Query 030091
Match_columns 183
No_of_seqs 207 out of 2209
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 08:22:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030091.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030091hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02160 thiosulfate sulfurtra 99.9 7.7E-25 1.7E-29 158.6 12.5 112 72-183 14-128 (136)
2 KOG1530 Rhodanese-related sulf 99.9 1.4E-24 3.1E-29 151.7 10.9 114 69-182 19-135 (136)
3 cd01527 RHOD_YgaP Member of th 99.9 5E-24 1.1E-28 146.0 10.6 97 73-181 2-99 (99)
4 cd01533 4RHOD_Repeat_2 Member 99.9 1.3E-23 2.7E-28 146.6 11.9 97 70-178 7-109 (109)
5 PRK00162 glpE thiosulfate sulf 99.9 2.2E-23 4.8E-28 145.1 11.8 99 72-182 4-104 (108)
6 cd01518 RHOD_YceA Member of th 99.9 9.9E-24 2.1E-28 145.1 8.0 97 74-176 3-101 (101)
7 cd01521 RHOD_PspE2 Member of t 99.9 3E-22 6.5E-27 139.9 11.2 97 73-181 8-110 (110)
8 cd01524 RHOD_Pyr_redox Member 99.9 3E-22 6.4E-27 135.0 10.4 88 75-175 1-89 (90)
9 cd01523 RHOD_Lact_B Member of 99.9 2.2E-22 4.8E-27 138.1 9.9 96 75-175 1-99 (100)
10 cd01520 RHOD_YbbB Member of th 99.9 2.6E-22 5.7E-27 143.9 10.5 101 75-176 1-126 (128)
11 cd01519 RHOD_HSP67B2 Member of 99.9 2.1E-22 4.6E-27 139.3 9.3 100 76-176 2-106 (106)
12 cd01526 RHOD_ThiF Member of th 99.9 6.6E-22 1.4E-26 140.6 10.8 106 70-180 5-117 (122)
13 cd01528 RHOD_2 Member of the R 99.9 7.2E-22 1.6E-26 135.8 10.6 91 75-177 2-99 (101)
14 cd01534 4RHOD_Repeat_3 Member 99.9 6E-22 1.3E-26 134.8 9.8 89 75-175 1-94 (95)
15 cd01444 GlpE_ST GlpE sulfurtra 99.9 1.2E-21 2.5E-26 133.2 10.4 89 75-175 2-95 (96)
16 PRK11493 sseA 3-mercaptopyruva 99.9 8.9E-22 1.9E-26 158.6 11.2 138 46-183 116-279 (281)
17 TIGR03865 PQQ_CXXCW PQQ-depend 99.9 2E-21 4.4E-26 144.5 12.3 109 71-181 34-162 (162)
18 cd01447 Polysulfide_ST Polysul 99.9 1.2E-21 2.6E-26 134.7 9.6 100 75-178 1-103 (103)
19 cd01448 TST_Repeat_1 Thiosulfa 99.9 2.9E-21 6.2E-26 137.1 11.1 104 75-178 2-122 (122)
20 cd01535 4RHOD_Repeat_4 Member 99.9 2.6E-21 5.6E-26 141.5 10.6 91 80-182 2-95 (145)
21 cd01525 RHOD_Kc Member of the 99.9 1.9E-21 4E-26 134.4 9.0 98 75-175 1-104 (105)
22 cd01449 TST_Repeat_2 Thiosulfa 99.9 2.1E-21 4.6E-26 136.8 9.4 102 75-176 1-118 (118)
23 PLN02723 3-mercaptopyruvate su 99.9 3.1E-21 6.6E-26 158.1 11.7 109 75-183 192-317 (320)
24 cd01530 Cdc25 Cdc25 phosphatas 99.9 2.9E-21 6.2E-26 137.2 10.0 91 74-175 3-120 (121)
25 cd01522 RHOD_1 Member of the R 99.9 2.8E-21 6.1E-26 136.5 9.2 101 75-177 1-105 (117)
26 cd01529 4RHOD_Repeats Member o 99.8 4.7E-21 1E-25 130.5 8.8 84 86-175 11-95 (96)
27 COG2897 SseA Rhodanese-related 99.8 9.8E-21 2.1E-25 151.3 12.0 140 44-183 117-282 (285)
28 smart00450 RHOD Rhodanese Homo 99.8 1E-20 2.2E-25 128.2 10.3 95 86-180 3-100 (100)
29 PRK07878 molybdopterin biosynt 99.8 2.3E-20 5E-25 156.6 13.3 133 33-180 251-387 (392)
30 PF00581 Rhodanese: Rhodanese- 99.8 1.9E-20 4.1E-25 130.2 10.4 102 76-177 1-113 (113)
31 PRK08762 molybdopterin biosynt 99.8 1.9E-20 4.1E-25 156.5 11.9 98 73-182 3-103 (376)
32 PRK09629 bifunctional thiosulf 99.8 4.9E-20 1.1E-24 161.7 12.4 138 45-182 109-270 (610)
33 cd01532 4RHOD_Repeat_1 Member 99.8 2.9E-20 6.3E-25 125.8 8.6 80 86-176 9-92 (92)
34 cd01445 TST_Repeats Thiosulfat 99.8 9.6E-20 2.1E-24 132.2 10.8 101 75-175 1-137 (138)
35 PRK11493 sseA 3-mercaptopyruva 99.8 9.2E-20 2E-24 146.9 11.6 111 73-183 5-135 (281)
36 PRK01415 hypothetical protein; 99.8 1E-19 2.2E-24 143.0 10.2 100 72-177 111-212 (247)
37 PRK07411 hypothetical protein; 99.8 2.6E-19 5.6E-24 150.1 13.0 139 33-181 243-386 (390)
38 PRK09629 bifunctional thiosulf 99.8 1.7E-19 3.7E-24 158.3 12.3 110 73-182 9-128 (610)
39 PRK05320 rhodanese superfamily 99.8 1.6E-19 3.4E-24 143.4 10.5 101 71-177 108-216 (257)
40 PLN02723 3-mercaptopyruvate su 99.8 3.3E-19 7.1E-24 146.1 11.9 111 73-183 22-151 (320)
41 COG0607 PspE Rhodanese-related 99.8 2.5E-19 5.5E-24 124.3 9.6 86 86-183 19-108 (110)
42 cd00158 RHOD Rhodanese Homolog 99.8 1.6E-19 3.5E-24 120.3 8.2 80 85-175 8-89 (89)
43 TIGR02981 phageshock_pspE phag 99.8 4.4E-19 9.5E-24 122.0 9.4 78 86-176 17-97 (101)
44 PRK10287 thiosulfate:cyanide s 99.8 5.3E-19 1.2E-23 122.2 9.2 77 87-176 20-99 (104)
45 cd01531 Acr2p Eukaryotic arsen 99.8 4.4E-19 9.6E-24 124.4 8.2 96 73-177 2-112 (113)
46 PRK00142 putative rhodanese-re 99.8 1.2E-18 2.7E-23 142.0 10.3 101 71-177 110-212 (314)
47 cd01443 Cdc25_Acr2p Cdc25 enzy 99.8 2.1E-18 4.6E-23 120.9 7.9 93 74-175 3-112 (113)
48 PRK11784 tRNA 2-selenouridine 99.7 8.7E-18 1.9E-22 138.4 9.4 102 77-179 5-131 (345)
49 TIGR03167 tRNA_sel_U_synt tRNA 99.7 1.3E-17 2.7E-22 135.7 8.8 93 87-180 2-118 (311)
50 PRK05597 molybdopterin biosynt 99.7 2.1E-17 4.7E-22 137.1 10.1 94 71-176 259-354 (355)
51 COG2897 SseA Rhodanese-related 99.7 4E-17 8.6E-22 130.6 11.2 112 72-183 10-138 (285)
52 cd01446 DSP_MapKP N-terminal r 99.7 2.1E-16 4.6E-21 113.6 9.7 101 75-177 2-127 (132)
53 PRK05600 thiamine biosynthesis 99.7 2.3E-16 5E-21 131.4 9.4 92 74-172 272-369 (370)
54 KOG2017 Molybdopterin synthase 99.5 1.2E-14 2.7E-19 117.1 7.2 169 3-181 241-423 (427)
55 COG1054 Predicted sulfurtransf 99.5 1.9E-14 4.2E-19 114.1 5.0 100 72-177 112-213 (308)
56 PRK01269 tRNA s(4)U8 sulfurtra 99.5 9.7E-14 2.1E-18 119.5 9.3 78 79-168 399-481 (482)
57 KOG3772 M-phase inducer phosph 99.3 2.4E-12 5.2E-17 103.6 7.4 98 69-177 152-276 (325)
58 KOG1529 Mercaptopyruvate sulfu 99.3 8.6E-12 1.9E-16 98.6 9.2 132 44-176 115-275 (286)
59 KOG1529 Mercaptopyruvate sulfu 99.3 2.2E-11 4.8E-16 96.3 10.1 110 74-183 6-136 (286)
60 COG5105 MIH1 Mitotic inducer, 98.6 8.3E-08 1.8E-12 77.2 6.8 96 71-177 240-358 (427)
61 COG2603 Predicted ATPase [Gene 97.4 0.00026 5.7E-09 56.7 5.3 98 77-175 5-127 (334)
62 PF04273 DUF442: Putative phos 96.8 0.0073 1.6E-07 42.0 6.9 75 74-154 14-104 (110)
63 TIGR01244 conserved hypothetic 96.7 0.0098 2.1E-07 42.8 7.3 84 73-161 13-112 (135)
64 KOG1093 Predicted protein kina 95.7 0.0051 1.1E-07 53.7 1.7 93 71-174 620-718 (725)
65 PRK00142 putative rhodanese-re 95.7 0.0012 2.6E-08 54.2 -2.3 40 74-113 15-54 (314)
66 KOG3636 Uncharacterized conser 94.6 0.1 2.2E-06 44.7 6.0 83 88-175 327-427 (669)
67 COG3453 Uncharacterized protei 94.0 0.35 7.7E-06 34.0 6.7 81 71-157 12-108 (130)
68 TIGR03167 tRNA_sel_U_synt tRNA 93.4 0.31 6.7E-06 40.1 6.6 92 46-146 102-206 (311)
69 KOG1717 Dual specificity phosp 92.4 0.19 4.2E-06 40.2 3.9 35 74-112 5-40 (343)
70 cd00127 DSPc Dual specificity 90.7 0.9 1.9E-05 32.0 5.7 79 80-161 20-109 (139)
71 PLN02727 NAD kinase 89.0 2.5 5.4E-05 39.7 8.3 81 72-157 266-364 (986)
72 smart00195 DSPc Dual specifici 88.5 2.1 4.6E-05 30.2 6.3 79 80-162 19-107 (138)
73 PF13350 Y_phosphatase3: Tyros 87.6 5.3 0.00011 29.3 8.1 92 72-163 27-153 (164)
74 PRK07688 thiamine/molybdopteri 82.5 1.1 2.3E-05 37.4 2.5 36 71-107 275-317 (339)
75 PLN02460 indole-3-glycerol-pho 74.1 18 0.0004 30.1 7.3 89 75-164 214-314 (338)
76 PF00782 DSPc: Dual specificit 70.3 13 0.00028 25.8 5.0 79 84-162 15-102 (133)
77 PRK13802 bifunctional indole-3 66.5 21 0.00046 32.7 6.6 88 75-164 144-237 (695)
78 COG2453 CDC14 Predicted protei 66.4 10 0.00022 28.4 4.0 30 133-162 101-134 (180)
79 COG1891 Uncharacterized protei 65.9 8.4 0.00018 29.2 3.3 35 73-112 6-40 (235)
80 PF00218 IGPS: Indole-3-glycer 65.3 3.1 6.7E-05 33.2 1.0 90 74-164 141-235 (254)
81 PF09992 DUF2233: Predicted pe 63.2 9.2 0.0002 28.1 3.2 38 135-172 98-141 (170)
82 PRK11784 tRNA 2-selenouridine 63.0 24 0.00052 29.5 5.9 61 46-106 116-187 (345)
83 PF03853 YjeF_N: YjeF-related 62.9 25 0.00054 26.0 5.5 31 135-166 23-57 (169)
84 PTZ00393 protein tyrosine phos 62.3 64 0.0014 25.6 7.8 80 78-162 107-198 (241)
85 PTZ00242 protein tyrosine phos 59.5 51 0.0011 24.3 6.6 78 78-160 31-124 (166)
86 COG0134 TrpC Indole-3-glycerol 58.1 42 0.0009 26.9 6.2 88 75-163 140-232 (254)
87 PRK12361 hypothetical protein; 57.4 26 0.00055 31.1 5.4 77 77-157 110-198 (547)
88 PRK13957 indole-3-glycerol-pho 56.1 48 0.001 26.4 6.2 87 75-164 135-227 (247)
89 PRK08762 molybdopterin biosynt 55.4 24 0.00052 29.7 4.7 38 136-173 134-171 (376)
90 PF05706 CDKN3: Cyclin-depende 54.6 38 0.00082 25.4 5.1 83 78-160 62-159 (168)
91 COG2518 Pcm Protein-L-isoaspar 52.7 18 0.00039 28.1 3.2 56 122-177 56-136 (209)
