Query 030090
Match_columns 183
No_of_seqs 141 out of 1282
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 13:19:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030090.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030090hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 2.4E-41 8.1E-46 223.4 2.5 74 2-75 1-74 (77)
2 3p57_A Myocyte-specific enhanc 100.0 6.7E-41 2.3E-45 226.4 2.6 76 2-77 1-76 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 4.6E-39 1.6E-43 221.0 1.6 71 1-71 16-86 (100)
4 1hbx_A SRF, serum response fac 100.0 5.8E-39 2E-43 217.7 0.3 70 1-70 10-79 (92)
5 1k6o_B SRF, serum response fac 100.0 2.9E-38 1E-42 218.3 0.6 69 1-69 9-77 (103)
6 2jee_A YIIU; FTSZ, septum, coi 92.2 1.5 5.2E-05 28.3 8.9 43 118-165 3-45 (81)
7 3s9g_A Protein hexim1; cyclin 90.2 2.5 8.7E-05 28.2 8.1 35 146-183 64-98 (104)
8 2w6a_A ARF GTPase-activating p 89.5 2.3 7.7E-05 25.7 8.8 52 117-168 9-62 (63)
9 2dgc_A Protein (GCN4); basic d 86.0 3.9 0.00013 24.9 6.6 36 135-174 22-57 (63)
10 2wt7_A Proto-oncogene protein 82.2 6.3 0.00022 23.9 6.6 36 135-174 15-50 (63)
11 1dh3_A Transcription factor CR 82.1 5.9 0.0002 23.4 6.6 29 147-175 22-50 (55)
12 3nmd_A CGMP dependent protein 81.0 8.1 0.00028 24.3 8.0 54 114-174 14-67 (72)
13 1dip_A Delta-sleep-inducing pe 79.8 3.4 0.00012 26.0 4.5 28 143-170 18-45 (78)
14 1t2k_D Cyclic-AMP-dependent tr 79.8 7.6 0.00026 23.3 6.6 36 135-174 14-49 (61)
15 1ci6_A Transcription factor AT 78.8 8.6 0.0003 23.3 6.6 36 135-174 15-50 (63)
16 1gd2_E Transcription factor PA 75.0 13 0.00043 23.2 6.2 41 133-173 19-62 (70)
17 1jnm_A Proto-oncogene C-JUN; B 74.7 11 0.00039 22.6 6.8 36 135-174 14-49 (62)
18 2yy0_A C-MYC-binding protein; 70.7 8.5 0.00029 22.6 4.4 27 145-171 24-50 (53)
19 2oqq_A Transcription factor HY 70.1 12 0.0004 20.8 5.7 27 145-171 15-41 (42)
20 1p9i_A Cortexillin I/GCN4 hybr 69.6 6.7 0.00023 19.7 3.1 18 156-173 8-25 (31)
21 2dfs_A Myosin-5A; myosin-V, in 69.2 77 0.0026 29.9 12.8 27 149-175 1018-1044(1080)
22 3hnw_A Uncharacterized protein 68.1 29 0.00098 24.5 11.2 67 91-171 68-134 (138)
23 2v71_A Nuclear distribution pr 67.2 36 0.0012 25.3 10.7 28 148-175 89-116 (189)
24 1j1d_C Troponin I, TNI; THIN f 66.0 32 0.0011 24.2 9.0 33 112-144 52-84 (133)
25 2jee_A YIIU; FTSZ, septum, coi 64.8 25 0.00085 22.5 6.1 26 145-170 18-43 (81)
26 3hnw_A Uncharacterized protein 64.4 34 0.0012 24.0 9.2 51 123-173 77-129 (138)
27 2oxj_A Hybrid alpha/beta pepti 64.3 13 0.00044 19.6 3.8 26 149-174 3-28 (34)
28 3gp4_A Transcriptional regulat 64.2 34 0.0012 23.9 7.7 57 117-174 59-115 (142)
29 1a93_B MAX protein, coiled coi 62.6 15 0.00052 19.5 3.9 23 140-162 7-29 (34)
30 1gk7_A Vimentin; intermediate 61.7 17 0.00058 19.8 4.2 28 144-171 10-37 (39)
31 3nrf_A APAG protein; structura 60.3 1.3 4.4E-05 30.0 -0.8 42 11-57 21-62 (106)
32 1ytz_T Troponin T; muscle, THI 59.6 37 0.0013 22.9 6.7 55 111-173 35-89 (107)
33 1j1d_B Troponin T, TNT; THIN f 59.4 37 0.0013 22.8 6.6 52 114-173 38-89 (106)
34 1j1e_C Troponin I, TNI; THIN f 58.5 53 0.0018 24.3 8.1 33 112-144 52-84 (180)
35 3gpv_A Transcriptional regulat 57.4 45 0.0015 23.4 7.1 60 117-177 73-132 (148)
36 1go4_E MAD1 (mitotic arrest de 57.1 24 0.00083 23.5 5.1 30 147-176 12-41 (100)
37 1g6u_A Domain swapped dimer; d 56.7 23 0.00077 19.5 4.8 24 116-139 15-38 (48)
38 1fxk_A Prefoldin; archaeal pro 56.4 39 0.0013 22.0 9.1 28 145-172 77-104 (107)
39 1kd8_B GABH BLL, GCN4 acid bas 55.8 22 0.00074 19.0 3.7 21 151-171 5-25 (36)
40 2aze_A Transcription factor DP 55.6 55 0.0019 23.6 8.2 48 119-168 3-50 (155)
41 2oa5_A Hypothetical protein BQ 55.5 45 0.0015 22.6 6.9 57 87-143 11-69 (110)
42 2l5g_A GPS2 protein, G protein 54.3 22 0.00075 19.2 3.7 15 149-163 17-31 (38)
43 3m48_A General control protein 54.0 20 0.0007 18.8 3.4 24 150-173 3-26 (33)
44 1gu4_A CAAT/enhancer binding p 51.3 44 0.0015 21.1 6.6 24 150-173 39-62 (78)
45 2zqm_A Prefoldin beta subunit 50.3 52 0.0018 21.7 9.2 44 131-175 69-112 (117)
46 1am9_A Srebp-1A, protein (ster 49.0 32 0.0011 21.8 4.6 29 147-175 50-78 (82)
47 3c3f_A Alpha/beta peptide with 48.8 28 0.00097 18.3 3.8 24 150-173 4-27 (34)
48 1deb_A APC protein, adenomatou 48.4 35 0.0012 19.7 4.1 21 151-171 7-27 (54)
49 3hvz_A Uncharacterized protein 47.6 11 0.00036 23.9 2.1 25 44-68 7-32 (78)
50 3oja_B Anopheles plasmodium-re 44.8 1.4E+02 0.005 25.3 11.9 27 147-173 551-577 (597)
51 3m9b_A Proteasome-associated A 44.3 39 0.0013 26.3 5.2 42 121-167 54-95 (251)
52 1ci6_A Transcription factor AT 43.9 51 0.0017 19.7 5.6 29 144-172 34-62 (63)
53 1z0k_B FYVE-finger-containing 43.7 55 0.0019 20.2 4.8 31 137-167 36-66 (69)
54 2ky6_A Mediator of RNA polymer 42.5 19 0.00065 26.2 3.0 36 36-71 116-159 (166)
55 3w03_C DNA repair protein XRCC 42.0 45 0.0015 24.7 5.0 30 145-174 150-179 (184)
56 1m2d_A [2Fe-2S] ferredoxin; th 41.8 17 0.00058 24.2 2.6 32 39-71 59-91 (110)
57 3q4f_C DNA repair protein XRCC 41.3 33 0.0011 25.4 4.1 23 147-169 161-183 (186)
58 1kd8_A GABH AIV, GCN4 acid bas 40.6 33 0.0011 18.3 3.0 20 152-171 6-25 (36)
59 3na7_A HP0958; flagellar bioge 40.4 1.2E+02 0.0042 23.1 9.1 22 119-140 88-109 (256)
60 2oa5_A Hypothetical protein BQ 38.7 21 0.00071 24.2 2.5 24 149-172 10-33 (110)
61 2hy6_A General control protein 38.5 44 0.0015 17.5 3.6 23 150-172 4-26 (34)
62 2bni_A General control protein 38.3 45 0.0015 17.6 3.6 22 151-172 5-26 (34)
63 1nlw_A MAD protein, MAX dimeri 38.2 69 0.0023 20.1 4.9 19 152-170 59-77 (80)
64 1nkp_B MAX protein, MYC proto- 37.5 75 0.0025 19.9 5.3 28 145-172 52-79 (83)
65 2w6b_A RHO guanine nucleotide 37.5 63 0.0021 19.0 4.5 26 146-171 9-34 (56)
66 2v66_B Nuclear distribution pr 36.2 99 0.0034 20.9 9.3 16 92-107 11-26 (111)
67 2l5g_B Putative uncharacterize 36.1 57 0.0019 18.1 5.4 37 118-162 2-38 (42)
68 1t2k_D Cyclic-AMP-dependent tr 36.0 67 0.0023 18.9 5.5 27 144-170 33-59 (61)
69 1nkp_A C-MYC, MYC proto-oncoge 35.3 87 0.003 20.0 5.3 27 148-174 60-86 (88)
70 3c3g_A Alpha/beta peptide with 35.2 50 0.0017 17.2 4.4 22 151-172 4-25 (33)
71 3a7p_A Autophagy protein 16; c 35.1 1.2E+02 0.0042 21.6 9.4 21 147-167 110-130 (152)
72 3ol1_A Vimentin; structural ge 34.5 1.1E+02 0.0036 20.7 6.5 40 128-168 65-104 (119)
73 3jrn_A AT1G72930 protein; TIR 33.9 21 0.00071 26.3 2.1 33 38-70 60-92 (176)
74 1q08_A Zn(II)-responsive regul 33.2 93 0.0032 19.7 7.7 57 117-174 16-73 (99)
75 2dm0_A Tyrosine-protein kinase 32.4 41 0.0014 22.7 3.4 42 33-74 52-104 (125)
76 2zvv_Y Cyclin-dependent kinase 32.4 10 0.00035 18.5 0.1 12 15-26 15-26 (26)
77 1yzm_A FYVE-finger-containing 32.2 76 0.0026 18.4 5.6 33 135-167 16-48 (51)
78 3anw_B GINS23, putative unchar 30.6 83 0.0028 23.0 4.8 85 92-177 81-168 (171)
79 1m1j_B Fibrinogen beta chain; 30.2 2.5E+02 0.0087 23.8 8.5 40 27-71 55-96 (464)
80 3v1a_A Computational design, M 30.1 81 0.0028 18.0 4.2 30 136-165 16-45 (48)
81 2zxx_A Geminin; coiled-coil, c 29.0 1E+02 0.0036 19.5 4.5 27 145-171 39-65 (79)
82 2ekx_A Cytoplasmic tyrosine-pr 28.9 48 0.0016 21.7 3.1 42 33-74 47-99 (110)
83 1ybx_A Conserved hypothetical 28.5 1.6E+02 0.0053 20.8 6.2 61 90-150 47-130 (143)
84 1lkk_A Human P56 tyrosine kina 28.2 43 0.0015 21.6 2.8 43 32-74 41-93 (105)
85 3ra3_B P2F; coiled coil domain 28.1 59 0.002 15.8 3.2 23 151-173 4-26 (28)
86 1hjb_A Ccaat/enhancer binding 27.7 1.2E+02 0.0042 19.4 6.3 20 152-171 41-60 (87)
87 1z56_A Ligase interacting fact 27.2 95 0.0032 24.0 4.8 56 9-71 117-175 (246)
88 3s4r_A Vimentin; alpha-helix, 27.1 1.3E+02 0.0044 19.4 8.6 31 143-173 52-82 (93)
89 2ygg_A Sodium/hydrogen exchang 27.0 96 0.0033 19.2 3.9 23 118-140 4-26 (70)
90 2rpa_A Katanin P60 ATPase-cont 26.8 5.8 0.0002 25.3 -1.8 34 29-73 16-49 (78)
91 1uo4_A General control protein 26.6 77 0.0026 16.6 3.6 23 150-172 4-26 (34)
92 1z0j_B FYVE-finger-containing 26.6 1.1E+02 0.0037 18.3 4.4 41 127-167 15-55 (59)
93 2phn_A F420-0:gamma-glutamyl l 26.2 13 0.00045 29.1 -0.2 26 34-59 138-163 (254)
94 1nlw_A MAD protein, MAX dimeri 26.1 1.2E+02 0.0043 18.9 4.8 28 147-174 47-74 (80)
95 2kmm_A Guanosine-3',5'-BIS(dip 25.6 48 0.0016 19.7 2.5 25 45-69 3-28 (73)
96 1blj_A P55 BLK protein tyrosin 25.6 50 0.0017 21.7 2.8 42 33-74 50-100 (114)
97 3h4p_A Proteasome subunit alph 25.4 14 0.00049 28.8 -0.1 20 40-59 11-32 (264)
98 4gfh_A DNA topoisomerase 2; to 25.0 4.4E+02 0.015 25.1 9.9 121 45-175 975-1171(1177)
99 1r8e_A Multidrug-efflux transp 25.0 1.8E+02 0.0062 21.9 6.4 11 117-127 63-73 (278)
100 3l4j_A DNA topoisomerase 2; to 24.5 55 0.0019 29.6 3.5 44 91-134 707-750 (757)
101 3nzj_F Proteasome component C1 24.4 12 0.0004 29.7 -0.8 20 37-56 4-23 (288)
102 1t6f_A Geminin; coiled-coil, c 24.3 89 0.0031 16.6 4.1 22 146-167 13-34 (37)
103 2jo8_A Serine/threonine-protei 24.2 1.1E+02 0.0038 17.6 5.0 19 115-133 7-25 (51)
104 2eo6_A B-cell linker protein; 24.2 70 0.0024 22.1 3.4 43 33-75 62-114 (141)
105 1rja_A Tyrosine-protein kinase 23.1 67 0.0023 20.5 3.0 42 33-74 40-86 (100)
106 2eob_A 1-phosphatidylinositol- 22.8 59 0.002 21.9 2.7 43 32-74 54-100 (124)
107 4fi5_A Nucleoprotein; structur 22.4 1.9E+02 0.0063 19.6 7.5 8 117-124 21-28 (113)
108 3iv1_A Tumor susceptibility ge 22.2 1.6E+02 0.0053 18.6 8.3 11 149-159 27-37 (78)
109 4d8k_A Tyrosine-protein kinase 22.0 60 0.0021 23.1 2.8 42 33-74 112-163 (175)
110 1uii_A Geminin; human, DNA rep 21.9 1.6E+02 0.0056 18.7 5.5 27 145-171 51-77 (83)
111 1ryp_E 20S proteasome; multica 21.7 15 0.0005 28.0 -0.7 13 44-56 3-15 (242)
112 2vz4_A Tipal, HTH-type transcr 21.6 1.1E+02 0.0039 19.8 4.0 47 117-170 58-104 (108)
113 1ryp_D 20S proteasome; multica 21.6 17 0.00059 27.6 -0.3 15 42-56 3-17 (241)
114 1hlo_A Protein (transcription 21.5 1.4E+02 0.0047 18.5 4.1 22 147-168 57-78 (80)
115 3fg8_A Uncharacterized protein 21.5 53 0.0018 20.7 2.2 31 36-67 16-46 (118)
116 3rrk_A V-type ATPase 116 kDa s 21.5 1.6E+02 0.0054 23.4 5.5 34 146-179 105-141 (357)
117 1jyr_A Growth factor receptor- 21.4 56 0.0019 20.9 2.3 41 33-73 40-84 (96)
118 2k1v_A Insulin-like peptide IN 21.2 29 0.001 17.1 0.6 9 32-40 14-22 (26)
119 1r8d_A Transcription activator 21.2 1.4E+02 0.0049 19.3 4.4 11 117-127 59-69 (109)
120 4fbn_A 1-phosphatidylinositol 21.2 40 0.0014 25.8 1.8 42 33-74 158-202 (246)
121 3tkz_A Tyrosine-protein phosph 21.0 70 0.0024 20.8 2.7 41 34-74 45-89 (109)
122 1r1p_A GRB2-related adaptor pr 20.9 68 0.0023 20.6 2.6 42 33-74 45-90 (100)
123 1iru_G 20S proteasome; cell cy 20.6 16 0.00054 28.2 -0.7 18 39-56 5-22 (254)
124 3qx3_A DNA topoisomerase 2-bet 20.4 90 0.0031 28.5 4.0 43 92-134 735-777 (803)
125 3sl9_C B-cell CLL/lymphoma 9 p 20.3 1.3E+02 0.0045 17.1 3.7 22 111-132 3-24 (55)
