 8.4 71 35-109 404-478 (588)
169 PF04945 YHS: YHS domain; Int 26.0 56 0.0012 18.9 1.8 28 39-66 6-36 (47)
170 PF09158 MotCF: Bacteriophage 25.9 25 0.00054 24.5 0.2 53 5-72 19-72 (103)
171 PF07407 Seadorna_VP6: Seadorn 25.8 2.5E+02 0.0054 24.0 6.0 47 112-172 23-69 (420)
172 KOG0182 20S proteasome, regula 25.7 43 0.00094 26.6 1.5 19 38-56 6-24 (246)
173 PF10662 PduV-EutP: Ethanolami 25.5 64 0.0014 23.9 2.3 25 35-59 58-82 (143)
174 KOG3584 cAMP response element 25.4 1.7E+02 0.0038 24.4 5.0 36 135-174 304-339 (348)
175 COG5068 ARG80 Regulator of arg 25.2 44 0.00095 29.1 1.6 58 8-71 18-76 (412)
176 COG1579 Zn-ribbon protein, pos 25.2 3.7E+02 0.008 21.7 10.3 21 118-138 86-106 (239)
177 KOG4311 Histidinol dehydrogena 25.1 96 0.0021 25.7 3.4 57 15-71 180-257 (359)
178 PTZ00108 DNA topoisomerase 2-l 25.0 1.4E+02 0.0031 30.4 5.1 45 91-135 1102-1146(1388)
179 PRK09514 zntR zinc-responsive 24.9 2.7E+02 0.0059 20.1 5.7 54 117-170 58-111 (140)
180 PF02887 PK_C: Pyruvate kinase 24.9 57 0.0012 22.7 1.9 22 31-53 7-28 (117)
181 PF04873 EIN3: Ethylene insens 24.8 24 0.00053 30.1 0.0 42 22-63 50-92 (354)
182 COG4888 Uncharacterized Zn rib 24.4 32 0.00069 23.9 0.5 48 1-58 1-59 (104)
183 PRK09555 feoA ferrous iron tra 24.3 93 0.002 20.1 2.7 33 26-58 20-52 (74)
184 PRK13848 conjugal transfer pro 24.0 2.2E+02 0.0049 19.5 4.5 48 91-139 10-62 (98)
185 cd04788 HTH_NolA-AlbR Helix-Tu 24.0 2E+02 0.0043 19.3 4.5 13 117-129 57-69 (96)
186 PF01093 Clusterin: Clusterin; 23.6 3.7E+02 0.008 23.8 7.0 11 127-137 15-25 (436)
187 cd04768 HTH_BmrR-like Helix-Tu 23.5 2.4E+02 0.0051 18.9 4.8 13 117-129 57-69 (96)
188 PF14662 CCDC155: Coiled-coil 23.4 3.6E+02 0.0079 21.0 8.3 28 145-172 114-141 (193)
189 PRK09822 lipopolysaccharide co 23.3 38 0.00082 27.4 0.8 39 20-59 118-160 (269)
190 KOG1842 FYVE finger-containing 23.1 2.8E+02 0.0062 24.6 6.0 46 126-171 453-498 (505)
191 COG4467 Regulator of replicati 23.1 2.8E+02 0.0061 19.6 7.6 31 144-174 19-49 (114)
192 PF13252 DUF4043: Protein of u 23.1 42 0.00091 28.5 1.1 29 31-59 270-300 (341)
193 PF00383 dCMP_cyt_deam_1: Cyti 23.1 81 0.0018 21.0 2.4 27 28-54 7-37 (102)
194 PF14775 NYD-SP28_assoc: Sperm 23.0 2E+02 0.0043 17.8 5.5 28 144-172 31-58 (60)
195 PRK03918 chromosome segregatio 22.8 6.6E+02 0.014 23.8 9.7 14 119-132 657-670 (880)
196 TIGR00012 L29 ribosomal protei 22.7 1.8E+02 0.0039 17.5 3.6 25 115-139 2-26 (55)
197 KOG1560 Translation initiation 22.6 2.3E+02 0.0049 23.6 5.1 52 127-178 215-266 (339)
198 cd04770 HTH_HMRTR Helix-Turn-H 22.5 2.8E+02 0.006 19.3 7.2 51 117-168 57-107 (123)
199 PF13540 RCC1_2: Regulator of 22.5 38 0.00083 17.6 0.5 23 36-59 3-25 (30)
200 COG3938 Proline racemase [Amin 22.4 78 0.0017 26.6 2.5 27 40-66 74-102 (341)
201 cd03064 TRX_Fd_NuoE TRX-like [ 22.3 90 0.0019 20.0 2.4 28 39-69 52-80 (80)
202 PF10211 Ax_dynein_light: Axon 22.2 3.7E+02 0.008 20.7 7.8 15 145-159 168-182 (189)
203 cd04784 HTH_CadR-PbrR Helix-Tu 22.1 2.9E+02 0.0063 19.4 7.1 53 117-170 57-109 (127)
204 cd01365 KISc_KIF1A_KIF1B Kines 21.9 77 0.0017 26.8 2.5 24 36-59 83-109 (356)
205 PF11460 DUF3007: Protein of u 21.9 52 0.0011 23.0 1.2 18 114-131 86-103 (104)
206 KOG4451 Uncharacterized conser 21.8 4.4E+02 0.0094 21.3 7.7 55 120-179 70-124 (286)
207 PLN03128 DNA topoisomerase 2; 21.6 71 0.0015 31.7 2.4 40 91-130 1095-1134(1135)
208 cd03063 TRX_Fd_FDH_beta TRX-li 21.6 1.3E+02 0.0029 20.4 3.1 35 38-72 44-80 (92)
209 KOG4673 Transcription factor T 21.5 7.1E+02 0.015 23.7 9.7 32 139-170 604-635 (961)
210 cd04777 HTH_MerR-like_sg1 Heli 21.3 2.7E+02 0.006 18.9 5.5 12 117-128 55-66 (107)
211 PF10337 DUF2422: Protein of u 21.2 4.6E+02 0.01 22.9 7.3 45 91-135 262-307 (459)
212 cd00106 KISc Kinesin motor dom 21.2 84 0.0018 26.0 2.6 23 37-59 74-99 (328)
213 PF13758 Prefoldin_3: Prefoldi 21.2 2.9E+02 0.0064 19.1 6.1 16 88-103 9-24 (99)
214 cd01854 YjeQ_engC YjeQ/EngC. 20.8 55 0.0012 26.8 1.3 41 10-54 52-92 (287)
215 PF12018 DUF3508: Domain of un 20.7 50 0.0011 27.2 1.0 32 19-60 210-241 (281)
216 KOG0977 Nuclear envelope prote 20.7 3.9E+02 0.0085 24.4 6.7 49 135-183 36-86 (546)
217 PF11594 Med28: Mediator compl 20.6 3.1E+02 0.0068 19.2 4.9 12 139-150 52-63 (106)
218 KOG4571 Activating transcripti 20.4 4.9E+02 0.011 21.7 6.6 42 133-174 238-282 (294)
219 cd04783 HTH_MerR1 Helix-Turn-H 20.3 3.2E+02 0.0069 19.2 6.4 50 118-170 58-107 (126)
220 cd03750 proteasome_alpha_type_ 20.2 40 0.00086 26.5 0.4 16 44-59 4-21 (227)
221 cd04786 HTH_MerR-like_sg7 Heli 20.2 3.4E+02 0.0073 19.5 6.1 29 144-172 82-110 (131)
222 PF13188 PAS_8: PAS domain; PD 20.2 98 0.0021 18.4 2.1 29 37-67 6-34 (64)
223 PHA02109 hypothetical protein 20.2 3.7E+02 0.008 20.8 5.5 42 109-162 179-222 (233)
224 PF04521 Viral_P18: ssRNA posi 20.1 2.5E+02 0.0055 20.1 4.4 22 18-39 4-25 (120)
225 KOG0930 Guanine nucleotide exc 20.0 2.8E+02 0.0061 23.2 5.2 42 116-166 9-50 (395)
No 1
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=100.00 E-value=1.1e-39 Score=253.97 Aligned_cols=163 Identities=42% Similarity=0.589 Sum_probs=127.3
Q ss_pred CCccccceeeecCCcccccccccccchhhhhHHhhhhhcCcceEEEEecCCCcccccCcch--hHHHHHHhhhcccCccc
Q 030090 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSS--MKDIIARYNMHSSNISK 78 (183)
Q Consensus 1 mgR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKA~ELs~LCd~~vavivfs~~gk~~~~~s~~--v~~vl~RY~~~~~~~~~ 78 (183)
|||+||+|++|+|.++|+|||+|||+||||||+||||||||+||||||||+|++|+|++++ |.+|++||...+.....
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK 80 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999998865 99999999886554322
Q ss_pred CCCCchHHH---------------------hhHHHHHHhHHHHHHHH---HHHHhhcCCCCCCCCH-HHHHHHHHHHHHH
Q 030090 79 LNHPSLELQ---------------------LENSKYLSLSREIADKS---RQLRQMRGEDLHGLTI-EELQHLETMLEQG 133 (183)
Q Consensus 79 ~~~~~~~~q---------------------~~~~~~~~Lk~eie~l~---~~lr~~~ge~l~~Ls~-~eL~~Le~~Le~~ 133 (183)
......... ........+....+.+. ...+++.|+++.+++. .+|..++.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~ 160 (195)
T KOG0014|consen 81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS 160 (195)
T ss_pred ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence 111111110 01122333444444443 3367888999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 030090 134 LSRVLQTKGDRIMNEIS-TLERKGAKLLEEN 163 (183)
Q Consensus 134 L~~IR~rK~~ll~~~i~-~l~~k~~~l~~~n 163 (183)
+..++..+...+.+++. .++.++..+.+.|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (195)
T KOG0014|consen 161 LHNSRSSKSKPLSDSNFQVLQEKEKSLEAEN 191 (195)
T ss_pred hcCCCCCCCcCCcchhhhhhcccchhccccC
Confidence 99999999988888776 5555555554433
No 2
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=100.00 E-value=3.3e-36 Score=200.93 Aligned_cols=73 Identities=66% Similarity=0.958 Sum_probs=71.1
Q ss_pred CccccceeeecCCcccccccccccchhhhhHHhhhhhcCcceEEEEecCCCcccccCcchhHHHHHHhhhccc
Q 030090 2 AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSS 74 (183)
Q Consensus 2 gR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKA~ELs~LCd~~vavivfs~~gk~~~~~s~~v~~vl~RY~~~~~ 74 (183)
||+||+|++|+|+.+|++||+||++||||||+||||||||+||+|||||+|++|+|+||++++||+||...+.
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~~ 73 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTSG 73 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999998764
No 3
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.98 E-value=5.1e-33 Score=188.18 Aligned_cols=75 Identities=53% Similarity=0.819 Sum_probs=70.4
Q ss_pred CccccceeeecCCcccccccccccchhhhhHHhhhhhcCcceEEEEecCCCcccccCcch-hHHHHHHhhhcccCc
Q 030090 2 AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSS-MKDIIARYNMHSSNI 76 (183)
Q Consensus 2 gR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKA~ELs~LCd~~vavivfs~~gk~~~~~s~~-v~~vl~RY~~~~~~~ 76 (183)
||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|++|+|++++ +..++++|...+...
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~~ 76 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSALE 76 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHhh
Confidence 899999999999999999999999999999999999999999999999999999987754 999999999876543
No 4
>smart00432 MADS MADS domain.
Probab=99.97 E-value=2.9e-32 Score=172.07 Aligned_cols=59 Identities=69% Similarity=1.037 Sum_probs=57.7
Q ss_pred CccccceeeecCCcccccccccccchhhhhHHhhhhhcCcceEEEEecCCCcccccCcc
Q 030090 2 AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60 (183)
Q Consensus 2 gR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKA~ELs~LCd~~vavivfs~~gk~~~~~s~ 60 (183)
||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|++|+|++|
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p 59 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence 89999999999999999999999999999999999999999999999999999998875
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.97 E-value=1.2e-31 Score=169.29 Aligned_cols=59 Identities=71% Similarity=1.026 Sum_probs=57.5
Q ss_pred CccccceeeecCCcccccccccccchhhhhHHhhhhhcCcceEEEEecCCCcccccCcc
Q 030090 2 AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60 (183)
Q Consensus 2 gR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKA~ELs~LCd~~vavivfs~~gk~~~~~s~ 60 (183)
||+||+|++|+|+..|++||+||+.||||||+||||||||+||+|||||+|++|+|++|
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~ 59 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence 89999999999999999999999999999999999999999999999999999998874
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.95 E-value=4.4e-30 Score=157.07 Aligned_cols=51 Identities=55% Similarity=0.947 Sum_probs=47.1
Q ss_pred eeecCCcccccccccccchhhhhHHhhhhhcCcceEEEEecCCCcccccCc
Q 030090 9 RKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSS 59 (183)
Q Consensus 9 k~Ien~~~R~~Tf~KRr~GL~KKA~ELs~LCd~~vavivfs~~gk~~~~~s 59 (183)
|+|+|++.|++||+||+.||||||+||||||||+||+|||||+|++|+|||
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence 689999999999999999999999999999999999999999999999987
No 7
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.85 E-value=1.2e-22 Score=162.67 Aligned_cols=66 Identities=39% Similarity=0.587 Sum_probs=62.3
Q ss_pred CccccceeeecCCcccccccccccchhhhhHHhhhhhcCcceEEEEecCCCcccccCcchhHHHHH
Q 030090 2 AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIA 67 (183)
Q Consensus 2 gR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKA~ELs~LCd~~vavivfs~~gk~~~~~s~~v~~vl~ 67 (183)
||+||+|+||||+..|+|||||||.||||||+|||||+|.+|-|+|.|.+|-+|+|+.|.++.||.
T Consensus 63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~ 128 (338)
T KOG0015|consen 63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMIT 128 (338)
T ss_pred ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEecccccccccc
Confidence 799999999999999999999999999999999999999999999999999999999976665554
No 8
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.80 E-value=1.2e-18 Score=122.10 Aligned_cols=89 Identities=35% Similarity=0.518 Sum_probs=84.5
Q ss_pred chHHHhhHHHHHHhHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 83 SLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEE 162 (183)
Q Consensus 83 ~~~~q~~~~~~~~Lk~eie~l~~~lr~~~ge~l~~Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~ 162 (183)
+...+.+..++.+|+.+++.++..+|++.|++|++||++||.+||..|+.+|.+||+||.+++++++..|++++..|.++
T Consensus 11 ~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~e 90 (100)
T PF01486_consen 11 DSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEE 90 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 030090 163 NKNLKQKVR 171 (183)
Q Consensus 163 n~~L~~~~~ 171 (183)
|..|+.++.
T Consensus 91 n~~L~~~~~ 99 (100)
T PF01486_consen 91 NNQLRQKIE 99 (100)
T ss_pred HHHHHHHhc
Confidence 999999885
No 9
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.56 E-value=1.1e-15 Score=127.82 Aligned_cols=68 Identities=38% Similarity=0.530 Sum_probs=64.2
Q ss_pred CCccccceeeecCCcccccccccccchhhhhHHhhhhhcCcceEEEEecCCCcccccCcchhHHHHHH
Q 030090 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIAR 68 (183)
Q Consensus 1 mgR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKA~ELs~LCd~~vavivfs~~gk~~~~~s~~v~~vl~R 68 (183)
|||+|+.|.+|+|+.+|.|||+||+.||+|||+||+||.|.+|.|+|.|.+|.+++|+.|..+.|+.-
T Consensus 81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~~~ 148 (412)
T COG5068 81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVKS 148 (412)
T ss_pred cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCcccccccc
Confidence 78999999999999999999999999999999999999999999999999999999999877766653
No 10
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.70 E-value=0.17 Score=33.02 Aligned_cols=49 Identities=29% Similarity=0.436 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 118 LTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVR 171 (183)
Q Consensus 118 Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~ 171 (183)
|+++.+.+||..+..++..|. ++..++..|+.+...|.++|..|.....
T Consensus 1 M~~E~l~~LE~ki~~aveti~-----~Lq~e~eeLke~n~~L~~e~~~L~~en~ 49 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIA-----LLQMENEELKEKNNELKEENEELKEENE 49 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 578899999999999999886 5555667777775555555555555544
No 11
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.52 E-value=3.3 Score=26.76 Aligned_cols=52 Identities=21% Similarity=0.451 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 118 LTIEELQHLETMLEQGLSRVL---------QTKGDRIMNEISTLERKGAKLLEENKNLKQK 169 (183)
Q Consensus 118 Ls~~eL~~Le~~Le~~L~~IR---------~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~ 169 (183)
||++=+.+||..+..++..|- .-|++.+.++...++.....|..+|.+|+..
T Consensus 1 MSlEv~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e 61 (79)
T COG3074 1 MSLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEE 61 (79)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466667777777777766653 1233344455555555555666666666544
No 12
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=89.23 E-value=4.7 Score=26.68 Aligned_cols=41 Identities=24% Similarity=0.413 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 118 LTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEEN 163 (183)
Q Consensus 118 Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n 163 (183)
||++=|.+||..+..++..|- ++.-+|+.|+.+...|.+++
T Consensus 1 MS~EvleqLE~KIqqAvdtI~-----LLqmEieELKekn~~L~~e~ 41 (79)
T PRK15422 1 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEV 41 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 577888999999999988875 56666777777666555543
No 13
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=88.60 E-value=1 Score=31.80 Aligned_cols=27 Identities=37% Similarity=0.486 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030090 148 EISTLERKGAKLLEENKNLKQKVRLFD 174 (183)
Q Consensus 148 ~i~~l~~k~~~l~~~n~~L~~~~~~~~ 174 (183)
++..|+++.+.|+|||+.|+.+++-+.
T Consensus 73 e~~rlkkk~~~LeEENNlLklKievLL 99 (108)
T cd07429 73 EVLRLKKKNQQLEEENNLLKLKIEVLL 99 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888899999999999987654
No 14
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=88.41 E-value=0.077 Score=26.80 Aligned_cols=13 Identities=38% Similarity=0.772 Sum_probs=10.3
Q ss_pred eEEEEecCCCccc
Q 030090 43 VGVIIFSATGKLF 55 (183)
Q Consensus 43 vavivfs~~gk~~ 55 (183)
..+.+|||.|++|
T Consensus 3 ~~~t~FSp~Grl~ 15 (23)
T PF10584_consen 3 RSITTFSPDGRLF 15 (23)
T ss_dssp SSTTSBBTTSSBH
T ss_pred CCceeECCCCeEE
Confidence 3456899999987
No 15
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=87.56 E-value=4.6 Score=24.49 Aligned_cols=39 Identities=28% Similarity=0.298 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 030090 134 LSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFDLW 176 (183)
Q Consensus 134 L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~~~ 176 (183)
-.+.|.|| ...+..|......|..+|..|..++..+..|
T Consensus 16 A~r~R~rk----k~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 16 ARRSRQRK----KQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34455555 3446778888999999999999999877654
No 16
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=87.49 E-value=6.8 Score=27.55 Aligned_cols=50 Identities=26% Similarity=0.423 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030090 120 IEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFD 174 (183)
Q Consensus 120 ~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~ 174 (183)
++.+.+|+.+|...+..|.+-| .++..|-.....|.-||..|+..+....
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK-----~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELK-----KQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556677777777766665444 3445566667777778888888776654
No 17
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=86.15 E-value=9.8 Score=26.91 Aligned_cols=49 Identities=22% Similarity=0.309 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 120 IEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLF 173 (183)
Q Consensus 120 ~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~ 173 (183)
++.+.+|+.+|...+..+.+-| .++..|-.....|+-||..|+..+...
T Consensus 7 fd~l~~le~~l~~l~~el~~LK-----~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALK-----KQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567778888888777776544 444566667788888888888888865
No 18
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=85.34 E-value=2.5 Score=26.49 Aligned_cols=31 Identities=35% Similarity=0.490 Sum_probs=25.6
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 030090 109 QMRGEDLHGLTIEELQHLETMLEQGLSRVLQ 139 (183)
Q Consensus 109 ~~~ge~l~~Ls~~eL~~Le~~Le~~L~~IR~ 139 (183)
+..|++|+.||++||..--..|+.-+.+++.
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~ 42 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLEA 42 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999988888877777654
No 19
>PRK10884 SH3 domain-containing protein; Provisional
Probab=84.85 E-value=17 Score=28.57 Aligned_cols=76 Identities=8% Similarity=0.159 Sum_probs=39.5
Q ss_pred HHHHHHhHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 90 NSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVL--QTKGDRIMNEISTLERKGAKLLEENKNLK 167 (183)
Q Consensus 90 ~~~~~~Lk~eie~l~~~lr~~~ge~l~~Ls~~eL~~Le~~Le~~L~~IR--~rK~~ll~~~i~~l~~k~~~l~~~n~~L~ 167 (183)
...+..++.+++.++.++..+.++ . -....++...+...-..+. ...++-+.+++..++.+...|..+|..++
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~-~----~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNT-W----NQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777887777777665432 1 1222333333333222222 23344456666666666666666666666
Q ss_pred HHH
Q 030090 168 QKV 170 (183)
Q Consensus 168 ~~~ 170 (183)
..+
T Consensus 167 ~~~ 169 (206)
T PRK10884 167 RTI 169 (206)
T ss_pred HHH
Confidence 544
No 20
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=84.10 E-value=3.3 Score=25.77 Aligned_cols=28 Identities=36% Similarity=0.527 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 143 DRIMNEISTLERKGAKLLEENKNLKQKV 170 (183)
Q Consensus 143 ~ll~~~i~~l~~k~~~l~~~n~~L~~~~ 170 (183)
+.+.++|..|..+...|+.||..|+..+
T Consensus 17 evLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4677888889899999999999888765
No 21
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=82.68 E-value=10 Score=24.24 Aligned_cols=51 Identities=31% Similarity=0.348 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 122 ELQHLETMLEQGLSRVLQTKG--DRIMNEISTLERKGAKLLEENKNLKQKVRL 172 (183)
Q Consensus 122 eL~~Le~~Le~~L~~IR~rK~--~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~ 172 (183)
+|..|+..|+..+.....-+. .++.++...++..-..|.+.|..=+.+|+.