92 COG0062 Uncharacterized conser 52.7 43 0.00094 25.8 5.3 36 131-167 41-82 (203)
93 COG0513 SrmB Superfamily II DN 49.1 35 0.00076 30.1 4.9 43 129-172 266-308 (513)
94 PRK00103 rRNA large subunit me 47.2 40 0.00087 24.8 4.3 49 126-174 56-110 (157)
95 PRK11776 ATP-dependent RNA hel 47.2 38 0.00082 29.1 4.8 43 129-172 235-277 (460)
96 TIGR00197 yjeF_nterm yjeF N-te 46.9 61 0.0013 24.8 5.5 35 132-167 40-78 (205)
97 PF02590 SPOUT_MTase: Predicte 45.5 59 0.0013 23.9 4.9 47 128-174 58-110 (155)
98 KOG0332 ATP-dependent RNA heli 44.5 45 0.00097 28.5 4.5 44 129-173 323-366 (477)
99 PRK10565 putative carbohydrate 44.1 61 0.0013 28.6 5.6 34 133-167 56-93 (508)
100 PLN03050 pyridoxine (pyridoxam 43.7 42 0.00091 26.6 4.2 29 138-167 61-93 (246)
101 PRK09427 bifunctional indole-3 42.7 84 0.0018 27.4 6.1 87 75-164 143-235 (454)
102 COG2185 Sbm Methylmalonyl-CoA 42.5 80 0.0017 23.0 5.1 38 134-171 60-102 (143)
103 PLN03049 pyridoxine (pyridoxam 42.3 63 0.0014 28.2 5.4 29 138-167 60-92 (462)
104 PRK04837 ATP-dependent RNA hel 41.8 60 0.0013 27.5 5.1 33 138-171 257-289 (423)
105 PF04122 CW_binding_2: Putativ 39.6 46 0.00099 21.6 3.3 36 136-173 49-84 (92)
106 PRK11192 ATP-dependent RNA hel 39.0 75 0.0016 27.0 5.3 34 138-172 246-280 (434)
107 TIGR03372 putres_am_tran putre 38.6 52 0.0011 28.4 4.3 43 133-175 129-177 (442)
108 TIGR01587 cas3_core CRISPR-ass 38.4 63 0.0014 26.5 4.7 46 126-171 211-258 (358)
109 PLN02482 glutamate-1-semialdeh 37.9 59 0.0013 28.4 4.5 44 132-175 150-195 (474)
110 PLN02918 pyridoxine (pyridoxam 37.9 79 0.0017 28.3 5.3 29 138-167 136-168 (544)
111 COG2519 GCD14 tRNA(1-methylade 36.9 82 0.0018 25.3 4.8 45 121-165 172-217 (256)
112 COG1576 Uncharacterized conser 36.6 1.2E+02 0.0026 22.3 5.3 49 125-174 55-109 (155)
113 TIGR00640 acid_CoA_mut_C methy 36.2 94 0.002 22.0 4.7 22 79-100 21-46 (132)
114 PRK00278 trpC indole-3-glycero 35.9 1.1E+02 0.0023 24.4 5.4 76 88-164 162-237 (260)
115 KOG0326 ATP-dependent RNA heli 35.8 58 0.0013 27.3 3.9 37 129-166 315-351 (459)
116 PRK06918 4-aminobutyrate amino 35.8 71 0.0015 27.5 4.7 38 139-176 117-156 (451)
117 PF00289 CPSase_L_chain: Carba 35.8 44 0.00095 22.9 2.8 31 138-168 3-33 (110)
118 PF01488 Shikimate_DH: Shikima 35.8 86 0.0019 22.0 4.5 34 137-170 12-45 (135)
119 PRK04537 ATP-dependent RNA hel 35.6 84 0.0018 28.1 5.2 35 137-172 257-292 (572)
120 PRK06148 hypothetical protein; 35.2 59 0.0013 31.3 4.4 46 131-176 673-721 (1013)
121 PF00899 ThiF: ThiF family; I 34.7 59 0.0013 22.7 3.4 40 137-176 2-41 (135)
122 TIGR00614 recQ_fam ATP-depende 34.2 93 0.002 26.9 5.2 36 136-172 225-261 (470)
123 KOG0330 ATP-dependent RNA heli 33.7 86 0.0019 27.0 4.6 43 129-172 293-335 (476)
124 PRK10590 ATP-dependent RNA hel 33.1 1E+02 0.0022 26.6 5.2 34 138-172 246-280 (456)
125 PF11181 YflT: Heat induced st 32.7 76 0.0017 21.3 3.6 29 140-168 2-33 (103)
126 TIGR00853 pts-lac PTS system, 31.5 72 0.0016 21.2 3.2 37 137-174 3-44 (95)
127 PRK08117 4-aminobutyrate amino 31.3 81 0.0018 26.9 4.3 47 130-176 95-144 (433)
128 PRK08593 4-aminobutyrate amino 31.0 89 0.0019 26.9 4.5 37 139-175 105-143 (445)
129 PRK07678 aminotransferase; Val 30.8 88 0.0019 27.0 4.5 47 130-176 98-152 (451)
130 PRK11057 ATP-dependent DNA hel 30.3 1.1E+02 0.0024 27.5 5.1 34 138-172 238-271 (607)
131 PF07755 DUF1611: Protein of u 29.7 77 0.0017 26.0 3.7 34 143-177 122-157 (301)
132 PTZ00424 helicase 45; Provisio 29.6 1.3E+02 0.0029 24.9 5.3 37 135-172 266-302 (401)
133 PRK01297 ATP-dependent RNA hel 29.6 1.2E+02 0.0026 26.3 5.1 33 139-172 337-370 (475)
134 PRK11634 ATP-dependent RNA hel 29.4 1.2E+02 0.0026 27.6 5.2 36 135-171 244-279 (629)
135 TIGR01389 recQ ATP-dependent D 29.4 1.2E+02 0.0026 27.1 5.2 35 137-172 225-259 (591)
136 KOG0333 U5 snRNP-like RNA heli 28.9 1.2E+02 0.0027 27.2 4.9 35 137-172 517-552 (673)
137 COG4822 CbiK Cobalamin biosynt 28.5 1.5E+02 0.0033 23.4 4.8 42 126-167 123-173 (265)
138 KOG4284 DEAD box protein [Tran 28.4 34 0.00073 31.5 1.5 46 126-172 262-307 (980)
139 COG0514 RecQ Superfamily II DN 28.3 56 0.0012 29.5 2.8 33 139-172 233-265 (590)
140 PRK05639 4-aminobutyrate amino 28.3 94 0.002 26.9 4.2 45 131-175 106-153 (457)
141 PF05586 Ant_C: Anthrax recept 28.1 53 0.0012 21.8 2.0 18 151-168 61-78 (95)
142 PRK06917 hypothetical protein; 27.9 1.1E+02 0.0024 26.4 4.6 47 129-175 82-137 (447)
143 TIGR02689 ars_reduc_gluta arse 27.4 1E+02 0.0022 21.4 3.6 33 139-171 2-36 (126)
144 TIGR00700 GABAtrnsam 4-aminobu 27.2 1.2E+02 0.0026 25.8 4.6 37 139-175 96-134 (420)
145 PRK07495 4-aminobutyrate amino 26.9 1.2E+02 0.0026 26.0 4.5 37 139-175 103-141 (425)
146 PTZ00110 helicase; Provisional 25.9 1.5E+02 0.0032 26.3 5.1 44 128-172 367-412 (545)
147 TIGR00201 comF comF family pro 25.8 1.2E+02 0.0026 22.7 3.9 31 137-167 152-186 (190)
148 PRK12389 glutamate-1-semialdeh 25.4 1.1E+02 0.0024 26.1 4.2 44 132-175 104-149 (428)
149 PF02879 PGM_PMM_II: Phosphogl 25.3 1.4E+02 0.0031 19.6 3.9 27 138-164 22-49 (104)
150 PF14572 Pribosyl_synth: Phosp 25.2 94 0.002 23.6 3.2 26 142-167 92-117 (184)
151 PF03162 Y_phosphatase2: Tyros 25.2 90 0.0019 23.0 3.1 75 88-162 34-119 (164)
152 PRK00615 glutamate-1-semialdeh 24.9 1.1E+02 0.0025 26.2 4.1 49 127-175 99-150 (433)
153 PRK05769 4-aminobutyrate amino 24.9 1.4E+02 0.0031 25.7 4.7 36 140-175 117-155 (441)
154 COG2085 Predicted dinucleotide 24.7 3.4E+02 0.0073 21.1 6.2 27 137-163 147-175 (211)
155 PF03610 EIIA-man: PTS system 24.6 2.3E+02 0.0049 19.1 6.1 43 125-169 45-90 (116)
156 PRK12898 secA preprotein trans 24.6 2.6E+02 0.0056 25.7 6.4 34 137-171 473-507 (656)
157 KOG0685 Flavin-containing amin 24.6 1.4E+02 0.003 26.3 4.4 36 135-170 19-54 (498)
158 PRK07046 aminotransferase; Val 24.4 1E+02 0.0023 26.6 3.8 36 140-175 132-170 (453)
159 PRK10310 PTS system galactitol 24.3 2.2E+02 0.0047 18.8 5.1 35 139-174 4-44 (94)
160 PRK06916 adenosylmethionine--8 24.3 1.3E+02 0.0029 26.0 4.4 47 130-176 108-163 (460)
161 PRK09590 celB cellobiose phosp 24.2 94 0.002 21.1 2.8 35 139-174 3-42 (104)
162 TIGR00824 EIIA-man PTS system, 23.8 2.5E+02 0.0053 19.2 5.4 41 127-169 48-91 (116)
163 PF00975 Thioesterase: Thioest 23.7 86 0.0019 23.5 2.9 38 132-169 61-102 (229)
164 PRK05964 adenosylmethionine--8 23.7 1.6E+02 0.0035 24.9 4.8 43 133-175 97-148 (423)
165 PRK04914 ATP-dependent helicas 23.6 1.2E+02 0.0026 29.2 4.2 35 137-172 493-529 (956)
166 COG0529 CysC Adenylylsulfate k 23.5 2.4E+02 0.0051 21.7 5.0 21 149-170 40-60 (197)
167 PLN02347 GMP synthetase 23.4 1.9E+02 0.0041 25.8 5.3 44 127-171 219-266 (536)
168 cd00079 HELICc Helicase superf 23.3 2.3E+02 0.005 18.7 5.6 35 136-171 27-62 (131)
169 cd05565 PTS_IIB_lactose PTS_II 23.3 87 0.0019 21.1 2.5 35 139-174 2-41 (99)
170 PRK06062 hypothetical protein; 23.1 1.3E+02 0.0029 25.9 4.2 42 134-175 108-152 (451)
171 PF02302 PTS_IIB: PTS system, 23.0 1.2E+02 0.0026 19.2 3.1 24 139-162 1-30 (90)
172 TIGR00246 tRNA_RlmH_YbeA rRNA 23.0 1.4E+02 0.003 21.8 3.7 46 127-174 56-107 (153)
173 TIGR03158 cas3_cyano CRISPR-as 22.9 1.7E+02 0.0038 24.3 4.7 37 137-173 272-310 (357)
174 PRK07481 hypothetical protein; 22.4 1.3E+02 0.0029 25.9 4.0 38 139-176 105-151 (449)
175 PF12404 DUF3663: Peptidase ; 22.0 53 0.0012 21.2 1.2 34 135-169 23-59 (77)
176 PRK06058 4-aminobutyrate amino 22.0 1.9E+02 0.0041 24.8 4.9 37 139-175 119-157 (443)
177 cd05564 PTS_IIB_chitobiose_lic 21.7 1E+02 0.0022 20.4 2.6 34 140-174 2-40 (96)
178 PRK08360 4-aminobutyrate amino 21.5 1.5E+02 0.0033 25.5 4.2 46 130-175 93-141 (443)
179 PRK08297 L-lysine aminotransfe 21.3 1.7E+02 0.0036 25.3 4.4 40 136-175 108-162 (443)
180 PRK05965 hypothetical protein; 21.1 1.8E+02 0.0039 25.2 4.6 47 129-175 98-153 (459)
181 PRK07986 adenosylmethionine--8 21.1 1.5E+02 0.0033 25.4 4.2 44 132-175 97-148 (428)
182 PRK08335 translation initiatio 21.1 3.4E+02 0.0074 22.0 5.9 13 150-162 150-162 (275)
183 COG0001 HemL Glutamate-1-semia 20.7 1.4E+02 0.003 25.9 3.7 48 128-175 99-149 (432)
184 COG0182 Predicted translation 20.7 1.1E+02 0.0024 25.5 3.0 14 134-147 147-161 (346)
185 PRK06149 hypothetical protein; 20.6 1.4E+02 0.0031 28.6 4.1 43 133-175 636-681 (972)
186 PRK13809 orotate phosphoribosy 20.6 3E+02 0.0065 21.1 5.3 47 135-181 116-172 (206)
187 TIGR02804 ExbD_2 TonB system t 20.6 2.9E+02 0.0064 18.9 6.3 43 125-167 72-118 (121)