126 1ryp_B 20S proteasome; multica 20.3 19 0.00065 27.6 -0.3 16 41-56 5-20 (250)
127 3rmq_A Uncharacterized protein 20.1 22 0.00074 24.2 -0.0 15 33-47 30-44 (116)
128 3azd_A Short alpha-tropomyosin 20.1 52 0.0018 17.6 1.6 23 149-171 6-28 (37)
129 3s9g_A Protein hexim1; cyclin 20.1 2E+02 0.0068 19.0 9.0 90 51-168 4-93 (104)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=2.4e-41 Score=223.36 Aligned_cols=74 Identities=46% Similarity=0.753 Sum_probs=70.2
Q ss_pred CccccceeeecCCcccccccccccchhhhhHHhhhhhcCcceEEEEecCCCcccccCcchhHHHHHHhhhcccC
Q 030090 2 AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSSN 75 (183)
Q Consensus 2 gR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKA~ELs~LCd~~vavivfs~~gk~~~~~s~~v~~vl~RY~~~~~~ 75 (183)
||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+|+|++|++|++||+..+++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~~ 74 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP 74 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC---
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999987643
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=6.7e-41 Score=226.39 Aligned_cols=76 Identities=45% Similarity=0.725 Sum_probs=73.3
Q ss_pred CccccceeeecCCcccccccccccchhhhhHHhhhhhcCcceEEEEecCCCcccccCcchhHHHHHHhhhcccCcc
Q 030090 2 AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSSNIS 77 (183)
Q Consensus 2 gR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKA~ELs~LCd~~vavivfs~~gk~~~~~s~~v~~vl~RY~~~~~~~~ 77 (183)
||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+|+||+|++||+||+.+++...
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~~~ 76 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHE 76 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSCCC
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCcccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999876544
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=4.6e-39 Score=220.95 Aligned_cols=71 Identities=41% Similarity=0.584 Sum_probs=69.6
Q ss_pred CCccccceeeecCCcccccccccccchhhhhHHhhhhhcCcceEEEEecCCCcccccCcchhHHHHHHhhh
Q 030090 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNM 71 (183)
Q Consensus 1 mgR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKA~ELs~LCd~~vavivfs~~gk~~~~~s~~v~~vl~RY~~ 71 (183)
|||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+|+||++..|+++|..
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G 86 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEG 86 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999964
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=5.8e-39 Score=217.75 Aligned_cols=70 Identities=37% Similarity=0.520 Sum_probs=68.6
Q ss_pred CCccccceeeecCCcccccccccccchhhhhHHhhhhhcCcceEEEEecCCCcccccCcchhHHHHHHhh
Q 030090 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYN 70 (183)
Q Consensus 1 mgR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKA~ELs~LCd~~vavivfs~~gk~~~~~s~~v~~vl~RY~ 70 (183)
|||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+|+||+|+.+|++|.
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~ 79 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSET 79 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999775
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=2.9e-38 Score=218.27 Aligned_cols=69 Identities=38% Similarity=0.525 Sum_probs=67.8
Q ss_pred CCccccceeeecCCcccccccccccchhhhhHHhhhhhcCcceEEEEecCCCcccccCcchhHHHHHHh
Q 030090 1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARY 69 (183)
Q Consensus 1 mgR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKA~ELs~LCd~~vavivfs~~gk~~~~~s~~v~~vl~RY 69 (183)
|||+||+|++|||+++|+|||+|||+||||||+||||||||+||||||||+|++|+|+||+|+.||+++
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~ 77 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE 77 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999974
No 6
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=92.18 E-value=1.5 Score=28.29 Aligned_cols=43 Identities=26% Similarity=0.434 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 118 LTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKN 165 (183)
Q Consensus 118 Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~ 165 (183)
||++=|.+||..+..++..|- ++.-+|+.|+.+...|.++|..
T Consensus 3 MS~ElleqLE~KIq~avdtI~-----lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 788889999999999998774 5566667777766665554444
No 7
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=90.22 E-value=2.5 Score=28.16 Aligned_cols=35 Identities=23% Similarity=0.224 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 030090 146 MNEISTLERKGAKLLEENKNLKQKVRLFDLWNHHLGFP 183 (183)
Q Consensus 146 ~~~i~~l~~k~~~l~~~n~~L~~~~~~~~~~~~~~~~~ 183 (183)
..+|..|..+...|..+|..|...- ..|.++.++|
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~---~~~~~~~~~~ 98 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTEN---ELHRQQERAP 98 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCC---
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH---HhhccccCCc
Confidence 4456777777777778887776654 4577776665
No 8
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=89.52 E-value=2.3 Score=25.65 Aligned_cols=52 Identities=29% Similarity=0.402 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 117 GLTIEELQHLETMLEQGLSRVLQ--TKGDRIMNEISTLERKGAKLLEENKNLKQ 168 (183)
Q Consensus 117 ~Ls~~eL~~Le~~Le~~L~~IR~--rK~~ll~~~i~~l~~k~~~l~~~n~~L~~ 168 (183)
..++.|..++...|..+=.+|.. +-+.-+.+++..||++.+.|+.||..|+.
T Consensus 9 pit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 9 AVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 36788888888888777555532 33445678899999999999999998863
No 9
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=86.03 E-value=3.9 Score=24.94 Aligned_cols=36 Identities=28% Similarity=0.386 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030090 135 SRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFD 174 (183)
Q Consensus 135 ~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~ 174 (183)
.+.|.|| .+++..|..+...|..+|..|...+..+.
T Consensus 22 rrsR~RK----~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 22 RRSRARK----LQRMKQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555 45678899999999999999998887654
No 10
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=82.24 E-value=6.3 Score=23.87 Aligned_cols=36 Identities=14% Similarity=0.208 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030090 135 SRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFD 174 (183)
Q Consensus 135 ~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~ 174 (183)
.+-|.|| .+.+..|+.+...|..+|..|...+..+.
T Consensus 15 ~rcR~rK----k~~~~~Le~~v~~L~~~n~~L~~ei~~L~ 50 (63)
T 2wt7_A 15 AKCRNRR----RELTDTLQAETDQLEDEKSALQTEIANLL 50 (63)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555 45578888889999999999988887544
No 11
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=82.13 E-value=5.9 Score=23.43 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030090 147 NEISTLERKGAKLLEENKNLKQKVRLFDL 175 (183)
Q Consensus 147 ~~i~~l~~k~~~l~~~n~~L~~~~~~~~~ 175 (183)
..++.|..+...|..+|..|..++..+..
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999987653
No 12
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=81.02 E-value=8.1 Score=24.27 Aligned_cols=54 Identities=19% Similarity=0.217 Sum_probs=36.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030090 114 DLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFD 174 (183)
Q Consensus 114 ~l~~Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~ 174 (183)
.+++++. +.+|+..|......||.+-. .|..|.+......++...|+.++..+.
T Consensus 14 ~~~~mgt--i~eLq~~L~~K~eELr~kd~-----~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 14 SIEGRGS--LRDLQYALQEKIEELRQRDA-----LIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp -----CH--HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hcccCCc--HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555554 88888888888888875543 257777777777778888888887664
No 13
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=79.85 E-value=3.4 Score=26.03 Aligned_cols=28 Identities=29% Similarity=0.335 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 143 DRIMNEISTLERKGAKLLEENKNLKQKV 170 (183)
Q Consensus 143 ~ll~~~i~~l~~k~~~l~~~n~~L~~~~ 170 (183)
+.+.++|..|..+...|+.||..|+.-.
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4678888999999999999999988755
No 14
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=79.78 E-value=7.6 Score=23.26 Aligned_cols=36 Identities=31% Similarity=0.366 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030090 135 SRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFD 174 (183)
Q Consensus 135 ~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~ 174 (183)
.+.|.||. +.+..|+.+...|..+|..|..++..+.
T Consensus 14 ~k~R~rKk----~~~~~Le~~~~~L~~~n~~L~~~i~~L~ 49 (61)
T 1t2k_D 14 SRSRQKRK----VWVQSLEKKAEDLSSLNGQLQSEVTLLR 49 (61)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455553 4567888888888888888888887544
No 15
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=78.80 E-value=8.6 Score=23.30 Aligned_cols=36 Identities=25% Similarity=0.294 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030090 135 SRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFD 174 (183)
Q Consensus 135 ~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~ 174 (183)
.+.|.+| .+.+..|..+...|..+|..|..++..+.
T Consensus 15 ~R~R~KK----k~~~~~le~~~~~L~~~N~~L~~~i~~L~ 50 (63)
T 1ci6_A 15 TRYRQKK----RAEQEALTGECKELEKKNEALKERADSLA 50 (63)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445444 34567777788888888888887776543
No 16
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=74.99 E-value=13 Score=23.22 Aligned_cols=41 Identities=27% Similarity=0.328 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 133 GLSRVLQTKGDRI---MNEISTLERKGAKLLEENKNLKQKVRLF 173 (183)
Q Consensus 133 ~L~~IR~rK~~ll---~~~i~~l~~k~~~l~~~n~~L~~~~~~~ 173 (183)
+-...|+||.+-+ ..++..|......+..+|..|+..+..+
T Consensus 19 AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 19 AQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556665432 3345555555555566666666666543
No 17
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=74.73 E-value=11 Score=22.57 Aligned_cols=36 Identities=25% Similarity=0.372 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030090 135 SRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFD 174 (183)
Q Consensus 135 ~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~ 174 (183)
.+-|.|| .+.+..|..+...|..+|..|...+..+.