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEa 53 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEA 53 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888887776644332 255555666665555666666666666654
No 22
>smart00338 BRLZ basic region leucin zipper.
Probab=80.05 E-value=12 Score=23.40 Aligned_cols=36 Identities=36% Similarity=0.455 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030090 135 SRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFD 174 (183)
Q Consensus 135 ~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~ 174 (183)
.+.|.||. ..+..|..+...|..+|..|..++..+.
T Consensus 18 ~~~R~rKk----~~~~~Le~~~~~L~~en~~L~~~~~~l~ 53 (65)
T smart00338 18 RRSRERKK----AEIEELERKVEQLEAENERLKKEIERLR 53 (65)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555553 4567788888888888888888887654
No 23
>PRK04098 sec-independent translocase; Provisional
Probab=79.64 E-value=0.94 Score=34.09 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=15.6
Q ss_pred eEEEEecCCCcccccCcchhHHHHHHhhh
Q 030090 43 VGVIIFSATGKLFESSSSSMKDIIARYNM 71 (183)
Q Consensus 43 vavivfs~~gk~~~~~s~~v~~vl~RY~~ 71 (183)
||||||+| ++++... ..+...+..++.
T Consensus 15 VaLlvfGP-~KLP~~~-r~lGk~ir~~K~ 41 (158)
T PRK04098 15 VAIIFLGP-DKLPQAM-VDIAKFFKAVKK 41 (158)
T ss_pred HHHhhcCc-hHHHHHH-HHHHHHHHHHHH
Confidence 68899998 4665443 234444444444
No 24
>PRK09343 prefoldin subunit beta; Provisional
Probab=79.61 E-value=20 Score=25.63 Aligned_cols=53 Identities=21% Similarity=0.078 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Q 030090 129 MLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFDLWNHHLGF 182 (183)
Q Consensus 129 ~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~~~~~~~~~ 182 (183)
-.+.+...+..|+ +.+...|..|.++...+++.-..++..+.++.+--.+.||
T Consensus 68 d~~e~~~~l~~r~-E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~~~~ 120 (121)
T PRK09343 68 DKTKVEKELKERK-ELLELRSRTLEKQEKKLREKLKELQAKINEMLSKYYPQGG 120 (121)
T ss_pred cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 3555556665444 4556889999999999999999999999887766666555
No 25
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=79.44 E-value=25 Score=26.62 Aligned_cols=58 Identities=17% Similarity=0.288 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 115 LHGLTIEELQHLETMLEQGLSRVLQ--TKGDRIMNEISTLERKGAKLLEENKNLKQKVRL 172 (183)
Q Consensus 115 l~~Ls~~eL~~Le~~Le~~L~~IR~--rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~ 172 (183)
...+++++...+-+.+......... .-.+-+..++..|+.+...|..+|..|.+++..
T Consensus 77 ~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~ 136 (161)
T TIGR02894 77 AGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLST 136 (161)
T ss_pred cccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4779999999988888764222211 122345666777777777777777777666554
No 26
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=77.85 E-value=40 Score=28.23 Aligned_cols=60 Identities=23% Similarity=0.295 Sum_probs=42.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 113 EDLHGLTIEELQHLETMLEQGLSRVLQTKGDRI--MNEISTLERKGAKLLEENKNLKQKVRL 172 (183)
Q Consensus 113 e~l~~Ls~~eL~~Le~~Le~~L~~IR~rK~~ll--~~~i~~l~~k~~~l~~~n~~L~~~~~~ 172 (183)
..++.++.++|..+...|...-..|.++|..+. ..++..+..+...+.++-..+...+.+
T Consensus 201 ~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e 262 (325)
T PF08317_consen 201 EEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAE 262 (325)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358889999999999999988888877666643 445566666666555555556555554
No 27
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=77.78 E-value=41 Score=28.23 Aligned_cols=62 Identities=18% Similarity=0.227 Sum_probs=42.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030090 113 EDLHGLTIEELQHLETMLEQGLSRVLQTKGDRI--MNEISTLERKGAKLLEENKNLKQKVRLFD 174 (183)
Q Consensus 113 e~l~~Ls~~eL~~Le~~Le~~L~~IR~rK~~ll--~~~i~~l~~k~~~l~~~n~~L~~~~~~~~ 174 (183)
..+++++.++|..+...|......|..++.++- .+++..+..+.....+.-..+...+.+..
T Consensus 196 ~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae 259 (312)
T smart00787 196 DELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAE 259 (312)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999998888877666643 44455555555555555555555555433
No 28
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=74.54 E-value=18 Score=22.53 Aligned_cols=36 Identities=33% Similarity=0.383 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030090 135 SRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFD 174 (183)
Q Consensus 135 ~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~ 174 (183)
...|.||.. ++..|+.+...|..+|..|...+..+.
T Consensus 18 r~~R~RKk~----~~~~Le~~~~~L~~en~~L~~~~~~L~ 53 (64)
T PF00170_consen 18 RRSRQRKKQ----YIEELEEKVEELESENEELKKELEQLK 53 (64)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666644 356666677777777777776665544
No 29
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=74.49 E-value=14 Score=24.05 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 141 KGDRIMNEISTLERKGAKLLEENKNLKQKVRL 172 (183)
Q Consensus 141 K~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~ 172 (183)
|.+-+.+.|..|+.....|.++|..|...-..
T Consensus 12 ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~ 43 (72)
T PF06005_consen 12 KIQQAVETIALLQMENEELKEKNNELKEENEE 43 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33444555555555555555555555544433
No 30
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=73.69 E-value=3.5 Score=32.40 Aligned_cols=46 Identities=11% Similarity=0.270 Sum_probs=37.1
Q ss_pred chhhhhH----HhhhhhcCcceEEEEecCCCc--cc-ccCcchhHHHHHHhhh
Q 030090 26 RGLFKKA----EELSVLCDAEVGVIIFSATGK--LF-ESSSSSMKDIIARYNM 71 (183)
Q Consensus 26 ~GL~KKA----~ELs~LCd~~vavivfs~~gk--~~-~~~s~~v~~vl~RY~~ 71 (183)
+-|+.|. .|++|-+|-++.|++.+|+-. .| .|+...++.|+..|..
T Consensus 35 ~rllrkl~~~~de~~trvGqqavvl~~~p~kp~~~f~vfGa~pL~~vv~~~~~ 87 (214)
T PF10491_consen 35 TRLLRKLRQTIDEYTTRVGQQAVVLCCTPSKPNPVFKVFGAAPLENVVRNLKP 87 (214)
T ss_pred HHHHHHHHHHHHHHHHhhhceeEEEEecCCCCCCceeeecchhHHHHHHHHHH
Confidence 4466664 799999999999999999642 23 4888999999999875
No 31
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=73.56 E-value=73 Score=31.21 Aligned_cols=18 Identities=6% Similarity=0.135 Sum_probs=11.5
Q ss_pred EEEEecCCCcccccCcch
Q 030090 44 GVIIFSATGKLFESSSSS 61 (183)
Q Consensus 44 avivfs~~gk~~~~~s~~ 61 (183)
+.-+|.++|...-|+.|.
T Consensus 621 ~~~aytldg~~~~~~g~~ 638 (1074)
T KOG0250|consen 621 VTKAYTLDGRQIFAGGPN 638 (1074)
T ss_pred ceeeeccCccccccCCCC
Confidence 445688887665566665
No 32
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=72.89 E-value=30 Score=24.36 Aligned_cols=48 Identities=21% Similarity=0.299 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 120 IEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRL 172 (183)
Q Consensus 120 ~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~ 172 (183)
++.+..|+.+|-..++.+-.-|.+ +.+|=.....|+-||..|+..+.+
T Consensus 7 Fd~v~~le~~l~~l~~el~~lK~~-----l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 7 FDQVDNLEEQLGVLLAELGGLKQH-----LGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhHHHHhhHHHHHHHhCC
Confidence 466777888887777766554443 344444555666666666666543
No 33
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=72.86 E-value=29 Score=24.18 Aligned_cols=46 Identities=24% Similarity=0.344 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 127 ETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLF 173 (183)
Q Consensus 127 e~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~ 173 (183)
+...+.++..+..|.. .+...|..+.++...+...-..++..+.++
T Consensus 62 ~~~~~e~~~~l~~r~e-~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 62 KTDKEEAIQELKEKKE-TLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred eecHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666655544 347778888888888888877777777654
No 34
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=72.04 E-value=82 Score=28.99 Aligned_cols=54 Identities=20% Similarity=0.191 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030090 121 EELQHLETMLEQGLSRVL-----QTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFD 174 (183)
Q Consensus 121 ~eL~~Le~~Le~~L~~IR-----~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~ 174 (183)
+++..|+..|+..-..++ .|+.+.+...|..|.++..+-...-..|..++....
T Consensus 450 ~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 450 REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777776666554 344556677788888777777777788888777654
No 35
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=71.46 E-value=30 Score=25.96 Aligned_cols=24 Identities=21% Similarity=0.149 Sum_probs=10.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Q 030090 118 LTIEELQHLETMLEQGLSRVLQTK 141 (183)
Q Consensus 118 Ls~~eL~~Le~~Le~~L~~IR~rK 141 (183)
.|.+|...++.......+..+.||
T Consensus 142 vs~ee~~~~~~~~~~~~k~w~kRK 165 (169)
T PF07106_consen 142 VSPEEKEKLEKEYKKWRKEWKKRK 165 (169)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443333
No 36
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=70.82 E-value=34 Score=24.11 Aligned_cols=29 Identities=28% Similarity=0.326 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 142 GDRIMNEISTLERKGAKLLEENKNLKQKV 170 (183)
Q Consensus 142 ~~ll~~~i~~l~~k~~~l~~~n~~L~~~~ 170 (183)
-+.+.++|..|..+...|++||.-|+.-+
T Consensus 69 Ve~Lk~qI~eL~er~~~Le~EN~lLk~~~ 97 (123)
T KOG4797|consen 69 VEVLKEQIRELEERNSALERENSLLKTLA 97 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34677888888888888888888887543
No 37
>PRK10884 SH3 domain-containing protein; Provisional
Probab=69.76 E-value=49 Score=26.03 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=9.5
Q ss_pred HhHHHHHHHHHHHHhhc
Q 030090 95 SLSREIADKSRQLRQMR 111 (183)
Q Consensus 95 ~Lk~eie~l~~~lr~~~ 111 (183)
.+...+..++.++..+.
T Consensus 90 ~~~~rlp~le~el~~l~ 106 (206)
T PRK10884 90 SLRTRVPDLENQVKTLT 106 (206)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 35556666666654433
No 38
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=68.99 E-value=37 Score=23.82 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030090 141 KGDRIMNEISTLERKGAKLLEENKNLKQKVRLFD 174 (183)
Q Consensus 141 K~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~ 174 (183)
....+.+++..|+.....|.+||..|+.....+.
T Consensus 16 ~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr 49 (107)
T PF06156_consen 16 QLGQLLEELEELKKQLQELLEENARLRIENEHLR 49 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446788999999999999999999998877655
No 39
>PHA03155 hypothetical protein; Provisional
Probab=67.55 E-value=42 Score=23.86 Aligned_cols=59 Identities=15% Similarity=0.070 Sum_probs=45.0
Q ss_pred HHHhhHHHHHHhHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 85 ELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGD 143 (183)
Q Consensus 85 ~~q~~~~~~~~Lk~eie~l~~~lr~~~ge~l~~Ls~~eL~~Le~~Le~~L~~IR~rK~~ 143 (183)
+++.+..++.+|+-++..|.+.+++-.+.+=.-|+..+=+.+-.....+|...-++|.+
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~~A~~KIe 67 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTKKAEEKIR 67 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445678899999999999998775554445699999999988888888877666643
No 40
>PF10079 DUF2317: Uncharacterized protein conserved in bacteria (DUF2317); InterPro: IPR011199 Members of this protein family include BshC, which is an enzyme required for bacillithiol biosynthesis and described as a cysteine-adding enzyme. Bacillithiol is a low-molecular-weight thiol, an analog of glutathione and mycothiol, and is found largely in the Firmicutes.
Probab=67.51 E-value=36 Score=30.81 Aligned_cols=63 Identities=16% Similarity=0.249 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhccCCCC
Q 030090 121 EELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKL-LEENKNLKQKVRLFDLWNHHLGFP 183 (183)
Q Consensus 121 ~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l-~~~n~~L~~~~~~~~~~~~~~~~~ 183 (183)
+.|.+.-..++..|..+-++-...+..+++.|++|.... .+.+.....++..+..+..|+|.|
T Consensus 440 ~~l~~~~~~~d~tl~~~~e~~~~~~~~ql~~Le~k~~~a~~rk~~~~l~q~~~l~~~L~P~g~~ 503 (542)
T PF10079_consen 440 EPLKEKAAKIDPTLEGLVEKNESKILKQLDYLEKKLLKAEKRKHETALRQLDRLENSLFPNGSP 503 (542)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCCCC
Confidence 344444455555666666666677888999998887654 556688888999999999999987
No 41
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=66.76 E-value=70 Score=28.26 Aligned_cols=60 Identities=23% Similarity=0.483 Sum_probs=36.4
Q ss_pred ceeeecCCcccc-cccc---ccc-------chhhhhHHhhhhhcCcceEEEEecCCCcccccCcchhHHHHHHhhhc
Q 030090 7 KIRKIDNITARQ-VTFS---KRR-------RGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMH 72 (183)
Q Consensus 7 ~ik~Ien~~~R~-~Tf~---KRr-------~GL~KKA~ELs~LCd~~vavivfs~~gk~~~~~s~~v~~vl~RY~~~ 72 (183)
.|.-|.+.+.+. +.|- ||. ++|+|+- .|.+.-.+ -.++|.++|+|..| ++.++|..|..+
T Consensus 257 ~I~~~~D~s~~~~vrivI~lk~~~~~~~~~~~L~k~t-~L~~s~~~--Nm~~~~~~g~p~~~---~l~~iL~~f~~~ 327 (445)
T cd00187 257 GISDVRDESDREGIRFVIELKRGAMAEVVLNGLYKVT-KLQTTFGI--NMVAFDPNGRPKKL---NLKEILQEFLDH 327 (445)
T ss_pred ccceeeeccCCCceEEEEEECCCccHHHHHHHHHHhc-CCceeeee--eEEEEecCCeeEEe---CHHHHHHHHHHH
Confidence 466777777763 3332 222 2555432 22222222 67788899998888 788888888653
No 42
>PF14645 Chibby: Chibby family
Probab=66.24 E-value=12 Score=26.73 Aligned_cols=25 Identities=40% Similarity=0.496 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 148 EISTLERKGAKLLEENKNLKQKVRL 172 (183)
Q Consensus 148 ~i~~l~~k~~~l~~~n~~L~~~~~~ 172 (183)
....++++.+.|+|||+.|+.+++-
T Consensus 72 ~~~~l~~~n~~L~EENN~Lklk~el 96 (116)
T PF14645_consen 72 ENQRLRKENQQLEEENNLLKLKIEL 96 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455777777788888888877764
No 43
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=64.18 E-value=88 Score=26.40 Aligned_cols=85 Identities=16% Similarity=0.194 Sum_probs=51.4
Q ss_pred HHHhHHHHHHHHHHHHhhc--CCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 93 YLSLSREIADKSRQLRQMR--GEDLH--GLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQ 168 (183)
Q Consensus 93 ~~~Lk~eie~l~~~lr~~~--ge~l~--~Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~ 168 (183)
++.|+.....+++..+.+. +.+.+ ++++.. =...|...|...|++ +.-+..++..|+.+...++-++..|+.
T Consensus 32 AEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~---~~~~La~lL~~sre~-Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~ 107 (319)
T PF09789_consen 32 AEQLQERYQALKKKYRELIQEAAGFGDPSIPPEK---ENKNLAQLLSESREQ-NKKLKEEVEELRQKLNEAQGDIKLLRE 107 (319)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccCCccCCccc---chhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 4555555555555554433 11122 122211 123344445555533 445688999999999999999999999
Q ss_pred HHHHHhhhhccCC
Q 030090 169 KVRLFDLWNHHLG 181 (183)
Q Consensus 169 ~~~~~~~~~~~~~ 181 (183)
++........+.|
T Consensus 108 ~la~~r~~~~~~~ 120 (319)
T PF09789_consen 108 KLARQRVGDEGIG 120 (319)
T ss_pred HHHhhhhhhcccc
Confidence 9988765554443
No 44
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=63.64 E-value=62 Score=24.43 Aligned_cols=78 Identities=26% Similarity=0.357 Sum_probs=47.5
Q ss_pred HHHHhHHHHHHHHHHHHhhc--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Q 030090 92 KYLSLSREIADKSRQLRQMR--GEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRI---------MNEISTLERKGAKLL 160 (183)
Q Consensus 92 ~~~~Lk~eie~l~~~lr~~~--ge~l~~Ls~~eL~~Le~~Le~~L~~IR~rK~~ll---------~~~i~~l~~k~~~l~ 160 (183)
....++.++..++..+++.. |+ +|++-|..+|.-.-.....+|.+|-.++. ...+...+.|...+.
T Consensus 14 ~~~~lk~~l~k~~~ql~~ke~lge---~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~ 90 (177)
T PF13870_consen 14 KNITLKHQLAKLEEQLRQKEELGE---GLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLS 90 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666665543 44 46666666665555555555555544433 445666777777777
Q ss_pred HHHHHHHHHHHH
Q 030090 161 EENKNLKQKVRL 172 (183)
Q Consensus 161 ~~n~~L~~~~~~ 172 (183)
.++..++..+..
T Consensus 91 ~~~~~l~~~l~~ 102 (177)
T PF13870_consen 91 EELERLKQELKD 102 (177)
T ss_pred HHHHHHHHHHHH
Confidence 777777766654
No 45
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=62.89 E-value=31 Score=24.01 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 145 IMNEISTLERKGAKLLEENKNLKQKVRL 172 (183)
Q Consensus 145 l~~~i~~l~~k~~~l~~~n~~L~~~~~~ 172 (183)
+..++..++.....++++|..|..++..
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~ 59 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDD 59 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555543
No 46
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=61.68 E-value=57 Score=23.37 Aligned_cols=55 Identities=24% Similarity=0.129 Sum_probs=40.8
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhcC----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 89 ENSKYLSLSREIADKSRQLRQMRG----EDLHGLTIEELQHLETMLEQGLSRVLQTKGD 143 (183)
Q Consensus 89 ~~~~~~~Lk~eie~l~~~lr~~~g----e~l~~Ls~~eL~~Le~~Le~~L~~IR~rK~~ 143 (183)
+..++.+|+-++..|.+.+++--| .+=.-|+..+=+.+-.....+|...-.+|.+
T Consensus 8 LaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I~s~~~~Lss~A~~KIe 66 (118)
T PF05812_consen 8 LAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMITSAVSKLSSQASKKIE 66 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999988776 5556699999999888888888877766654
No 47
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=60.68 E-value=32 Score=23.73 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030090 140 TKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFD 174 (183)
Q Consensus 140 rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~ 174 (183)
+.=|+..++.+-|+++.-.+.++|..|..++..+.
T Consensus 8 ~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk 42 (96)
T PF11365_consen 8 RQLQFVEEEAELLRRKLSELEDENKQLTEELNKYK 42 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567889999999999999999999999998765
No 48
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=60.01 E-value=22 Score=27.04 Aligned_cols=46 Identities=26% Similarity=0.407 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 123 LQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKV 170 (183)
Q Consensus 123 L~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~ 170 (183)
|.+||..+..++.+----=.++ ++-+.|+-..+.|.+|-+.|++++
T Consensus 2 LeD~EsklN~AIERnalLE~EL--dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL--DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777766443222222 334455555666666666666666
No 49
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=58.39 E-value=44 Score=21.21 Aligned_cols=30 Identities=27% Similarity=0.487 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 144 RIMNEISTLERKGAKLLEENKNLKQKVRLF 173 (183)
Q Consensus 144 ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~ 173 (183)
-+..++..++.+...+..+|..|..++..+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667778888888888888888777665
No 50
>smart00340 HALZ homeobox associated leucin zipper.
Probab=58.19 E-value=33 Score=19.93 Aligned_cols=30 Identities=27% Similarity=0.320 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 030090 149 ISTLERKGAKLLEENKNLKQKVRLFDLWNH 178 (183)
Q Consensus 149 i~~l~~k~~~l~~~n~~L~~~~~~~~~~~~ 178 (183)
-+.|++=-..|-+||..|+.++.++...+.
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eLralk~ 36 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQELRALKL 36 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 356777777899999999999988775443
No 51
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=56.42 E-value=1e+02 Score=24.55 Aligned_cols=54 Identities=26% Similarity=0.362 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 118 LTIEELQHLETMLEQGLSRVLQ--TKGDRIMNEISTLERKGAKLLEENKNLKQKVR 171 (183)
Q Consensus 118 Ls~~eL~~Le~~Le~~L~~IR~--rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~ 171 (183)
-...|+..|+..++..-...-. .+..-+..|.+.++..-..|.++|..|+.++.