188 PF13399 LytR_C: LytR cell env 20.6 1.3E+02 0.0029 19.2 3.0 19 146-164 15-33 (90)
189 KOG1403 Predicted alanine-glyo 20.6 2.1E+02 0.0045 23.9 4.5 43 130-173 95-140 (452)
190 PRK09792 4-aminobutyrate trans 20.4 1.8E+02 0.0039 24.8 4.4 38 138-175 102-141 (421)
191 TIGR00537 hemK_rel_arch HemK-r 20.3 2.3E+02 0.0049 20.7 4.5 46 125-170 121-167 (179)
192 PRK11522 putrescine--2-oxoglut 20.3 1.4E+02 0.0031 25.8 3.8 42 134-175 137-184 (459)
193 TIGR00631 uvrb excinuclease AB 20.2 1.8E+02 0.0038 26.7 4.5 46 125-171 430-476 (655)
194 PRK05298 excinuclease ABC subu 20.0 1.8E+02 0.004 26.5 4.6 47 125-172 434-481 (652)
No 1
>PLN02160 thiosulfate sulfurtransferase
Probab=99.93 E-value=7.7e-25 Score=158.57 Aligned_cols=112 Identities=45% Similarity=0.816 Sum_probs=94.5
Q ss_pred CccccHHHHHHHHhCCCEEEEcCCHHhHhcCCCCCc--EEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChH
Q 030091 72 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA--INVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKR 148 (183)
Q Consensus 72 ~~~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgA--i~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~ 148 (183)
...++++++.++++++.+|||||++.||..|||||| +|+|+......+.+...++...+...++++++|| ||.+|.|
T Consensus 14 ~~~i~~~e~~~~~~~~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~~l~~~~~~~~~~~~~~~~~~IivyC~sG~R 93 (136)
T PLN02160 14 VVSVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSSLLNPADDILVGCQSGAR 93 (136)
T ss_pred eeEeCHHHHHHHHhCCCEEEECCCHHHHhcCCCCCcceecccchhcCcccccCCHHHHHHHHhccCCCCcEEEECCCcHH
Confidence 456889999999887788999999999999999999 8999843333344445566555555567888999 9999999
Q ss_pred HHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCCC
Q 030091 149 SMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 183 (183)
Q Consensus 149 s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~ 183 (183)
|..++..|...||++|++|.||+.+|.++|+|+++
T Consensus 94 S~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~ 128 (136)
T PLN02160 94 SLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQ 128 (136)
T ss_pred HHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccc
Confidence 99999999999999999999999999999999863
No 2
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.4e-24 Score=151.66 Aligned_cols=114 Identities=41% Similarity=0.707 Sum_probs=103.8
Q ss_pred CCCCccccHHHHHHHHhCC-CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCC-CCeEE-EeCC
Q 030091 69 VGVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRK-HDEII-GCQS 145 (183)
Q Consensus 69 ~~~~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~-~~~iv-~C~~ 145 (183)
...+..++.++++++++.+ .++||||+++||..||+|.+||||+......+...+++|.+......++ ++.|| +|.+
T Consensus 19 ~~~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiIf~C~S 98 (136)
T KOG1530|consen 19 ASNPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEIIFGCAS 98 (136)
T ss_pred cCCcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcceEeccccccccccccCCHHHHHHhcccCCCCCCcEEEEecc
Confidence 4566789999999999988 9999999999999999999999999877788888999999998877665 45899 9999
Q ss_pred ChHHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCC
Q 030091 146 GKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 182 (183)
Q Consensus 146 g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~ 182 (183)
|.||..|...|...||+||.+|.|||.+|.+.+.|..
T Consensus 99 G~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~ 135 (136)
T KOG1530|consen 99 GVRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK 135 (136)
T ss_pred CcchhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence 9999999999999999999999999999999988764
No 3
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.91 E-value=5e-24 Score=145.98 Aligned_cols=97 Identities=31% Similarity=0.493 Sum_probs=84.6
Q ss_pred ccccHHHHHHHHhCCCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHHHH
Q 030091 73 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMM 151 (183)
Q Consensus 73 ~~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s~~ 151 (183)
..++++++.++++.+.+|||+|+++||..+|||||+|+|+. .+......++++++|| ||++|.++..
T Consensus 2 ~~i~~~el~~~~~~~~~liDvR~~~e~~~~hi~ga~~ip~~------------~~~~~~~~~~~~~~iv~~c~~g~~s~~ 69 (99)
T cd01527 2 TTISPNDACELLAQGAVLVDIREPDEYLRERIPGARLVPLS------------QLESEGLPLVGANAIIFHCRSGMRTQQ 69 (99)
T ss_pred CccCHHHHHHHHHCCCEEEECCCHHHHHhCcCCCCEECChh------------HhcccccCCCCCCcEEEEeCCCchHHH
Confidence 35788999998888899999999999999999999999984 1222222367888999 9999999999
Q ss_pred HHHHHHHcCCCCeeEecccHHHHHhCCCCC
Q 030091 152 AATDLLNAGFAGITDIAGGFAAWRQNGLPT 181 (183)
Q Consensus 152 aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv 181 (183)
++..|.++||++|++|+||+.+|...|+|+
T Consensus 70 ~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 70 NAERLAAISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred HHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence 999999999999999999999999999875
No 4
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.91 E-value=1.3e-23 Score=146.56 Aligned_cols=97 Identities=23% Similarity=0.363 Sum_probs=82.3
Q ss_pred CCCccccHHHHHHHHhCC--CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcC--CCCCeEE-EeC
Q 030091 70 GVPTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEII-GCQ 144 (183)
Q Consensus 70 ~~~~~i~~~~~~~~~~~~--~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i--~~~~~iv-~C~ 144 (183)
.....++++++.++++++ .+|||||++.||..||||||+|+|+. .+......+ +++++|| ||.
T Consensus 7 ~~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~~------------~l~~~~~~l~~~~~~~ivv~C~ 74 (109)
T cd01533 7 RHTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPGA------------ELVLRVGELAPDPRTPIVVNCA 74 (109)
T ss_pred ccCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCHH------------HHHHHHHhcCCCCCCeEEEECC
Confidence 344578999999988754 68999999999999999999999993 333444444 4567899 999
Q ss_pred CChHHHHHHHHHHHcCCCC-eeEecccHHHHHhCC
Q 030091 145 SGKRSMMAATDLLNAGFAG-ITDIAGGFAAWRQNG 178 (183)
Q Consensus 145 ~g~~s~~aa~~L~~~G~~~-v~~l~GG~~~W~~~g 178 (183)
+|.||..+++.|+..||+| |++|+||+.+|..+|
T Consensus 75 ~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 75 GRTRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred CCchHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 9999999999999999998 899999999999875
No 5
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.90 E-value=2.2e-23 Score=145.11 Aligned_cols=99 Identities=31% Similarity=0.495 Sum_probs=87.9
Q ss_pred CccccHHHHHHHHhC-CCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHH
Q 030091 72 PTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRS 149 (183)
Q Consensus 72 ~~~i~~~~~~~~~~~-~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s 149 (183)
.+.++++++.+.++. +.+|||+|++.||..||||||+|+|+ ..+......++++++|+ ||.+|.+|
T Consensus 4 ~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA~~ip~------------~~l~~~~~~~~~~~~ivv~c~~g~~s 71 (108)
T PRK00162 4 FECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHLTN------------DSLGAFMRQADFDTPVMVMCYHGNSS 71 (108)
T ss_pred ccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCCeECCH------------HHHHHHHHhcCCCCCEEEEeCCCCCH
Confidence 456889999998864 58999999999999999999999998 34445556688889999 99999999
Q ss_pred HHHHHHHHHcCCCCeeEecccHHHHHhCCCCCC
Q 030091 150 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 182 (183)
Q Consensus 150 ~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~ 182 (183)
..++..|++.||+||++++||+.+|.+.++|++
T Consensus 72 ~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~ 104 (108)
T PRK00162 72 QGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEV 104 (108)
T ss_pred HHHHHHHHHCCchheEEecCCHHHHHhcCCCcc
Confidence 999999999999999999999999999999986
No 6
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.90 E-value=9.9e-24 Score=145.14 Aligned_cols=97 Identities=25% Similarity=0.335 Sum_probs=77.9
Q ss_pred cccHHHHHHHHhCC-CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHHHH
Q 030091 74 SVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMM 151 (183)
Q Consensus 74 ~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s~~ 151 (183)
.++++++.++++++ .+|||||++.||..||||||+|+|+..+. ...+.+... ..++++++|| ||.+|.||..