T Consensus 14 ~k~R~rK----k~~~~~Le~~v~~L~~~n~~L~~~v~~L~ 49 (62)
T 1jnm_A 14 SKSRKRK----LERIARLEEKVKTLKAQNSELASTANMLR 49 (62)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555 44568888889999999999998887654
No 18
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=70.68 E-value=8.5 Score=22.60 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 145 IMNEISTLERKGAKLLEENKNLKQKVR 171 (183)
Q Consensus 145 l~~~i~~l~~k~~~l~~~n~~L~~~~~ 171 (183)
|..+...|+.+...|.+++..|+.++.
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566777777777777777777664
No 19
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=70.14 E-value=12 Score=20.83 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 145 IMNEISTLERKGAKLLEENKNLKQKVR 171 (183)
Q Consensus 145 l~~~i~~l~~k~~~l~~~n~~L~~~~~ 171 (183)
+......|..+...|+.||.+|++.+.
T Consensus 15 le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 15 LENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 344456777788888999999988763
No 20
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=69.62 E-value=6.7 Score=19.67 Aligned_cols=18 Identities=50% Similarity=0.442 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030090 156 GAKLLEENKNLKQKVRLF 173 (183)
Q Consensus 156 ~~~l~~~n~~L~~~~~~~ 173 (183)
...|..+|++|..+++++
T Consensus 8 lasleaenkqlkakveel 25 (31)
T 1p9i_A 8 LASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445677788888777664
No 21
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=69.21 E-value=77 Score=29.91 Aligned_cols=27 Identities=22% Similarity=0.159 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030090 149 ISTLERKGAKLLEENKNLKQKVRLFDL 175 (183)
Q Consensus 149 i~~l~~k~~~l~~~n~~L~~~~~~~~~ 175 (183)
.+.|+.+...|.++|..|++++.++..
T Consensus 1018 ~~~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 1018 KHETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357778888889999999988887663
No 22
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=68.14 E-value=29 Score=24.47 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=37.3
Q ss_pred HHHHHhHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 91 SKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKV 170 (183)
Q Consensus 91 ~~~~~Lk~eie~l~~~lr~~~ge~l~~Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~ 170 (183)
.++.+++.+++.++..+..+ -+++..|...|...- -|.+-+..++..|+++...|++++..|...+
T Consensus 68 dEl~k~~~~~~~L~~~l~~~---------~kE~~~lK~el~~~~-----~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENK---------DKEIYDLKHELIAAQ-----IKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666555443 345555555554432 2333345556666666666666666666555
Q ss_pred H
Q 030090 171 R 171 (183)
Q Consensus 171 ~ 171 (183)
.
T Consensus 134 ~ 134 (138)
T 3hnw_A 134 N 134 (138)
T ss_dssp H
T ss_pred H
Confidence 4
No 23
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=67.22 E-value=36 Score=25.34 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030090 148 EISTLERKGAKLLEENKNLKQKVRLFDL 175 (183)
Q Consensus 148 ~i~~l~~k~~~l~~~n~~L~~~~~~~~~ 175 (183)
+++.|++....|...+..|+..+..+.+
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq 116 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVRELEQ 116 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666777667777777777777765543
No 24
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=65.97 E-value=32 Score=24.18 Aligned_cols=33 Identities=30% Similarity=0.362 Sum_probs=27.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 112 GEDLHGLTIEELQHLETMLEQGLSRVLQTKGDR 144 (183)
Q Consensus 112 ge~l~~Ls~~eL~~Le~~Le~~L~~IR~rK~~l 144 (183)
.-+|+++|.++|+++-..|...+..+-+-|.-+
T Consensus 52 pL~id~ls~~~L~e~~keLh~~I~~LEeEKYDl 84 (133)
T 1j1d_C 52 PLELAGLGFAELQDLARQLHARVDKVDEERYDI 84 (133)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 457999999999999999999988877666544
No 25
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=64.83 E-value=25 Score=22.54 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 145 IMNEISTLERKGAKLLEENKNLKQKV 170 (183)
Q Consensus 145 l~~~i~~l~~k~~~l~~~n~~L~~~~ 170 (183)
+.+.|.-|+.....|.++|..|..+.
T Consensus 18 avdtI~lLqmEieELKekN~~L~~e~ 43 (81)
T 2jee_A 18 AIDTITLLQMEIEELKEKNNSLSQEV 43 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 26
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=64.41 E-value=34 Score=24.04 Aligned_cols=51 Identities=12% Similarity=0.129 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 123 LQHLETMLEQGLSRVLQTKGDRIMN--EISTLERKGAKLLEENKNLKQKVRLF 173 (183)
Q Consensus 123 L~~Le~~Le~~L~~IR~rK~~ll~~--~i~~l~~k~~~l~~~n~~L~~~~~~~ 173 (183)
...|+..++..-..+-.-|.++... +++.+.+....|++++..|+.++..+
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555433 35556666666666666666666544
No 27
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=64.26 E-value=13 Score=19.63 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030090 149 ISTLERKGAKLLEENKNLKQKVRLFD 174 (183)
Q Consensus 149 i~~l~~k~~~l~~~n~~L~~~~~~~~ 174 (183)
++.|..|+..|..+|..|..+|.-+.
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34566677777777777777665443
No 28
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=64.16 E-value=34 Score=23.92 Aligned_cols=57 Identities=19% Similarity=0.307 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030090 117 GLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFD 174 (183)
Q Consensus 117 ~Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~ 174 (183)
++|++++..+-......-..+. ...+++.+++..+..+...|+.....|..++..+.
T Consensus 59 G~sL~eIk~~l~~~~~~~~~~~-~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 115 (142)
T 3gp4_A 59 GLSIEALIDYLALFREGEHTLE-ARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYD 115 (142)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888877665433211111 22335555566666666666666666665555443
No 29
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=62.56 E-value=15 Score=19.49 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030090 140 TKGDRIMNEISTLERKGAKLLEE 162 (183)
Q Consensus 140 rK~~ll~~~i~~l~~k~~~l~~~ 162 (183)
||++-....|+.|+++...|.++
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Q 29 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQ 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHhhHHHHHHHHHHHHHH
Confidence 66666666666666555555444
No 30
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=61.74 E-value=17 Score=19.85 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 144 RIMNEISTLERKGAKLLEENKNLKQKVR 171 (183)
Q Consensus 144 ll~~~i~~l~~k~~~l~~~n~~L~~~~~ 171 (183)
-+.+.....-.+++.|.++|..|..++.
T Consensus 10 ~LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 10 ELNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666789999999999988874
No 31
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=60.29 E-value=1.3 Score=30.05 Aligned_cols=42 Identities=24% Similarity=0.298 Sum_probs=33.8
Q ss_pred ecCCcccccccccccchhhhhHHhhhhhcCcceEEEEecCCCccccc
Q 030090 11 IDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFES 57 (183)
Q Consensus 11 Ien~~~R~~Tf~KRr~GL~KKA~ELs~LCd~~vavivfs~~gk~~~~ 57 (183)
|.++.-...||-=.-..|.++.-+|+.+| ++.|+|.|+-|-.
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gkef~l 62 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQSFRL 62 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCEEEE
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCEEEe
Confidence 45556667778888888999999999888 9999999986643
No 32
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=59.64 E-value=37 Score=22.86 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=39.0
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 111 RGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLF 173 (183)
Q Consensus 111 ~ge~l~~Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~ 173 (183)
..-+|++||.++|+++-..|...+..+-+-|.- |..+...-.-+-+.|..+|..+
T Consensus 35 ~pL~id~l~~~~L~e~~keLh~~I~~lEeEKYD--------lE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 35 KPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYD--------FAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp CCCCCSSSCSSHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhh--------HHHHHHhhhhHHHHHHHHHHHh
Confidence 345899999999999999999988877666554 3333444444556677777666
No 33
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=59.43 E-value=37 Score=22.82 Aligned_cols=52 Identities=17% Similarity=0.079 Sum_probs=35.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 114 DLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLF 173 (183)
Q Consensus 114 ~l~~Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~ 173 (183)
+|++||.++|+++-..|...+..+-+-|.-+ ..+...-.-+-+.|..+|..+
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDl--------E~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDL--------QEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhH--------HHHHHhhhHHHHHHHHHHHHh
Confidence 8999999999999999999888876666544 222332333445555555544
No 34
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=58.54 E-value=53 Score=24.27 Aligned_cols=33 Identities=30% Similarity=0.362 Sum_probs=27.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 112 GEDLHGLTIEELQHLETMLEQGLSRVLQTKGDR 144 (183)
Q Consensus 112 ge~l~~Ls~~eL~~Le~~Le~~L~~IR~rK~~l 144 (183)
.-+|++||.++|+++-..|...+..+-+-|.-+
T Consensus 52 PLnid~Lse~~L~e~ckELh~~I~~LEeEKYDl 84 (180)
T 1j1e_C 52 PLELAGLGFAELQDLARQLHARVDKVDEERYDI 84 (180)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 458999999999999999999988887666654
No 35
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=57.38 E-value=45 Score=23.40 Aligned_cols=60 Identities=12% Similarity=0.130 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 030090 117 GLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFDLWN 177 (183)
Q Consensus 117 ~Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~~~~ 177 (183)
++|++++..+-......-..+ ....+++.+++..+..+...|++....|..++..+..+.
T Consensus 73 G~sL~eIk~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~ 132 (148)
T 3gpv_A 73 GMPIQKIKQFIDWSMEGDSTI-LHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEI 132 (148)
T ss_dssp TCCHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CCCHHHHHHHHHhhhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588899888776443321112 122346677777788888888888888888777666544
No 36
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=57.11 E-value=24 Score=23.52 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 030090 147 NEISTLERKGAKLLEENKNLKQKVRLFDLW 176 (183)
Q Consensus 147 ~~i~~l~~k~~~l~~~n~~L~~~~~~~~~~ 176 (183)
++++.++++...|..||..|++.+..+..|
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~ 41 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQ 41 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777887777777765544
No 37
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=56.73 E-value=23 Score=19.46 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=17.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 030090 116 HGLTIEELQHLETMLEQGLSRVLQ 139 (183)
Q Consensus 116 ~~Ls~~eL~~Le~~Le~~L~~IR~ 139 (183)
+++|++||-.||..|...-+++.+
T Consensus 15 egfspeelaaleselqalekklaa 38 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKLAA 38 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999888765444433
No 38
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=56.40 E-value=39 Score=22.03 Aligned_cols=28 Identities=11% Similarity=0.304 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 145 IMNEISTLERKGAKLLEENKNLKQKVRL 172 (183)
Q Consensus 145 l~~~i~~l~~k~~~l~~~n~~L~~~~~~ 172 (183)
+...|..|.++...+..+-..|+..+.+
T Consensus 77 i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 77 LQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777776643
No 39
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=55.79 E-value=22 Score=19.02 Aligned_cols=21 Identities=33% Similarity=0.281 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030090 151 TLERKGAKLLEENKNLKQKVR 171 (183)
Q Consensus 151 ~l~~k~~~l~~~n~~L~~~~~ 171 (183)
.|..|+..|..+|..|..+|.
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~ 25 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVA 25 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHH
Confidence 344444445555555544444
No 40
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=55.60 E-value=55 Score=23.56 Aligned_cols=48 Identities=23% Similarity=0.268 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 119 TIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQ 168 (183)
Q Consensus 119 s~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~ 168 (183)
|+.|...|+..-...+.+|+.++.+| +++...+-.-++|.+.|..+..
T Consensus 3 s~qe~~~Le~Ek~~~~~rI~~K~~~L--qeL~~Q~vafknLv~RN~~~e~ 50 (155)
T 2aze_A 3 FAQECQNLEVERQRRLERIKQKQSQL--QELILQQIAFKNLVQRNRHAEQ 50 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 67888899998888889998666543 4444455666788888887764
No 41
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=55.53 E-value=45 Score=22.55 Aligned_cols=57 Identities=14% Similarity=0.028 Sum_probs=39.6
Q ss_pred HhhHHHHHHhHHHHHHHHHHHHhh--cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 87 QLENSKYLSLSREIADKSRQLRQM--RGEDLHGLTIEELQHLETMLEQGLSRVLQTKGD 143 (183)
Q Consensus 87 q~~~~~~~~Lk~eie~l~~~lr~~--~ge~l~~Ls~~eL~~Le~~Le~~L~~IR~rK~~ 143 (183)
..+..++.+|+-++..|.+.++.- .+.+=.-||..+=+.+-.....+|...-.+|.+
T Consensus 11 EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKea~I~s~~~~Lss~A~~KIe 69 (110)
T 2oa5_A 11 EEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGAVAMRKIE 69 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334677888999999988888752 223445699999999888888888877766644
No 42
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=54.26 E-value=22 Score=19.18 Aligned_cols=15 Identities=47% Similarity=0.392 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 030090 149 ISTLERKGAKLLEEN 163 (183)
Q Consensus 149 i~~l~~k~~~l~~~n 163 (183)
|..|+.+...|++|.