T Consensus 155 ~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 155 KLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 3456666666666655444432 23334556666666666677777777777664
No 52
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=54.80 E-value=18 Score=25.56 Aligned_cols=37 Identities=30% Similarity=0.395 Sum_probs=25.6
Q ss_pred HHhhhhhcCcceEEEEecCCCcccccCc---chhHHHHHHh
Q 030090 32 AEELSVLCDAEVGVIIFSATGKLFESSS---SSMKDIIARY 69 (183)
Q Consensus 32 A~ELs~LCd~~vavivfs~~gk~~~~~s---~~v~~vl~RY 69 (183)
-.+|-.|-|| +|+..||++|++.+|-. +..-+++.+.
T Consensus 3 l~~Lm~lpGv-~AAg~Fs~~G~l~e~~G~l~~~~a~m~A~m 42 (108)
T PF09941_consen 3 LDKLMKLPGV-VAAGEFSDDGKLVEYKGELDEEMAEMLAKM 42 (108)
T ss_pred HHHhhcCCCe-EEEEEECCCCeEEeeecCCCHHHHHHHHHH
Confidence 3567777777 45678999999998655 3444555544
No 53
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=54.36 E-value=92 Score=23.51 Aligned_cols=45 Identities=24% Similarity=0.278 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 030090 119 TIEELQHLETMLEQGLSRVLQT---KGDRIMNEISTLERKGAKLLEEN 163 (183)
Q Consensus 119 s~~eL~~Le~~Le~~L~~IR~r---K~~ll~~~i~~l~~k~~~l~~~n 163 (183)
+..||..|-.+++.+-.-+|++ |-.++.+||..|+..=+.+.++-
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA~~ile~~ 75 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQEQARKILEEA 75 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788889988888887777765 55577788888777666665543
No 54
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=54.17 E-value=2.2e+02 Score=27.88 Aligned_cols=48 Identities=17% Similarity=0.338 Sum_probs=24.7
Q ss_pred HHHHhHHHHHHHHHHHHhh------cCCCCCCCC---HHHHHHHHHHHHHHHHHHHH
Q 030090 92 KYLSLSREIADKSRQLRQM------RGEDLHGLT---IEELQHLETMLEQGLSRVLQ 139 (183)
Q Consensus 92 ~~~~Lk~eie~l~~~lr~~------~ge~l~~Ls---~~eL~~Le~~Le~~L~~IR~ 139 (183)
++..+++.++.++.++.-+ .|.+.-..| +.+|.+--..|.++|-+.|.
T Consensus 333 eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRD 389 (1243)
T KOG0971|consen 333 EVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRD 389 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555544443211 144443344 55555555567788777764
No 55
>COG4365 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.03 E-value=20 Score=31.36 Aligned_cols=44 Identities=20% Similarity=0.197 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhccCCCC
Q 030090 140 TKGDRIMNEISTLERKG-AKLLEENKNLKQKVRLFDLWNHHLGFP 183 (183)
Q Consensus 140 rK~~ll~~~i~~l~~k~-~~l~~~n~~L~~~~~~~~~~~~~~~~~ 183 (183)
+-..++.+|++.|.+.. ...+++|..-.++.++++.|.+|+|+|
T Consensus 455 KN~~ii~~Ql~flerr~~~~iee~~~~~lk~f~eiq~~lkP~g~l 499 (537)
T COG4365 455 KNNEIIIQQLDFLERRYLLNIEEENDISLKQFREIQETLKPMGGL 499 (537)
T ss_pred ccHHHHHHHHHHHHHHHHHhHHHhcCccHHHHHHHHHhhCcccch
Confidence 44557778888876654 456888888889999999999999986
No 56
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=53.97 E-value=1.3e+02 Score=26.74 Aligned_cols=15 Identities=40% Similarity=0.240 Sum_probs=9.6
Q ss_pred HhhhhhcCcceEEEE
Q 030090 33 EELSVLCDAEVGVII 47 (183)
Q Consensus 33 ~ELs~LCd~~vaviv 47 (183)
.|+||-|.-+|.+--
T Consensus 254 pe~sv~~qkev~~e~ 268 (527)
T PF15066_consen 254 PEMSVSHQKEVTVEG 268 (527)
T ss_pred cccccchhhhcchhc
Confidence 567777766666543
No 57
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=53.89 E-value=59 Score=25.30 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 139 QTKGDRIMNEISTLERKGAKLLEENKNLKQKV 170 (183)
Q Consensus 139 ~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~ 170 (183)
.|+-|....+|..|+.-.+.|+++|..|+.-+
T Consensus 47 NrrlQ~hl~EIR~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 47 NRRLQQHLNEIRGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777778888889888999999998887544
No 58
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=52.68 E-value=46 Score=19.50 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030090 140 TKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFD 174 (183)
Q Consensus 140 rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~ 174 (183)
+=...+....+.|...-..|..||..|+.+|..+.
T Consensus 5 ~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 5 RDYDALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777888899999999999999998887654
No 59
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=52.09 E-value=68 Score=21.27 Aligned_cols=29 Identities=28% Similarity=0.374 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 141 KGDRIMNEISTLERKGAKLLEENKNLKQK 169 (183)
Q Consensus 141 K~~ll~~~i~~l~~k~~~l~~~n~~L~~~ 169 (183)
|.+...+.|.-||.....|.+.|..|...
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e 40 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555555555554
No 60
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=51.43 E-value=5.2 Score=28.25 Aligned_cols=38 Identities=21% Similarity=0.413 Sum_probs=28.1
Q ss_pred cccccccccc---------hhhhhHHhhhhhcCcceEEEEecCCCcc
Q 030090 17 RQVTFSKRRR---------GLFKKAEELSVLCDAEVGVIIFSATGKL 54 (183)
Q Consensus 17 R~~Tf~KRr~---------GL~KKA~ELs~LCd~~vavivfs~~gk~ 54 (183)
+..-||+=|+ |=+-|+-|+.+-||.|+-+++..|.|.+
T Consensus 50 ~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~Dall~~V~q~gg~ 96 (111)
T COG0139 50 EAHYYSRSRQELWTKGETSGHTQKVVEIRLDCDGDALLLLVEQIGGP 96 (111)
T ss_pred eEEEEEcchhhheccccccCceEEEEEEEcCCCCCEEEEEEEeCCCC
Confidence 3444566565 4455678999999999999999996643
No 61
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=51.27 E-value=85 Score=22.17 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030090 140 TKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFD 174 (183)
Q Consensus 140 rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~ 174 (183)
.....+..++..|+.....+.+||..|+.....+.
T Consensus 15 ~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr 49 (110)
T PRK13169 15 QNLGVLLKELGALKKQLAELLEENTALRLENDKLR 49 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446688899999999999999999988765544
No 62
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=49.95 E-value=77 Score=21.84 Aligned_cols=48 Identities=25% Similarity=0.137 Sum_probs=34.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 113 EDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLF 173 (183)
Q Consensus 113 e~l~~Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~ 173 (183)
-..++++++++.. +.-......+++.|......+..+|..|...|...
T Consensus 59 ~~~~~l~P~~~i~-------------a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~ 106 (109)
T PF03980_consen 59 VWRHSLTPEEDIR-------------AHLAPYKKKEREQLNARLQELEEENEALAEEIQEQ 106 (109)
T ss_pred CCCCCCChHHHHH-------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567788876532 22223336667889999999999999999988754
No 63
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=49.69 E-value=90 Score=22.03 Aligned_cols=45 Identities=22% Similarity=0.241 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 129 MLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLF 173 (183)
Q Consensus 129 ~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~ 173 (183)
.++.++.-|..--+--..++++.|+.+...|.+.|..|..+-.-+
T Consensus 49 KIeQAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~EN~lL 93 (123)
T KOG4797|consen 49 KIEQAMDLVKTHLMFAVREEVEVLKEQIRELEERNSALERENSLL 93 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445544433344447888888888888888888888776544
No 64
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=49.23 E-value=1.7e+02 Score=25.02 Aligned_cols=45 Identities=13% Similarity=0.134 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 127 ETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRL 172 (183)
Q Consensus 127 e~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~ 172 (183)
..+||..+.+.++++.++ .-+++.+.+.-..-.+++..|..++.+
T Consensus 129 ~q~LE~li~~~~EEn~~l-qlqL~~l~~e~~Ekeeesq~LnrELaE 173 (401)
T PF06785_consen 129 IQHLEGLIRHLREENQCL-QLQLDALQQECGEKEEESQTLNRELAE 173 (401)
T ss_pred HHHHHHHHHHHHHHHHHH-HHhHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 345566666665554433 444555555555556666666555554
No 65
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=48.93 E-value=14 Score=27.13 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=19.4
Q ss_pred hhhhcCcceEEEEecCCCcccccC
Q 030090 35 LSVLCDAEVGVIIFSATGKLFESS 58 (183)
Q Consensus 35 Ls~LCd~~vavivfs~~gk~~~~~ 58 (183)
+.++|||||-++|-+-+.+-..||
T Consensus 59 ~tt~~dadvi~~v~~and~~s~f~ 82 (148)
T COG4917 59 ITTLQDADVIIYVHAANDPESRFP 82 (148)
T ss_pred HHHhhccceeeeeecccCccccCC
Confidence 578999999999999887755554
No 66
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=48.57 E-value=3e+02 Score=27.78 Aligned_cols=62 Identities=13% Similarity=0.175 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 030090 117 GLTIEELQHLETMLEQGLSRVLQT------KGDRIMNEISTLERKGAKLLEENKNLKQKVRLFDLWNH 178 (183)
Q Consensus 117 ~Ls~~eL~~Le~~Le~~L~~IR~r------K~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~~~~~ 178 (183)
+.++++|+.--..++..+..++.. ..+-+..+|..|+.+...+......+...+.....|..
T Consensus 821 ~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~ 888 (1311)
T TIGR00606 821 DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEE 888 (1311)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358888887766666666666322 22234677777877777777777777777766666654
No 67
>PHA03162 hypothetical protein; Provisional
Probab=48.42 E-value=1.1e+02 Score=22.44 Aligned_cols=55 Identities=15% Similarity=0.074 Sum_probs=42.8
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhcCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 89 ENSKYLSLSREIADKSRQLRQMRGED----LHGLTIEELQHLETMLEQGLSRVLQTKGD 143 (183)
Q Consensus 89 ~~~~~~~Lk~eie~l~~~lr~~~ge~----l~~Ls~~eL~~Le~~Le~~L~~IR~rK~~ 143 (183)
+..++.+|+.++..|.+.+++-.|.+ =..|+..+=+.+-.....+|...-.+|.+
T Consensus 18 LaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s~v~~Lts~A~kKIe 76 (135)
T PHA03162 18 LAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGAATAALTRQAAKKIE 76 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999987765543 23499999988888888888877766654
No 68
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=47.69 E-value=1.3e+02 Score=29.56 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030090 127 ETMLEQGLSRVLQTKGD-RIMNEISTLERKGAKLLEENKNLKQKVRLFDL 175 (183)
Q Consensus 127 e~~Le~~L~~IR~rK~~-ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~~ 175 (183)
..+|++-|.+.|+|=.. -+..+|-.++++...++.++...+.++++++.
T Consensus 280 keMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~e 329 (1195)
T KOG4643|consen 280 KEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHE 329 (1195)
T ss_pred HHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 34567777777766543 44566777888888888888888888877664
No 69
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=47.62 E-value=1.5e+02 Score=27.11 Aligned_cols=51 Identities=14% Similarity=0.230 Sum_probs=27.4
Q ss_pred hHHHHHHh--HHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 030090 89 ENSKYLSL--SREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTK 141 (183)
Q Consensus 89 ~~~~~~~L--k~eie~l~~~lr~~~ge~l~~Ls~~eL~~Le~~Le~~L~~IR~rK 141 (183)
|+..+..| +++++..+..+..+...++. ++.++.+....++.....+++-|
T Consensus 180 w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik--~p~~i~~~~~e~d~lk~e~~~~~ 232 (555)
T TIGR03545 180 WKKRKKDLPNKQDLEEYKKRLEAIKKKDIK--NPLELQKIKEEFDKLKKEGKADK 232 (555)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455 44555555555555555443 45666666666665555554433
No 70
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=47.11 E-value=2e+02 Score=25.37 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=21.3
Q ss_pred ceEEEEecCCCcccccCcchhHHHHHHhhh
Q 030090 42 EVGVIIFSATGKLFESSSSSMKDIIARYNM 71 (183)
Q Consensus 42 ~vavivfs~~gk~~~~~s~~v~~vl~RY~~ 71 (183)
-+-.++|+++|++..| .++.+||..|-.
T Consensus 298 ~~Nm~~~d~~g~~~~~--~~~~~Il~~f~~ 325 (439)
T PHA02592 298 SQNITVINENGKLKVY--ENAEDLIRDFVE 325 (439)
T ss_pred eeeEEEEecCCeeeec--CCHHHHHHHHHH
Confidence 3667889899988777 467788887754
No 71
>PF08432 Vfa1: AAA-ATPase Vps4-associated protein 1; InterPro: IPR013640 This is a family of fungal proteins of unknown function.
Probab=47.02 E-value=82 Score=24.12 Aligned_cols=15 Identities=20% Similarity=0.268 Sum_probs=11.3
Q ss_pred hcCcceEEEEecCCC
Q 030090 38 LCDAEVGVIIFSATG 52 (183)
Q Consensus 38 LCd~~vavivfs~~g 52 (183)
..|+..|.|||-|+-
T Consensus 10 ~~~~k~C~IC~Kpst 24 (182)
T PF08432_consen 10 ETDAKACFICYKPST 24 (182)
T ss_pred cCCCCceeEecCCCc
Confidence 357888888888854
No 72
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.59 E-value=79 Score=20.48 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 144 RIMNEISTLERKGAKLLEENKNLKQKV 170 (183)
Q Consensus 144 ll~~~i~~l~~k~~~l~~~n~~L~~~~ 170 (183)
...+.|.-||-....|.+.|..|...+
T Consensus 15 qAvdTI~LLQmEieELKEknn~l~~e~ 41 (79)
T COG3074 15 QAIDTITLLQMEIEELKEKNNSLSQEV 41 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHH
Confidence 334444444444444444444444333
No 73
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=46.46 E-value=19 Score=26.63 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=24.9
Q ss_pred cCcceEEEEecCCCcccccCcc-hhHHHHHHhhhc
Q 030090 39 CDAEVGVIIFSATGKLFESSSS-SMKDIIARYNMH 72 (183)
Q Consensus 39 Cd~~vavivfs~~gk~~~~~s~-~v~~vl~RY~~~ 72 (183)
|+...++-|..++|++.+|..| .+.+|+..|=.+
T Consensus 12 ~~~~~~vkvv~~~G~v~~~~~pv~a~evm~~~P~h 46 (181)
T PF14009_consen 12 SSSAATVKVVHPDGKVEEFKRPVTAAEVMLENPGH 46 (181)
T ss_pred cCCCceEEEEcCCCcEEEeCCCcCHHHHHHHCCCC
Confidence 3444555555589999998775 999999988655
No 74
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=46.08 E-value=87 Score=21.85 Aligned_cols=14 Identities=29% Similarity=0.389 Sum_probs=8.7
Q ss_pred CCCHHHHHHHHHHH
Q 030090 117 GLTIEELQHLETML 130 (183)
Q Consensus 117 ~Ls~~eL~~Le~~L 130 (183)
+++++|+..+-...
T Consensus 56 G~sl~eI~~~l~~~ 69 (116)
T cd04769 56 GFTLAELKAIFAGH 69 (116)
T ss_pred CCCHHHHHHHHhcc
Confidence 36777777665543
No 75
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=45.51 E-value=12 Score=29.75 Aligned_cols=18 Identities=28% Similarity=0.591 Sum_probs=14.6
Q ss_pred cceEEEEecCCCcccc--cC
Q 030090 41 AEVGVIIFSATGKLFE--SS 58 (183)
Q Consensus 41 ~~vavivfs~~gk~~~--~~ 58 (183)
-|-||-||||+|.++. |+
T Consensus 4 ydraltvFSPDGhL~QVEYA 23 (249)
T KOG0183|consen 4 YDRALTVFSPDGHLFQVEYA 23 (249)
T ss_pred cccceEEECCCCCEEeeHhH
Confidence 4678999999999864 66
No 76
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=45.46 E-value=1.7e+02 Score=23.95 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030090 139 QTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFD 174 (183)
Q Consensus 139 ~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~ 174 (183)
.+.++.|..+|..-+.-...+.++...|+..|..+.
T Consensus 185 ~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~ 220 (258)
T PF15397_consen 185 TLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQ 220 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666667777666666777777777777776644
No 77
>PRK04863 mukB cell division protein MukB; Provisional
Probab=45.36 E-value=3.7e+02 Score=27.82 Aligned_cols=67 Identities=18% Similarity=0.151 Sum_probs=48.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhc
Q 030090 112 GEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRI------MNEISTLERKGAKLLEENKNLKQKVRLFD-LWNH 178 (183)
Q Consensus 112 ge~l~~Ls~~eL~~Le~~Le~~L~~IR~rK~~ll------~~~i~~l~~k~~~l~~~n~~L~~~~~~~~-~~~~ 178 (183)
|-+.+.=--+.+..-...|+..|..-|.|+.++. ..+|+.|.++...+..+...+...|.... .|.+
T Consensus 1047 g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~~W~~ 1120 (1486)
T PRK04863 1047 GVPADSGAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAGWCA 1120 (1486)
T ss_pred CCCCCccHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433344455556889999999999999876 45678888888888888888888887644 6654
No 78
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=45.24 E-value=12 Score=29.94 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=19.4
Q ss_pred hhhcCcceEEEEecCCCcccc--cCc
Q 030090 36 SVLCDAEVGVIIFSATGKLFE--SSS 59 (183)
Q Consensus 36 s~LCd~~vavivfs~~gk~~~--~~s 59 (183)
||=+|-|.|.-+|||+|++|. |+.
T Consensus 3 sIGtGyDls~s~fSpdGrvfQveYA~ 28 (254)
T KOG0184|consen 3 SIGTGYDLSASTFSPDGRVFQVEYAQ 28 (254)
T ss_pred cccccccccceeeCCCCceehHHHHH
Confidence 455788999999999999874 654
No 79
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=44.90 E-value=96 Score=22.62 Aligned_cols=47 Identities=13% Similarity=0.281 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030090 128 TMLEQGLSRVLQTKGDR------IMNEISTLERKGAKLLEENKNLKQKVRLFD 174 (183)
Q Consensus 128 ~~Le~~L~~IR~rK~~l------l~~~i~~l~~k~~~l~~~n~~L~~~~~~~~ 174 (183)
......+..++.|-.++ ++..++.++.+...+..+-..|..+++.+.
T Consensus 68 ~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~ 120 (141)
T PF13874_consen 68 LETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALE 120 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 33444455555444444 455566777777777777777777777655
No 80
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=44.87 E-value=2.5e+02 Score=25.66 Aligned_cols=30 Identities=20% Similarity=0.102 Sum_probs=16.2
Q ss_pred hhHHhhhhhcCcceEEEEecC-CC------cccccCcc
Q 030090 30 KKAEELSVLCDAEVGVIIFSA-TG------KLFESSSS 60 (183)
Q Consensus 30 KKA~ELs~LCd~~vavivfs~-~g------k~~~~~s~ 60 (183)
.+|+.|.-.-| +-=..||.. .| .||.|+.|
T Consensus 77 F~ayyLPk~~~-e~YqfcYv~~~g~V~G~S~pFqf~~~ 113 (546)
T PF07888_consen 77 FQAYYLPKDDD-EFYQFCYVDQKGEVRGASTPFQFRAP 113 (546)
T ss_pred ECcccCCCCCC-CeEEEEEECCCccEEEecCCcccCCC
Confidence 35777776433 344445443 34 36777764
No 81
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=44.75 E-value=85 Score=20.32 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 144 RIMNEISTLERKGAKLLEENKNLKQKVRLF 173 (183)
Q Consensus 144 ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~ 173 (183)
.+..++..++.+...++.+|..|+.++..+
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556678888888888999999999888653
No 82
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=44.44 E-value=20 Score=30.89 Aligned_cols=41 Identities=37% Similarity=0.472 Sum_probs=28.1
Q ss_pred HhhhhhcCcce--EEEEecCCCcccccCc---chhHHHHHHhhhcc
Q 030090 33 EELSVLCDAEV--GVIIFSATGKLFESSS---SSMKDIIARYNMHS 73 (183)
Q Consensus 33 ~ELs~LCd~~v--avivfs~~gk~~~~~s---~~v~~vl~RY~~~~ 73 (183)
+-|||+||-+| |||--..+|=-|.-|. +++++++..|...+
T Consensus 367 yalSV~~~~~V~HClIy~tatG~GFa~pyn~y~tlk~lV~hY~h~S 412 (464)
T KOG4637|consen 367 YALSVVHDGEVKHCLIYQTATGFGFAEPYNLYSTLKELVLHYQHTS 412 (464)
T ss_pred eEEEEEECCceeeeEEeeccccccccchhHHHHHHHHHHHHHhhhh
Confidence 46899997655 6665555664444333 58999999998654
No 83
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=44.04 E-value=2.5e+02 Score=25.54 Aligned_cols=62 Identities=16% Similarity=0.280 Sum_probs=51.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 030090 114 DLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFDLW 176 (183)
Q Consensus 114 ~l~~Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~~~ 176 (183)
+.....+..|+.--..++.+|..|-....+ +.+.+..|++-+...++.-..++.++..+.|.