T Consensus 3 ~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~-----~~~~~~~~~-~~~~~~~~ivvyC~~G~rs~~ 76 (101)
T cd01518 3 YLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDVDTFR-----EFPFWLDEN-LDLLKGKKVLMYCTGGIRCEK 76 (101)
T ss_pred cCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccccCCCcccHh-----HhHHHHHhh-hhhcCCCEEEEECCCchhHHH
Confidence 57888998888754 89999999999999999999999985211 001111111 1247888999 9999999999
Q ss_pred HHHHHHHcCCCCeeEecccHHHHHh
Q 030091 152 AATDLLNAGFAGITDIAGGFAAWRQ 176 (183)
Q Consensus 152 aa~~L~~~G~~~v~~l~GG~~~W~~ 176 (183)
++..|..+||++|++|+||+.+|.+
T Consensus 77 a~~~L~~~G~~~v~~l~GG~~~W~~ 101 (101)
T cd01518 77 ASAYLKERGFKNVYQLKGGILKYLE 101 (101)
T ss_pred HHHHHHHhCCcceeeechhHHHHhC
Confidence 9999999999999999999999963
No 7
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.88 E-value=3e-22 Score=139.89 Aligned_cols=97 Identities=27% Similarity=0.521 Sum_probs=83.0
Q ss_pred ccccHHHHHHHHhCC---CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCC--
Q 030091 73 TSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSG-- 146 (183)
Q Consensus 73 ~~i~~~~~~~~~~~~---~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g-- 146 (183)
..++++++.++++.+ .+|||+|++.+|..||||||+|+|.. .+..+....++++++|| ||++|
T Consensus 8 ~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~-----------~l~~~~~~~i~~~~~vvvyc~~g~~ 76 (110)
T cd01521 8 FETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHR-----------EICENATAKLDKEKLFVVYCDGPGC 76 (110)
T ss_pred eecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHH-----------HhhhHhhhcCCCCCeEEEEECCCCC
Confidence 468889999988753 79999999999999999999999984 22223455688899999 99987
Q ss_pred hHHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCC
Q 030091 147 KRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT 181 (183)
Q Consensus 147 ~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv 181 (183)
.++..+++.|+++||+ |++|+||+.+|..+|+|+
T Consensus 77 ~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 77 NGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT 110 (110)
T ss_pred chHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence 4899999999999995 999999999999999885
No 8
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.88 E-value=3e-22 Score=134.99 Aligned_cols=88 Identities=34% Similarity=0.587 Sum_probs=77.9
Q ss_pred ccHHHHHHHHhCCCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHHHHHH
Q 030091 75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMMAA 153 (183)
Q Consensus 75 i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s~~aa 153 (183)
++++++.+++.++.++||+|++++|..||||||+|+|.. .+......++++++|| ||.+|.++..++
T Consensus 1 ~~~~e~~~~~~~~~~iiD~R~~~~~~~~hipgA~~ip~~------------~~~~~~~~~~~~~~vvl~c~~g~~a~~~a 68 (90)
T cd01524 1 VQWHELDNYRADGVTLIDVRTPQEFEKGHIKGAINIPLD------------ELRDRLNELPKDKEIIVYCAVGLRGYIAA 68 (90)
T ss_pred CCHHHHHHHhcCCCEEEECCCHHHHhcCCCCCCEeCCHH------------HHHHHHHhcCCCCcEEEEcCCChhHHHHH
Confidence 367888888877789999999999999999999999983 3444555678888999 999999999999
Q ss_pred HHHHHcCCCCeeEecccHHHHH
Q 030091 154 TDLLNAGFAGITDIAGGFAAWR 175 (183)
Q Consensus 154 ~~L~~~G~~~v~~l~GG~~~W~ 175 (183)
..|++.|| +|++|+||+.+|.
T Consensus 69 ~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 69 RILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred HHHHHCCC-CEEEecCCHHHhc
Confidence 99999999 8999999999996
No 9
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.88 E-value=2.2e-22 Score=138.08 Aligned_cols=96 Identities=25% Similarity=0.376 Sum_probs=77.8
Q ss_pred ccHHHHHHHHhCC--CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHHHH
Q 030091 75 VPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMM 151 (183)
Q Consensus 75 i~~~~~~~~~~~~--~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s~~ 151 (183)
|+++++.++++++ ++|||||++.||..||||||+|+|+...... ...........++++++|| ||.+|.+|..
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~----~~~~~~~~~~~~~~~~~ivv~C~~G~rs~~ 76 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFD----FLEIEEDILDQLPDDQEVTVICAKEGSSQF 76 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchHH----HHHhhHHHHhhCCCCCeEEEEcCCCCcHHH
Confidence 4678888888764 7999999999999999999999998521100 0000133456678899999 9999999999
Q ss_pred HHHHHHHcCCCCeeEecccHHHHH
Q 030091 152 AATDLLNAGFAGITDIAGGFAAWR 175 (183)
Q Consensus 152 aa~~L~~~G~~~v~~l~GG~~~W~ 175 (183)
++..|++.||+ +++|.||+.+|.
T Consensus 77 aa~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 77 VAELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred HHHHHHHcCce-eEEeCCcHHhhc
Confidence 99999999998 999999999996
No 10
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.88 E-value=2.6e-22 Score=143.88 Aligned_cols=101 Identities=29% Similarity=0.479 Sum_probs=78.4
Q ss_pred ccHHHHHHHHhCCCEEEEcCCHHhHhcCCCCCcEEeccccccCCCC----C------------------CCHHHHHHHh-
Q 030091 75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGM----T------------------KNLKFVEEVS- 131 (183)
Q Consensus 75 i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~----~------------------~~~~~~~~~~- 131 (183)
|+++++.++++++.+|||||++.||..||||||+|||+........ . ..+.++....
T Consensus 1 ~s~~el~~~l~~~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (128)
T cd01520 1 ITAEDLLALRKADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKLKRILNEAWE 80 (128)
T ss_pred CCHHHHHHHHhcCCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 5788999888877899999999999999999999999953221000 0 0011222221
Q ss_pred hcCCCCCeEE-EeC-CChHHHHHHHHHHHcCCCCeeEecccHHHHHh
Q 030091 132 TRFRKHDEII-GCQ-SGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ 176 (183)
Q Consensus 132 ~~i~~~~~iv-~C~-~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~ 176 (183)
..++++++|| ||+ +|.||..+++.|+.+|| +|++|+||+.+|..
T Consensus 81 ~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 81 ARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred hccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 3588899999 997 68999999999999999 59999999999975
No 11
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.88 E-value=2.1e-22 Score=139.30 Aligned_cols=100 Identities=26% Similarity=0.382 Sum_probs=79.4
Q ss_pred cHHHHHHHHh-C-CCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhc--CCCCCeEE-EeCCChHHH
Q 030091 76 PVRVAHELLQ-A-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEII-GCQSGKRSM 150 (183)
Q Consensus 76 ~~~~~~~~~~-~-~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--i~~~~~iv-~C~~g~~s~ 150 (183)
+++++.++++ . +.+|||+|++.||..||||||+|+|+....... ...++.+...+.. ++++++|| ||.+|.+|.
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~s~ 80 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPDAL-ALSEEEFEKKYGFPKPSKDKELIFYCKAGVRSK 80 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHHhhhhh-CCCHHHHHHHhcccCCCCCCeEEEECCCcHHHH
Confidence 4677778776 4 489999999999999999999999986432221 2233334444433 45688999 999999999
Q ss_pred HHHHHHHHcCCCCeeEecccHHHHHh
Q 030091 151 MAATDLLNAGFAGITDIAGGFAAWRQ 176 (183)
Q Consensus 151 ~aa~~L~~~G~~~v~~l~GG~~~W~~ 176 (183)
.+++.|..+||+||++|+||+.+|.+
T Consensus 81 ~~~~~l~~~G~~~v~~~~Gg~~~W~~ 106 (106)
T cd01519 81 AAAELARSLGYENVGNYPGSWLDWAA 106 (106)
T ss_pred HHHHHHHHcCCccceecCCcHHHHcC
Confidence 99999999999999999999999963
No 12
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.87 E-value=6.6e-22 Score=140.63 Aligned_cols=106 Identities=28% Similarity=0.390 Sum_probs=83.0
Q ss_pred CCCccccHHHHHHHHhC--CCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHH---HhhcCCCCCeEE-Ee
Q 030091 70 GVPTSVPVRVAHELLQA--GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE---VSTRFRKHDEII-GC 143 (183)
Q Consensus 70 ~~~~~i~~~~~~~~~~~--~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~---~~~~i~~~~~iv-~C 143 (183)
+....++++++.+++.+ +++|||+|++.||..||||||+|+|+...... ...+.. ....++++++|| ||
T Consensus 5 ~~~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~-----~~~~~~~~~~~~~~~~~~~ivv~C 79 (122)
T cd01526 5 SPEERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLSK-----AAELKSLQELPLDNDKDSPIYVVC 79 (122)
T ss_pred CcccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhhh-----hhhhhhhhhcccccCCCCcEEEEC
Confidence 44567899999998875 37899999999999999999999998522100 000000 012247788999 99
Q ss_pred CCChHHHHHHHHHHHcCC-CCeeEecccHHHHHhCCCC
Q 030091 144 QSGKRSMMAATDLLNAGF-AGITDIAGGFAAWRQNGLP 180 (183)
Q Consensus 144 ~~g~~s~~aa~~L~~~G~-~~v~~l~GG~~~W~~~g~p 180 (183)
++|.+|..++..|+++|| ++|++|+||+.+|..+..+
T Consensus 80 ~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~ 117 (122)
T cd01526 80 RRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDP 117 (122)
T ss_pred CCCCcHHHHHHHHHHcCCccceeeecchHHHHHHHhCc
Confidence 999999999999999999 7899999999999987554
No 13
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.87 E-value=7.2e-22 Score=135.82 Aligned_cols=91 Identities=31% Similarity=0.536 Sum_probs=76.8
Q ss_pred ccHHHHHHHHhCC---CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcC---CCCCeEE-EeCCCh
Q 030091 75 VPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF---RKHDEII-GCQSGK 147 (183)
Q Consensus 75 i~~~~~~~~~~~~---~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i---~~~~~iv-~C~~g~ 147 (183)
|+++++.+++..+ .+|||+|+++||..+|||||+|+|+. .+......+ +++++|| ||++|.
T Consensus 2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~------------~~~~~~~~~~~~~~~~~vv~~c~~g~ 69 (101)
T cd01528 2 ISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMS------------EIPERSKELDSDNPDKDIVVLCHHGG 69 (101)
T ss_pred CCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHH------------HHHHHHHHhcccCCCCeEEEEeCCCc
Confidence 5778888888754 78999999999999999999999983 222233333 3578999 999999
Q ss_pred HHHHHHHHHHHcCCCCeeEecccHHHHHhC
Q 030091 148 RSMMAATDLLNAGFAGITDIAGGFAAWRQN 177 (183)
Q Consensus 148 ~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~ 177 (183)
+|..++..|.+.||++|++|+||+.+|...