T Consensus 17 i~~l~~kl~~LkeEK 31 (38)
T 2l5g_A 17 ILKLEEKLLALQEEK 31 (38)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 43
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=53.96 E-value=20 Score=18.78 Aligned_cols=24 Identities=38% Similarity=0.451 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 150 STLERKGAKLLEENKNLKQKVRLF 173 (183)
Q Consensus 150 ~~l~~k~~~l~~~n~~L~~~~~~~ 173 (183)
+.|..|+..|..+|..|..+|.-+
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RL 26 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARL 26 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHH
Confidence 345567777777777777776543
No 44
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=51.32 E-value=44 Score=21.14 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 150 STLERKGAKLLEENKNLKQKVRLF 173 (183)
Q Consensus 150 ~~l~~k~~~l~~~n~~L~~~~~~~ 173 (183)
..++.+...|..+|..|+.+|..+
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L 62 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQL 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666777777777666543
No 45
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=50.31 E-value=52 Score=21.72 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030090 131 EQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFDL 175 (183)
Q Consensus 131 e~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~~ 175 (183)
+.++..+..++. .+...|..|.++...+..+-..++..+.++.+
T Consensus 69 ~ea~~~L~~~~e-~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 69 DKAVAELKEKIE-TLEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334444443433 33777888888888888888888888877654
No 46
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=49.01 E-value=32 Score=21.76 Aligned_cols=29 Identities=28% Similarity=0.283 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030090 147 NEISTLERKGAKLLEENKNLKQKVRLFDL 175 (183)
Q Consensus 147 ~~i~~l~~k~~~l~~~n~~L~~~~~~~~~ 175 (183)
+.|..|+.....|.+++..|+..+.....
T Consensus 50 ~YI~~Lq~~~~~L~~e~~~L~~~~~~~~~ 78 (82)
T 1am9_A 50 DYIRFLQHSNQKLKQENLSLRTAVHKSKS 78 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45677888888899999999888876543
No 47
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=48.82 E-value=28 Score=18.28 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 150 STLERKGAKLLEENKNLKQKVRLF 173 (183)
Q Consensus 150 ~~l~~k~~~l~~~n~~L~~~~~~~ 173 (183)
+.|..|...|..+|..|..+|.-+
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHH
Confidence 445556666666666666665543
No 48
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=48.39 E-value=35 Score=19.71 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030090 151 TLERKGAKLLEENKNLKQKVR 171 (183)
Q Consensus 151 ~l~~k~~~l~~~n~~L~~~~~ 171 (183)
.|-+.+..|..||..|+.++.
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~ 27 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELE 27 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 344445555666666666554
No 49
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=47.62 E-value=11 Score=23.94 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=20.3
Q ss_pred EEEEecCCCcccccCc-chhHHHHHH
Q 030090 44 GVIIFSATGKLFESSS-SSMKDIIAR 68 (183)
Q Consensus 44 avivfs~~gk~~~~~s-~~v~~vl~R 68 (183)
-|.||.|.|.++++|. ..+.++...
T Consensus 7 ~i~v~tP~G~~~~lp~GaT~~D~A~~ 32 (78)
T 3hvz_A 7 EVFVFTPKGDVISLPIGSTVIDFAYA 32 (78)
T ss_dssp EEEEECTTSCEEEEETTCBHHHHHHH
T ss_pred eEEEECCCCCEEEecCCCCHHHHHHH
Confidence 3789999999999998 677777654
No 50
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=44.82 E-value=1.4e+02 Score=25.28 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 147 NEISTLERKGAKLLEENKNLKQKVRLF 173 (183)
Q Consensus 147 ~~i~~l~~k~~~l~~~n~~L~~~~~~~ 173 (183)
.+++..+++...+.+++..+..++...
T Consensus 551 ~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 551 KQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 334444455556666666666655543
No 51
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=44.28 E-value=39 Score=26.33 Aligned_cols=42 Identities=17% Similarity=0.321 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 121 EELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLK 167 (183)
Q Consensus 121 ~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~ 167 (183)
+.+.+|+.+++.. ..+++.+.+.+..++++...|++|+..|+
T Consensus 54 ~~l~eL~~ql~~L-----~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 54 RDIHQLEARIDSL-----AARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHH-----TTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455555555443 24445556666666666666666666654
No 52
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=43.86 E-value=51 Score=19.74 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 144 RIMNEISTLERKGAKLLEENKNLKQKVRL 172 (183)
Q Consensus 144 ll~~~i~~l~~k~~~l~~~n~~L~~~~~~ 172 (183)
-+..+...|..+...|..|+..|..-+.+
T Consensus 34 ~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 34 ELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555566777777777777777766544
No 53
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=43.71 E-value=55 Score=20.22 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 137 VLQTKGDRIMNEISTLERKGAKLLEENKNLK 167 (183)
Q Consensus 137 IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~ 167 (183)
|+..|...-.+++..|....+.|+++...++
T Consensus 36 I~qAk~~~r~DEV~tLe~NLrEL~~ei~~~q 66 (69)
T 1z0k_B 36 IRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445557888888877777777766554
No 54
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=42.49 E-value=19 Score=26.23 Aligned_cols=36 Identities=17% Similarity=0.446 Sum_probs=27.2
Q ss_pred hhhcCcceEEEEecCCCcccc-cCc-------chhHHHHHHhhh
Q 030090 36 SVLCDAEVGVIIFSATGKLFE-SSS-------SSMKDIIARYNM 71 (183)
Q Consensus 36 s~LCd~~vavivfs~~gk~~~-~~s-------~~v~~vl~RY~~ 71 (183)
+.-|++.|-+++|||.-+.|. |-. ..+..||+.|+.
T Consensus 116 ~~~ceiKvLiLlYs~~k~aflGfIPnDQ~~Fv~rlr~Viq~~k~ 159 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNGIRQVITNHKQ 159 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSEEEEEESSHHHHHHHHHHHHHHHHT
T ss_pred CCCcceEEEEEEEcCCcceeeeeccCCHHHHHHHHHHHHHHHHH
Confidence 456999999999999999886 544 266677776654
No 55
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=41.99 E-value=45 Score=24.74 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030090 145 IMNEISTLERKGAKLLEENKNLKQKVRLFD 174 (183)
Q Consensus 145 l~~~i~~l~~k~~~l~~~n~~L~~~~~~~~ 174 (183)
+++.+..|+.+...|+++|..|+.+-..+.
T Consensus 150 ~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l 179 (184)
T 3w03_C 150 CLDTIAENQAKNEHLQKENERLLRDWNDVQ 179 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466678888888889999988888776543
No 56
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=41.77 E-value=17 Score=24.19 Aligned_cols=32 Identities=9% Similarity=0.231 Sum_probs=22.5
Q ss_pred cCcceEEEEecCCCcccccCc-chhHHHHHHhhh
Q 030090 39 CDAEVGVIIFSATGKLFESSS-SSMKDIIARYNM 71 (183)
Q Consensus 39 Cd~~vavivfs~~gk~~~~~s-~~v~~vl~RY~~ 71 (183)
|+---.|+|+ |+|..|...+ ..+.+||+.|..
T Consensus 59 C~~gP~v~V~-P~~~~y~~vt~e~v~~il~~~l~ 91 (110)
T 1m2d_A 59 SMMGPVVVVY-PDGVWYGQVKPEDVDEIVEKHLK 91 (110)
T ss_dssp GGGCSCEEEE-TTTEEECSCCGGGHHHHHHHTTT
T ss_pred cCCCCEEEEE-eCCEEEecCCHHHHHHHHHHHHH
Confidence 4444445555 8888887666 699999998753
No 57
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=41.31 E-value=33 Score=25.38 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030090 147 NEISTLERKGAKLLEENKNLKQK 169 (183)
Q Consensus 147 ~~i~~l~~k~~~l~~~n~~L~~~ 169 (183)
++|..|+.+..-|++||..|..+
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678889999999999998764
No 58
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=40.56 E-value=33 Score=18.27 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030090 152 LERKGAKLLEENKNLKQKVR 171 (183)
Q Consensus 152 l~~k~~~l~~~n~~L~~~~~ 171 (183)
|..|+..|..+|..|..+|.
T Consensus 6 LE~kVEeLl~~~~~Le~EV~ 25 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVA 25 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHH
Confidence 33344444444444444443
No 59
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=40.40 E-value=1.2e+02 Score=23.14 Aligned_cols=22 Identities=23% Similarity=0.169 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q 030090 119 TIEELQHLETMLEQGLSRVLQT 140 (183)
Q Consensus 119 s~~eL~~Le~~Le~~L~~IR~r 140 (183)
+.+|+..|...++..-.++...
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~l 109 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQA 109 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777665555433
No 60
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=38.71 E-value=21 Score=24.22 Aligned_cols=24 Identities=38% Similarity=0.430 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 149 ISTLERKGAKLLEENKNLKQKVRL 172 (183)
Q Consensus 149 i~~l~~k~~~l~~~n~~L~~~~~~ 172 (183)
++.|..+...|+-||+.|+++|..
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567788888999999999999864
No 61
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=38.46 E-value=44 Score=17.55 Aligned_cols=23 Identities=22% Similarity=0.172 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030090 150 STLERKGAKLLEENKNLKQKVRL 172 (183)
Q Consensus 150 ~~l~~k~~~l~~~n~~L~~~~~~ 172 (183)
+.|..|+..|..+|..|...|.-
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~R 26 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVAR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHH
Confidence 33444555555556555555543
No 62
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=38.31 E-value=45 Score=17.55 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030090 151 TLERKGAKLLEENKNLKQKVRL 172 (183)
Q Consensus 151 ~l~~k~~~l~~~n~~L~~~~~~ 172 (183)
.|..|...|..+|..|..+|.-
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~R 26 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELAR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHH
Confidence 3444555555555555555543
No 63
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=38.23 E-value=69 Score=20.14 Aligned_cols=19 Identities=21% Similarity=0.329 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030090 152 LERKGAKLLEENKNLKQKV 170 (183)
Q Consensus 152 l~~k~~~l~~~n~~L~~~~ 170 (183)
+......|..+|..|+.++
T Consensus 59 l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 59 AVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444
No 64
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=37.51 E-value=75 Score=19.85 Aligned_cols=28 Identities=25% Similarity=0.240 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 145 IMNEISTLERKGAKLLEENKNLKQKVRL 172 (183)
Q Consensus 145 l~~~i~~l~~k~~~l~~~n~~L~~~~~~ 172 (183)
+.+++..|+.....|.++|..|..++..
T Consensus 52 L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 52 MRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666677777777777654
No 65
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=37.49 E-value=63 Score=18.97 Aligned_cols=26 Identities=19% Similarity=0.425 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 146 MNEISTLERKGAKLLEENKNLKQKVR 171 (183)
Q Consensus 146 ~~~i~~l~~k~~~l~~~n~~L~~~~~ 171 (183)
.+.+-.|+-....|+++|..|.+-++
T Consensus 9 VDtVYaLkDqV~eL~qe~k~m~k~lE 34 (56)
T 2w6b_A 9 VDTVYALKDEVQELRQDNKKMKKSLE 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555544443
No 66
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=36.25 E-value=99 Score=20.90 Aligned_cols=16 Identities=19% Similarity=0.208 Sum_probs=7.9
Q ss_pred HHHHhHHHHHHHHHHH
Q 030090 92 KYLSLSREIADKSRQL 107 (183)
Q Consensus 92 ~~~~Lk~eie~l~~~l 107 (183)
...+|..+++.++...
T Consensus 11 ~~~~L~~E~e~~k~K~ 26 (111)
T 2v66_B 11 DNQRLKYEVEALKEKL 26 (111)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555554444
No 67
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=36.12 E-value=57 Score=18.07 Aligned_cols=37 Identities=32% Similarity=0.406 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 118 LTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEE 162 (183)
Q Consensus 118 Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~ 162 (183)
+|-+||.+=-..++.-+.++ .++|+.||++...|.+.