T Consensus 371 ~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~-~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~ 432 (570)
T COG4477 371 EAQEVAYSELQDNLEEIEKALTDIEDEQEK-VQEHLTSLRKDELEARENLERLKSKLHEIKRY 432 (570)
T ss_pred hcccccHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888998888999999999766655 48889999999999999999999999887654
No 84
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=43.77 E-value=85 Score=20.01 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 146 MNEISTLERKGAKLLEENKNLKQKVR 171 (183)
Q Consensus 146 ~~~i~~l~~k~~~l~~~n~~L~~~~~ 171 (183)
..+-..|+.....+..|+..|..+.+
T Consensus 20 ~~EN~~Lr~q~~~~~~ER~~L~ekne 45 (65)
T TIGR02449 20 KSENRLLRAQEKTWREERAQLLEKNE 45 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444443
No 85
>PHA03162 hypothetical protein; Provisional
Probab=43.45 E-value=44 Score=24.35 Aligned_cols=24 Identities=42% Similarity=0.462 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 149 ISTLERKGAKLLEENKNLKQKVRL 172 (183)
Q Consensus 149 i~~l~~k~~~l~~~n~~L~~~~~~ 172 (183)
++.|......|+-||+.|+++|..
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~ 38 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKE 38 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567778888999999999999954
No 86
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=43.06 E-value=94 Score=20.83 Aligned_cols=32 Identities=25% Similarity=0.457 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 142 GDRIMNEISTLERKGAKLLEENKNLKQKVRLF 173 (183)
Q Consensus 142 ~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~ 173 (183)
...+..+++.+++....|+++|..|.-+....
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556779999999999999999999887653
No 87
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=42.56 E-value=1.3e+02 Score=21.66 Aligned_cols=52 Identities=21% Similarity=0.204 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 030090 129 MLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFDLWNHHLG 181 (183)
Q Consensus 129 ~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~~~~~~~~ 181 (183)
.-+.++..+..|+ +.+.-+|.+|.+.+..++++-..|+..+.....-.+++|
T Consensus 67 ~k~~~~~eL~er~-E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~~~~~~ 118 (119)
T COG1382 67 SKEEAVDELEERK-ETLELRIKTLEKQEEKLQERLEELQSEIQKALGDAANGG 118 (119)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 3444555554444 466788999999999999999999999877665555544
No 88
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=42.29 E-value=2.5e+02 Score=25.06 Aligned_cols=70 Identities=13% Similarity=0.187 Sum_probs=37.5
Q ss_pred HHHHHHhHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 90 NSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQK 169 (183)
Q Consensus 90 ~~~~~~Lk~eie~l~~~lr~~~ge~l~~Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~ 169 (183)
..++..|..+++.+..++..+... ...+..++..++...| +-+.++.+.|+.....++..-..|+.+
T Consensus 72 r~~~~~l~~~N~~l~~eN~~L~~r---------~~~id~~i~~av~~~~----~~~~~~~~ql~~~~~~~~~~l~~l~~~ 138 (472)
T TIGR03752 72 RKRLAKLISENEALKAENERLQKR---------EQSIDQQIQQAVQSET----QELTKEIEQLKSERQQLQGLIDQLQRR 138 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---------hhhHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666665555443221 1223455555555443 334455666666666666666666666
Q ss_pred HHH
Q 030090 170 VRL 172 (183)
Q Consensus 170 ~~~ 172 (183)
+..
T Consensus 139 l~~ 141 (472)
T TIGR03752 139 LAG 141 (472)
T ss_pred Hhh
Confidence 643
No 89
>PF09388 SpoOE-like: Spo0E like sporulation regulatory protein; InterPro: IPR018540 Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure []. ; PDB: 2BZB_B 2C0S_A.
Probab=41.18 E-value=64 Score=18.57 Aligned_cols=40 Identities=25% Similarity=0.373 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 030090 96 LSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRV 137 (183)
Q Consensus 96 Lk~eie~l~~~lr~~~ge~l~~Ls~~eL~~Le~~Le~~L~~I 137 (183)
|..+|+.++.++-.+.... +++-.+...+.+.|+..+...
T Consensus 2 L~~~Ie~~R~~L~~~~~~~--~l~~~~vl~~Sq~LD~lI~~y 41 (45)
T PF09388_consen 2 LLEEIEELRQELNELAEKK--GLTDPEVLELSQELDKLINEY 41 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHH
Confidence 4566777776665554333 677888888888888876643
No 90
>PHA03155 hypothetical protein; Provisional
Probab=40.47 E-value=53 Score=23.35 Aligned_cols=24 Identities=42% Similarity=0.455 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 149 ISTLERKGAKLLEENKNLKQKVRL 172 (183)
Q Consensus 149 i~~l~~k~~~l~~~n~~L~~~~~~ 172 (183)
++.|......|+-||+.|++++..
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 567778888899999999999853
No 91
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=39.97 E-value=1.2e+02 Score=20.85 Aligned_cols=46 Identities=17% Similarity=0.271 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 030090 130 LEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFDLW 176 (183)
Q Consensus 130 Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~~~ 176 (183)
++.+..-+ .++...+.++++.+......+......+...+....+|
T Consensus 75 ~~eA~~~l-~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 120 (120)
T PF02996_consen 75 LEEAIEFL-KKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLYQQ 120 (120)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44554444 35555667778888888888888888888888777665
No 92
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=39.97 E-value=1.2e+02 Score=20.86 Aligned_cols=53 Identities=21% Similarity=0.322 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 117 GLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKV 170 (183)
Q Consensus 117 ~Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~ 170 (183)
++|++|+.++-......-..+ .....++.+++..+..+...|...-..|..++
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (113)
T cd01109 57 GMSIKDIKEYAELRREGDSTI-PERLELLEEHREELEEQIAELQETLAYLDYKI 109 (113)
T ss_pred CCCHHHHHHHHHHHccCCccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888877655432211111 12234555556666666555555555555544
No 93
>PF01502 PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPro: IPR002496 Phosphoribosyl-AMP cyclohydrolase 3.5.4.19 from EC catalyses the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O = 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl) imidazole-4-carboxamide It requires Zn2+ ions for activity [].; GO: 0004635 phosphoribosyl-AMP cyclohydrolase activity, 0000105 histidine biosynthetic process; PDB: 1ZPS_B.
Probab=39.90 E-value=5.6 Score=26.17 Aligned_cols=37 Identities=24% Similarity=0.487 Sum_probs=27.1
Q ss_pred cccccccccchhhh---------hHHhhhhhcCcceEEEEecCCCc
Q 030090 17 RQVTFSKRRRGLFK---------KAEELSVLCDAEVGVIIFSATGK 53 (183)
Q Consensus 17 R~~Tf~KRr~GL~K---------KA~ELs~LCd~~vavivfs~~gk 53 (183)
+-+-||+-|++|-. ++.|+.+-||.|+-++..-|.|.
T Consensus 18 ~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V~~~G~ 63 (75)
T PF01502_consen 18 RATYYSRSRNRLWRKGETSGNTQKVVEIRLDCDGDALLFKVEQVGP 63 (75)
T ss_dssp B-EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS-
T ss_pred cEEEEEccCCcEeeEECCCCCEEEEEEEEecCCCCeEEEEEEeCCC
Confidence 44556777766644 46799999999999999999887
No 94
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=39.73 E-value=24 Score=32.51 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.0
Q ss_pred hhhcCcceEEEEecCCCccccc
Q 030090 36 SVLCDAEVGVIIFSATGKLFES 57 (183)
Q Consensus 36 s~LCd~~vavivfs~~gk~~~~ 57 (183)
|||.++-++||.|.+.|.++++
T Consensus 374 ~VLsgvtaGVi~~d~~g~i~t~ 395 (712)
T COG5000 374 AVLSGLTAGVIGFDNRGCITTV 395 (712)
T ss_pred HHHhcCceeEEEEcCCCeeEee
Confidence 6999999999999999988774
No 95
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=39.58 E-value=1.4e+02 Score=21.38 Aligned_cols=31 Identities=29% Similarity=0.447 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 143 DRIMNEISTLERKGAKLLEENKNLKQKVRLF 173 (183)
Q Consensus 143 ~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~ 173 (183)
..+..++..++.+...|..+|..|..++..+
T Consensus 101 ~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 101 EQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3568889999999999999999999998764
No 96
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=39.35 E-value=2.1e+02 Score=25.55 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 144 RIMNEISTLERKGAKLLEENKNLKQKVRL 172 (183)
Q Consensus 144 ll~~~i~~l~~k~~~l~~~n~~L~~~~~~ 172 (183)
++..+...++.+...+..+|..|+.+++.
T Consensus 94 ~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 94 VLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 45555667778888899999999999854
No 97
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=38.90 E-value=1.4e+02 Score=20.96 Aligned_cols=30 Identities=23% Similarity=0.267 Sum_probs=24.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 115 LHGLTIEELQHLETMLEQGLSRVLQTKGDR 144 (183)
Q Consensus 115 l~~Ls~~eL~~Le~~Le~~L~~IR~rK~~l 144 (183)
-.+.+-+++..|...++..|+++|.|=...
T Consensus 31 sg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~ 60 (104)
T COG4575 31 SGSLAGDEAEELRSKAESALKEARDRLGDT 60 (104)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345788999999999999999998765443
No 98
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=38.80 E-value=2.3e+02 Score=23.68 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 120 IEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVR 171 (183)
Q Consensus 120 ~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~ 171 (183)
++|+..+....+..-+.|+ -..+.+...|-.+......|..+|..|..+++
T Consensus 30 ~ediei~Kekn~~Lqk~lK-LneE~ltkTi~qy~~QLn~L~aENt~L~SkLe 80 (305)
T PF14915_consen 30 LEDIEILKEKNDDLQKSLK-LNEETLTKTIFQYNGQLNVLKAENTMLNSKLE 80 (305)
T ss_pred HHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHH
Confidence 4555555555555444332 44555666666666777777778888877774
No 99
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=37.87 E-value=2.3e+02 Score=23.32 Aligned_cols=54 Identities=26% Similarity=0.221 Sum_probs=34.1
Q ss_pred HHHHHHhHHHHHHHHHHHHhhcCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 90 NSKYLSLSREIADKSRQLRQMRGED---LHGLTIEELQHLETMLEQGLSRVLQTKGD 143 (183)
Q Consensus 90 ~~~~~~Lk~eie~l~~~lr~~~ge~---l~~Ls~~eL~~Le~~Le~~L~~IR~rK~~ 143 (183)
..+...|..+++..++..-.+...+ +..+.-++|+.+-..|++.|..+.++-.+
T Consensus 58 ~~~~k~L~aE~~qwqk~~peii~~n~~VL~~lgkeelqkl~~eLe~vLs~~q~Knek 114 (268)
T PF11802_consen 58 MMRVKCLTAELEQWQKRTPEIIPLNPEVLLTLGKEELQKLISELEMVLSTVQSKNEK 114 (268)
T ss_pred HHHHHHHHHHHHHHHhcCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566665555443333222 44577788999999999999988765544
No 100
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=37.67 E-value=60 Score=19.46 Aligned_cols=18 Identities=39% Similarity=0.372 Sum_probs=11.9
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 030090 115 LHGLTIEELQHLETMLEQ 132 (183)
Q Consensus 115 l~~Ls~~eL~~Le~~Le~ 132 (183)
|..+|++||++.-..|+.
T Consensus 5 Lk~ls~~eL~~rl~~LD~ 22 (49)
T PF11629_consen 5 LKFLSYEELQQRLASLDP 22 (49)
T ss_dssp GGGS-HHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHhCCH
Confidence 556888888886665554
No 101
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=37.49 E-value=30 Score=28.00 Aligned_cols=35 Identities=29% Similarity=0.464 Sum_probs=26.8
Q ss_pred HhhhhhcCcceEEEEecCCCcccccCc-------chhHHHHH
Q 030090 33 EELSVLCDAEVGVIIFSATGKLFESSS-------SSMKDIIA 67 (183)
Q Consensus 33 ~ELs~LCd~~vavivfs~~gk~~~~~s-------~~v~~vl~ 67 (183)
.+|.-.++++|+|||+.+.|+++--+. ..+..+.+
T Consensus 133 ~~l~~~~g~~v~VIItDt~gr~~R~G~~gvAIG~aG~~~l~d 174 (243)
T TIGR01916 133 RGLRELTGVDVGVIITDTNGRPFREGQVGVAIGAAGLKVLRD 174 (243)
T ss_pred HHHHHHHCCCEEEEEECCCCCccccCCCCeeeeccCChHHHh
Confidence 356678999999999999999887655 35555555
No 102
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=37.31 E-value=59 Score=27.27 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 148 EISTLERKGAKLLEENKNLKQKVRLF 173 (183)
Q Consensus 148 ~i~~l~~k~~~l~~~n~~L~~~~~~~ 173 (183)
+++.|++|.+.|.+||..|+.+...+
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L 186 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQL 186 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35889999999999999999877543
No 103
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=37.26 E-value=1.5e+02 Score=22.73 Aligned_cols=9 Identities=33% Similarity=0.744 Sum_probs=6.8
Q ss_pred CCCCCHHHH
Q 030090 115 LHGLTIEEL 123 (183)
Q Consensus 115 l~~Ls~~eL 123 (183)
..+++++++
T Consensus 100 ~~~it~~~v 108 (170)
T PRK13923 100 ISDLTLEDV 108 (170)
T ss_pred cccCCHHHH
Confidence 567888887
No 104
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=37.00 E-value=30 Score=18.67 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=15.9
Q ss_pred hhhhhcCcceEEEEecCCCcccc
Q 030090 34 ELSVLCDAEVGVIIFSATGKLFE 56 (183)
Q Consensus 34 ELs~LCd~~vavivfs~~gk~~~ 56 (183)
.|+--||+-|-+-||...|..-.
T Consensus 2 hlcpkcgvgvl~pvy~~kgeikv 24 (36)
T PF09151_consen 2 HLCPKCGVGVLEPVYNQKGEIKV 24 (36)
T ss_dssp -B-TTTSSSBEEEEE-TTS-EEE
T ss_pred ccCCccCceEEEEeecCCCcEEE
Confidence 36778999999999999995433
No 105
>PF10623 PilI: Plasmid conjugative transfer protein PilI; InterPro: IPR018897 The thin pilus of plasmid R64 belongs to the type IV family and is required for liquid matings. PilI is one of 14 genes that have been identified as being involved in biogenesis of the R64 thin pilus [].
Probab=36.65 E-value=42 Score=22.25 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=24.6
Q ss_pred ceEEEEecCCC--cccccCc-chhHHHHHHhhhc
Q 030090 42 EVGVIIFSATG--KLFESSS-SSMKDIIARYNMH 72 (183)
Q Consensus 42 ~vavivfs~~g--k~~~~~s-~~v~~vl~RY~~~ 72 (183)
.+-|+|++.+| +++.++. ...+.++.+|...
T Consensus 8 rl~VLVv~n~c~~kL~~~~~~~D~~~i~r~f~Tp 41 (83)
T PF10623_consen 8 RLQVLVVSNHCERKLFDTKPDNDPDKIARRFCTP 41 (83)
T ss_pred eEEEEEEeCCcceeEeecCCCCCHHHHHhhccCc
Confidence 46789999887 5777766 6999999999753
No 106
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=36.23 E-value=1.4e+02 Score=20.25 Aligned_cols=40 Identities=15% Similarity=0.274 Sum_probs=20.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 117 GLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKG 156 (183)
Q Consensus 117 ~Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~ 156 (183)
+++++++..+-.........+-..+...+.+++..++...
T Consensus 57 g~~l~~i~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~ 96 (103)
T cd01106 57 GFSLKEIKELLKDPSEDLLEALREQKELLEEKKERLDKLI 96 (103)
T ss_pred CCCHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888887766542222222233333344444443333
No 107
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=35.34 E-value=59 Score=19.07 Aligned_cols=32 Identities=34% Similarity=0.449 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 140 TKGDRIMNEISTLERKGAKLLEENKNLKQKVR 171 (183)
Q Consensus 140 rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~ 171 (183)
+....++-.|..|....-.|..||..|+..+-
T Consensus 14 K~Ns~l~~ki~~le~~~s~L~~en~~lR~~~~ 45 (46)
T PF07558_consen 14 KRNSALSIKIQELENEVSKLLNENVNLRELVL 45 (46)
T ss_dssp ----------------HHHHHHHHHHHHHHHH
T ss_pred hHhHHHHhHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 45566777888898999999999999988763
No 108
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=35.28 E-value=1.1e+02 Score=18.65 Aligned_cols=11 Identities=36% Similarity=0.788 Sum_probs=6.6
Q ss_pred CCCHHHHHHHH
Q 030090 117 GLTIEELQHLE 127 (183)
Q Consensus 117 ~Ls~~eL~~Le 127 (183)
|+|++|+.++-
T Consensus 14 GfsL~eI~~~l 24 (65)
T PF09278_consen 14 GFSLEEIRELL 24 (65)
T ss_dssp T--HHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 47778877776
No 109
>PRK14127 cell division protein GpsB; Provisional
Probab=34.80 E-value=1.4e+02 Score=21.05 Aligned_cols=51 Identities=18% Similarity=0.329 Sum_probs=28.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 113 EDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVR 171 (183)
Q Consensus 113 e~l~~Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~ 171 (183)
..+-|++.+|...+-..+-.-... +..++..|+.....|.+....++.++.
T Consensus 18 ~~~RGYd~~EVD~FLd~V~~dye~--------l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 18 TSMRGYDQDEVDKFLDDVIKDYEA--------FQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456788888888776665543332 233444454444444444444444443
No 110
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=34.33 E-value=3.8e+02 Score=24.82 Aligned_cols=82 Identities=17% Similarity=0.249 Sum_probs=46.8
Q ss_pred HHHhHHHHHHHHHHHHhhcCCCCCCCC-HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 93 YLSLSREIADKSRQLRQMRGEDLHGLT-IEELQHLETMLEQGLS----RVLQTKGDRIMNEISTLERKGAKLLEENKNLK 167 (183)
Q Consensus 93 ~~~Lk~eie~l~~~lr~~~ge~l~~Ls-~~eL~~Le~~Le~~L~----~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~ 167 (183)
..+|+.++++...++-...+..+.-.+ -+.+..++..++.... -+-....+-..+.-..|+..+..+.+.|..+.
T Consensus 123 ~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le 202 (629)
T KOG0963|consen 123 NEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELE 202 (629)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666655555444443322222 1223344444444433 44455555566667778888888888888888
Q ss_pred HHHHHHh
Q 030090 168 QKVRLFD 174 (183)
Q Consensus 168 ~~~~~~~ 174 (183)
.++..++
T Consensus 203 ~ki~~lq 209 (629)
T KOG0963|consen 203 KKISSLQ 209 (629)
T ss_pred HHHHHHH
Confidence 8877664
No 111
>smart00338 BRLZ basic region leucin zipper.
Probab=34.28 E-value=1.1e+02 Score=18.79 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 144 RIMNEISTLERKGAKLLEENKNLKQKV 170 (183)
Q Consensus 144 ll~~~i~~l~~k~~~l~~~n~~L~~~~ 170 (183)
.+..+...|+.+...|..++..|...+
T Consensus 37 ~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 37 QLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666666777776666554
No 112
>PRK13293 F420-0--gamma-glutamyl ligase; Reviewed
Probab=34.25 E-value=38 Score=27.46 Aligned_cols=27 Identities=37% Similarity=0.561 Sum_probs=22.6
Q ss_pred HhhhhhcCcceEEEEecCCCcccccCc
Q 030090 33 EELSVLCDAEVGVIIFSATGKLFESSS 59 (183)
Q Consensus 33 ~ELs~LCd~~vavivfs~~gk~~~~~s 59 (183)
.+|.-.|+++|+|||....|+++-.+.
T Consensus 134 ~~l~~~~g~~v~VIItDt~gr~~R~G~ 160 (245)
T PRK13293 134 EGLEELTGKKVGVIITDTNGRPFRKGQ 160 (245)
T ss_pred HHHHHHHCCCEEEEEEcCCCcccccCC
Confidence 356667899999999999999887665
No 113
>PF14263 DUF4354: Domain of unknown function (DUF4354); PDB: 3NRF_B 3SB3_A.
Probab=33.66 E-value=12 Score=27.00 Aligned_cols=41 Identities=27% Similarity=0.379 Sum_probs=28.6
Q ss_pred ecCCcccccccccccchhhhhHHhhhhhcCcceEEEEecCCCcccc
Q 030090 11 IDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE 56 (183)
Q Consensus 11 Ien~~~R~~Tf~KRr~GL~KKA~ELs~LCd~~vavivfs~~gk~~~ 56 (183)
|.++.....||-=.-..+.++.-+|+.+| ++.|+|.|+-|-
T Consensus 41 v~~k~~ytktF~V~vaN~s~~~idLsk~C-----f~a~~~~gk~f~ 81 (124)
T PF14263_consen 41 VGGKSFYTKTFDVTVANLSDKDIDLSKMC-----FKAYSPDGKEFK 81 (124)
T ss_dssp ETTEEEEEEEEEEEEEE-SSS-EE-TT-E-----EEEEETTS-EEE
T ss_pred ecCccceEEEEEEEEecCCCCccccccch-----hhhccccCCEEE
Confidence 44566667778778888888888999986 999999998664
No 114
>COG1422 Predicted membrane protein [Function unknown]
Probab=33.54 E-value=2.1e+02 Score=22.46 Aligned_cols=47 Identities=9% Similarity=0.160 Sum_probs=26.1
Q ss_pred HHHHHhHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 91 SKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTL 152 (183)
Q Consensus 91 ~~~~~Lk~eie~l~~~lr~~~ge~l~~Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l 152 (183)
.+..+++++..+++++.++..-+ .=..+|+++.+.+.+.+.+|.+-+
T Consensus 72 ekm~~~qk~m~efq~e~~eA~~~---------------~d~~~lkkLq~~qmem~~~Q~elm 118 (201)
T COG1422 72 EKMKELQKMMKEFQKEFREAQES---------------GDMKKLKKLQEKQMEMMDDQRELM 118 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---------------CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666554321 113445666666666666555544
No 115
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=33.24 E-value=3.3e+02 Score=25.47 Aligned_cols=51 Identities=20% Similarity=0.233 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 122 ELQHLETMLEQGLSRVLQTKGDR---IMNEISTLERKGAKLLEENKNLKQKVRL 172 (183)
Q Consensus 122 eL~~Le~~Le~~L~~IR~rK~~l---l~~~i~~l~~k~~~l~~~n~~L~~~~~~ 172 (183)
+|..|+.+-+.-+...+.+...+ ..++++.|+...+.|+.|.+.|.-+++.