T Consensus 70 rs~~~~~~l~~~G~~~v~~l~GG~~~w~~~ 99 (101)
T cd01528 70 RSMQVAQWLLRQGFENVYNLQGGIDAWSLE 99 (101)
T ss_pred hHHHHHHHHHHcCCccEEEecCCHHHHhhh
Confidence 999999999999999999999999999764
No 14
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.87 E-value=6e-22 Score=134.78 Aligned_cols=89 Identities=29% Similarity=0.385 Sum_probs=72.7
Q ss_pred ccHHHHHHHHhCC---CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcC-CCCCeEE-EeCCChHH
Q 030091 75 VPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-RKHDEII-GCQSGKRS 149 (183)
Q Consensus 75 i~~~~~~~~~~~~---~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i-~~~~~iv-~C~~g~~s 149 (183)
|+++++.+++.++ +++||||++.||..||||||+|+|+. ++........ .++++|| ||.+|.+|
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~-----------~l~~~~~~~~~~~~~~iv~~c~~G~rs 69 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGG-----------QLVQETDHFAPVRGARIVLADDDGVRA 69 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHH-----------HHHHHHHHhcccCCCeEEEECCCCChH
Confidence 4678888888653 67999999999999999999999984 2222211112 2467888 99999999
Q ss_pred HHHHHHHHHcCCCCeeEecccHHHHH
Q 030091 150 MMAATDLLNAGFAGITDIAGGFAAWR 175 (183)
Q Consensus 150 ~~aa~~L~~~G~~~v~~l~GG~~~W~ 175 (183)
..++..|..+||+ |++|+||+.+|.
T Consensus 70 ~~aa~~L~~~G~~-v~~l~GG~~~W~ 94 (95)
T cd01534 70 DMTASWLAQMGWE-VYVLEGGLAAAL 94 (95)
T ss_pred HHHHHHHHHcCCE-EEEecCcHHHhc
Confidence 9999999999999 999999999996
No 15
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.87 E-value=1.2e-21 Score=133.17 Aligned_cols=89 Identities=34% Similarity=0.578 Sum_probs=79.2
Q ss_pred ccHHHHHHHHhC--CCEEEEcCCHHhHhc--CCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHH
Q 030091 75 VPVRVAHELLQA--GHRYLDVRTPEEFSA--GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRS 149 (183)
Q Consensus 75 i~~~~~~~~~~~--~~~lIDvR~~~e~~~--ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s 149 (183)
++++++.+++++ +++|||+|++.||.. ||||||+|+|+. .+......++++++|| ||.+|.+|
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~------------~~~~~~~~~~~~~~ivv~c~~g~~s 69 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDED------------SLDDWLGDLDRDRPVVVYCYHGNSS 69 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCHH------------HHHHHHhhcCCCCCEEEEeCCCChH
Confidence 577888888876 389999999999999 999999999993 4445556688899999 99999999
Q ss_pred HHHHHHHHHcCCCCeeEecccHHHHH
Q 030091 150 MMAATDLLNAGFAGITDIAGGFAAWR 175 (183)
Q Consensus 150 ~~aa~~L~~~G~~~v~~l~GG~~~W~ 175 (183)
..+++.|+..||++|++|+||+.+|.
T Consensus 70 ~~a~~~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 70 AQLAQALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred HHHHHHHHHcCCceEEEcCCCHHHhc
Confidence 99999999999999999999999996
No 16
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.87 E-value=8.9e-22 Score=158.62 Aligned_cols=138 Identities=20% Similarity=0.302 Sum_probs=103.3
Q ss_pred eEEecCCccccccCcccCCccccCC----------CCccccHHHHHHHHhC-CCEEEEcCCHHhHh-----------cCC
Q 030091 46 IGFISSKILSFCPKASLRGNLEAVG----------VPTSVPVRVAHELLQA-GHRYLDVRTPEEFS-----------AGH 103 (183)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~-~~~lIDvR~~~e~~-----------~gh 103 (183)
+..++||+..|.............. .....+.+++...++. +++|||+|+++||. .||
T Consensus 116 v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~Gh 195 (281)
T PRK11493 116 VSILAGGLAGWQRDDLLLEEGAVELPEGEFNAAFNPEAVVRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGH 195 (281)
T ss_pred EEEcCCCHHHHHHcCCCccCCCCCCCCCcccccCCccceecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCccccc
Confidence 4588999999975322111111100 1112344455545544 48999999999995 699
Q ss_pred CCCcEEeccccccCCCCCCCHHHHHHHhhc--CCCCCeEE-EeCCChHHHHHHHHHHHcCCCCeeEecccHHHHHh-CCC
Q 030091 104 ATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ-NGL 179 (183)
Q Consensus 104 IpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--i~~~~~iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~-~g~ 179 (183)
||||+|+|+..+...+.+..++.++..+.. ++++++|| ||++|.+|..++..|+.+||+||++|+|||.+|.. .++
T Consensus 196 IpgA~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~ 275 (281)
T PRK11493 196 IPGALNVPWTELVREGELKTTDELDAIFFGRGVSFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGARADL 275 (281)
T ss_pred CCCcCCCCHHHhcCCCCcCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccCCCC
Confidence 999999998765555566677777776654 67888999 99999999999999999999999999999999998 699
Q ss_pred CCCC
Q 030091 180 PTEP 183 (183)
Q Consensus 180 pv~~ 183 (183)
|+++
T Consensus 276 P~~~ 279 (281)
T PRK11493 276 PVEP 279 (281)
T ss_pred CcCC
Confidence 9874
No 17
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.87 E-value=2e-21 Score=144.54 Aligned_cols=109 Identities=20% Similarity=0.281 Sum_probs=82.8
Q ss_pred CCccccHHHHHHHHhCC-CEEEEcCCHH----hHhcC---------CCCCcEEeccccccCCCCC-CCHHHHHHHhhc--
Q 030091 71 VPTSVPVRVAHELLQAG-HRYLDVRTPE----EFSAG---------HATGAINVPYMYRVGSGMT-KNLKFVEEVSTR-- 133 (183)
Q Consensus 71 ~~~~i~~~~~~~~~~~~-~~lIDvR~~~----e~~~g---------hIpgAi~ip~~~~~~~~~~-~~~~~~~~~~~~-- 133 (183)
....|+++++.++++++ .+|||||++. ||..| |||||+|+|+.... .+. .....+...+..
T Consensus 34 ~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~--~l~~~~~~~~~~~l~~~~ 111 (162)
T TIGR03865 34 GARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYG--NLAPAWQAYFRRGLERAT 111 (162)
T ss_pred CccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCcEEecccCCC--CCCCchhHHHHHHHHHhc
Confidence 34578999999999765 8999999866 45544 99999999963110 111 111223333322
Q ss_pred -CCCCCeEE-EeCCCh-HHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCC
Q 030091 134 -FRKHDEII-GCQSGK-RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT 181 (183)
Q Consensus 134 -i~~~~~iv-~C~~g~-~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv 181 (183)
.+++++|| ||.+|. +|..+++.|+.+||++|++|+||+.+|..+|+|+
T Consensus 112 ~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 112 GGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence 36889999 999986 8999999999999999999999999999999986
No 18
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.87 E-value=1.2e-21 Score=134.67 Aligned_cols=100 Identities=28% Similarity=0.465 Sum_probs=76.7
Q ss_pred ccHHHHHHHHhC-CCEEEEcCCHHhH-hcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHHHH
Q 030091 75 VPVRVAHELLQA-GHRYLDVRTPEEF-SAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMM 151 (183)
Q Consensus 75 i~~~~~~~~~~~-~~~lIDvR~~~e~-~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s~~ 151 (183)
++++++.+++++ +.+|||+|++.+| ..||||||+|+|+..... +. ..+. ......++++++|| ||.+|.+|..
T Consensus 1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~--~~-~~~~-~~~~~~~~~~~~ivv~c~~g~~s~~ 76 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLEF--WA-DPDS-PYHKPAFAEDKPFVFYCASGWRSAL 76 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCcEEcccchhhh--hc-Cccc-cccccCCCCCCeEEEEcCCCCcHHH
Confidence 467888888874 5899999999998 579999999999842110 00 0000 00011367889999 9999999999
Q ss_pred HHHHHHHcCCCCeeEecccHHHHHhCC
Q 030091 152 AATDLLNAGFAGITDIAGGFAAWRQNG 178 (183)
Q Consensus 152 aa~~L~~~G~~~v~~l~GG~~~W~~~g 178 (183)
+++.|+.+||++|++|+||+.+|..+|
T Consensus 77 ~~~~l~~~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 77 AGKTLQDMGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred HHHHHHHcChHHhEeecCcHHHHhhcC
Confidence 999999999999999999999998764
No 19
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.86 E-value=2.9e-21 Score=137.08 Aligned_cols=104 Identities=23% Similarity=0.277 Sum_probs=87.3
Q ss_pred ccHHHHHHHHhC-CCEEEEcCCH-------HhHhcCCCCCcEEeccccccC-----CCCCCCHHHHHHHhhc--CCCCCe
Q 030091 75 VPVRVAHELLQA-GHRYLDVRTP-------EEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--FRKHDE 139 (183)
Q Consensus 75 i~~~~~~~~~~~-~~~lIDvR~~-------~e~~~ghIpgAi~ip~~~~~~-----~~~~~~~~~~~~~~~~--i~~~~~ 139 (183)
++++++.+++.. +.+|||+|++ .+|..||||||+|+|+..... .+++.+.+.+.+.... ++++++
T Consensus 2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (122)
T cd01448 2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISNDDT 81 (122)
T ss_pred cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCCCCE
Confidence 577888888876 5889999999 999999999999999854432 3456666666666553 678899
Q ss_pred EE-EeCC-ChHHHHHHHHHHHcCCCCeeEecccHHHHHhCC
Q 030091 140 II-GCQS-GKRSMMAATDLLNAGFAGITDIAGGFAAWRQNG 178 (183)
Q Consensus 140 iv-~C~~-g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g 178 (183)
|| ||++ |.++..+++.|+..||++|++|+||+.+|..+|
T Consensus 82 vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 82 VVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred EEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence 99 9998 589999999999999999999999999998764
No 20
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.86 E-value=2.6e-21 Score=141.54 Aligned_cols=91 Identities=25% Similarity=0.370 Sum_probs=80.1
Q ss_pred HHHHHhCC--CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHHHHHHHHH
Q 030091 80 AHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMMAATDL 156 (183)
Q Consensus 80 ~~~~~~~~--~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s~~aa~~L 156 (183)
+.++++++ ++|||||++.+|..||||||+|+|. ..+......++++.+|| ||.+|.+|..+++.|
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi~~~~------------~~l~~~l~~l~~~~~vVv~c~~g~~a~~aa~~L 69 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAWWVLR------------AQLAQALEKLPAAERYVLTCGSSLLARFAAADL 69 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHcCCCCCceeCCH------------HHHHHHHHhcCCCCCEEEEeCCChHHHHHHHHH
Confidence 34555544 7999999999999999999999998 45666666778888899 999999999999999
Q ss_pred HHcCCCCeeEecccHHHHHhCCCCCC
Q 030091 157 LNAGFAGITDIAGGFAAWRQNGLPTE 182 (183)
Q Consensus 157 ~~~G~~~v~~l~GG~~~W~~~g~pv~ 182 (183)
+..||++|++|+||+.+|..+|+|++
T Consensus 70 ~~~G~~~v~~L~GG~~aW~~~g~pl~ 95 (145)
T cd01535 70 AALTVKPVFVLEGGTAAWIAAGLPVE 95 (145)
T ss_pred HHcCCcCeEEecCcHHHHHHCCCCcc
Confidence 99999999999999999999999986
No 21
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.86 E-value=1.9e-21 Score=134.42 Aligned_cols=98 Identities=23% Similarity=0.349 Sum_probs=74.7
Q ss_pred ccHHHHHHHHhC---CCEEEEcCCHHhHhcCCCCCcEEeccccccCC--CCCCCHHHHHHHhhcCCCCCeEE-EeCCChH
Q 030091 75 VPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS--GMTKNLKFVEEVSTRFRKHDEII-GCQSGKR 148 (183)
Q Consensus 75 i~~~~~~~~~~~---~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~--~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~ 148 (183)
|+++++++++++ +++|||||++.||..||||||+|+|+...... .....+ ...++ .. ..+++|| ||.+|.+
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~-~~~~~-~~-~~~~~vv~~c~~g~~ 77 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEGELEQLP-TVPRL-EN-YKGKIIVIVSHSHKH 77 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhccccccccccc-chHHH-Hh-hcCCeEEEEeCCCcc
Confidence 578899998875 37899999999999999999999998533211 100000 00111 11 2367888 9999999
Q ss_pred HHHHHHHHHHcCCCCeeEecccHHHHH
Q 030091 149 SMMAATDLLNAGFAGITDIAGGFAAWR 175 (183)
Q Consensus 149 s~~aa~~L~~~G~~~v~~l~GG~~~W~ 175 (183)
|..+++.|..+||++|++|+||+.+|+
T Consensus 78 s~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 78 AALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred HHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 999999999999999999999999995
No 22
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.86 E-value=2.1e-21 Score=136.83 Aligned_cols=102 Identities=24% Similarity=0.446 Sum_probs=84.2
Q ss_pred ccHHHHHHHHhCC-CEEEEcCCHHhHhc-----------CCCCCcEEeccccccC-CCCCCCHHHHHHHhhc--CCCCCe
Q 030091 75 VPVRVAHELLQAG-HRYLDVRTPEEFSA-----------GHATGAINVPYMYRVG-SGMTKNLKFVEEVSTR--FRKHDE 139 (183)
Q Consensus 75 i~~~~~~~~~~~~-~~lIDvR~~~e~~~-----------ghIpgAi~ip~~~~~~-~~~~~~~~~~~~~~~~--i~~~~~ 139 (183)
++++++.++++++ ++|||+|+..||.. ||||||+|+|+..... .+.+.+++.+...+.. ++++++
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDEDGTFKSPEELRALFAALGITPDKP 80 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCCCCcCCHHHHHHHHHHcCCCCCCC
Confidence 4677888887654 89999999999987 9999999999864432 2344566677766665 567889
Q ss_pred EE-EeCCChHHHHHHHHHHHcCCCCeeEecccHHHHHh
Q 030091 140 II-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ 176 (183)
Q Consensus 140 iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~ 176 (183)
|| ||++|.+|..+++.|+.+||++|++|+||+.+|..