T Consensus 2 ~tk~~l~qkI~kVdrEI~Kt--------e~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 2 LSKEELIQNMDRVDREITMV--------EQQISKLKKKQQQLEEE 38 (42)
T ss_dssp CSSSHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHh
Confidence 45566666555555555544 35577888888887764
No 68
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=36.02 E-value=67 Score=18.89 Aligned_cols=27 Identities=22% Similarity=0.159 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 144 RIMNEISTLERKGAKLLEENKNLKQKV 170 (183)
Q Consensus 144 ll~~~i~~l~~k~~~l~~~n~~L~~~~ 170 (183)
.+..+...|+.....|.+++..|...+
T Consensus 33 ~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 33 DLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455556666666666666666554
No 69
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=35.28 E-value=87 Score=19.99 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030090 148 EISTLERKGAKLLEENKNLKQKVRLFD 174 (183)
Q Consensus 148 ~i~~l~~k~~~l~~~n~~L~~~~~~~~ 174 (183)
+...+......|..+|..|..++..+.
T Consensus 60 ~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 60 EEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444445567778888887776553
No 70
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=35.20 E-value=50 Score=17.22 Aligned_cols=22 Identities=9% Similarity=0.068 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030090 151 TLERKGAKLLEENKNLKQKVRL 172 (183)
Q Consensus 151 ~l~~k~~~l~~~n~~L~~~~~~ 172 (183)
.|..|...|..+|..|..+|.-
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~R 25 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLAR 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHH
Confidence 3444555566666666655543
No 71
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=35.08 E-value=1.2e+02 Score=21.64 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030090 147 NEISTLERKGAKLLEENKNLK 167 (183)
Q Consensus 147 ~~i~~l~~k~~~l~~~n~~L~ 167 (183)
-+.+.+..+...|++||..|-
T Consensus 110 lq~n~lE~kl~kLq~EN~~LV 130 (152)
T 3a7p_A 110 IENNVLQQKLSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777775543
No 72
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=34.53 E-value=1.1e+02 Score=20.75 Aligned_cols=40 Identities=30% Similarity=0.278 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 128 TMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQ 168 (183)
Q Consensus 128 ~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~ 168 (183)
..++.-+..+|.--....+..++ |..+...|.+|-.+|+.
T Consensus 65 ~~~E~di~~lrK~lD~~~l~r~d-LE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 65 EEAENTLQSFRQDVDNASLARLD-LERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 33444444444333444444444 55666666666666553
No 73
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=33.91 E-value=21 Score=26.26 Aligned_cols=33 Identities=9% Similarity=0.010 Sum_probs=26.0
Q ss_pred hcCcceEEEEecCCCcccccCcchhHHHHHHhh
Q 030090 38 LCDAEVGVIIFSATGKLFESSSSSMKDIIARYN 70 (183)
Q Consensus 38 LCd~~vavivfs~~gk~~~~~s~~v~~vl~RY~ 70 (183)
..++.++|||||++=-...||-..+..+++...
T Consensus 60 Ie~Sri~IvV~S~ny~~S~WCl~EL~~i~~~~~ 92 (176)
T 3jrn_A 60 IEVSRFAVVVVSENYAASSWCLDELVTIMDFEK 92 (176)
T ss_dssp CTTEEEEEEEECTTTTTCHHHHHHHHHHHHHHH
T ss_pred HHhCCEEEEEecCCcCCChhHHHHHHHHHhhhc
Confidence 457889999999986666677778888888654
No 74
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=33.16 E-value=93 Score=19.66 Aligned_cols=57 Identities=14% Similarity=0.190 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030090 117 GLTIEELQHLETMLEQGLS-RVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFD 174 (183)
Q Consensus 117 ~Ls~~eL~~Le~~Le~~L~-~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~ 174 (183)
|+|++|+..+-......-. .+ ..-..++.+++..+..+...|+.--..|...+..+.
T Consensus 16 GfsL~eIk~~l~~~~~~~~~~~-~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~ 73 (99)
T 1q08_A 16 GFSLESIRELLSIRIDPEHHTC-QESKGIVQERLQEVEARIAELQSMQRSLQRLNDACC 73 (99)
T ss_dssp TCCHHHHHHHHHHHHCGGGCBH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHhCCCcccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5888998887654321100 01 122345666666666666666666666666665443
No 75
>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.41 E-value=41 Score=22.68 Aligned_cols=42 Identities=14% Similarity=0.166 Sum_probs=27.9
Q ss_pred Hhhhhhc--------CcceEEEEecCCCcccccCc---chhHHHHHHhhhccc
Q 030090 33 EELSVLC--------DAEVGVIIFSATGKLFESSS---SSMKDIIARYNMHSS 74 (183)
Q Consensus 33 ~ELs~LC--------d~~vavivfs~~gk~~~~~s---~~v~~vl~RY~~~~~ 74 (183)
+=|||.+ .+.-..|...++|..+.... +++.++|+-|...+.
T Consensus 52 y~LSv~~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~eLV~~y~~~~~ 104 (125)
T 2dm0_A 52 YTISVFMGARRSTEAAIKHYQIKKNDSGQWYVAERHAFQSIPELIWYHQHNAA 104 (125)
T ss_dssp EEEEEECCCSSSSSCCEEEEEEEECTTCCEESSSSCCCSSHHHHHHHHTTCCC
T ss_pred EEEEEEeccccCCCCcEEEEEEEEcCCCCEEECCCCccCCHHHHHHHhhhCCC
Confidence 4577776 34445555666776554332 799999999987653
No 76
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=32.36 E-value=10 Score=18.48 Aligned_cols=12 Identities=25% Similarity=0.448 Sum_probs=8.5
Q ss_pred cccccccccccc
Q 030090 15 TARQVTFSKRRR 26 (183)
Q Consensus 15 ~~R~~Tf~KRr~ 26 (183)
+.|.+-|+||++
T Consensus 15 sKRRlvf~~rkp 26 (26)
T 2zvv_Y 15 SKRRLIFSXXXX 26 (26)
T ss_pred hhceEEEEeccC
Confidence 567777888763
No 77
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=32.19 E-value=76 Score=18.36 Aligned_cols=33 Identities=27% Similarity=0.310 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 135 SRVLQTKGDRIMNEISTLERKGAKLLEENKNLK 167 (183)
Q Consensus 135 ~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~ 167 (183)
+=|...|.+--.+++..|....+.|+++...++
T Consensus 16 ~~I~qAk~~~r~DEV~~Le~NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 16 SFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 48 (51)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555568899999888888888877665
No 78
>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=30.57 E-value=83 Score=22.99 Aligned_cols=85 Identities=16% Similarity=0.096 Sum_probs=47.4
Q ss_pred HHHHhHHHHHHHHHHHHhhcCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 030090 92 KYLSLSREIADKSRQLRQMRGEDLHG--LTIEELQHLETMLEQGLSRVLQTKGDRIM-NEISTLERKGAKLLEENKNLKQ 168 (183)
Q Consensus 92 ~~~~Lk~eie~l~~~lr~~~ge~l~~--Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~-~~i~~l~~k~~~l~~~n~~L~~ 168 (183)
-|.+.+.-+..|+.+.++..+.+++. ..+++|..+...+.. |..+|-+|.=.+. -..+...--.+..-||...+..
T Consensus 81 FY~rvr~yI~~Le~ei~~~~~~d~~~~~~kl~elk~~~~~l~~-L~~~Ri~KIv~la~~~~~~~eil~rLTpEEk~iy~~ 159 (171)
T 3anw_B 81 LYERAEFYAYYLENYVRLNPRESVDTINVKLTKLANLRKKLRD-LKLIRFNKILKAVMLRPNSLELLSRLAPEERRIYLQ 159 (171)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-------CCHHHHHHHHHHHHHH-HHHHHHHHHHHHHTC--CCHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCcHHHHhcCCHHHHHHHHH
Confidence 46777888888999888877767665 336789888888877 5677777753222 1111110012223555555555
Q ss_pred HHHHHhhhh
Q 030090 169 KVRLFDLWN 177 (183)
Q Consensus 169 ~~~~~~~~~ 177 (183)
-...+..|-
T Consensus 160 l~~~i~~w~ 168 (171)
T 3anw_B 160 MSKIRNEWL 168 (171)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 555666664
No 79
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=30.23 E-value=2.5e+02 Score=23.79 Aligned_cols=40 Identities=13% Similarity=0.003 Sum_probs=15.8
Q ss_pred hhhhhHHhhhhhcCcceEEEEecCCCcccccCc-c-hhHHHHHHhhh
Q 030090 27 GLFKKAEELSVLCDAEVGVIIFSATGKLFESSS-S-SMKDIIARYNM 71 (183)
Q Consensus 27 GL~KKA~ELs~LCd~~vavivfs~~gk~~~~~s-~-~v~~vl~RY~~ 71 (183)
|+.||.-|.. -||.-|.+ +++..=.+|. . .+.+.+.+|+.
T Consensus 55 ~~~~~~~~~~--~~a~~c~~---~~~~~G~~CPTtC~l~D~L~k~q~ 96 (464)
T 1m1j_B 55 QAMKKGPIIY--PDAGGCKH---PLDELGVLCPTGCELQTTLLKQEK 96 (464)
T ss_dssp --------CC--CCCSCEEC---SSTTTCEEEECTTHHHHHHHHHHH
T ss_pred hhhccCcccC--CCCCCccc---cCCCccCcCCCccHHHHHHHHhhh
Confidence 4456666555 44444433 3333333333 2 66777777765
No 80
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=30.07 E-value=81 Score=18.00 Aligned_cols=30 Identities=27% Similarity=0.299 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 136 RVLQTKGDRIMNEISTLERKGAKLLEENKN 165 (183)
Q Consensus 136 ~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~ 165 (183)
=|+..|...-.+++..|.+..+.|+.|...
T Consensus 16 ~I~qAk~~rRfdEV~~L~~NL~EL~~E~~~ 45 (48)
T 3v1a_A 16 FIHQAKAAGRMDEVRTLQENLHQLMHEYFQ 45 (48)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHh
Confidence 344445555578889998888888777543
No 81
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=29.05 E-value=1e+02 Score=19.47 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 145 IMNEISTLERKGAKLLEENKNLKQKVR 171 (183)
Q Consensus 145 l~~~i~~l~~k~~~l~~~n~~L~~~~~ 171 (183)
+..+|+.++.....|.++|..|..-..
T Consensus 39 Lh~~ie~~~eEi~~LkeEN~~L~el~~ 65 (79)
T 2zxx_A 39 LHKEIEQKDSEIARLRKENKDLAEVAE 65 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555666666666654443
No 82
>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}
Probab=28.93 E-value=48 Score=21.71 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=27.1
Q ss_pred Hhhhhhc--------CcceEEEEecCCCcccccCc---chhHHHHHHhhhccc
Q 030090 33 EELSVLC--------DAEVGVIIFSATGKLFESSS---SSMKDIIARYNMHSS 74 (183)
Q Consensus 33 ~ELs~LC--------d~~vavivfs~~gk~~~~~s---~~v~~vl~RY~~~~~ 74 (183)
+=||+.+ .+.-..|...++|..+.... +++.++|+-|...+.
T Consensus 47 y~LSv~~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~~y~~~~~ 99 (110)
T 2ekx_A 47 YTVSLFSKAVNDKKGTVKHYHVHTNAENKLYLAENYCFDSIPKLIHYHQHNSA 99 (110)
T ss_dssp EEEEECCCCSSCSSCCCEEEECEECTTCCEESSTTCCCSCHHHHHHHHHHSCC
T ss_pred EEEEEEeccccCCCCcEEEEEEEECCCCCEEECCCCccCCHHHHHHHHeeCCC
Confidence 3466665 34444555566776554332 799999999998663
No 83
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=28.53 E-value=1.6e+02 Score=20.82 Aligned_cols=61 Identities=13% Similarity=0.303 Sum_probs=36.6
Q ss_pred HHHHHHhHHHHHHHHHHHHhhc---------------CC--------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 90 NSKYLSLSREIADKSRQLRQMR---------------GE--------DLHGLTIEELQHLETMLEQGLSRVLQTKGDRIM 146 (183)
Q Consensus 90 ~~~~~~Lk~eie~l~~~lr~~~---------------ge--------~l~~Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~ 146 (183)
-.+..++++++++++.++.... |. +-+-+..+|...|+..|-.+++....+-.+...
T Consensus 47 mkQAQkmQ~km~k~QeeL~~~eveg~sGgGlVkVtvnG~~ev~~I~Idp~lldpeD~E~LeDLI~aAvNdA~~ka~e~~~ 126 (143)
T 1ybx_A 47 VKQAQKMQRDMERVQEELKEKTVEASAGGGAVTVVATGRKDIKEITIKPEVVDPDDVEMLQDLILAAVNEALRKADEMVT 126 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCEEEEEETTTTEEEEEETTCCEEEEEECGGGCCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCEEEEEECCCEEEEEEecCceEEEEEECHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888888876643 11 112244566677777777777766655555544
Q ss_pred HHHH
Q 030090 147 NEIS 150 (183)
Q Consensus 147 ~~i~ 150 (183)
+.+.