T Consensus 5 kL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~ 58 (654)
T PF09798_consen 5 KLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRS 58 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555444444444443 2566788888888888888888766654
No 116
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=32.93 E-value=40 Score=30.12 Aligned_cols=33 Identities=15% Similarity=0.326 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 030090 146 MNEISTLERKGAKLLEENKNLKQKVRLFDLWNH 178 (183)
Q Consensus 146 ~~~i~~l~~k~~~l~~~n~~L~~~~~~~~~~~~ 178 (183)
+++|+.|+++...|+++...|..+|.++.++..
T Consensus 30 ~qkie~L~kql~~Lk~q~~~l~~~v~k~e~~s~ 62 (489)
T PF11853_consen 30 LQKIEALKKQLEELKAQQDDLNDRVDKVEKHSA 62 (489)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccchhhHhhh
Confidence 447888888888888888888888887776554
No 117
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=32.92 E-value=2.2e+02 Score=21.64 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 142 GDRIMNEISTLERKGAKLLEENKNLKQKVRLF 173 (183)
Q Consensus 142 ~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~ 173 (183)
..-..++++.|++.......+...|+++.+..
T Consensus 156 ~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677777777777777777777776654
No 118
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=32.46 E-value=52 Score=20.71 Aligned_cols=29 Identities=14% Similarity=0.493 Sum_probs=19.6
Q ss_pred cCcceEEEEecCCCcccccCc-chhHHHHHH
Q 030090 39 CDAEVGVIIFSATGKLFESSS-SSMKDIIAR 68 (183)
Q Consensus 39 Cd~~vavivfs~~gk~~~~~s-~~v~~vl~R 68 (183)
|+..-.|+|+ |.|..|...+ ..+.+|++.
T Consensus 47 C~~~P~v~i~-~~~~~y~~v~~~~~~~il~~ 76 (77)
T cd02980 47 CGLAPVVVVY-PDGVWYGRVTPEDVEEIVEE 76 (77)
T ss_pred ccCCCEEEEe-CCCeEEccCCHHHHHHHHHh
Confidence 5554555555 6777887777 588888875
No 119
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=32.31 E-value=84 Score=20.95 Aligned_cols=39 Identities=26% Similarity=0.302 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHH
Q 030090 96 LSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSR 136 (183)
Q Consensus 96 Lk~eie~l~~~lr~~~ge~l~~Ls~~eL~~Le~~Le~~L~~ 136 (183)
|+..++.|+.++.+ ..++++-+-..|..|...++..|..
T Consensus 2 L~~~L~~L~~eL~~--~~~ld~~~~~~L~~l~~dIe~~L~~ 40 (85)
T PF14357_consen 2 LQELLEKLHQELEQ--NPPLDEETRAELSSLDDDIEAQLAE 40 (85)
T ss_pred HHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 44555556555554 2345556666666666666666654
No 120
>PF11232 Med25: Mediator complex subunit 25 PTOV activation and synapsin 2; InterPro: IPR021394 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-active part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain, an SD1 - synapsin 1 - domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This family is the combined PTOV and SD2 domains. the PTOV domain being the domain through which Med25 co-operates with the histone acetyltransferase CBP, but the function of the SD2 domain is unclear []. ; PDB: 2KY6_A 2L23_A 2XNF_A 2L6U_A.
Probab=32.24 E-value=50 Score=24.74 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=18.3
Q ss_pred hhcCcceEEEEecCCCcccc-cCc
Q 030090 37 VLCDAEVGVIIFSATGKLFE-SSS 59 (183)
Q Consensus 37 ~LCd~~vavivfs~~gk~~~-~~s 59 (183)
.-|++.|-+++|||.-+.|. |..
T Consensus 109 p~c~iKvL~LlYs~kk~~flG~IP 132 (152)
T PF11232_consen 109 PPCEIKVLMLLYSPKKKAFLGFIP 132 (152)
T ss_dssp SSSS-SEEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEEEEcCCCceEEEEcC
Confidence 57999999999999998775 554
No 121
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR. SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulfur cluster activates SoxR. The physiological role in E. coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In E. coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.
Probab=32.06 E-value=1.4e+02 Score=21.84 Aligned_cols=55 Identities=11% Similarity=0.105 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 117 GLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVR 171 (183)
Q Consensus 117 ~Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~ 171 (183)
++|++++..+-..+...-.........++.++...+..+...|++--..|...+.
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~ki~~L~~~~~~L~~~~~ 111 (142)
T TIGR01950 57 GIPLATIGEALAVLPEGRTPTADDWARLSSQWREELDERIDQLNALRDQLDGCIG 111 (142)
T ss_pred CCCHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788888887665432100001111234445555555555555555555555543
No 122
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=32.01 E-value=48 Score=29.34 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 150 STLERKGAKLLEENKNLKQKVRLF 173 (183)
Q Consensus 150 ~~l~~k~~~l~~~n~~L~~~~~~~ 173 (183)
..|++++..|..+|..|..++..+
T Consensus 289 qeL~kkV~~Le~~N~sLl~qL~kl 312 (472)
T KOG0709|consen 289 QELQKKVEELELSNRSLLAQLKKL 312 (472)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHH
Confidence 345555555555555555555443
No 123
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=31.92 E-value=66 Score=22.10 Aligned_cols=77 Identities=9% Similarity=0.075 Sum_probs=35.7
Q ss_pred HHhhhhhcCcceEEE---------EecCCC-cccccCcchhHHHHHHhhhcccCcccCCCCchHHH-hhHHHHHHhHHHH
Q 030090 32 AEELSVLCDAEVGVI---------IFSATG-KLFESSSSSMKDIIARYNMHSSNISKLNHPSLELQ-LENSKYLSLSREI 100 (183)
Q Consensus 32 A~ELs~LCd~~vavi---------vfs~~g-k~~~~~s~~v~~vl~RY~~~~~~~~~~~~~~~~~q-~~~~~~~~Lk~ei 100 (183)
..|||..||++...| --.++| .-|.|.+.. -.++.+......+.. .+.+...+- .+-.+++.|++++
T Consensus 10 ~~Elc~~~gi~~~~l~eLve~GlIep~~~~~~~~~F~~~~-l~r~~~a~rL~~dl~-in~~gialvl~LLd~i~~Lr~el 87 (101)
T PRK10265 10 ITEFCLHTGVSEEELNEIVGLGVIEPREIQETTWVFDDHA-AIVVQRAVRLRHELA-LDWPGIAVALTLLDEIAHLKQEN 87 (101)
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCeecCCCCcccceECHHH-HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999876554 322232 223344422 233344333322221 111111111 1234566677777
Q ss_pred HHHHHHHHhh
Q 030090 101 ADKSRQLRQM 110 (183)
Q Consensus 101 e~l~~~lr~~ 110 (183)
..+++.++.+
T Consensus 88 ~~L~~~l~~~ 97 (101)
T PRK10265 88 RLLRQRLSRF 97 (101)
T ss_pred HHHHHHHHHH
Confidence 7776666544
No 124
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=31.84 E-value=2.8e+02 Score=22.64 Aligned_cols=45 Identities=13% Similarity=0.234 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030090 126 LETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFD 174 (183)
Q Consensus 126 Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~ 174 (183)
....=..++++-|.+..+.. +.++.+...|..||..|+.+|..+.
T Consensus 198 rr~rNN~A~~kSR~~~k~~~----~e~~~r~~~leken~~lr~~v~~l~ 242 (269)
T KOG3119|consen 198 RRRRNNEAVRKSRDKRKQKE----DEMAHRVAELEKENEALRTQVEQLK 242 (269)
T ss_pred HHHhhhHHHHHhhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344454444333222 5556666677777777776665533
No 125
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=31.28 E-value=2e+02 Score=20.76 Aligned_cols=20 Identities=10% Similarity=0.345 Sum_probs=9.5
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 030090 119 TIEELQHLETMLEQGLSRVL 138 (183)
Q Consensus 119 s~~eL~~Le~~Le~~L~~IR 138 (183)
.+++..++.+.+.+-+..++
T Consensus 76 klDe~~ei~~~i~~eV~~v~ 95 (126)
T PF07889_consen 76 KLDEQKEISKQIKDEVTEVR 95 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34455445444444444443
No 126
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=31.22 E-value=2.2e+02 Score=21.09 Aligned_cols=45 Identities=22% Similarity=0.269 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 122 ELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQ 168 (183)
Q Consensus 122 eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~ 168 (183)
|...|+..-.....+|+.++.+| +++...+-.-++|.+.|..+..
T Consensus 2 ~~~~Le~ek~~~~~rI~~K~~~L--qEL~~Q~va~knLv~RN~~~~~ 46 (142)
T PF08781_consen 2 ECEELEEEKQRRRERIKKKKEQL--QELILQQVAFKNLVQRNRQLEQ 46 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhh
Confidence 56778888888888887666543 4444455556778888877654
No 127
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=31.20 E-value=37 Score=18.35 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=14.1
Q ss_pred cceEEEEecCCCcccccCc
Q 030090 41 AEVGVIIFSATGKLFESSS 59 (183)
Q Consensus 41 ~~vavivfs~~gk~~~~~s 59 (183)
..-.-..|||+|+-..|++
T Consensus 9 ~~~~~p~~SpDGk~i~f~s 27 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTS 27 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEE
T ss_pred ccccCEEEecCCCEEEEEe
Confidence 3556678999999888877
No 128
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=31.13 E-value=1.9e+02 Score=23.37 Aligned_cols=33 Identities=30% Similarity=0.469 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 030090 146 MNEISTLERKGAKLLEENKNLKQKVRLFDLWNH 178 (183)
Q Consensus 146 ~~~i~~l~~k~~~l~~~n~~L~~~~~~~~~~~~ 178 (183)
.+++..|+.....|+.+|..|.++++.++....
T Consensus 106 ~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~~ 138 (248)
T PF08172_consen 106 QQTISSLRREVESLRADNVKLYEKIRYLQSYNN 138 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcc
Confidence 455778888888999999999999998887664
No 129
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=31.00 E-value=1.5e+02 Score=19.12 Aligned_cols=49 Identities=18% Similarity=0.233 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030090 126 LETMLEQGLSRV---LQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFD 174 (183)
Q Consensus 126 Le~~Le~~L~~I---R~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~ 174 (183)
||.+|-.++..+ -.++-+-.......|+..-..-..+|..|..+|..+.
T Consensus 4 LE~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls 55 (70)
T PF04899_consen 4 LEKQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLS 55 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 455555444433 3455556677777777777777777777777776544
No 130
>cd08888 SRPBCC_PITPNA-B_like Lipid-binding SRPBCC domain of mammalian PITPNA, -B, and related proteins (Class I PITPs). This subgroup includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class 1 phosphatidylinositol transfer proteins (PITPs), PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator, and related proteins. These are single domain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. In addition, PITPNB transfers sphingomyelin in vitro, with a low affinity. PITPNA is found chiefly in the nucleus and cy
Probab=30.95 E-value=65 Score=26.32 Aligned_cols=26 Identities=23% Similarity=0.561 Sum_probs=22.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHH
Q 030090 113 EDLHGLTIEELQHLETMLEQGLSRVL 138 (183)
Q Consensus 113 e~l~~Ls~~eL~~Le~~Le~~L~~IR 138 (183)
+.=-+||++|+..+|......|.++|
T Consensus 232 DeW~gltmedIR~~E~~t~~~l~~~~ 257 (258)
T cd08888 232 DKWHGLTMDDIRRMEDETKKELDEMR 257 (258)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 34567999999999999999999887
No 131
>PF05325 DUF730: Protein of unknown function (DUF730); InterPro: IPR007989 This family consists of several uncharacterised Arabidopsis thaliana proteins of unknown function.
Probab=30.93 E-value=32 Score=23.70 Aligned_cols=20 Identities=30% Similarity=0.793 Sum_probs=15.6
Q ss_pred hhhcCcceEEEEecC-----CCccc
Q 030090 36 SVLCDAEVGVIIFSA-----TGKLF 55 (183)
Q Consensus 36 s~LCd~~vavivfs~-----~gk~~ 55 (183)
.|-||+.+.|||-.+ +|++|
T Consensus 20 ~ie~dcnakvvvats~dpvts~kly 44 (122)
T PF05325_consen 20 PIECDCNAKVVVATSRDPVTSGKLY 44 (122)
T ss_pred ceeccCCceEEEEeccCCcccceee
Confidence 588999999999553 57776
No 132
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=30.73 E-value=55 Score=22.59 Aligned_cols=29 Identities=31% Similarity=0.354 Sum_probs=21.4
Q ss_pred hhHHhhhhhcCcceEEEEecCCCcccccCc
Q 030090 30 KKAEELSVLCDAEVGVIIFSATGKLFESSS 59 (183)
Q Consensus 30 KKA~ELs~LCd~~vavivfs~~gk~~~~~s 59 (183)
-|..||--+-|| +|.=.|||+||+.+|-+
T Consensus 3 ekLdeLlqi~Gv-~AAGefs~DGkLv~Ykg 31 (109)
T COG4831 3 EKLDELLQIKGV-MAAGEFSPDGKLVEYKG 31 (109)
T ss_pred hhHHHHhCccce-eEeceeCCCCceEEeeC
Confidence 356667666666 45567999999999877
No 133
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=30.47 E-value=2.5e+02 Score=21.57 Aligned_cols=11 Identities=36% Similarity=0.585 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 030090 159 LLEENKNLKQK 169 (183)
Q Consensus 159 l~~~n~~L~~~ 169 (183)
|...|..|..+
T Consensus 175 lk~~~~ql~~~ 185 (189)
T PF10211_consen 175 LKKQNQQLKAQ 185 (189)
T ss_pred HHHHHHHHHHH
Confidence 33334444433
No 134
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=30.44 E-value=1.8e+02 Score=19.85 Aligned_cols=44 Identities=25% Similarity=0.299 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 129 MLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLF 173 (183)
Q Consensus 129 ~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~ 173 (183)
..+.+...+..++ +.+...+..+..+...+..+-..++.++.++
T Consensus 60 ~~~ea~~~Le~~~-e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 60 EKEEARTELKERL-ETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443333 3446666777777777777777777777665
No 135
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=30.03 E-value=3.6e+02 Score=23.16 Aligned_cols=16 Identities=13% Similarity=0.381 Sum_probs=11.8
Q ss_pred chhHHHHHHhhhcccC
Q 030090 60 SSMKDIIARYNMHSSN 75 (183)
Q Consensus 60 ~~v~~vl~RY~~~~~~ 75 (183)
..++.+.+||......
T Consensus 7 ~kl~~~~~r~~el~~~ 22 (363)
T COG0216 7 EKLESLLERYEELEAL 22 (363)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678889999876543
No 136
>cd01110 HTH_SoxR Helix-Turn-Helix DNA binding domain of the SoxR transcription regulator. Helix-turn-helix (HTH) transcriptional regulator SoxR. The global regulator, SoxR, up-regulates gene expression of another transcription activator, SoxS, which directly stimulates the oxidative stress regulon genes in E. coli. The soxRS response renders the bacterial cell resistant to superoxide-generating agents, macrophage-generated nitric oxide, organic solvents, and antibiotics. The SoxR proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the unusually long spacer between the -35 and -10 promoter elements. They also harbor a regulatory C-terminal domain containing an iron-sulfur center.
Probab=29.79 E-value=2.2e+02 Score=20.63 Aligned_cols=55 Identities=15% Similarity=0.102 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 117 GLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVR 171 (183)
Q Consensus 117 ~Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~ 171 (183)
++|++|+.++-..+...-.........++..+...+..+...|++--..|...+.
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~ 111 (139)
T cd01110 57 GLSLAEIAEALATLPEDRTPTKADWERLSRAWRDRLDERIAELQQLRDQLDGCIG 111 (139)
T ss_pred CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788888876554322100000111123333344444455555554455555543
No 137
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=29.62 E-value=78 Score=15.86 Aligned_cols=15 Identities=40% Similarity=0.454 Sum_probs=9.0
Q ss_pred HHHhHHHHHHHHHHH
Q 030090 93 YLSLSREIADKSRQL 107 (183)
Q Consensus 93 ~~~Lk~eie~l~~~l 107 (183)
+++++..|.+|+.++
T Consensus 3 ~~rlr~rI~dLer~L 17 (23)
T PF04508_consen 3 MNRLRNRISDLERQL 17 (23)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666666666554
No 138
>PRK11637 AmiB activator; Provisional
Probab=29.51 E-value=3.8e+02 Score=23.25 Aligned_cols=49 Identities=18% Similarity=0.282 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 122 ELQHLETMLEQGLSRVLQTKGD--RIMNEISTLERKGAKLLEENKNLKQKV 170 (183)
Q Consensus 122 eL~~Le~~Le~~L~~IR~rK~~--ll~~~i~~l~~k~~~l~~~n~~L~~~~ 170 (183)
+|..++..|...-..|.....+ .+..+|..++.....++++-..++..+
T Consensus 76 ~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 76 QLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555554444333222 334445555555555544444433333
No 139
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=29.34 E-value=2.2e+02 Score=23.69 Aligned_cols=44 Identities=23% Similarity=0.275 Sum_probs=31.5
Q ss_pred ceeeecCCcccccccccccchhhhhHHhhhhhcCcceEEEEecCCCcccccCc-chhHHHHHHhhh
Q 030090 7 KIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSS-SSMKDIIARYNM 71 (183)
Q Consensus 7 ~ik~Ien~~~R~~Tf~KRr~GL~KKA~ELs~LCd~~vavivfs~~gk~~~~~s-~~v~~vl~RY~~ 71 (183)
.+..|.|.+.|..+=|+ .||..|.+ ++| .|=+ |.|++|++.|..
T Consensus 25 n~~li~n~tqr~t~~sR-------------~L~Ecel~---~~p-----~Y~nDpEmK~iid~~n~ 69 (295)
T TIGR01478 25 NVSYIQNNTQMTSTKSR-------------LLAEIQRP---KNP-----HYHNDPELKEIIDKLNE 69 (295)
T ss_pred ceecccCccccccccce-------------ehhhhccc---cCC-----CCCCcHHHHHHHHHHhH
Confidence 45678888888777443 58888875 343 4555 999999998864
No 140
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=29.28 E-value=2e+02 Score=28.27 Aligned_cols=35 Identities=31% Similarity=0.310 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030090 140 TKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFD 174 (183)
Q Consensus 140 rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~ 174 (183)
.|-..|..+.+..+.+-..|++||..|+-.-+.+.
T Consensus 308 qkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~ 342 (1195)
T KOG4643|consen 308 QKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLD 342 (1195)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445667778888888899999988887665544
No 141
>PLN03194 putative disease resistance protein; Provisional
Probab=29.26 E-value=44 Score=25.94 Aligned_cols=30 Identities=20% Similarity=0.130 Sum_probs=22.7
Q ss_pred cCcceEEEEecCCCcccccCcchhHHHHHH
Q 030090 39 CDAEVGVIIFSATGKLFESSSSSMKDIIAR 68 (183)
Q Consensus 39 Cd~~vavivfs~~gk~~~~~s~~v~~vl~R 68 (183)
=.+.++|+||||+=--..||-..+..+++.
T Consensus 79 eeSri~IvVfS~~Ya~S~WCLdEL~~I~e~ 108 (187)
T PLN03194 79 RNCKVGVAVFSPRYCESYFCLHELALIMES 108 (187)
T ss_pred HhCeEEEEEECCCcccchhHHHHHHHHHHc
Confidence 378899999999755556777777777764
No 142
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=29.00 E-value=2.3e+02 Score=20.66 Aligned_cols=45 Identities=22% Similarity=0.341 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHhhcC--CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 030090 96 LSREIADKSRQLRQMRG--EDLHGLTIEELQHLETMLEQGLSRVLQT 140 (183)
Q Consensus 96 Lk~eie~l~~~lr~~~g--e~l~~Ls~~eL~~Le~~Le~~L~~IR~r 140 (183)
+..+++.+-...+...+ -++++++.+||..+...++..-...+.+
T Consensus 71 l~~KLdeLi~~~~~a~n~li~iE~l~~~el~~~~~~~~~~~~~~~~~ 117 (132)
T PF04120_consen 71 LQAKLDELIRAVKEARNELIDIEDLTEEELEEIRKRYERLAEQARER 117 (132)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHhhhh
Confidence 44444544444433222 4899999999999999998865555443
No 143
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=28.84 E-value=3.7e+02 Score=23.01 Aligned_cols=53 Identities=26% Similarity=0.225 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 120 IEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLF 173 (183)
Q Consensus 120 ~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~ 173 (183)
.++|+.--+.|-+.|..+|+ ---.+..+++.|..-.+.+.|||..|+-++.++
T Consensus 101 ~~qL~~qnqkL~nqL~~~~~-vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l 153 (401)
T PF06785_consen 101 SEQLQSQNQKLKNQLFHVRE-VFMKTKGDIQHLEGLIRHLREENQCLQLQLDAL 153 (401)
T ss_pred HHHHHHhHHHHHHHHHHHHH-HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34444444445555555544 111223334444444555566666665555443
No 144
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=28.77 E-value=2.2e+02 Score=20.32 Aligned_cols=55 Identities=20% Similarity=0.326 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 117 GLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRL 172 (183)
Q Consensus 117 ~Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~ 172 (183)
++|++|+.++-...+..-... ..-..++..++..+..+...|+.--..|...+..