T Consensus 81 iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 118 (118)
T cd01449 81 VIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWGS 118 (118)
T ss_pred EEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhcC
Confidence 99 99999999999999999999999999999999963
No 23
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.86 E-value=3.1e-21 Score=158.06 Aligned_cols=109 Identities=17% Similarity=0.302 Sum_probs=91.9
Q ss_pred ccHHHHHHHHhC-CCEEEEcCCHHhH-----------hcCCCCCcEEecccccc-CCCCCCCHHHHHHHhhc--CCCCCe
Q 030091 75 VPVRVAHELLQA-GHRYLDVRTPEEF-----------SAGHATGAINVPYMYRV-GSGMTKNLKFVEEVSTR--FRKHDE 139 (183)
Q Consensus 75 i~~~~~~~~~~~-~~~lIDvR~~~e~-----------~~ghIpgAi~ip~~~~~-~~~~~~~~~~~~~~~~~--i~~~~~ 139 (183)
++.+++.+.++. +.+|||+|++.|| ..||||||+|+|+.... ..+.+.+.+.++.++.. ++++++
T Consensus 192 ~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~~~~~~~~el~~~~~~~gi~~~~~ 271 (320)
T PLN02723 192 WTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSSQTLLPAEELKKRFEQEGISLDSP 271 (320)
T ss_pred ecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCCCCCCCHHHHHHHHHhcCCCCCCC
Confidence 567788777765 4789999999998 46999999999996543 34567788888887764 788899
Q ss_pred EE-EeCCChHHHHHHHHHHHcCCCCeeEecccHHHHHhC-CCCCCC
Q 030091 140 II-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQN-GLPTEP 183 (183)
Q Consensus 140 iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~-g~pv~~ 183 (183)
|| ||++|.+|..+++.|+.+||++|++|+|||.+|... ++|+++
T Consensus 272 iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~~ 317 (320)
T PLN02723 272 IVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALPDTPVAT 317 (320)
T ss_pred EEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCccC
Confidence 99 999999999999999999999999999999999875 678763
No 24
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.86 E-value=2.9e-21 Score=137.23 Aligned_cols=91 Identities=29% Similarity=0.411 Sum_probs=76.4
Q ss_pred cccHHHHHHHHhC-------CCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHh-h-----cCCCCCeE
Q 030091 74 SVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS-T-----RFRKHDEI 140 (183)
Q Consensus 74 ~i~~~~~~~~~~~-------~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~-~-----~i~~~~~i 140 (183)
.|+++++.+++.+ +++|||||++.||..||||||+|+|.. +.+.... . .++++++|
T Consensus 3 ~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~-----------~~l~~~~~~~~~~~~~~~~~~v 71 (121)
T cd01530 3 RISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTK-----------DELEEFFLDKPGVASKKKRRVL 71 (121)
T ss_pred ccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcH-----------HHHHHHHHHhhcccccCCCCEE
Confidence 5888999888865 378999999999999999999999983 2222222 1 26788999
Q ss_pred E-EeC-CChHHHHHHHHHHHc------------CCCCeeEecccHHHHH
Q 030091 141 I-GCQ-SGKRSMMAATDLLNA------------GFAGITDIAGGFAAWR 175 (183)
Q Consensus 141 v-~C~-~g~~s~~aa~~L~~~------------G~~~v~~l~GG~~~W~ 175 (183)
| ||. +|.||..+++.|++. ||++|++|+||+.+|.
T Consensus 72 v~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 72 IFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred EEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 9 997 999999999999985 9999999999999984
No 25
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.85 E-value=2.8e-21 Score=136.50 Aligned_cols=101 Identities=29% Similarity=0.426 Sum_probs=82.0
Q ss_pred ccHHHHHHHHhC--CCEEEEcCCHHhHh-cCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHHH
Q 030091 75 VPVRVAHELLQA--GHRYLDVRTPEEFS-AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSM 150 (183)
Q Consensus 75 i~~~~~~~~~~~--~~~lIDvR~~~e~~-~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s~ 150 (183)
|+++++.+++++ +.+|||||++.||. .||||||+|+|+..+... .....+...+...++++++|| ||.+|.+|.
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~--~~~~~~~~~l~~~~~~~~~ivv~C~~G~rs~ 78 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDM--EINPNFLAELEEKVGKDRPVLLLCRSGNRSI 78 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhcccc--ccCHHHHHHHHhhCCCCCeEEEEcCCCccHH
Confidence 577889898876 48899999999999 999999999998533211 112334444444457888999 999999999
Q ss_pred HHHHHHHHcCCCCeeEecccHHHHHhC
Q 030091 151 MAATDLLNAGFAGITDIAGGFAAWRQN 177 (183)
Q Consensus 151 ~aa~~L~~~G~~~v~~l~GG~~~W~~~ 177 (183)
.++..|+++||++|+.|.||+.+|...
T Consensus 79 ~aa~~L~~~G~~~v~~l~gG~~~~~~~ 105 (117)
T cd01522 79 AAAEAAAQAGFTNVYNVLEGFEGDLDA 105 (117)
T ss_pred HHHHHHHHCCCCeEEECcCceecCCCC
Confidence 999999999999999999999999663
No 26
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.85 E-value=4.7e-21 Score=130.55 Aligned_cols=84 Identities=25% Similarity=0.402 Sum_probs=69.2
Q ss_pred CCCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHHHHHHHHHHHcCCCCe
Q 030091 86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMMAATDLLNAGFAGI 164 (183)
Q Consensus 86 ~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s~~aa~~L~~~G~~~v 164 (183)
++.+|||||++.+|..||||||+|+|+... ......++. +..++++++|| ||++|.++..+++.|+..||+||
T Consensus 11 ~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~-----~~~~~~~~~-~~~~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v 84 (96)
T cd01529 11 PGTALLDVRAEDEYAAGHLPGKRSIPGAAL-----VLRSQELQA-LEAPGRATRYVLTCDGSLLARFAAQELLALGGKPV 84 (96)
T ss_pred CCeEEEeCCCHHHHcCCCCCCcEeCCHHHh-----cCCHHHHHH-hhcCCCCCCEEEEeCChHHHHHHHHHHHHcCCCCE
Confidence 458999999999999999999999997421 122233322 33457788899 99999999999999999999999
Q ss_pred eEecccHHHHH
Q 030091 165 TDIAGGFAAWR 175 (183)
Q Consensus 165 ~~l~GG~~~W~ 175 (183)
++|+||+.+|.
T Consensus 85 ~~l~GG~~~W~ 95 (96)
T cd01529 85 ALLDGGTSAWV 95 (96)
T ss_pred EEeCCCHHHhc
Confidence 99999999996
No 27
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.85 E-value=9.8e-21 Score=151.31 Aligned_cols=140 Identities=21% Similarity=0.353 Sum_probs=109.8
Q ss_pred cceEEecCCccccccCcccCCccccCCC----------CccccHHHHHHHHhCC-CEEEEcCCHHhHhc----------C
Q 030091 44 DNIGFISSKILSFCPKASLRGNLEAVGV----------PTSVPVRVAHELLQAG-HRYLDVRTPEEFSA----------G 102 (183)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~----------g 102 (183)
.-+.+|+||++.|...+...+....... ...++...+....+.. .+|||+|++++|.. |
T Consensus 117 ~~V~iLdGG~~~W~~~g~p~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~G 196 (285)
T COG2897 117 ENVRILDGGLPAWKAAGLPLETEPPEPPPTTFSAKYNVKAVVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAG 196 (285)
T ss_pred CceEEecCCHHHHHHcCCCccCCCCCCCCccccccCCccccCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCC
Confidence 4478999999999875444433211111 1224556666666654 78999999999997 9
Q ss_pred CCCCcEEeccccccC-CCCCCCHHHHHHHhh--cCCCCCeEE-EeCCChHHHHHHHHHHHcCCCCeeEecccHHHHHhC-
Q 030091 103 HATGAINVPYMYRVG-SGMTKNLKFVEEVST--RFRKHDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQN- 177 (183)
Q Consensus 103 hIpgAi~ip~~~~~~-~~~~~~~~~~~~~~~--~i~~~~~iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~- 177 (183)
|||||+|+|+..... .+++..++.++.+.+ .++++++|| ||.+|.+|...+..|+.+|+.++.+|+|+|.+|.+.