T Consensus 127 e~M~ 130 (143)
T 1ybx_A 127 AEIS 130 (143)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 84
>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET: PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A* 1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L* 1cwe_A*
Probab=28.16 E-value=43 Score=21.62 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=27.3
Q ss_pred HHhhhhhc-----C--cceEEEEecCCCcccccCc---chhHHHHHHhhhccc
Q 030090 32 AEELSVLC-----D--AEVGVIIFSATGKLFESSS---SSMKDIIARYNMHSS 74 (183)
Q Consensus 32 A~ELs~LC-----d--~~vavivfs~~gk~~~~~s---~~v~~vl~RY~~~~~ 74 (183)
.+=||+.+ + +.-..|...++|..+..+. +++.++|+-|...+.
T Consensus 41 ~~~LSv~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LI~~y~~~~~ 93 (105)
T 1lkk_A 41 SFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRHYTNASD 93 (105)
T ss_dssp CEEEEEEEEETTTEEEEEEEEEEECTTSCEESSTTSCBSSHHHHHHHHHHCCT
T ss_pred cEEEEEEEcccCCCCcEEEEEEEECCCCCEEECCCceeCCHHHHHHHHhhCCC
Confidence 34566666 2 3334444556776554433 799999999998654
No 85
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=28.12 E-value=59 Score=15.79 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030090 151 TLERKGAKLLEENKNLKQKVRLF 173 (183)
Q Consensus 151 ~l~~k~~~l~~~n~~L~~~~~~~ 173 (183)
.|+.+...|.+|-..|...+..+
T Consensus 4 rlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHh
Confidence 34455555555555555555443
No 86
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=27.74 E-value=1.2e+02 Score=19.41 Aligned_cols=20 Identities=35% Similarity=0.443 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030090 152 LERKGAKLLEENKNLKQKVR 171 (183)
Q Consensus 152 l~~k~~~l~~~n~~L~~~~~ 171 (183)
++.+...|..+|..|+.+|.
T Consensus 41 ~~~r~~~Le~EN~~Lr~~v~ 60 (87)
T 1hjb_A 41 TQHKVLELTAENERLQKKVE 60 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555444
No 87
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=27.21 E-value=95 Score=23.98 Aligned_cols=56 Identities=14% Similarity=0.214 Sum_probs=6.3
Q ss_pred eeecCCcccccccccccchhhhhHHhhhhhcCcceEEEEecCCCcccccCc---chhHHHHHHhhh
Q 030090 9 RKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSS---SSMKDIIARYNM 71 (183)
Q Consensus 9 k~Ien~~~R~~Tf~KRr~GL~KKA~ELs~LCd~~vavivfs~~gk~~~~~s---~~v~~vl~RY~~ 71 (183)
..|++...=.+|+-||-.||..|..+|..--+-+=+| .+|.|+. ..+-.+-++|.+
T Consensus 117 ~~iev~~~~~itmrkri~~Itqrlg~ltL~~~~~~eI-------dLFewA~~L~q~i~~ln~k~~~ 175 (246)
T 1z56_A 117 CRMQDDEVWKVVMELESSAIIRKIAELTLHPVKKGEI-------DLFEMADKLYKDICCVNDSYRN 175 (246)
T ss_dssp -------------------------------------------------CTTSGGGTTHHHHHHHH
T ss_pred cCceeCCEEEEEEeehhhHHHhhheeEEeecCccchh-------hHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555668999999999999988775443333333 3556633 234444555554
No 88
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=27.14 E-value=1.3e+02 Score=19.43 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 143 DRIMNEISTLERKGAKLLEENKNLKQKVRLF 173 (183)
Q Consensus 143 ~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~ 173 (183)
..+..+|..|++....+..++..|..++..+
T Consensus 52 ~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl 82 (93)
T 3s4r_A 52 DLYEEEMRELRRQVDQLTNDKARVEVERDNL 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778888888888888887777777653
No 89
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=26.95 E-value=96 Score=19.16 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q 030090 118 LTIEELQHLETMLEQGLSRVLQT 140 (183)
Q Consensus 118 Ls~~eL~~Le~~Le~~L~~IR~r 140 (183)
++.+++.+..+.|...|.+||.|
T Consensus 4 ls~~~~e~ir~IL~~NLykiRqr 26 (70)
T 2ygg_A 4 LSKDKEEEIRKILRNNLQKTRQR 26 (70)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999955
No 90
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=26.81 E-value=5.8 Score=25.34 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=27.0
Q ss_pred hhhHHhhhhhcCcceEEEEecCCCcccccCcchhHHHHHHhhhcc
Q 030090 29 FKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHS 73 (183)
Q Consensus 29 ~KKA~ELs~LCd~~vavivfs~~gk~~~~~s~~v~~vl~RY~~~~ 73 (183)
.|+|+|.+.+++=|.|++.|. ++-.-|+||...-
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~-----------g~~~qI~k~l~~~ 49 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQ-----------GVLDQMNKYLYSV 49 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHH-----------HHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcChHHHHHHHH-----------HHHHHHHHHHHhc
Confidence 589999999999888877664 5677788887643
No 91
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=26.63 E-value=77 Score=16.65 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030090 150 STLERKGAKLLEENKNLKQKVRL 172 (183)
Q Consensus 150 ~~l~~k~~~l~~~n~~L~~~~~~ 172 (183)
+.|..|+..|..+|..|..+|.-
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~R 26 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELAR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHH
Confidence 34445666666666666665543
No 92
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=26.57 E-value=1.1e+02 Score=18.29 Aligned_cols=41 Identities=12% Similarity=0.097 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 127 ETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLK 167 (183)
Q Consensus 127 e~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~ 167 (183)
..++...-+=|...|..--.+++..|....+.|+++...++
T Consensus 15 ~EQi~~I~~yI~qAk~~~R~DEV~~Le~NLrEL~~ei~~~~ 55 (59)
T 1z0j_B 15 LQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTLAKQK 55 (59)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333444455555557888888888888877766554
No 93
>2phn_A F420-0:gamma-glutamyl ligase; coenzyme F420 biosynthesis, amide BON enzyme, metal dependent, NEW fold, GDP binding, MCSG; HET: GDP; 1.35A {Archaeoglobus fulgidus dsm 4304} SCOP: d.340.1.1 PDB: 2g9i_A
Probab=26.17 E-value=13 Score=29.09 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=21.2
Q ss_pred hhhhhcCcceEEEEecCCCcccccCc
Q 030090 34 ELSVLCDAEVGVIIFSATGKLFESSS 59 (183)
Q Consensus 34 ELs~LCd~~vavivfs~~gk~~~~~s 59 (183)
+|.-.|+++|+|||+.+.|+++..+.
T Consensus 138 ~l~~~~G~~v~ViI~Dt~gr~~r~g~ 163 (254)
T 2phn_A 138 RILELTGKRVGVIITDTNGRCFRRGV 163 (254)
T ss_dssp HHHHHHSCCCEEEEEEEEEETTEEEE
T ss_pred HHHHHHCCCEEEEEEcCCCchhhccC
Confidence 45567899999999999998877554
No 94
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=26.07 E-value=1.2e+02 Score=18.88 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030090 147 NEISTLERKGAKLLEENKNLKQKVRLFD 174 (183)
Q Consensus 147 ~~i~~l~~k~~~l~~~n~~L~~~~~~~~ 174 (183)
+.|..|+..+..+..+...|+.+...+.
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L~~e~~~L~ 74 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQLQREQRHLK 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777777777777777776543
No 95
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=25.60 E-value=48 Score=19.71 Aligned_cols=25 Identities=16% Similarity=0.353 Sum_probs=20.2
Q ss_pred EEEecCCCcccccCc-chhHHHHHHh
Q 030090 45 VIIFSATGKLFESSS-SSMKDIIARY 69 (183)
Q Consensus 45 vivfs~~gk~~~~~s-~~v~~vl~RY 69 (183)
+.|+-|+|+.++|+. .++.+++..+
T Consensus 3 i~i~~p~g~~~~~~~g~T~~dla~~i 28 (73)
T 2kmm_A 3 VMVFTPKGEIKRLPQGATALDFAYSL 28 (73)
T ss_dssp EEEECTTCCEEEECTTCBHHHHHHHH
T ss_pred EEEEcCCCCEEEcCCCCcHHHHHHHH
Confidence 567778999999988 6888888776
No 96
>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase, phosphotransferase, phosphorylation; NMR {Mus musculus} SCOP: d.93.1.1 PDB: 1blk_A
Probab=25.56 E-value=50 Score=21.70 Aligned_cols=42 Identities=17% Similarity=0.157 Sum_probs=27.8
Q ss_pred Hhhhhhc------CcceEEEEecCCCcccccCc---chhHHHHHHhhhccc
Q 030090 33 EELSVLC------DAEVGVIIFSATGKLFESSS---SSMKDIIARYNMHSS 74 (183)
Q Consensus 33 ~ELs~LC------d~~vavivfs~~gk~~~~~s---~~v~~vl~RY~~~~~ 74 (183)
+=||+.+ .+.-..|...++|..+.... +++.++|+-|...+.
T Consensus 50 y~LSv~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~~y~~~~~ 100 (114)
T 1blj_A 50 FSLSVKDITTQGEVVKHYKIRSLDNGGYYISPRITFPTLQALVQHYSKKGD 100 (114)
T ss_dssp EEEEECBCCTTTCBCCCEEEEEETTTEEEEETTEEESSHHHHHHHHHHCCS
T ss_pred EEEEEEEecCCCCcEEEEEEEEcCCCCEEECCCcccCCHHHHHHHhhhCCC
Confidence 4567766 24445555556776554333 799999999998754
No 97
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=25.39 E-value=14 Score=28.75 Aligned_cols=20 Identities=20% Similarity=0.547 Sum_probs=12.2
Q ss_pred CcceEEEEecCCCcccc--cCc
Q 030090 40 DAEVGVIIFSATGKLFE--SSS 59 (183)
Q Consensus 40 d~~vavivfs~~gk~~~--~~s 59 (183)
+-|-++-+|||.|++|. |+.
T Consensus 11 ~yd~~~t~fSp~Grl~QvEYA~ 32 (264)
T 3h4p_A 11 AYDRAITVFSPEGRLYQVEYAR 32 (264)
T ss_dssp -----CCCCCSSSSCHHHHHHH
T ss_pred ccCCCcceECCCCeeHHHHhHH
Confidence 44677889999999874 654
No 98
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=25.04 E-value=4.4e+02 Score=25.14 Aligned_cols=121 Identities=12% Similarity=0.143 Sum_probs=0.0
Q ss_pred EEEecCCCcccccCcchhHHHHHHhhhcccCcccCCCCchHHHhhHHHHHHhHHHHHHHHHHHHhhcC-----CCCCCCC
Q 030090 45 VIIFSATGKLFESSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRG-----EDLHGLT 119 (183)
Q Consensus 45 vivfs~~gk~~~~~s~~v~~vl~RY~~~~~~~~~~~~~~~~~q~~~~~~~~Lk~eie~l~~~lr~~~g-----e~l~~Ls 119 (183)
+++|.+.|++..|.+ +.+||.-|..+ ....-.......+.+++.+++.++...+-+.| -.+..-+
T Consensus 975 m~~~d~~g~i~k~~~--l~eiL~~f~~~--------R~e~~~rRk~~~l~~l~~~l~k~~~r~~fi~~vi~~~L~i~~~~ 1044 (1177)
T 4gfh_A 975 MVAFDPHGKIKKYNS--VNEILSEFYYV--------RLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKP 1044 (1177)
T ss_dssp CEEECTTSCEEECSS--HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSSSC
T ss_pred EEEEcCCCCccCcCC--HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCeEEEecCC
Q ss_pred HHHHHHHHHH--------------------------------------------------------------HHHHHHHH
Q 030090 120 IEELQHLETM--------------------------------------------------------------LEQGLSRV 137 (183)
Q Consensus 120 ~~eL~~Le~~--------------------------------------------------------------Le~~L~~I 137 (183)
.+++.++-.. |++.|.+.
T Consensus 1045 ~devI~~Lr~~~~~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qydyIL~MrL~~L 1124 (1177)
T 4gfh_A 1045 RNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMRIWSL 1124 (1177)
T ss_dssp HHHHHHHHHHTTCCEECSSSCEECCC------------------------------------CTTTCBTHHHHSSBGGGG
T ss_pred HHHHHHHHHHCCCcccchhhhhhcccchhhhhhhhhhhccccccccccccccchhhhhhcccccccchhhHHhcChHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhh
Q 030090 138 LQTKGDRIMNEISTLERKGAKLL---------EENKNLKQKVRLFDL 175 (183)
Q Consensus 138 R~rK~~ll~~~i~~l~~k~~~l~---------~~n~~L~~~~~~~~~ 175 (183)
..-+.+-|.++.+.+......|. ++-..|...+.++..