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~ 111 (133)
T cd04787 57 GFSLKDIKEILSHADQGESPC-PMVRRLIEQRLAETERRIKELLKLRDRMQQAVSQ 111 (133)
T ss_pred CCCHHHHHHHHhhhccCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488888887755433211111 1123455666666666666666655556555543
No 145
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=28.71 E-value=54 Score=20.13 Aligned_cols=25 Identities=16% Similarity=0.301 Sum_probs=18.9
Q ss_pred EEEecCCCcccccCc-chhHHHHHHh
Q 030090 45 VIIFSATGKLFESSS-SSMKDIIARY 69 (183)
Q Consensus 45 vivfs~~gk~~~~~s-~~v~~vl~RY 69 (183)
+.||-|+|+..+|+. .++.++...-
T Consensus 1 I~v~lpdG~~~~~~~g~T~~d~A~~I 26 (60)
T PF02824_consen 1 IRVYLPDGSIKELPEGSTVLDVAYSI 26 (60)
T ss_dssp EEEEETTSCEEEEETTBBHHHHHHHH
T ss_pred CEEECCCCCeeeCCCCCCHHHHHHHH
Confidence 456779999988888 6677776654
No 146
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=28.70 E-value=33 Score=26.81 Aligned_cols=27 Identities=30% Similarity=0.524 Sum_probs=18.6
Q ss_pred cCcceEEEEecCCCcccccCcchhHHHHHHhhh
Q 030090 39 CDAEVGVIIFSATGKLFESSSSSMKDIIARYNM 71 (183)
Q Consensus 39 Cd~~vavivfs~~gk~~~~~s~~v~~vl~RY~~ 71 (183)
-||.+||+|||.+.+. |.+.+++=|..
T Consensus 91 rgaqa~vLVFSTTDr~------SFea~~~w~~k 117 (246)
T KOG4252|consen 91 RGAQASVLVFSTTDRY------SFEATLEWYNK 117 (246)
T ss_pred ccccceEEEEecccHH------HHHHHHHHHHH
Confidence 4899999999987753 23455555544
No 147
>PLN03237 DNA topoisomerase 2; Provisional
Probab=28.70 E-value=1.6e+02 Score=30.18 Aligned_cols=45 Identities=16% Similarity=0.195 Sum_probs=38.8
Q ss_pred HHHHHhHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHH
Q 030090 91 SKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLS 135 (183)
Q Consensus 91 ~~~~~Lk~eie~l~~~lr~~~ge~l~~Ls~~eL~~Le~~Le~~L~ 135 (183)
.++++|.++++..+.++..+.+....+|..+||..|+..|+....
T Consensus 1126 E~~~kL~~~~~~k~~el~~l~~~t~~~lW~~DLd~f~~~~~~~~~ 1170 (1465)
T PLN03237 1126 EKVQELCADRDKLNIEVEDLKKTTPKSLWLKDLDALEKELDKLDK 1170 (1465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 458889999999999999999888889999999999999987543
No 148
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=28.66 E-value=2.3e+02 Score=21.38 Aligned_cols=11 Identities=18% Similarity=0.537 Sum_probs=5.8
Q ss_pred CCHHHHHHHHH
Q 030090 118 LTIEELQHLET 128 (183)
Q Consensus 118 Ls~~eL~~Le~ 128 (183)
++++++..+-.
T Consensus 59 ~sL~eI~~ll~ 69 (172)
T cd04790 59 VSLEDIRSLLQ 69 (172)
T ss_pred CCHHHHHHHHh
Confidence 55555555443
No 149
>PRK15002 redox-sensitivie transcriptional activator SoxR; Provisional
Probab=27.86 E-value=2e+02 Score=21.36 Aligned_cols=13 Identities=8% Similarity=0.253 Sum_probs=8.9
Q ss_pred CCCHHHHHHHHHH
Q 030090 117 GLTIEELQHLETM 129 (183)
Q Consensus 117 ~Ls~~eL~~Le~~ 129 (183)
++|++|+..+-..
T Consensus 67 G~sL~eIk~ll~~ 79 (154)
T PRK15002 67 GIPLATIGEAFGV 79 (154)
T ss_pred CCCHHHHHHHHHH
Confidence 3777777776654
No 150
>PF14282 FlxA: FlxA-like protein
Probab=27.61 E-value=2.1e+02 Score=19.76 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=25.7
Q ss_pred HHHHHHhHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH
Q 030090 90 NSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETML 130 (183)
Q Consensus 90 ~~~~~~Lk~eie~l~~~lr~~~ge~l~~Ls~~eL~~Le~~L 130 (183)
...+..|+++|..|+..+..+... .+++.++-..-...|
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~--~~~~~e~k~~q~q~L 56 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQD--SDLDAEQKQQQIQLL 56 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc--cCCCHHHHHHHHHHH
Confidence 346888999999999998887653 345555544333333
No 151
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=27.27 E-value=4.4e+02 Score=23.35 Aligned_cols=50 Identities=26% Similarity=0.347 Sum_probs=30.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 115 LHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVR 171 (183)
Q Consensus 115 l~~Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~ 171 (183)
+...++++|..=.-+|++.|..-.+ .-++.|=++-..|..+-..|++++.
T Consensus 176 ~kq~~leQLRre~V~lentlEQEqE-------alvN~LwKrmdkLe~ekr~Lq~KlD 225 (552)
T KOG2129|consen 176 LKQNTLEQLRREAVQLENTLEQEQE-------ALVNSLWKRMDKLEQEKRYLQKKLD 225 (552)
T ss_pred HhhhhHHHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456667766655566655542221 1146666667777777888887773
No 152
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=27.26 E-value=1.5e+02 Score=22.07 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=21.8
Q ss_pred chhhhhHHhhhhhcCcceEEEEecCC
Q 030090 26 RGLFKKAEELSVLCDAEVGVIIFSAT 51 (183)
Q Consensus 26 ~GL~KKA~ELs~LCd~~vavivfs~~ 51 (183)
.-|+++|.+++---++..+|+.|+|.
T Consensus 22 q~Li~~~~~~a~~~~~~~~v~tF~~~ 47 (157)
T PF06574_consen 22 QKLIKKAVEIAKEKGLKSVVLTFDPH 47 (157)
T ss_dssp HHHHHHHHHHHHHCT-EEEEEEESS-
T ss_pred HHHHHHHhhhhhhcccceEEEEcccC
Confidence 35899999999999999999999985
No 153
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=27.24 E-value=6.4e+02 Score=25.22 Aligned_cols=65 Identities=23% Similarity=0.204 Sum_probs=39.5
Q ss_pred HHHhHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 93 YLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRL 172 (183)
Q Consensus 93 ~~~Lk~eie~l~~~lr~~~ge~l~~Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~ 172 (183)
+..|+++++++...+.+..+ .++..++..|+...+-| .+=......+.+.+.+.|..++.+++.
T Consensus 366 irElReEve~lr~qL~~ae~--------~~~~el~e~l~esekli--------~ei~~twEEkl~ktE~in~erq~~L~~ 429 (1714)
T KOG0241|consen 366 IRELREEVEKLREQLEQAEA--------MKLPELKEKLEESEKLI--------KEITVTWEEKLRKTEEINQERQAQLES 429 (1714)
T ss_pred HHHHHHHHHHHHHHHhhhhh--------ccchHHHHHHHHHHHHH--------HHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777776655222 23344555555554422 222355666777788888888888875
Q ss_pred H
Q 030090 173 F 173 (183)
Q Consensus 173 ~ 173 (183)
+
T Consensus 430 ~ 430 (1714)
T KOG0241|consen 430 M 430 (1714)
T ss_pred H
Confidence 3
No 154
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=27.16 E-value=3.6e+02 Score=22.28 Aligned_cols=31 Identities=29% Similarity=0.527 Sum_probs=24.1
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 030090 109 QMRGEDLHGLTIEELQHLETMLEQGLSRVLQ 139 (183)
Q Consensus 109 ~~~ge~l~~Ls~~eL~~Le~~Le~~L~~IR~ 139 (183)
+..-+.|++|+++||.+|-..|-..+..|-+
T Consensus 210 ~~SrEeL~~Mt~~EL~qL~~~L~~qIq~vfe 240 (285)
T PF06937_consen 210 HYSREELNSMTLDELKQLNEKLLQQIQDVFE 240 (285)
T ss_pred ccCHHHhhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 3334679999999999999998877766643
No 155
>COG1422 Predicted membrane protein [Function unknown]
Probab=27.14 E-value=3.1e+02 Score=21.55 Aligned_cols=49 Identities=14% Similarity=0.350 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 120 IEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQ 168 (183)
Q Consensus 120 ~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~ 168 (183)
-+.+..+.+...+--...++.+.+--+..++.|+.+.....+.+..|.+
T Consensus 71 ~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk 119 (201)
T COG1422 71 QEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMK 119 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555445555555544456667777777776666655554
No 156
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=27.02 E-value=3.8e+02 Score=22.52 Aligned_cols=28 Identities=25% Similarity=0.518 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 145 IMNEISTLERKGAKLLEENKNLKQKVRL 172 (183)
Q Consensus 145 l~~~i~~l~~k~~~l~~~n~~L~~~~~~ 172 (183)
+..+|-.++++.+.+--||..|...+..
T Consensus 239 LlsqivdlQ~r~k~~~~EnEeL~q~L~~ 266 (306)
T PF04849_consen 239 LLSQIVDLQQRCKQLAAENEELQQHLQA 266 (306)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4566666777777777777777777654
No 157
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=26.95 E-value=3.5e+02 Score=22.02 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 144 RIMNEISTLERKGAKLLEENKNLKQKVR 171 (183)
Q Consensus 144 ll~~~i~~l~~k~~~l~~~n~~L~~~~~ 171 (183)
.+..+-+.|+.+.+.|..+|..|...++
T Consensus 108 ~L~~en~~Lr~~n~~L~~~n~el~~~le 135 (292)
T KOG4005|consen 108 ILQNENDSLRAINESLLAKNHELDSELE 135 (292)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4444555555555555555555555444
No 158
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=26.82 E-value=4.6e+02 Score=23.39 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 134 LSRVLQTKGDRIMNEISTLERKGAKLLEENKNLK 167 (183)
Q Consensus 134 L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~ 167 (183)
...+-++|.+.+...+..+++....+.|+|+.|.
T Consensus 376 ~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~ 409 (493)
T KOG0804|consen 376 EKKIVERKLQQLQTKLKKCQKELKEEREENKKLI 409 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666777777677777776665
No 159
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=26.78 E-value=2.3e+02 Score=19.87 Aligned_cols=56 Identities=16% Similarity=0.223 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 117 GLTIEELQHLETMLEQGLSRV--LQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRL 172 (183)
Q Consensus 117 ~Ls~~eL~~Le~~Le~~L~~I--R~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~ 172 (183)
++|++++..+-...+..-... .....+++.+++..+..+...|++--..|...+..
T Consensus 55 G~~L~~I~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~ 112 (118)
T cd04776 55 GFSLEEIRELLDLYDPPGGNRKQLEKMLEKIEKRRAELEQQRRDIDAALAELDAAEER 112 (118)
T ss_pred CCCHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777776655433221111 11223455666666666666665555555555543
No 160
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=26.77 E-value=2.3e+02 Score=19.94 Aligned_cols=52 Identities=17% Similarity=0.309 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 117 GLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVR 171 (183)
Q Consensus 117 ~Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~ 171 (183)
++|++|+..+-...+. ..+ ..-..++..++..++.+...|..-...|...+.
T Consensus 56 G~sl~eI~~~l~~~~~--~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 107 (124)
T TIGR02051 56 GFSLEEIGGLLGLVDG--THC-REMYELASRKLKSVQAKMADLLRIERLLEELLE 107 (124)
T ss_pred CCCHHHHHHHHhcccC--CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777777776543321 001 111234455555555555555555555555443
No 161
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=26.75 E-value=3.1e+02 Score=21.41 Aligned_cols=52 Identities=25% Similarity=0.280 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 120 IEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRL 172 (183)
Q Consensus 120 ~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~ 172 (183)
+++|..+-..|+..=+.+-+ ....+..+...|-.+...|+++|..|......
T Consensus 69 ledLk~~~~~lEE~~~~L~a-q~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~ 120 (193)
T PF14662_consen 69 LEDLKTLAKSLEEENRSLLA-QARQLEKEQQSLVAEIETLQEENGKLLAERDG 120 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Confidence 45555566666655444432 22334455566666666677777666655543
No 162
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=26.74 E-value=2e+02 Score=19.29 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 117 GLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENK 164 (183)
Q Consensus 117 ~Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~ 164 (183)
.||.++-..||..+.. ++..+....++-+.|+.||.
T Consensus 32 eLs~e~R~~lE~E~~~------------l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 32 ELSPEARRSLEKELNE------------LKEKLENNEKELKLLRKENR 67 (85)
T ss_pred CCChHHHHHHHHHHHH------------HHHHhhccHHHHHHHHHhhh
Confidence 4788888888855444 34555667777777777884
No 163
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=26.62 E-value=60 Score=19.11 Aligned_cols=25 Identities=16% Similarity=0.434 Sum_probs=19.7
Q ss_pred EEEecCCCcccccCc-chhHHHHHHh
Q 030090 45 VIIFSATGKLFESSS-SSMKDIIARY 69 (183)
Q Consensus 45 vivfs~~gk~~~~~s-~~v~~vl~RY 69 (183)
+.||-|+|..++++. .++.+++...
T Consensus 1 ~~~~~~~g~~~~~~~~~t~~~~~~~~ 26 (60)
T cd01668 1 IYVFTPKGEIIELPAGATVLDFAYAI 26 (60)
T ss_pred CEEECCCCCEEEcCCCCCHHHHHHHH
Confidence 368999999999987 5788877643
No 164
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=26.57 E-value=2e+02 Score=19.09 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030090 147 NEISTLERKGAKLLEENKNLKQKVRLFD 174 (183)
Q Consensus 147 ~~i~~l~~k~~~l~~~n~~L~~~~~~~~ 174 (183)
+.|+.-+.....|..+|..|+.-|..+.
T Consensus 37 ~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm 64 (80)
T PF10224_consen 37 DRVEEVKEENEKLESENEYLQQYIGNLM 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555556677788888887776654
No 165
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=26.50 E-value=23 Score=23.65 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=19.1
Q ss_pred HHhhhhhcCcceEEEEecCCCccc
Q 030090 32 AEELSVLCDAEVGVIIFSATGKLF 55 (183)
Q Consensus 32 A~ELs~LCd~~vavivfs~~gk~~ 55 (183)
+.-++|-||++=++|-+|.+|.+|
T Consensus 16 ~tS~~Vs~~~~gs~ValS~dg~l~ 39 (81)
T PF03785_consen 16 QTSISVSCDVPGSYVALSQDGDLY 39 (81)
T ss_dssp -SEEEEEESSTT-EEEEEETTEEE
T ss_pred ccEEEEEecCCCcEEEEecCCEEE
Confidence 345789999999999999999876
No 166
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=26.49 E-value=18 Score=22.81 Aligned_cols=30 Identities=37% Similarity=0.554 Sum_probs=22.1
Q ss_pred cccchhhhhHHhhhhhcC-cceEEEEecCCCcc
Q 030090 23 KRRRGLFKKAEELSVLCD-AEVGVIIFSATGKL 54 (183)
Q Consensus 23 KRr~GL~KKA~ELs~LCd-~~vavivfs~~gk~ 54 (183)
.||.|.+.+ |.|+-+| .+=.|-|++.+|++
T Consensus 24 ~RR~g~i~~--~vsi~~~~~~~ei~I~tD~GR~ 54 (63)
T PF04566_consen 24 LRRSGKISK--EVSIVYDIREKEIRINTDAGRL 54 (63)
T ss_dssp HHHTTSS-T--TSEEEEETTTTEEEEE-SSCEE
T ss_pred HhhccCCcc--eeEEEEeccCCEEEEEccCCcc
Confidence 578886665 8888885 57888999999975
No 167
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=26.29 E-value=2.2e+02 Score=19.49 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 117 GLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQ 168 (183)
Q Consensus 117 ~Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~ 168 (183)
++++.++..+-..... ..-..++..++..+..+...++..-..|..
T Consensus 58 G~sl~~i~~l~~~~~~------~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 103 (108)
T cd01107 58 GFPLEEIKEILDADND------DELRKLLREKLAELEAEIEELQRILRLLED 103 (108)
T ss_pred CCCHHHHHHHHhcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778887776655442 222334444444444444444444343333
No 168
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=26.05 E-value=5.1e+02 Score=23.68 Aligned_cols=71 Identities=11% Similarity=0.015 Sum_probs=32.4
Q ss_pred hhhhcCcceEEEEecCCCcccccCc----chhHHHHHHhhhcccCcccCCCCchHHHhhHHHHHHhHHHHHHHHHHHHh
Q 030090 35 LSVLCDAEVGVIIFSATGKLFESSS----SSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQ 109 (183)
Q Consensus 35 Ls~LCd~~vavivfs~~gk~~~~~s----~~v~~vl~RY~~~~~~~~~~~~~~~~~q~~~~~~~~Lk~eie~l~~~lr~ 109 (183)
..+.|+-.+|-+.|+..--.+.+.- ..|.++|--++......-...... .....+.+|..+++.++...+.
T Consensus 404 ~~t~v~~~la~~~~st~~~~~~~d~~~~~~km~~~i~~~~~~~~sd~~~~rer----~l~a~t~kL~~E~e~~q~~~~~ 478 (588)
T KOG3612|consen 404 KLTQVSKMLADLHYSTQLGGVHADPTVVEDKMKDAIIDLQESTLSDYSGSRER----SLVAATEKLRQEFEELQQTSRR 478 (588)
T ss_pred hhcccchhhhhcccccccCCcccchHHHHHHHHHHHHHHHHHHHHHhhcCCcc----chHHHHHHHHHHHHHHHHHHhh
Confidence 4566777777666665544444333 344444443332111100000000 0134466677777666655433
No 169
>PF04945 YHS: YHS domain; InterPro: IPR007029 This short presumed domain is about 50 amino acid residues long. It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0 from SWISSPROT. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.; PDB: 3U52_B 2INN_A 2INP_B 1T0Q_A 2RDB_A 1T0R_A 2IND_A 1T0S_A 2INC_A 3DHI_A ....
Probab=26.02 E-value=56 Score=18.85 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=17.7
Q ss_pred cCcce---EEEEecCCCcccccCcchhHHHH
Q 030090 39 CDAEV---GVIIFSATGKLFESSSSSMKDII 66 (183)
Q Consensus 39 Cd~~v---avivfs~~gk~~~~~s~~v~~vl 66 (183)
|+..| +-.-..=.|+.|-|+|+.=.+++
T Consensus 6 cg~~v~~~~~~~~~y~G~~Y~FCS~~C~~~F 36 (47)
T PF04945_consen 6 CGMKVPGNAAYSVEYNGRTYYFCSEGCKEKF 36 (47)
T ss_dssp GG-BE-----EEEEETTEEEEESSHHHHHHH
T ss_pred CCCEEccCccEEEEECCEEEEEcCHHHHHHH
Confidence 66666 55556668999999996544444
No 170
>PF09158 MotCF: Bacteriophage T4 MotA, C-terminal; InterPro: IPR015241 Transcription factor MotA is required for the activation of middle promoters in Bacteriophage T4, in addition to phage T4 co-activator AsiA, and sigma-70-containing Escherichia coli RNA polymerase. Phage T4 middle promoters have the sigma70 -10 DNA element, but not the -35 element; instead, they have a MotA box at -30 to which the transcription factor MotA binds []. MotA and AsiA interact with the C-terminal of sigma70 (region 4), which normally binds the -35 element and the beta-flap, thereby diverting sigma70 away from host promoters that require -35 element-binding to phage T4 middle promoters. Transcription factor MotA has two domains: an N-terminal domain required for binding to sigma70, and a C-terminal domain required for binding to the -30 MotA box element in the phage T4 middle promoter. This entry represents the C-terminal domain of MotA factors, which adopts a compact alpha/beta structure comprising three alpha-helices and six beta-strands in the order: alpha1-beta1-beta2-beta3-beta4-alpha2-beta5-beta6-alpha3. In this architecture, the domain's hydrophobic core is at the sheet-helix interface, and the second surface of the beta-sheet is completely exposed. It contains a DNA-binding motif, with a consensus sequence containing nine base pairs (5'-TTTGCTTTA-3'), that appears to bind to various mot boxes, allowing access to the minor groove towards the 5'-end of this sequence and the major groove towards the 3'-end [].; PDB: 1KAF_B.
Probab=25.91 E-value=25 Score=24.53 Aligned_cols=53 Identities=19% Similarity=0.359 Sum_probs=33.1
Q ss_pred ccceeee-cCCcccccccccccchhhhhHHhhhhhcCcceEEEEecCCCcccccCcchhHHHHHHhhhc
Q 030090 5 KIKIRKI-DNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMH 72 (183)
Q Consensus 5 Ki~ik~I-en~~~R~~Tf~KRr~GL~KKA~ELs~LCd~~vavivfs~~gk~~~~~s~~v~~vl~RY~~~ 72 (183)
++++|-+ +|.++=.++|+||-.|+-+ +=....|..-.|+-.-.++++..|...