T Consensus 197 HIPGAiNipw~~~~~~~~~~~~~~~~~~l~~~~gi~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~ 276 (285)
T COG2897 197 HIPGAINIPWTDLVDDGGLFKSPEEIARLYADAGIDPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDP 276 (285)
T ss_pred CCCCCcCcCHHHHhcCCCccCcHHHHHHHHHhcCCCCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCC
Confidence 999999999976664 567778888888774 489999999 999999999999999999999889999999999885
Q ss_pred CCCCCC
Q 030091 178 GLPTEP 183 (183)
Q Consensus 178 g~pv~~ 183 (183)
+.|+++
T Consensus 277 ~~PV~~ 282 (285)
T COG2897 277 DRPVET 282 (285)
T ss_pred CCcccc
Confidence 568763
No 28
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.85 E-value=1e-20 Score=128.15 Aligned_cols=95 Identities=34% Similarity=0.568 Sum_probs=74.3
Q ss_pred CCCEEEEcCCHHhHhcCCCCCcEEeccccccCCC-CCCCHHHHHHH-hhcCCCCCeEE-EeCCChHHHHHHHHHHHcCCC
Q 030091 86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSG-MTKNLKFVEEV-STRFRKHDEII-GCQSGKRSMMAATDLLNAGFA 162 (183)
Q Consensus 86 ~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~-~~~~~~~~~~~-~~~i~~~~~iv-~C~~g~~s~~aa~~L~~~G~~ 162 (183)
++++|||+|++.||..+|||||+|+|........ ......+.... ...++++++|| ||.+|.++..+++.|++.||+
T Consensus 3 ~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~ 82 (100)
T smart00450 3 EKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVVYCRSGNRSAKAAWLLRELGFK 82 (100)
T ss_pred CCEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCcCHHHHHHHHHHcCCCCCCeEEEEeCCCcHHHHHHHHHHHcCCC
Confidence 4589999999999999999999999985433221 11111111111 23367888999 999999999999999999999
Q ss_pred CeeEecccHHHHHhCCCC
Q 030091 163 GITDIAGGFAAWRQNGLP 180 (183)
Q Consensus 163 ~v~~l~GG~~~W~~~g~p 180 (183)
+|++|+||+.+|...+.|
T Consensus 83 ~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 83 NVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred ceEEecCCHHHHHhcCCC
Confidence 999999999999998764
No 29
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.84 E-value=2.3e-20 Score=156.64 Aligned_cols=133 Identities=26% Similarity=0.434 Sum_probs=104.3
Q ss_pred eeeeeecCCcccceEEecCCccccccCcccCCccccCCCCccccHHHHHHHHhCC--CEEEEcCCHHhHhcCCCCCcEEe
Q 030091 33 LLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINV 110 (183)
Q Consensus 33 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~lIDvR~~~e~~~ghIpgAi~i 110 (183)
.+++.++|.|+.+..+. ++..||..... ..........++++++.++++++ ++|||+|+++||..+|||||+|+
T Consensus 251 ~~~~~~~~~C~~~~~~~--~~~~~c~~~~~--~~~~~~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAini 326 (392)
T PRK07878 251 TIKIRKDPSTPKITELI--DYEAFCGVVSD--EAQQAAAGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQLI 326 (392)
T ss_pred eEeeccCCCCCcccccc--cchhhcccccc--cccccCCCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCEEc
Confidence 36788899998766555 57777752211 11113345679999999998764 68999999999999999999999
Q ss_pred ccccccCCCCCCCHHHHH-HHhhcCCCCCeEE-EeCCChHHHHHHHHHHHcCCCCeeEecccHHHHHhCCCC
Q 030091 111 PYMYRVGSGMTKNLKFVE-EVSTRFRKHDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLP 180 (183)
Q Consensus 111 p~~~~~~~~~~~~~~~~~-~~~~~i~~~~~iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p 180 (183)
|+. +... .....++++++|| ||++|.+|..+++.|++.||++|++|+||+.+|.++..+
T Consensus 327 p~~-----------~l~~~~~~~~l~~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~~ 387 (392)
T PRK07878 327 PKS-----------EILSGEALAKLPQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVAWAKQVDP 387 (392)
T ss_pred ChH-----------HhcchhHHhhCCCCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHHHHHHhcCC
Confidence 984 1111 2345678899999 999999999999999999999999999999999987544
No 30
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.84 E-value=1.9e-20 Score=130.21 Aligned_cols=102 Identities=31% Similarity=0.548 Sum_probs=78.4
Q ss_pred cHHHHHHHHh-CCCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHH----HHHHhhcCCCCCeEE-EeCCChHH
Q 030091 76 PVRVAHELLQ-AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKF----VEEVSTRFRKHDEII-GCQSGKRS 149 (183)
Q Consensus 76 ~~~~~~~~~~-~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~----~~~~~~~i~~~~~iv-~C~~g~~s 149 (183)
+++++++++. .+++|||+|++.+|..||||||+|+|+............+. .......++++++|| ||.+|.++
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~~~ 80 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGWRS 80 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSCHH
T ss_pred CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeeccccc
Confidence 5788989883 45999999999999999999999999954422222222232 233344568888899 99988887
Q ss_pred HHHHHH-----HHHcCCCCeeEecccHHHHHhC
Q 030091 150 MMAATD-----LLNAGFAGITDIAGGFAAWRQN 177 (183)
Q Consensus 150 ~~aa~~-----L~~~G~~~v~~l~GG~~~W~~~ 177 (183)
..++.. |..+||++|++|+||+.+|.++
T Consensus 81 ~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~ 113 (113)
T PF00581_consen 81 GSAAAARVAWILKKLGFKNVYILDGGFEAWKAE 113 (113)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred chhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence 776666 8889999999999999999863
No 31
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.84 E-value=1.9e-20 Score=156.52 Aligned_cols=98 Identities=35% Similarity=0.591 Sum_probs=86.7
Q ss_pred ccccHHHHHHHHhCCCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhc--CCCCCeEE-EeCCChHH
Q 030091 73 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEII-GCQSGKRS 149 (183)
Q Consensus 73 ~~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--i~~~~~iv-~C~~g~~s 149 (183)
..++++++.++++++.+|||||+++||..||||||+|+|+. .+...... .+++++|| ||++|.+|
T Consensus 3 ~~is~~el~~~l~~~~~ivDvR~~~e~~~ghIpgAi~ip~~------------~l~~~~~~~~~~~~~~IvvyC~~G~rs 70 (376)
T PRK08762 3 REISPAEARARAAQGAVLIDVREAHERASGQAEGALRIPRG------------FLELRIETHLPDRDREIVLICASGTRS 70 (376)
T ss_pred ceeCHHHHHHHHhCCCEEEECCCHHHHhCCcCCCCEECCHH------------HHHHHHhhhcCCCCCeEEEEcCCCcHH
Confidence 46889999999988899999999999999999999999983 33333333 36788999 99999999
Q ss_pred HHHHHHHHHcCCCCeeEecccHHHHHhCCCCCC
Q 030091 150 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 182 (183)
Q Consensus 150 ~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~ 182 (183)
..+++.|++.||++|++|+||+.+|.++|+|++
T Consensus 71 ~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~ 103 (376)
T PRK08762 71 AHAAATLRELGYTRVASVAGGFSAWKDAGLPLE 103 (376)
T ss_pred HHHHHHHHHcCCCceEeecCcHHHHHhcCCccc
Confidence 999999999999999999999999999999986
No 32
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.83 E-value=4.9e-20 Score=161.68 Aligned_cols=138 Identities=20% Similarity=0.312 Sum_probs=106.3
Q ss_pred ceEEecCCccccccCcccCCcccc----------CCCCccccHHHHHHHHhC-CCEEEEcCCHHhHh--------cCCCC
Q 030091 45 NIGFISSKILSFCPKASLRGNLEA----------VGVPTSVPVRVAHELLQA-GHRYLDVRTPEEFS--------AGHAT 105 (183)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~i~~~~~~~~~~~-~~~lIDvR~~~e~~--------~ghIp 105 (183)
-+.+++||+.+|............ ......++.+++.+.+++ +++|||+|+++||. .||||
T Consensus 109 ~V~iLdGG~~aW~~ag~p~~~~~~~~~~~~~~~~~~~~~~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIP 188 (610)
T PRK09629 109 GYHYLDGGVLAWEAQALPLSTDVPPVAGGPVTLTLHDEPTATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIP 188 (610)
T ss_pred CEEEcCCCHHHHHHcCCccccCCCCCCCcceeeccCCcccccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCC
Confidence 457899999999864322111100 011124677888888765 47899999999995 69999
Q ss_pred CcEEecccccc-CCCCCCCHHHHHHHhhc--CCCCCeEE-EeCCChHHHHHHHHHHHcCCCCeeEecccHHHHHhC-CCC
Q 030091 106 GAINVPYMYRV-GSGMTKNLKFVEEVSTR--FRKHDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQN-GLP 180 (183)
Q Consensus 106 gAi~ip~~~~~-~~~~~~~~~~~~~~~~~--i~~~~~iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~-g~p 180 (183)
||+|+|+.... ..+.+...+.+++++.. ++++++|| ||++|.+|..+++.|+.+||++|++|+|||.+|... ++|
T Consensus 189 GAvnip~~~~~~~~~~lk~~~el~~~~~~~Gi~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lP 268 (610)
T PRK09629 189 GAVNFEWTAGMDKARNLRIRQDMPEILRDLGITPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTP 268 (610)
T ss_pred CCeecCHHHhcCCCCCCCCHHHHHHHHHHcCCCCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCc
Confidence 99999985433 33456777778877765 67889999 999999999999999999999999999999999875 778
Q ss_pred CC
Q 030091 181 TE 182 (183)
Q Consensus 181 v~ 182 (183)
++
T Consensus 269 v~ 270 (610)
T PRK09629 269 VE 270 (610)
T ss_pred cc
Confidence 76
No 33
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.83 E-value=2.9e-20 Score=125.83 Aligned_cols=80 Identities=24% Similarity=0.436 Sum_probs=65.8
Q ss_pred CCCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCC-CCCeEE-EeCCChH--HHHHHHHHHHcCC
Q 030091 86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-KHDEII-GCQSGKR--SMMAATDLLNAGF 161 (183)
Q Consensus 86 ~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~-~~~~iv-~C~~g~~--s~~aa~~L~~~G~ 161 (183)
++++|||+|++.||..+|||||+|+|.. .+.......++ ++++|| ||.+|.+ |..+++.|++.||
T Consensus 9 ~~~~liDvR~~~e~~~~hi~ga~~ip~~-----------~~~~~~~~~~~~~~~~ivl~c~~G~~~~s~~aa~~L~~~G~ 77 (92)
T cd01532 9 EEIALIDVREEDPFAQSHPLWAANLPLS-----------RLELDAWVRIPRRDTPIVVYGEGGGEDLAPRAARRLSELGY 77 (92)
T ss_pred CCeEEEECCCHHHHhhCCcccCeeCCHH-----------HHHhhhHhhCCCCCCeEEEEeCCCCchHHHHHHHHHHHcCc
Confidence 4589999999999999999999999984 22112222343 478899 9999876 6799999999999
Q ss_pred CCeeEecccHHHHHh
Q 030091 162 AGITDIAGGFAAWRQ 176 (183)
Q Consensus 162 ~~v~~l~GG~~~W~~ 176 (183)
++|++|+||+.+|.+
T Consensus 78 ~~v~~l~GG~~~W~~ 92 (92)
T cd01532 78 TDVALLEGGLQGWRA 92 (92)
T ss_pred cCEEEccCCHHHHcC
Confidence 999999999999963
No 34
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.82 E-value=9.6e-20 Score=132.21 Aligned_cols=101 Identities=20% Similarity=0.256 Sum_probs=82.1
Q ss_pred ccHHHHHHHHh-----CCCEEEEcCCH--------HhHhc------------CCCCCcEEeccccccC-----CCCCCCH
Q 030091 75 VPVRVAHELLQ-----AGHRYLDVRTP--------EEFSA------------GHATGAINVPYMYRVG-----SGMTKNL 124 (183)
Q Consensus 75 i~~~~~~~~~~-----~~~~lIDvR~~--------~e~~~------------ghIpgAi~ip~~~~~~-----~~~~~~~ 124 (183)
++++++.+.++ .+.+|||+|.. ++|.. ||||||+|+|+..... ...+.+.