T Consensus 1125 T~ee~ekL~~E~~e~~~ei~~L~~~s~~~lw~~DLd~~~~~~~~~~~ 1171 (1177)
T 4gfh_A 1125 TKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQ 1171 (1177)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
No 99
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=25.00 E-value=1.8e+02 Score=21.88 Aligned_cols=11 Identities=27% Similarity=0.631 Sum_probs=6.6
Q ss_pred CCCHHHHHHHH
Q 030090 117 GLTIEELQHLE 127 (183)
Q Consensus 117 ~Ls~~eL~~Le 127 (183)
++|++++..+-
T Consensus 63 g~~l~~i~~~~ 73 (278)
T 1r8e_A 63 GTPLEEMKKAQ 73 (278)
T ss_dssp TCCHHHHHHHT
T ss_pred CCCHHHHHHHH
Confidence 36666666654
No 100
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A*
Probab=24.48 E-value=55 Score=29.64 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=32.8
Q ss_pred HHHHHhHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHH
Q 030090 91 SKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGL 134 (183)
Q Consensus 91 ~~~~~Lk~eie~l~~~lr~~~ge~l~~Ls~~eL~~Le~~Le~~L 134 (183)
.++++|.++.+..+.++..+......+|..+||..|+..++..+
T Consensus 707 E~~~kL~~q~~~k~~El~~L~~~t~~dlW~~DLd~f~~~~~~~~ 750 (757)
T 3l4j_A 707 ERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFL 750 (757)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 35777777777777777777777777788888888877776644
No 101
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=24.41 E-value=12 Score=29.75 Aligned_cols=20 Identities=20% Similarity=0.411 Sum_probs=15.1
Q ss_pred hhcCcceEEEEecCCCcccc
Q 030090 37 VLCDAEVGVIIFSATGKLFE 56 (183)
Q Consensus 37 ~LCd~~vavivfs~~gk~~~ 56 (183)
+-.+-|-++-+|||.|++|.
T Consensus 4 ~~~~yd~~~t~fSP~Grl~Q 23 (288)
T 3nzj_F 4 IGTGYDLSNSVFSPDGRNFQ 23 (288)
T ss_dssp -CCCTTSSTTCCCTTSCCHH
T ss_pred CcCCccCCcccCCCCCchHH
Confidence 44566777889999999874
No 102
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=24.33 E-value=89 Score=16.61 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030090 146 MNEISTLERKGAKLLEENKNLK 167 (183)
Q Consensus 146 ~~~i~~l~~k~~~l~~~n~~L~ 167 (183)
..+|+.-+.....|.++|..|+
T Consensus 13 hk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 13 HKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHH
Confidence 3344444444455566666554
No 103
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=24.20 E-value=1.1e+02 Score=17.65 Aligned_cols=19 Identities=32% Similarity=0.344 Sum_probs=13.7
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 030090 115 LHGLTIEELQHLETMLEQG 133 (183)
Q Consensus 115 l~~Ls~~eL~~Le~~Le~~ 133 (183)
|..+|++||++.-..|+..
T Consensus 7 Lk~ls~eEL~~rl~~Ld~~ 25 (51)
T 2jo8_A 7 LKSWTVEDLQKRLLALDPM 25 (51)
T ss_dssp GGGSCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHccHH
Confidence 5568999998866665554
No 104
>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell adapter containing SH2 domain protein; NMR {Mus musculus}
Probab=24.17 E-value=70 Score=22.08 Aligned_cols=43 Identities=16% Similarity=0.145 Sum_probs=28.9
Q ss_pred HhhhhhcCcceEEEE--ecCCCcccccC-----c---chhHHHHHHhhhcccC
Q 030090 33 EELSVLCDAEVGVII--FSATGKLFESS-----S---SSMKDIIARYNMHSSN 75 (183)
Q Consensus 33 ~ELs~LCd~~vaviv--fs~~gk~~~~~-----s---~~v~~vl~RY~~~~~~ 75 (183)
+=|||.++-.|--+. ..++|+.|.+. . +++.++|+-|...+..
T Consensus 62 y~LSv~~~~~v~H~~I~~~~~g~~~~l~~~~~~~~~F~sl~eLV~~y~~~~~~ 114 (141)
T 2eo6_A 62 YTLVAFFNKRVYNIPVRFIEATKQYALGKKKNGEEYFGSVVEIVNSHQHNPLV 114 (141)
T ss_dssp EEEEEEETTEEEEEEECEETTTTEECSSSCCTTCCCBSSHHHHHHHHHHSCCC
T ss_pred EEEEEEECCEEEEEEEEEeCCCCEEEEccccCCCCccCCHHHHHHHHhhCCcc
Confidence 346777765554443 34678766654 2 6999999999987654
No 105
>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6 (PTK6/BRK), SRC homology 2(S domain, solution structure, backbone dynamics, transferase; NMR {Homo sapiens} SCOP: d.93.1.1
Probab=23.12 E-value=67 Score=20.54 Aligned_cols=42 Identities=21% Similarity=0.102 Sum_probs=27.4
Q ss_pred HhhhhhcC--cceEEEEecCCCcccccCc---chhHHHHHHhhhccc
Q 030090 33 EELSVLCD--AEVGVIIFSATGKLFESSS---SSMKDIIARYNMHSS 74 (183)
Q Consensus 33 ~ELs~LCd--~~vavivfs~~gk~~~~~s---~~v~~vl~RY~~~~~ 74 (183)
+=||+.++ +.-..|...++|+.+.... +++.++|+-|...+.
T Consensus 40 ~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~~y~~~~~ 86 (100)
T 1rja_A 40 YVLSVRDTQAVRHYKIWRRAGGRLHLNEAVSFLSLPELVNYHRAQSL 86 (100)
T ss_dssp EEEEECTTSSCEEEEEEECSSSCEEEETTEEESSHHHHHHHHHHCCT
T ss_pred EEEEEEECCEEEEEEEEEcCCCcEEECCCCccCCHHHHHHHHhhCCC
Confidence 34666664 3344444556777554433 799999999998664
No 106
>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2; SH2, phosphoinositide phospholipase C, PLC-gamma-2, phospholipase C-gamma-2; NMR {Rattus norvegicus}
Probab=22.77 E-value=59 Score=21.93 Aligned_cols=43 Identities=14% Similarity=0.285 Sum_probs=26.1
Q ss_pred HHhhhhhcCcceEEEEecCCCcccccCc----chhHHHHHHhhhccc
Q 030090 32 AEELSVLCDAEVGVIIFSATGKLFESSS----SSMKDIIARYNMHSS 74 (183)
Q Consensus 32 A~ELs~LCd~~vavivfs~~gk~~~~~s----~~v~~vl~RY~~~~~ 74 (183)
.+=||+.++-.|--+....+|..|.... +++.++|+.|...+.
T Consensus 54 ~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~F~sl~~LV~~y~~~~~ 100 (124)
T 2eob_A 54 SYAITFRARGKVKHCRINRDGRHFVLGTSAYFESLVELVSYYEKHAL 100 (124)
T ss_dssp CEEEEEEETTEEEEEEEEESSSCEESSSSCCBSSHHHHHHHHTTSCS
T ss_pred CEEEEEEeCCeEEEEEEEECCCEEEECCCCcCCCHHHHHHHHhhCCC
Confidence 3456777765554333333455454332 699999999997653
No 107
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=22.41 E-value=1.9e+02 Score=19.57 Aligned_cols=8 Identities=63% Similarity=0.920 Sum_probs=3.3
Q ss_pred CCCHHHHH
Q 030090 117 GLTIEELQ 124 (183)
Q Consensus 117 ~Ls~~eL~ 124 (183)
++++++|+
T Consensus 21 ~~~ieeLq 28 (113)
T 4fi5_A 21 SMTMEELQ 28 (113)
T ss_dssp CCCHHHHH
T ss_pred cccHHHHH
Confidence 34444433
No 108
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=22.20 E-value=1.6e+02 Score=18.61 Aligned_cols=11 Identities=27% Similarity=0.546 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 030090 149 ISTLERKGAKL 159 (183)
Q Consensus 149 i~~l~~k~~~l 159 (183)
++.|++-...|
T Consensus 27 l~sLrrT~~EL 37 (78)
T 3iv1_A 27 LNALKRTEEDL 37 (78)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 109
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*
Probab=21.96 E-value=60 Score=23.09 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=28.0
Q ss_pred Hhhhhhc-----C--cceEEEEecCCCcccccCc---chhHHHHHHhhhccc
Q 030090 33 EELSVLC-----D--AEVGVIIFSATGKLFESSS---SSMKDIIARYNMHSS 74 (183)
Q Consensus 33 ~ELs~LC-----d--~~vavivfs~~gk~~~~~s---~~v~~vl~RY~~~~~ 74 (183)
+=||+.+ + +.-..|...++|..|.... +++.++|+-|...+.
T Consensus 112 y~LSv~~~~~~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~~LV~~y~~~~~ 163 (175)
T 4d8k_A 112 FSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRHYTNASD 163 (175)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEECSSSCEESSTTSEESSHHHHHHHHHHCCT
T ss_pred EEEEEEeCcccCCCceEEEEEEECCCCCEEECCCCccCCHHHHHHHHhhCCC
Confidence 3466665 2 4445555667777665443 799999999998654
No 110
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=21.88 E-value=1.6e+02 Score=18.74 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 145 IMNEISTLERKGAKLLEENKNLKQKVR 171 (183)
Q Consensus 145 l~~~i~~l~~k~~~l~~~n~~L~~~~~ 171 (183)
|.++|+.++.....+.++|..|+.-..
T Consensus 51 Lh~~ie~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 51 LHKEIEQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555565566666666666655443
No 111
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=21.75 E-value=15 Score=28.01 Aligned_cols=13 Identities=54% Similarity=0.999 Sum_probs=9.8
Q ss_pred EEEEecCCCcccc
Q 030090 44 GVIIFSATGKLFE 56 (183)
Q Consensus 44 avivfs~~gk~~~ 56 (183)
++-+|||.|++|.
T Consensus 3 ~~t~fsp~Grl~Q 15 (242)
T 1ryp_E 3 GVSTFSPEGRLFQ 15 (242)
T ss_dssp CTTCBCTTSCBHH
T ss_pred CCceECCCCcChH
Confidence 4558999999873
No 112
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=21.63 E-value=1.1e+02 Score=19.81 Aligned_cols=47 Identities=15% Similarity=0.185 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 117 GLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKV 170 (183)
Q Consensus 117 ~Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~ 170 (183)
++|++++..+-..-.. ....++.++++.+..+...|+..-..|...+
T Consensus 58 G~sl~~I~~~l~~~~~-------~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 104 (108)
T 2vz4_A 58 GFPLDEVAALLDDPAA-------DPRAHLRRQHELLSARIGKLQKMAAAVEQAM 104 (108)
T ss_dssp TCCHHHHHHHHTC------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777665432110 1123444455555555555544444444443
No 113
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=21.57 E-value=17 Score=27.64 Aligned_cols=15 Identities=33% Similarity=0.742 Sum_probs=11.6
Q ss_pred ceEEEEecCCCcccc
Q 030090 42 EVGVIIFSATGKLFE 56 (183)
Q Consensus 42 ~vavivfs~~gk~~~ 56 (183)
|-++-+|||.|++|.
T Consensus 3 d~~~t~fsp~Grl~Q 17 (241)
T 1ryp_D 3 DRALSIFSPDGHIFQ 17 (241)
T ss_dssp CCCCSCCBTTTBCHH
T ss_pred CCCceeECCCCcchH
Confidence 445678999999873
No 114
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=21.53 E-value=1.4e+02 Score=18.46 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030090 147 NEISTLERKGAKLLEENKNLKQ 168 (183)
Q Consensus 147 ~~i~~l~~k~~~l~~~n~~L~~ 168 (183)
+.|..|+.....|.+++..|+.
T Consensus 57 ~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 57 EYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666666666655554
No 115
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=21.51 E-value=53 Score=20.75 Aligned_cols=31 Identities=6% Similarity=0.162 Sum_probs=23.2
Q ss_pred hhhcCcceEEEEecCCCcccccCcchhHHHHH
Q 030090 36 SVLCDAEVGVIIFSATGKLFESSSSSMKDIIA 67 (183)
Q Consensus 36 s~LCd~~vavivfs~~gk~~~~~s~~v~~vl~ 67 (183)
+++..+..+++++.++|+.. |+++.+..++.
T Consensus 16 ~il~~~~~~i~~~D~~g~i~-~~N~a~~~l~g 46 (118)
T 3fg8_A 16 NLYFQGGLGFMALDEDLRII-YVNSGCLRHVR 46 (118)
T ss_dssp CSSSCTTCEEEEECTTCBEE-EECHHHHHHHT
T ss_pred HHHhhCCceEEEECCCCeEE-EECHHHHHHhC
Confidence 46778899999999988754 56666666553
No 116
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=21.48 E-value=1.6e+02 Score=23.39 Aligned_cols=34 Identities=18% Similarity=0.172 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhcc
Q 030090 146 MNEISTLERKGAKLLEENKNLKQK---VRLFDLWNHH 179 (183)
Q Consensus 146 ~~~i~~l~~k~~~l~~~n~~L~~~---~~~~~~~~~~ 179 (183)
.+++..+..+...|.++...|... ++.+..|.+.