T Consensus 19 ~ie~K~~~~~RSN~~i~f~KRt~Girq---------------fEi~n~G~~RI~gYk~se~~~~~f~sl 72 (103)
T PF09158_consen 19 KIEVKEIVIDRSNYEIRFKKRTKGIRQ---------------FEIRNKGEFRIFGYKMSEEIIKKFTSL 72 (103)
T ss_dssp T--EEEEEEETTEEEEEEEEEETTEEE---------------EEEETTSEEEEEEES--HHHHHHHHHT
T ss_pred ceeeeeeEeeccceEEeeecccCceeE---------------EEEecCCcEEEEEEcCCHHHHHHHHhc
Confidence 4677766 7889999999999998742 223345655555555556666666553
No 171
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=25.83 E-value=2.5e+02 Score=24.00 Aligned_cols=47 Identities=26% Similarity=0.340 Sum_probs=0.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 112 GEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRL 172 (183)
Q Consensus 112 ge~l~~Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~ 172 (183)
+..+++.|++|+-.|... +..+..+++.|+.+...| ||..++..|.+
T Consensus 23 ~~~~~~~~~~e~~aLr~E------------N~~LKkEN~~Lk~eVerL--E~e~l~s~V~E 69 (420)
T PF07407_consen 23 NHELEGVSIDENFALRME------------NHSLKKENNDLKIEVERL--ENEMLRSHVCE 69 (420)
T ss_pred cccccccchhhhhhHHHH------------hHHHHHHHHHHHHHHHHH--HHHhhhhhhhh
No 172
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=25.74 E-value=43 Score=26.59 Aligned_cols=19 Identities=26% Similarity=0.553 Sum_probs=15.4
Q ss_pred hcCcceEEEEecCCCcccc
Q 030090 38 LCDAEVGVIIFSATGKLFE 56 (183)
Q Consensus 38 LCd~~vavivfs~~gk~~~ 56 (183)
..|-|-.+.||||.|++|.
T Consensus 6 ~agfDrhitIFspeGrLyQ 24 (246)
T KOG0182|consen 6 SAGFDRHITIFSPEGRLYQ 24 (246)
T ss_pred cCCccceEEEECCCceEEe
Confidence 3466778999999999874
No 173
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=25.54 E-value=64 Score=23.86 Aligned_cols=25 Identities=20% Similarity=0.109 Sum_probs=19.8
Q ss_pred hhhhcCcceEEEEecCCCcccccCc
Q 030090 35 LSVLCDAEVGVIIFSATGKLFESSS 59 (183)
Q Consensus 35 Ls~LCd~~vavivfs~~gk~~~~~s 59 (183)
+++-|||++-+++.+.+.....||.
T Consensus 58 i~ta~dad~V~ll~dat~~~~~~pP 82 (143)
T PF10662_consen 58 IVTAQDADVVLLLQDATEPRSVFPP 82 (143)
T ss_pred HHHHhhCCEEEEEecCCCCCccCCc
Confidence 6888999999999998876555543
No 174
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=25.44 E-value=1.7e+02 Score=24.41 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030090 135 SRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFD 174 (183)
Q Consensus 135 ~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~ 174 (183)
+..|.+| .+.|..|..++..|+.+|+.|-+++..+.
T Consensus 304 RECRRKK----KEYVKCLENRVAVLENQNKaLIEELKtLK 339 (348)
T KOG3584|consen 304 RECRRKK----KEYVKCLENRVAVLENQNKALIEELKTLK 339 (348)
T ss_pred HHHHHhH----hHHHHHHHhHHHHHhcccHHHHHHHHHHH
Confidence 4455444 35578999999999999999999887654
No 175
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=25.19 E-value=44 Score=29.08 Aligned_cols=58 Identities=21% Similarity=0.244 Sum_probs=43.9
Q ss_pred eeeecCCcccccccccccchhhhhHHhhhhhcCcceEEEEecCCCcccccCc-chhHHHHHHhhh
Q 030090 8 IRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSS-SSMKDIIARYNM 71 (183)
Q Consensus 8 ik~Ien~~~R~~Tf~KRr~GL~KKA~ELs~LCd~~vavivfs~~gk~~~~~s-~~v~~vl~RY~~ 71 (183)
|+.+-+...-..||.+|+.| |++.+||..+-+.||....-...|+. .-+...-+-|+.
T Consensus 18 i~~~~d~~~ps~~~~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~q~~a~~q~ 76 (412)
T COG5068 18 IQGDSDANIPSNTINRLSPG------ELSQQNDGKFDVMIFDSKHSVRVYSNEEPIEQTKAQLQK 76 (412)
T ss_pred cccccccCCccccccccCcc------cchhhccCCcccccccccccccccCCcccccccHHHHhh
Confidence 77788888888999999999 99999999988888877666666666 334444444443
No 176
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=25.18 E-value=3.7e+02 Score=21.73 Aligned_cols=21 Identities=19% Similarity=0.196 Sum_probs=13.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 030090 118 LTIEELQHLETMLEQGLSRVL 138 (183)
Q Consensus 118 Ls~~eL~~Le~~Le~~L~~IR 138 (183)
.+.+++..|...++.+-.++.
T Consensus 86 ~~~~e~~aL~~E~~~ak~r~~ 106 (239)
T COG1579 86 KDERELRALNIEIQIAKERIN 106 (239)
T ss_pred ccHHHHHHHHHHHHHHHHHHH
Confidence 557777777777766655444
No 177
>KOG4311 consensus Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=25.15 E-value=96 Score=25.67 Aligned_cols=57 Identities=21% Similarity=0.362 Sum_probs=39.5
Q ss_pred cccccccccccchh---------hhhHHhhhhhcCcceEEEEecCCCcc-------cccCc-----chhHHHHHHhhh
Q 030090 15 TARQVTFSKRRRGL---------FKKAEELSVLCDAEVGVIIFSATGKL-------FESSS-----SSMKDIIARYNM 71 (183)
Q Consensus 15 ~~R~~Tf~KRr~GL---------~KKA~ELs~LCd~~vavivfs~~gk~-------~~~~s-----~~v~~vl~RY~~ 71 (183)
+.+-|-||+-|..| +-+.-.++|-||-|.-+.+.-|+|+- ..|+. -+++.+|..-.+
T Consensus 180 ~g~gvy~SRsR~~lW~KGetSgn~q~ll~i~vDCD~D~l~f~v~q~g~gfCHl~t~~Cfg~~~~gL~~LEs~l~~Rk~ 257 (359)
T KOG4311|consen 180 SGKGVYFSRSRSTLWTKGETSGNFQNLLDIYVDCDRDSLIFLVTQDGPGFCHLGTETCFGTSVFGLYSLESILSKRKE 257 (359)
T ss_pred cCcceEEecccceeeeccccCcCceeeEEEeeccCccceEEEEecCCCcccccCcceeeeeechhhhhHHHHHHHhhh
Confidence 45667778777744 45556899999999998888888873 22443 377888754443
No 178
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=24.95 E-value=1.4e+02 Score=30.39 Aligned_cols=45 Identities=22% Similarity=0.395 Sum_probs=37.0
Q ss_pred HHHHHhHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHH
Q 030090 91 SKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLS 135 (183)
Q Consensus 91 ~~~~~Lk~eie~l~~~lr~~~ge~l~~Ls~~eL~~Le~~Le~~L~ 135 (183)
.++++|.++++.++.++..+......+|..+||..|+..++....
T Consensus 1102 e~v~kL~~e~~~~~~e~~~L~~~t~~~lw~~DL~~~~~~~~~~~~ 1146 (1388)
T PTZ00108 1102 EKVEKLNAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEE 1146 (1388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888888888888888888889999998888887543
No 179
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=24.93 E-value=2.7e+02 Score=20.13 Aligned_cols=54 Identities=20% Similarity=0.245 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 117 GLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKV 170 (183)
Q Consensus 117 ~Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~ 170 (183)
++|++|+..+-......-...-.....++.+++..+.++...|.+-...|...+
T Consensus 58 G~sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 111 (140)
T PRK09514 58 GFTLEEIRELLSIRLDPEHHTCQEVKGIVDEKLAEVEAKIAELQHMRRSLQRLN 111 (140)
T ss_pred CCCHHHHHHHHHhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777777654321100000011123444445555555555544444444443
No 180
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=24.85 E-value=57 Score=22.69 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=16.1
Q ss_pred hHHhhhhhcCcceEEEEecCCCc
Q 030090 31 KAEELSVLCDAEVGVIIFSATGK 53 (183)
Q Consensus 31 KA~ELs~LCd~~vavivfs~~gk 53 (183)
=|.+++.-++|+ ++|||+.+|.
T Consensus 7 aa~~~A~~~~ak-~Ivv~T~sG~ 28 (117)
T PF02887_consen 7 AAVELAEDLNAK-AIVVFTESGR 28 (117)
T ss_dssp HHHHHHHHHTES-EEEEE-SSSH
T ss_pred HHHHHHHhcCCC-EEEEECCCch
Confidence 366777778866 6888999986
No 181
>PF04873 EIN3: Ethylene insensitive 3; InterPro: IPR006957 Ethylene insensitive 3 (EIN3) proteins are a family of plant DNA-binding proteins that regulate transcription in response to the gaseous plant hormone ethylene, and are essential for ethylene-mediated responses. In the presence of ethylene, dark-grown dicotyledonous seedlings undergo dramatic morphological changes collectively known as the 'triple response'. In Arabidopsis, these changes consist of a radial swelling of the hypocotyl, an exaggeration in the curvature of the apical hook, and the inhibition of cell elongation in the hypocotyl and root.; GO: 0005634 nucleus; PDB: 1WIJ_A.
Probab=24.79 E-value=24 Score=30.13 Aligned_cols=42 Identities=33% Similarity=0.409 Sum_probs=0.0
Q ss_pred ccccchhhhhHHhhhhhcCcceEE-EEecCCCcccccCcchhH
Q 030090 22 SKRRRGLFKKAEELSVLCDAEVGV-IIFSATGKLFESSSSSMK 63 (183)
Q Consensus 22 ~KRr~GL~KKA~ELs~LCd~~vav-ivfs~~gk~~~~~s~~v~ 63 (183)
+.=-+||+|=+.=..-+|+|..+| -+.+..||+.+|+|+++.
T Consensus 50 s~aqd~ilkym~~~m~~~n~~gfvy~~~~~~~k~~~~~s~slr 92 (354)
T PF04873_consen 50 SRAQDGILKYMFPEMELCNAPGFVYTIISSSGKPVEGVSPSLR 92 (354)
T ss_dssp -------------------------------------------
T ss_pred hhhhhHHHHhhccccccccCceeeecCCCCCCCccCCcCCccc
Confidence 333467777777778999999999 888999999999998887
No 182
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=24.37 E-value=32 Score=23.94 Aligned_cols=48 Identities=31% Similarity=0.478 Sum_probs=30.0
Q ss_pred CCccccceeeecCCcccccccccccchhhhh-------HHhhhhhcCc----ceEEEEecCCCcccccC
Q 030090 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKK-------AEELSVLCDA----EVGVIIFSATGKLFESS 58 (183)
Q Consensus 1 mgR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KK-------A~ELs~LCd~----~vavivfs~~gk~~~~~ 58 (183)
|||++...+.|-. |+.--+.| -+|.++.|-+ -+|+++.+..|--|++-
T Consensus 1 MG~rr~krr~~ik----------~~~~~L~k~FtCp~Cghe~vs~ctvkk~~~~g~~~Cg~CGls~e~e 59 (104)
T COG4888 1 MGRRRRKRRKIIK----------RRPQVLPKTFTCPRCGHEKVSSCTVKKTVNIGTAVCGNCGLSFECE 59 (104)
T ss_pred CCcccccccccCc----------ccCccCCceEecCccCCeeeeEEEEEecCceeEEEcccCcceEEEe
Confidence 9999988887742 22222222 2566776644 46777788888766543
No 183
>PRK09555 feoA ferrous iron transport protein A; Reviewed
Probab=24.27 E-value=93 Score=20.11 Aligned_cols=33 Identities=15% Similarity=0.154 Sum_probs=28.9
Q ss_pred chhhhhHHhhhhhcCcceEEEEecCCCcccccC
Q 030090 26 RGLFKKAEELSVLCDAEVGVIIFSATGKLFESS 58 (183)
Q Consensus 26 ~GL~KKA~ELs~LCd~~vavivfs~~gk~~~~~ 58 (183)
.++..+-.++-++.|++|-|+-.+|.|.|..+.
T Consensus 20 ~~~~~rL~~mGl~pG~~V~v~~~aP~gdPi~i~ 52 (74)
T PRK09555 20 PAYRQKLLSLGMLPGSSFNVVRVAPLGDPIHIE 52 (74)
T ss_pred hHHHHHHHHcCCCCCCEEEEEEECCCCCCEEEE
Confidence 558889999999999999999999999887653
No 184
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=24.02 E-value=2.2e+02 Score=19.48 Aligned_cols=48 Identities=17% Similarity=0.192 Sum_probs=23.3
Q ss_pred HHHHHhHHHHHHHHHHHHhhc-----CCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 030090 91 SKYLSLSREIADKSRQLRQMR-----GEDLHGLTIEELQHLETMLEQGLSRVLQ 139 (183)
Q Consensus 91 ~~~~~Lk~eie~l~~~lr~~~-----ge~l~~Ls~~eL~~Le~~Le~~L~~IR~ 139 (183)
.++++|+.++..+...--... --.|.++.++|- +|...++..-.+.|.
T Consensus 10 ~eI~kLqe~lk~~e~keAERigRiAlKAGLgeieI~d~-eL~~aFeeiAaRFR~ 62 (98)
T PRK13848 10 EEIAKLQEQLKQAETREAERIGRIALKAGLGEIEIEEA-ELQAAFEELAKRFRG 62 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCHH-HHHHHHHHHHHHHhc
Confidence 456667766665554322222 235555555442 334445554455443
No 185
>cd04788 HTH_NolA-AlbR Helix-Turn-Helix DNA binding domain of the transcription regulators NolA and AlbR. Helix-turn-helix (HTH) transcription regulators NolA and AlbR, N-terminal domain. In Bradyrhizobium (Arachis) sp. NC92, NolA is required for efficient nodulation of host plants. In Xanthomonas albilineans, AlbR regulates the expression of the pathotoxin, albicidin. These proteins are putatively comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=24.02 E-value=2e+02 Score=19.27 Aligned_cols=13 Identities=15% Similarity=0.304 Sum_probs=8.5
Q ss_pred CCCHHHHHHHHHH
Q 030090 117 GLTIEELQHLETM 129 (183)
Q Consensus 117 ~Ls~~eL~~Le~~ 129 (183)
+++++|+..+-..
T Consensus 57 G~~l~eI~~~l~~ 69 (96)
T cd04788 57 GFSLREIGRALDG 69 (96)
T ss_pred CCCHHHHHHHHhC
Confidence 4777777776543
No 186
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=23.64 E-value=3.7e+02 Score=23.82 Aligned_cols=11 Identities=18% Similarity=0.398 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 030090 127 ETMLEQGLSRV 137 (183)
Q Consensus 127 e~~Le~~L~~I 137 (183)
...++.||..|
T Consensus 15 deEik~Al~Gv 25 (436)
T PF01093_consen 15 DEEIKNALNGV 25 (436)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 187
>cd04768 HTH_BmrR-like Helix-Turn-Helix DNA binding domain of BmrR-like transcription regulators. Helix-turn-helix (HTH) BmrR-like transcription regulators (TipAL, Mta, SkgA, BmrR, and BltR), N-terminal domain. These proteins have been shown to regulate expression of specific regulons in response to various toxic substances, antibiotics, or oxygen radicals in Bacillus subtilis, Streptomyces, and Caulobacter crescentus. They are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=23.53 E-value=2.4e+02 Score=18.89 Aligned_cols=13 Identities=23% Similarity=0.560 Sum_probs=7.9
Q ss_pred CCCHHHHHHHHHH
Q 030090 117 GLTIEELQHLETM 129 (183)
Q Consensus 117 ~Ls~~eL~~Le~~ 129 (183)
+++++++..+-..
T Consensus 57 G~~l~~I~~~l~~ 69 (96)
T cd04768 57 GFSLAEIKELLDT 69 (96)
T ss_pred CCCHHHHHHHHhc
Confidence 3677777665543
No 188
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=23.41 E-value=3.6e+02 Score=21.03 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 145 IMNEISTLERKGAKLLEENKNLKQKVRL 172 (183)
Q Consensus 145 l~~~i~~l~~k~~~l~~~n~~L~~~~~~ 172 (183)
+..+.+.++++-..|..++..|+.+|-.
T Consensus 114 l~~e~~~lk~~~~eL~~~~~~Lq~Ql~~ 141 (193)
T PF14662_consen 114 LLAERDGLKKRSKELATEKATLQRQLCE 141 (193)
T ss_pred HHHhhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 3455666666667776677777766643
No 189
>PRK09822 lipopolysaccharide core biosynthesis protein; Provisional
Probab=23.32 E-value=38 Score=27.37 Aligned_cols=39 Identities=23% Similarity=0.416 Sum_probs=28.1
Q ss_pred ccccc-cchhhhhHHhhhhhcCcc---eEEEEecCCCcccccCc
Q 030090 20 TFSKR-RRGLFKKAEELSVLCDAE---VGVIIFSATGKLFESSS 59 (183)
Q Consensus 20 Tf~KR-r~GL~KKA~ELs~LCd~~---vavivfs~~gk~~~~~s 59 (183)
+|.+| +.|++||.. +..||+.+ |+-|.||+.++.+-|+.
T Consensus 118 ~~~~~~~~~~~~~~~-~~~L~~~~~~l~~~v~fS~~~r~IGFSk 160 (269)
T PRK09822 118 SFYRREKGGFLKKIK-FNILKRVHKALLISVPLSKRGRLAGFCK 160 (269)
T ss_pred hhhhhccCchhhhhH-HHHHhhhhhhhEEEeeccccCCceeeee
Confidence 45555 778888874 78888655 45556999998877765
No 190
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=23.10 E-value=2.8e+02 Score=24.65 Aligned_cols=46 Identities=28% Similarity=0.268 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 126 LETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVR 171 (183)
Q Consensus 126 Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~ 171 (183)
|-+++...-.=|+..|...-++++++|....+.|++|-..++.++.
T Consensus 453 l~EQi~~I~~~I~qAka~~k~eEv~TLe~NLreL~~Ei~~~q~k~~ 498 (505)
T KOG1842|consen 453 LYEQIFLIESFIEQAKAKRKFEEVETLESNLRELHEEIHSIQEKIH 498 (505)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3355555555666677777799999999999999999988888774
No 191
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=23.07 E-value=2.8e+02 Score=19.59 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030090 144 RIMNEISTLERKGAKLLEENKNLKQKVRLFD 174 (183)
Q Consensus 144 ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~ 174 (183)
.+..++..|++....+.+||..|+-..+.+.
T Consensus 19 ~l~~el~~lK~~l~~lvEEN~~L~lENe~LR 49 (114)
T COG4467 19 VLLAELGGLKQHLGSLVEENTALRLENEKLR 49 (114)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHhhHHHHH
Confidence 4567889999999999999999998877665
No 192
>PF13252 DUF4043: Protein of unknown function (DUF4043)
Probab=23.07 E-value=42 Score=28.54 Aligned_cols=29 Identities=28% Similarity=0.220 Sum_probs=21.9
Q ss_pred hHHhhhhhcCcceEEEEecC--CCcccccCc
Q 030090 31 KAEELSVLCDAEVGVIIFSA--TGKLFESSS 59 (183)
Q Consensus 31 KA~ELs~LCd~~vavivfs~--~gk~~~~~s 59 (183)
.+-.-++|||+.++++.|+. +|-.|.|..
T Consensus 270 ~~v~ralLlGaQA~~~A~G~~~~~~~~~w~E 300 (341)
T PF13252_consen 270 VAVARALLLGAQALVIAFGKSGSGMRFFWVE 300 (341)
T ss_pred cceeeeeeechhheeeeeeccCCCcccccch
Confidence 34456789999999999998 455666753
No 193
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=23.07 E-value=81 Score=20.99 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=21.0
Q ss_pred hhhhHHhhhhhc----CcceEEEEecCCCcc
Q 030090 28 LFKKAEELSVLC----DAEVGVIIFSATGKL 54 (183)
Q Consensus 28 L~KKA~ELs~LC----d~~vavivfs~~gk~ 54 (183)
+|+.|.+++-.. ...|+-+|++|+|+.
T Consensus 7 ~m~~a~~~a~~s~~~~~~~vgaviv~~~~~~ 37 (102)
T PF00383_consen 7 FMRIAIELAKRSRPCGNFPVGAVIVDPDGKI 37 (102)
T ss_dssp HHHHHHHHHHTHBTTTSSSEEEEEEETTTEE
T ss_pred HHHHHHHHHHhccccCCCCEEEEEEeccCcc
Confidence 567777776666 889999999987654
No 194
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=22.98 E-value=2e+02 Score=17.84 Aligned_cols=28 Identities=14% Similarity=0.331 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 144 RIMNEISTLERKGAKLLEENKNLKQKVRL 172 (183)
Q Consensus 144 ll~~~i~~l~~k~~~l~~~n~~L~~~~~~ 172 (183)
++.+... +......|+++|..|+.-+..
T Consensus 31 vL~~R~~-l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 31 VLLDRAA-LIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 3333333 555557888999988877654
No 195
>PRK03918 chromosome segregation protein; Provisional
Probab=22.76 E-value=6.6e+02 Score=23.80 Aligned_cols=14 Identities=21% Similarity=0.223 Sum_probs=6.1
Q ss_pred CHHHHHHHHHHHHH
Q 030090 119 TIEELQHLETMLEQ 132 (183)
Q Consensus 119 s~~eL~~Le~~Le~ 132 (183)
+.+++..++..++.