T Consensus 105 ~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p~~~~ 141 (357)
T 3rrk_A 105 ASRAEVLGKERAALEEEIQTIELFGKAAEKLAALAHG 141 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcc
Confidence 445566777777777888888888 8888888743
No 117
>1jyr_A Growth factor receptor-bound protein 2; receptor binding, regulatory, inhibitor, signaling protein-I complex; HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*
Probab=21.44 E-value=56 Score=20.86 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=26.0
Q ss_pred HhhhhhcCcceEE--EEecCCCcccccCc--chhHHHHHHhhhcc
Q 030090 33 EELSVLCDAEVGV--IIFSATGKLFESSS--SSMKDIIARYNMHS 73 (183)
Q Consensus 33 ~ELs~LCd~~vav--ivfs~~gk~~~~~s--~~v~~vl~RY~~~~ 73 (183)
+=||+.++-.|-= |...++|.-+.... +++.++|+-|...+
T Consensus 40 ~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~F~sl~~LV~~y~~~~ 84 (96)
T 1jyr_A 40 FSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTS 84 (96)
T ss_dssp EEEEEEETTEEEEEECEECTTSCEESSSCEESSHHHHHHHTTSSC
T ss_pred EEEEEEeCCeEEEEEEEEcCCCCEEECCcccCCHHHHHHHHhhCC
Confidence 4566766544433 33445676443333 79999999998765
No 118
>2k1v_A Insulin-like peptide INSL5; peptide hormone, relaxin-3, chimera, cleavage on PAIR of basic residues, secreted, signaling protein; HET: PCA; NMR {Synthetic} PDB: 2kbc_A*
Probab=21.21 E-value=29 Score=17.10 Aligned_cols=9 Identities=44% Similarity=0.896 Sum_probs=6.7
Q ss_pred HHhhhhhcC
Q 030090 32 AEELSVLCD 40 (183)
Q Consensus 32 A~ELs~LCd 40 (183)
.+|||.||.
T Consensus 14 msDLs~lC~ 22 (26)
T 2k1v_A 14 MTDLSALCX 22 (26)
T ss_dssp HHHHTTTC-
T ss_pred HHHHHHHHh
Confidence 378999994
No 119
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=21.18 E-value=1.4e+02 Score=19.33 Aligned_cols=11 Identities=18% Similarity=0.673 Sum_probs=6.5
Q ss_pred CCCHHHHHHHH
Q 030090 117 GLTIEELQHLE 127 (183)
Q Consensus 117 ~Ls~~eL~~Le 127 (183)
++|++++..+-
T Consensus 59 G~~l~~I~~~l 69 (109)
T 1r8d_A 59 GFRLDEIKEML 69 (109)
T ss_dssp TCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 36666666554
No 120
>4fbn_A 1-phosphatidylinositol 4,5-bisphosphate phosphodi gamma-1; SH2 domain, plcgamma specific array, interaction domain, FIB growth factor receptor 1; 2.40A {Homo sapiens} PDB: 4ey0_A* 3gqi_B* 2fci_A* 2pld_A* 2ple_A*
Probab=21.16 E-value=40 Score=25.82 Aligned_cols=42 Identities=17% Similarity=0.255 Sum_probs=30.5
Q ss_pred HhhhhhcCcceEEEEecCCCcccccCc---chhHHHHHHhhhccc
Q 030090 33 EELSVLCDAEVGVIIFSATGKLFESSS---SSMKDIIARYNMHSS 74 (183)
Q Consensus 33 ~ELs~LCd~~vavivfs~~gk~~~~~s---~~v~~vl~RY~~~~~ 74 (183)
+=||++++-.|--+.+...|+.|.... +++.++|+-|...+-
T Consensus 158 y~Lsv~~~~~v~H~~I~~~~~~~~~~~~~F~sL~~Lv~~y~~~p~ 202 (246)
T 4fbn_A 158 YAISFRAEGKIKHCRVQQEGQTVMLGNSEFDSLVDLISYYEKHPL 202 (246)
T ss_dssp EEEEEEETTEEEEEEEEEETTEEEETTEEESCHHHHHHHHHHSCS
T ss_pred EEEEEEeCCCeEEEEEEeCCCEEEeCCCccCCHHHHHHHhCcCCC
Confidence 457777777776666666676665544 799999999987654
No 121
>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain, protein protein interactions, PTR residues, HYDR peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A
Probab=20.99 E-value=70 Score=20.79 Aligned_cols=41 Identities=22% Similarity=0.395 Sum_probs=24.9
Q ss_pred hhhhhcCcceEEEEecCCCccccc-Cc---chhHHHHHHhhhccc
Q 030090 34 ELSVLCDAEVGVIIFSATGKLFES-SS---SSMKDIIARYNMHSS 74 (183)
Q Consensus 34 ELs~LCd~~vavivfs~~gk~~~~-~s---~~v~~vl~RY~~~~~ 74 (183)
=||+.++-.|--+....+|..|.+ +. +++.++|+-|...+.
T Consensus 45 ~LSv~~~~~v~H~~I~~~~~~~~~~~~~~F~sl~~LV~~y~~~~~ 89 (109)
T 3tkz_A 45 TLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQYYMEHHG 89 (109)
T ss_dssp EEEEEETTEEEEEEEEECSSCEESSSSCCBSSHHHHHHHHHHSTT
T ss_pred EEEEEECCEEEEEEEEeCCCEEEecCCcccCCHHHHHHHHHhCcC
Confidence 466666555543333334555543 22 699999999998663
No 122
>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide binding protein; HET: PTR; 1.80A {Mus musculus} SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A*
Probab=20.91 E-value=68 Score=20.60 Aligned_cols=42 Identities=19% Similarity=0.275 Sum_probs=26.7
Q ss_pred HhhhhhcCcce--EEEEecCCCcccccCc--chhHHHHHHhhhccc
Q 030090 33 EELSVLCDAEV--GVIIFSATGKLFESSS--SSMKDIIARYNMHSS 74 (183)
Q Consensus 33 ~ELs~LCd~~v--avivfs~~gk~~~~~s--~~v~~vl~RY~~~~~ 74 (183)
.=||+.++-.| ..|...++|.-+.... +++.++|+-|...+-
T Consensus 45 ~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~F~sl~~LV~~y~~~~l 90 (100)
T 1r1p_A 45 FSISVRHEDDVQHFKVMRDTKGNYFLWTEKFPSLNKLVDYYRTTSI 90 (100)
T ss_dssp EEEEEECSSSEEEEECEECTTCCEESSSCEESSHHHHHHHHTTSCS
T ss_pred EEEEEEECCEEEEEEEEEcCCCCEEEeCCEeCCHHHHHHHHHhCCC
Confidence 45667665444 3344456676443333 799999999987653
No 123
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=20.64 E-value=16 Score=28.19 Aligned_cols=18 Identities=22% Similarity=0.543 Sum_probs=13.4
Q ss_pred cCcceEEEEecCCCcccc
Q 030090 39 CDAEVGVIIFSATGKLFE 56 (183)
Q Consensus 39 Cd~~vavivfs~~gk~~~ 56 (183)
.+=|-++-+|||.|++|.
T Consensus 5 ~~yd~~~t~fsp~Grl~Q 22 (254)
T 1iru_G 5 TGYDLSASTFSPDGRVFQ 22 (254)
T ss_dssp SSTTSCTTCCCTTSCCHH
T ss_pred cccCCCCccCCcCCccHH
Confidence 345666779999999873
No 124
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A*
Probab=20.40 E-value=90 Score=28.47 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=29.3
Q ss_pred HHHHhHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHH
Q 030090 92 KYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGL 134 (183)
Q Consensus 92 ~~~~Lk~eie~l~~~lr~~~ge~l~~Ls~~eL~~Le~~Le~~L 134 (183)
++++|.++.+..+.++..+......+|..+||..|+..++..-
T Consensus 735 ~~~kL~~q~~~k~~El~~L~~~t~~dlW~~DLd~f~~~~~~~e 777 (803)
T 3qx3_A 735 KVEELIKQRDAKGREVNDLKRKSPSDLWKEDLAAFVEELDKVE 777 (803)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777666666666677777777776666543
No 125
>3sl9_C B-cell CLL/lymphoma 9 protein; armadillo repeat, components of the WNT signaling pathway, B catenin, signaling protein, protein binding; 2.20A {Homo sapiens} PDB: 2gl7_C
Probab=20.31 E-value=1.3e+02 Score=17.05 Aligned_cols=22 Identities=41% Similarity=0.622 Sum_probs=14.8
Q ss_pred cCCCCCCCCHHHHHHHHHHHHH
Q 030090 111 RGEDLHGLTIEELQHLETMLEQ 132 (183)
Q Consensus 111 ~ge~l~~Ls~~eL~~Le~~Le~ 132 (183)
.|++-++||-++|..-+..|..
T Consensus 3 ~~~n~~gls~eqlehrerslqt 24 (55)
T 3sl9_C 3 LGENPDGLSQEQLEHRERSLQT 24 (55)
T ss_dssp ----CCCCCHHHHHHHHHHHHH
T ss_pred cccCCcccCHHHHHHHHHHHHH
Confidence 4678889999999887777665
No 126
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=20.31 E-value=19 Score=27.59 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=12.6
Q ss_pred cceEEEEecCCCcccc
Q 030090 41 AEVGVIIFSATGKLFE 56 (183)
Q Consensus 41 ~~vavivfs~~gk~~~ 56 (183)
-|-++-+|||.|++|.
T Consensus 5 yd~~~t~fsp~Grl~Q 20 (250)
T 1ryp_B 5 YSFSLTTFSPSGKLGQ 20 (250)
T ss_dssp CCSBSSCBCTTSCBHH
T ss_pred ccCCceeECCCCccHH
Confidence 3566779999999873
No 127
>3rmq_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, zinc binding, unknown function; 1.85A {Saccharomonospora viridis} PDB: 3rms_A
Probab=20.14 E-value=22 Score=24.24 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=11.3
Q ss_pred HhhhhhcCcceEEEE
Q 030090 33 EELSVLCDAEVGVII 47 (183)
Q Consensus 33 ~ELs~LCd~~vaviv 47 (183)
..+.+|||++|..-.
T Consensus 30 ~~ftaLCG~~VTp~~ 44 (116)
T 3rmq_A 30 RPFTALCGETVTPQT 44 (116)
T ss_dssp CCEECTTSCEECCCG
T ss_pred CccccccCCeecCCC
Confidence 467899999986543
No 128
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=20.08 E-value=52 Score=17.57 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030090 149 ISTLERKGAKLLEENKNLKQKVR 171 (183)
Q Consensus 149 i~~l~~k~~~l~~~n~~L~~~~~ 171 (183)
++.+++|.+.|+.++..+...+.
T Consensus 6 i~avKkKiq~lq~q~d~aee~~~ 28 (37)
T 3azd_A 6 LEAVRRKIRSLQEQNYHLENEVA 28 (37)
T ss_dssp CHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555444
No 129
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=20.06 E-value=2e+02 Score=19.00 Aligned_cols=90 Identities=20% Similarity=0.273 Sum_probs=46.3
Q ss_pred CCcccccCcchhHHHHHHhhhcccCcccCCCCchHHHhhHHHHHHhHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH
Q 030090 51 TGKLFESSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETML 130 (183)
Q Consensus 51 ~gk~~~~~s~~v~~vl~RY~~~~~~~~~~~~~~~~~q~~~~~~~~Lk~eie~l~~~lr~~~ge~l~~Ls~~eL~~Le~~L 130 (183)
++.--+|-+-...++.++|...+ ...+.. +-+-.++-.|...++.++.+.+.+.. +....
T Consensus 4 g~d~eeFl~KdFSe~YE~~h~Er--L~~mSK-----qELIqEYl~LE~~~s~le~e~~rlr~-------------~~~~~ 63 (104)
T 3s9g_A 4 GGDGSEFLQRDFSETYERYHTES--LQNMSK-----QELIKEYLELEKSLSRMEDENNRLRL-------------ESKRL 63 (104)
T ss_dssp ----------CCHHHHHHHHHHH--HHTSCH-----HHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHH--HHhccH-----HHHHHHHHHHHHHHHHHHHHHHHHHH-------------Hhccc
Confidence 33344566777778888886422 111111 11234566666666666655533211 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090 131 EQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQ 168 (183)
Q Consensus 131 e~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~ 168 (183)
..+.+-+..+++.|......|..+|..-.+
T Consensus 64 --------~~~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 64 --------DARVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------hhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344556778889999999999999977654
Done!