T Consensus 657 ~~~~~~~l~~~~~~ 670 (880)
T PRK03918 657 SEEEYEELREEYLE 670 (880)
T ss_pred CHHHHHHHHHHHHH
Confidence 34444444444443
No 196
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=22.68 E-value=1.8e+02 Score=17.52 Aligned_cols=25 Identities=24% Similarity=0.139 Sum_probs=17.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 030090 115 LHGLTIEELQHLETMLEQGLSRVLQ 139 (183)
Q Consensus 115 l~~Ls~~eL~~Le~~Le~~L~~IR~ 139 (183)
|-++|.+||......+...|-..|-
T Consensus 2 lr~~s~~EL~~~l~~lr~eLf~Lr~ 26 (55)
T TIGR00012 2 LREKSKEELAKKLDELKKELFELRF 26 (55)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888777777777776663
No 197
>KOG1560 consensus Translation initiation factor 3, subunit h (eIF-3h) [Translation, ribosomal structure and biogenesis]
Probab=22.65 E-value=2.3e+02 Score=23.65 Aligned_cols=52 Identities=13% Similarity=0.211 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 030090 127 ETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFDLWNH 178 (183)
Q Consensus 127 e~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~~~~~ 178 (183)
...++.+....-.+-.++|++.+++|......+-.-...+..+=.+.++|-+
T Consensus 215 ~~~fdlgs~t~leknir~lme~vDEl~qe~~~l~kyqr~~~rqq~~~~q~~a 266 (339)
T KOG1560|consen 215 HSNFDLGSGTRLEKNIRLLMERVDELHQEIVNLNKYQRQLARQQAKKHQWIA 266 (339)
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666777788888888877777776666666666666666654
No 198
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=22.50 E-value=2.8e+02 Score=19.30 Aligned_cols=51 Identities=18% Similarity=0.296 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 117 GLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQ 168 (183)
Q Consensus 117 ~Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~ 168 (183)
++|++|+..+-.....+-... ....+++.+++..+..+...|...-..|..
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 107 (123)
T cd04770 57 GFSLAEIRELLSLRDDGAAPC-AEVRALLEEKLAEVEAKIAELQALRAELAG 107 (123)
T ss_pred CCCHHHHHHHHHhhhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377777777655433210000 111234444444444444444444444443
No 199
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=22.48 E-value=38 Score=17.63 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=16.0
Q ss_pred hhhcCcceEEEEecCCCcccccCc
Q 030090 36 SVLCDAEVGVIIFSATGKLFESSS 59 (183)
Q Consensus 36 s~LCd~~vavivfs~~gk~~~~~s 59 (183)
+|-|+..-.+++.+ +|++|.|++
T Consensus 3 ~ia~G~~ht~al~~-~g~v~~wG~ 25 (30)
T PF13540_consen 3 QIACGGYHTCALTS-DGEVYCWGD 25 (30)
T ss_dssp EEEEESSEEEEEE--TTEEEEEE-
T ss_pred EEEecCCEEEEEEc-CCCEEEEcC
Confidence 45677777777765 589999986
No 200
>COG3938 Proline racemase [Amino acid transport and metabolism]
Probab=22.37 E-value=78 Score=26.59 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=21.6
Q ss_pred CcceEEEEecCCCcccccCcc--hhHHHH
Q 030090 40 DAEVGVIIFSATGKLFESSSS--SMKDII 66 (183)
Q Consensus 40 d~~vavivfs~~gk~~~~~s~--~v~~vl 66 (183)
||++|+|++-|+|-+.-.+|. ++-.++
T Consensus 74 da~aa~ii~eps~~~pMsGsntIc~~T~l 102 (341)
T COG3938 74 DADAAVIIMEPSGCLPMSGSNTICVVTVL 102 (341)
T ss_pred CccEEEEEEccCCCCCcCCCCchhhhhHH
Confidence 899999999999998888883 444443
No 201
>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes. It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu
Probab=22.31 E-value=90 Score=20.02 Aligned_cols=28 Identities=14% Similarity=0.391 Sum_probs=19.0
Q ss_pred cCcceEEEEecCCCcccccCc-chhHHHHHHh
Q 030090 39 CDAEVGVIIFSATGKLFESSS-SSMKDIIARY 69 (183)
Q Consensus 39 Cd~~vavivfs~~gk~~~~~s-~~v~~vl~RY 69 (183)
|+--.+++| +|..|...+ ..+.+|++.|
T Consensus 52 C~~gP~v~v---~g~~y~~vt~~~i~~i~~~~ 80 (80)
T cd03064 52 CDLAPVMMI---NDDVYGRLTPEKVDAILEAL 80 (80)
T ss_pred CCCCCEEEE---CCEEECCCCHHHHHHHHHhC
Confidence 665555666 377777777 5888888754
No 202
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=22.17 E-value=3.7e+02 Score=20.65 Aligned_cols=15 Identities=27% Similarity=0.417 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 030090 145 IMNEISTLERKGAKL 159 (183)
Q Consensus 145 l~~~i~~l~~k~~~l 159 (183)
..++|+.|++....|
T Consensus 168 ~~~ei~~lk~~~~ql 182 (189)
T PF10211_consen 168 HQEEIDFLKKQNQQL 182 (189)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 203
>cd04784 HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=22.11 E-value=2.9e+02 Score=19.41 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 117 GLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKV 170 (183)
Q Consensus 117 ~Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~ 170 (183)
++|++|+..+-......-.. -..-..++.+++..+..+...|+.-...|....
T Consensus 57 G~sL~eI~~~l~~~~~~~~~-~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (127)
T cd04784 57 DMSLDEIRTLLQLQDDPEAS-CAEVNALIDEHLAHVRARIAELQALEKQLQALR 109 (127)
T ss_pred CCCHHHHHHHHHhhhcCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888888865533211000 011223445555555555555555555554443
No 204
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=21.94 E-value=77 Score=26.78 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=19.6
Q ss_pred hhhcCcceEEEEecCC--Ccccc-cCc
Q 030090 36 SVLCDAEVGVIIFSAT--GKLFE-SSS 59 (183)
Q Consensus 36 s~LCd~~vavivfs~~--gk~~~-~~s 59 (183)
+++-|..++|+.|+++ ||-|+ |+.
T Consensus 83 ~~l~G~n~~i~ayGqtGSGKT~Tm~G~ 109 (356)
T cd01365 83 HAFEGYNVCLFAYGQTGSGKSYTMMGY 109 (356)
T ss_pred HHhCCCceEEEEecCCCCCCeEEecCC
Confidence 3678999999999985 68887 666
No 205
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=21.88 E-value=52 Score=23.02 Aligned_cols=18 Identities=39% Similarity=0.538 Sum_probs=15.2
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 030090 114 DLHGLTIEELQHLETMLE 131 (183)
Q Consensus 114 ~l~~Ls~~eL~~Le~~Le 131 (183)
.++.||++|++.|...++
T Consensus 86 Rle~l~~eE~~~L~~eie 103 (104)
T PF11460_consen 86 RLEELSPEELEALQAEIE 103 (104)
T ss_pred HHHhCCHHHHHHHHHHhc
Confidence 456799999999998876
No 206
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=21.78 E-value=4.4e+02 Score=21.34 Aligned_cols=55 Identities=20% Similarity=0.230 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 030090 120 IEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFDLWNHH 179 (183)
Q Consensus 120 ~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~~~~~~ 179 (183)
+++|.++...+...=+.|..-|. +.+++... .....++...|+.++.++.+.+.+
T Consensus 70 veelr~iHadiN~men~ikq~k~--~~~~~~~~---~~r~~eey~~lk~h~d~lR~~~lg 124 (286)
T KOG4451|consen 70 VEELREIHADINEMENDIKQVKA--LEQHITSC---NGRKGEEYMELKSHADELRQINLG 124 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh---hcchhHHHHHHHHHHHHHHHHhcC
Confidence 66666666655554343333332 23333332 455677888888888877765543
No 207
>PLN03128 DNA topoisomerase 2; Provisional
Probab=21.63 E-value=71 Score=31.73 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=31.6
Q ss_pred HHHHHhHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH
Q 030090 91 SKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETML 130 (183)
Q Consensus 91 ~~~~~Lk~eie~l~~~lr~~~ge~l~~Ls~~eL~~Le~~L 130 (183)
.++++|+++.++++.++..+......+|..+||..|+..+
T Consensus 1095 e~~~kL~~e~~~~~~ei~~l~~~t~~~~w~~DLd~~~~~~ 1134 (1135)
T PLN03128 1095 EKVDELRAERAKKETEVEELKKTTPEDLWRKDLDAFEEAL 1134 (1135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 3577888888888888888777777778888888888765
No 208
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=21.60 E-value=1.3e+02 Score=20.38 Aligned_cols=35 Identities=9% Similarity=0.136 Sum_probs=26.5
Q ss_pred hcCcceEEEEecCCCc-ccccCc-chhHHHHHHhhhc
Q 030090 38 LCDAEVGVIIFSATGK-LFESSS-SSMKDIIARYNMH 72 (183)
Q Consensus 38 LCd~~vavivfs~~gk-~~~~~s-~~v~~vl~RY~~~ 72 (183)
+|..+--|.|+.|.|+ .|.... ..+.+|++.+...
T Consensus 44 ~C~~ePlV~V~~p~g~v~Y~~V~~edv~~Iv~~~~~~ 80 (92)
T cd03063 44 MYWLEPLVEVETPGGRVAYGPVTPADVASLLDAGALE 80 (92)
T ss_pred ecCCCCEEEEEeCCCcEEEEeCCHHHHHHHHHHHhhc
Confidence 6888888889888884 444444 5999999988763
No 209
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=21.52 E-value=7.1e+02 Score=23.72 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 139 QTKGDRIMNEISTLERKGAKLLEENKNLKQKV 170 (183)
Q Consensus 139 ~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~ 170 (183)
+|+...|..+|..|+++.+.....|..|-+.|
T Consensus 604 arrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v 635 (961)
T KOG4673|consen 604 ARREDMFRGEIEDLQRRLQAAERRCEELIQQV 635 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46677777778888777777777776666555
No 210
>cd04777 HTH_MerR-like_sg1 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 1), N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.33 E-value=2.7e+02 Score=18.86 Aligned_cols=12 Identities=25% Similarity=0.564 Sum_probs=8.9
Q ss_pred CCCHHHHHHHHH
Q 030090 117 GLTIEELQHLET 128 (183)
Q Consensus 117 ~Ls~~eL~~Le~ 128 (183)
++|++|+.++-.
T Consensus 55 G~sL~eI~~~l~ 66 (107)
T cd04777 55 GFSLIEIQKIFS 66 (107)
T ss_pred CCCHHHHHHHHH
Confidence 588888888654
No 211
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=21.25 E-value=4.6e+02 Score=22.92 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=26.8
Q ss_pred HHHHHhHHHHHHHHHHHHhhcC-CCCCCCCHHHHHHHHHHHHHHHH
Q 030090 91 SKYLSLSREIADKSRQLRQMRG-EDLHGLTIEELQHLETMLEQGLS 135 (183)
Q Consensus 91 ~~~~~Lk~eie~l~~~lr~~~g-e~l~~Ls~~eL~~Le~~Le~~L~ 135 (183)
....++......++..++...- -...-++.+|+..+...+...+.
T Consensus 262 ~~~~~l~~~~~~l~~~l~~~~~Eis~grl~~~Dl~~i~~~lr~l~~ 307 (459)
T PF10337_consen 262 ATKAKLRALYAKLQAALRFLKLEISYGRLSPDDLKPIFSLLRSLMI 307 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHeeecCCHHHHHHHHHHHHHHHH
Confidence 3345555555555555544331 23456899999998877665433
No 212
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=21.21 E-value=84 Score=25.97 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=18.6
Q ss_pred hhcCcceEEEEecCC--Ccccc-cCc
Q 030090 37 VLCDAEVGVIIFSAT--GKLFE-SSS 59 (183)
Q Consensus 37 ~LCd~~vavivfs~~--gk~~~-~~s 59 (183)
++.|..+||++|+++ ||-|+ |++
T Consensus 74 ~~~G~~~~i~~yG~tgSGKT~tl~G~ 99 (328)
T cd00106 74 VLEGYNGTIFAYGQTGSGKTYTMFGS 99 (328)
T ss_pred HhCCCceeEEEecCCCCCCeEEecCC
Confidence 467999999999985 68887 664
No 213
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=21.15 E-value=2.9e+02 Score=19.12 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=13.5
Q ss_pred hhHHHHHHhHHHHHHH
Q 030090 88 LENSKYLSLSREIADK 103 (183)
Q Consensus 88 ~~~~~~~~Lk~eie~l 103 (183)
.|..+|+.|+++++.+
T Consensus 9 ~w~aEYe~LKEEi~~l 24 (99)
T PF13758_consen 9 TWEAEYEGLKEEIEAL 24 (99)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3678899999999888
No 214
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=20.80 E-value=55 Score=26.80 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=30.0
Q ss_pred eecCCcccccccccccchhhhhHHhhhhhcCcceEEEEecCCCcc
Q 030090 10 KIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKL 54 (183)
Q Consensus 10 ~Ien~~~R~~Tf~KRr~GL~KKA~ELs~LCd~~vavivfs~~gk~ 54 (183)
.|+.--.|...|+++..|- + +=.+.-+||++++|++.+...
T Consensus 52 ~i~~i~~R~~~l~R~~~~~--~--~~~i~anvD~vllV~d~~~p~ 92 (287)
T cd01854 52 VIVRVLPRKNLLSRPAAGG--R--EQVIAANVDQLVIVVSLNEPF 92 (287)
T ss_pred EEEEEECCCceEEccCCCC--c--ceeEEEeCCEEEEEEEcCCCC
Confidence 4555556777777777662 2 667889999999999986644
No 215
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=20.70 E-value=50 Score=27.16 Aligned_cols=32 Identities=28% Similarity=0.524 Sum_probs=23.8
Q ss_pred cccccccchhhhhHHhhhhhcCcceEEEEecCCCcccccCcc
Q 030090 19 VTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60 (183)
Q Consensus 19 ~Tf~KRr~GL~KKA~ELs~LCd~~vavivfs~~gk~~~~~s~ 60 (183)
.||.+|. ||+ +--++.+||+.| .|+.|.|+|+
T Consensus 210 ~tl~~~~-GLL-------lPG~p~~Gv~~~--~~k~y~F~s~ 241 (281)
T PF12018_consen 210 WTLAERD-GLL-------LPGNPSIGVLKY--KDKYYAFSSR 241 (281)
T ss_pred EEEeccC-cee-------ecCCCccceeEE--cCEEEEeCCH
Confidence 4666663 754 455788888888 6799999995
No 216
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=20.70 E-value=3.9e+02 Score=24.38 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhccCCCC
Q 030090 135 SRVLQTKGD-RIMNEISTLERKGAKLLEENKNLKQKVRLFD-LWNHHLGFP 183 (183)
Q Consensus 135 ~~IR~rK~~-ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~-~~~~~~~~~ 183 (183)
.+.|++++= .|-+.+..+-.|+++|..+|+.|..++..+. .|..+.|.+
T Consensus 36 sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~i 86 (546)
T KOG0977|consen 36 SREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGI 86 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcch
No 217
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=20.58 E-value=3.1e+02 Score=19.23 Aligned_cols=12 Identities=17% Similarity=0.171 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHH
Q 030090 139 QTKGDRIMNEIS 150 (183)
Q Consensus 139 ~rK~~ll~~~i~ 150 (183)
.||++++..+.+
T Consensus 52 qRKe~Ll~Kh~~ 63 (106)
T PF11594_consen 52 QRKEQLLQKHYE 63 (106)
T ss_pred HHHHHHHHHHHH
Confidence 566666544433
No 218
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=20.41 E-value=4.9e+02 Score=21.75 Aligned_cols=42 Identities=21% Similarity=0.458 Sum_probs=26.2
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030090 133 GLSRVLQTKGD---RIMNEISTLERKGAKLLEENKNLKQKVRLFD 174 (183)
Q Consensus 133 ~L~~IR~rK~~---ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~ 174 (183)
+-.+-|.||.. -++.++..|.++...|.+.-..|..+|..+.
T Consensus 238 AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylK 282 (294)
T KOG4571|consen 238 AATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLK 282 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666543 4466677777777777766666666666554
No 219
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=20.30 E-value=3.2e+02 Score=19.19 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 118 LTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKV 170 (183)
Q Consensus 118 Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~ 170 (183)
+|++|+.++-..-... .. ..-..++..++..+..+...|+.--..|...+
T Consensus 58 ~sL~eI~~~l~~~~~~--~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~l~~~~ 107 (126)
T cd04783 58 FTLDEIAELLELDDGT--DC-SEARELAEQKLAEVDEKIADLQRMRASLQELV 107 (126)
T ss_pred CCHHHHHHHHhcccCC--CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777655432210 00 11223444444555444444444444444444
No 220
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=20.23 E-value=40 Score=26.52 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=11.9
Q ss_pred EEEEecCCCcccc--cCc
Q 030090 44 GVIIFSATGKLFE--SSS 59 (183)
Q Consensus 44 avivfs~~gk~~~--~~s 59 (183)
.+-+|||+|++|. |+.
T Consensus 4 ~~t~fsp~Grl~QveyA~ 21 (227)
T cd03750 4 SLTTFSPSGKLVQIEYAL 21 (227)
T ss_pred CCceECCCCeEhHHHHHH
Confidence 4568999999864 664
No 221
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=20.23 E-value=3.4e+02 Score=19.45 Aligned_cols=29 Identities=17% Similarity=0.295 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 144 RIMNEISTLERKGAKLLEENKNLKQKVRL 172 (183)
Q Consensus 144 ll~~~i~~l~~k~~~l~~~n~~L~~~~~~ 172 (183)
++.+++..+..+...|++--..|...+..
T Consensus 82 ~l~~k~~~i~~~i~~L~~~~~~L~~~i~~ 110 (131)
T cd04786 82 ALERKVADIEALEARLAQNKAQLLVLIDL 110 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666655556555543
No 222
>PF13188 PAS_8: PAS domain; PDB: 2JHE_D 3VOL_A.
Probab=20.22 E-value=98 Score=18.37 Aligned_cols=29 Identities=10% Similarity=0.339 Sum_probs=21.5
Q ss_pred hhcCcceEEEEecCCCcccccCcchhHHHHH
Q 030090 37 VLCDAEVGVIIFSATGKLFESSSSSMKDIIA 67 (183)
Q Consensus 37 ~LCd~~vavivfs~~gk~~~~~s~~v~~vl~ 67 (183)
++=.+..+|+|+. +| .+.|+++.+.+++.
T Consensus 6 l~~~~~~~i~i~d-~~-~i~~~N~~~~~l~g 34 (64)
T PF13188_consen 6 LFDNSPDGILIID-GG-RIIYVNPAFEELFG 34 (64)
T ss_dssp HHCCSSSEEEEEE-TS-BEEEE-HHHHHHHC
T ss_pred HHHcCccceEEEE-CC-ChHHhhHHHHHHhC
Confidence 4446788999999 66 67788888888775
No 223
>PHA02109 hypothetical protein
Probab=20.18 E-value=3.7e+02 Score=20.78 Aligned_cols=42 Identities=31% Similarity=0.483 Sum_probs=24.4
Q ss_pred hhcCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 109 QMRGEDLHGLT--IEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEE 162 (183)
Q Consensus 109 ~~~ge~l~~Ls--~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~ 162 (183)
...|++|++|+ ++|+-.|+..|+. +.++.-.++.|..++.++
T Consensus 179 ~~t~~~L~~~~~~L~~I~~L~~ki~~------------LS~E~~Q~~~Ki~N~R~~ 222 (233)
T PHA02109 179 SHTGENLEGLTDKLKQISELTIKLEA------------LSDEACQVKHKILNLRAE 222 (233)
T ss_pred ccchhhhhhhhHHHHhhHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Confidence 44567777766 5666666655554 445555566565555444
No 224
>PF04521 Viral_P18: ssRNA positive strand viral 18kD cysteine rich protein; InterPro: IPR007609 This family represents the 18kDa cysteine-rich protein from ssRNA positive strand viruses.
Probab=20.14 E-value=2.5e+02 Score=20.12 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=17.9
Q ss_pred ccccccccchhhhhHHhhhhhc
Q 030090 18 QVTFSKRRRGLFKKAEELSVLC 39 (183)
Q Consensus 18 ~~Tf~KRr~GL~KKA~ELs~LC 39 (183)
-++|+|+|..+++|-.+-++-|
T Consensus 4 ~~~~rk~R~~~y~~lgl~~vkC 25 (120)
T PF04521_consen 4 FRCVRKYRASVYKKLGLSAVKC 25 (120)
T ss_pred hHHHHHHHHHHHHHcCCeeeee
Confidence 4678999999999988876644
No 225
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.02 E-value=2.8e+02 Score=23.22 Aligned_cols=42 Identities=31% Similarity=0.422 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 116 HGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNL 166 (183)
Q Consensus 116 ~~Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L 166 (183)
++||.+|-.. |.+||.||.++ .++|+.|+.......+|-..|
T Consensus 9 ~~Ls~~E~~e--------L~~ir~rk~qL-~deIq~Lk~Ei~ev~~eid~~ 50 (395)
T KOG0930|consen 9 NDLSEEERME--------LENIRRRKQEL-LDEIQRLKDEIAEVMEEIDNL 50 (395)
T ss_pred CCCCHHHHHh--------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhh
Confidence 4566666544 45788888776 467888877777666665444
Done!