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~~ 80 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPSE 80 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCCH
Confidence 46788888887 34899999987 89988 9999999999854321 1334455
Q ss_pred HHHHHHhhc--CCCCCeEE-EeCC---ChHHHHHHHHHHHcCCCCeeEecccHHHHH
Q 030091 125 KFVEEVSTR--FRKHDEII-GCQS---GKRSMMAATDLLNAGFAGITDIAGGFAAWR 175 (183)
Q Consensus 125 ~~~~~~~~~--i~~~~~iv-~C~~---g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~ 175 (183)
+.++..+.. ++++++|| ||++ |..+.++++.|+.+|+++|++|+||+.+|.
T Consensus 81 ~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 81 AEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 667776654 77889999 9986 788999999999999999999999999996
No 35
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.82 E-value=9.2e-20 Score=146.91 Aligned_cols=111 Identities=19% Similarity=0.204 Sum_probs=91.3
Q ss_pred ccccHHHHHHHHhCC-CEEEEcCC----------HHhHhcCCCCCcEEeccccccC-----CCCCCCHHHHHHHhhc--C
Q 030091 73 TSVPVRVAHELLQAG-HRYLDVRT----------PEEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--F 134 (183)
Q Consensus 73 ~~i~~~~~~~~~~~~-~~lIDvR~----------~~e~~~ghIpgAi~ip~~~~~~-----~~~~~~~~~~~~~~~~--i 134 (183)
..++++++.+.++++ ++|||+|+ +.+|..||||||+|+|+..... ..++..++.+...+.. +
T Consensus 5 ~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 84 (281)
T PRK11493 5 WFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMRELGV 84 (281)
T ss_pred cccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHcCC
Confidence 358889999888764 89999996 7899999999999999854322 2344566777777766 5
Q ss_pred CCCCeEE-EeCCChH-HHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCCC
Q 030091 135 RKHDEII-GCQSGKR-SMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 183 (183)
Q Consensus 135 ~~~~~iv-~C~~g~~-s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~ 183 (183)
+++++|| ||.++.+ +.++++.|..+||++|++|+||+.+|.++|+|+++
T Consensus 85 ~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~ 135 (281)
T PRK11493 85 NQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEE 135 (281)
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccC
Confidence 7889999 9998764 66888999999999999999999999999999863
No 36
>PRK01415 hypothetical protein; Validated
Probab=99.81 E-value=1e-19 Score=142.98 Aligned_cols=100 Identities=18% Similarity=0.239 Sum_probs=81.8
Q ss_pred CccccHHHHHHHHhC-CCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHH
Q 030091 72 PTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRS 149 (183)
Q Consensus 72 ~~~i~~~~~~~~~~~-~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s 149 (183)
...|+++++.+++++ +++|||||++.||..||||||+|+|..... ..+.+.. ....++++++|+ ||.+|.||
T Consensus 111 g~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~gAinip~~~f~-----e~~~~~~-~~~~~~k~k~Iv~yCtgGiRs 184 (247)
T PRK01415 111 GEYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFKSAINPNTKTFK-----QFPAWVQ-QNQELLKGKKIAMVCTGGIRC 184 (247)
T ss_pred ccccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcCCCCCCChHHHh-----hhHHHHh-hhhhhcCCCeEEEECCCChHH
Confidence 457999999999975 489999999999999999999999973110 0011111 123467889999 99999999
Q ss_pred HHHHHHHHHcCCCCeeEecccHHHHHhC
Q 030091 150 MMAATDLLNAGFAGITDIAGGFAAWRQN 177 (183)
Q Consensus 150 ~~aa~~L~~~G~~~v~~l~GG~~~W~~~ 177 (183)
..++..|++.||++|+.|.||+.+|.++
T Consensus 185 ~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~ 212 (247)
T PRK01415 185 EKSTSLLKSIGYDEVYHLKGGILQYLED 212 (247)
T ss_pred HHHHHHHHHcCCCcEEEechHHHHHHHh
Confidence 9999999999999999999999999875
No 37
>PRK07411 hypothetical protein; Validated
Probab=99.81 E-value=2.6e-19 Score=150.12 Aligned_cols=139 Identities=26% Similarity=0.374 Sum_probs=101.3
Q ss_pred eeeeeecCCcccceEEecCCccccccCccc-CCccccCCCCccccHHHHHHHHhCC---CEEEEcCCHHhHhcCCCCCcE
Q 030091 33 LLSLTVDQQRCDNIGFISSKILSFCPKASL-RGNLEAVGVPTSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAI 108 (183)
Q Consensus 33 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~---~~lIDvR~~~e~~~ghIpgAi 108 (183)
.++++++|.|+.+..+. .+..||..... ............++++++.++++.+ .+|||||++.||..||||||+
T Consensus 243 ~~~~~~~~~c~~i~~~~--~~~~~~G~~~~~~~~~~~~~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAi 320 (390)
T PRK07411 243 ELKLRPNPERPVIEKLI--DYEQFCGIPQAKAAEAAQKAEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSV 320 (390)
T ss_pred EEeccCCCCCCcccccc--chhhhcccccccccccccccccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCE
Confidence 46777888887765544 56667641110 0111123445679999999988753 689999999999999999999
Q ss_pred EeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCC
Q 030091 109 NVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT 181 (183)
Q Consensus 109 ~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv 181 (183)
|+|+.++... ... .....++++++|| ||.+|.||..+++.|++.||++ +.|.||+.+|.++..|.
T Consensus 321 niP~~~l~~~------~~~-~~l~~l~~d~~IVvyC~~G~RS~~aa~~L~~~G~~~-~~l~GG~~~W~~~~~p~ 386 (390)
T PRK07411 321 LVPLPDIENG------PGV-EKVKELLNGHRLIAHCKMGGRSAKALGILKEAGIEG-TNVKGGITAWSREVDPS 386 (390)
T ss_pred EccHHHhhcc------cch-HHHhhcCCCCeEEEECCCCHHHHHHHHHHHHcCCCe-EEecchHHHHHHhcCCC
Confidence 9998522111 001 1234466788999 9999999999999999999985 57999999999876654
No 38
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.81 E-value=1.7e-19 Score=158.29 Aligned_cols=110 Identities=20% Similarity=0.205 Sum_probs=93.4
Q ss_pred ccccHHHHHHHHhCC-CEEEEcCCHHhHhcCCCCCcEEecccccc-----CCCCCCCHHHHHHHhhc--CCCCCeEE-Ee
Q 030091 73 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRV-----GSGMTKNLKFVEEVSTR--FRKHDEII-GC 143 (183)
Q Consensus 73 ~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpgAi~ip~~~~~-----~~~~~~~~~~~~~~~~~--i~~~~~iv-~C 143 (183)
..|+++++.++++++ ++|||+|++.+|..||||||+|+++.... ..+++.+.+.+...+.. ++++++|| ||
T Consensus 9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~~d~~VVvYd 88 (610)
T PRK09629 9 LVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHNPDAVYVVYD 88 (610)
T ss_pred ceecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEEC
Confidence 468999999999764 89999999999999999999999974321 23456666777777666 57789999 99
Q ss_pred CCC-hHHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCC
Q 030091 144 QSG-KRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 182 (183)
Q Consensus 144 ~~g-~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~ 182 (183)
++| .++.+++|.|+.+||++|++|+||+.+|..+|+|++
T Consensus 89 ~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~ 128 (610)
T PRK09629 89 DEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLS 128 (610)
T ss_pred CCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccc
Confidence 976 578899999999999999999999999999999875
No 39
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.81 E-value=1.6e-19 Score=143.44 Aligned_cols=101 Identities=19% Similarity=0.247 Sum_probs=80.5
Q ss_pred CCccccHHHHHHHHhC-------CCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-E
Q 030091 71 VPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-G 142 (183)
Q Consensus 71 ~~~~i~~~~~~~~~~~-------~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~ 142 (183)
....+++.++.+++++ +.+|||||++.||+.||||||+|+|.... ...+.++......+ ++++|| |
T Consensus 108 ~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f-----~~~~~~l~~~~~~~-kdk~Ivvy 181 (257)
T PRK05320 108 RAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKF-----TEFPEALAAHRADL-AGKTVVSF 181 (257)
T ss_pred cCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHh-----hhhHHHHHhhhhhc-CCCeEEEE
Confidence 3457899999888865 27899999999999999999999999411 01112222222223 678999 9
Q ss_pred eCCChHHHHHHHHHHHcCCCCeeEecccHHHHHhC
Q 030091 143 CQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQN 177 (183)
Q Consensus 143 C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~ 177 (183)
|.+|.|+..++..|++.||++|++|.||+.+|.++
T Consensus 182 C~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~ 216 (257)
T PRK05320 182 CTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFEE 216 (257)
T ss_pred CCCCHHHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence 99999999999999999999999999999999874
No 40
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.81 E-value=3.3e-19 Score=146.11 Aligned_cols=111 Identities=18% Similarity=0.218 Sum_probs=90.7
Q ss_pred ccccHHHHHHHHhC-CCEEEEcC--------C-HHhHhcCCCCCcEEeccccccC-----CCCCCCHHHHHHHhhc--CC
Q 030091 73 TSVPVRVAHELLQA-GHRYLDVR--------T-PEEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--FR 135 (183)
Q Consensus 73 ~~i~~~~~~~~~~~-~~~lIDvR--------~-~~e~~~ghIpgAi~ip~~~~~~-----~~~~~~~~~~~~~~~~--i~ 135 (183)
..|+++++.+++++ +.+|||+| + ..+|..||||||+|+++..+.. ..++..++.+...+.. +.
T Consensus 22 ~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~~~~~lp~~~~~~~~l~~~Gi~ 101 (320)
T PLN02723 22 PVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTDLPHMLPSEEAFAAAVSALGIE 101 (320)
T ss_pred ceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCCcCCCCCCHHHHHHHHHHcCCC
Confidence 47899999999875 48899996 3 3789999999999999754332 2455666777777776 55
Q ss_pred CCCeEE-EeCCCh-HHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCCC
Q 030091 136 KHDEII-GCQSGK-RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 183 (183)
Q Consensus 136 ~~~~iv-~C~~g~-~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~ 183 (183)
++++|| ||.+|. .+.++++.|+.+||++|++|+||+.+|..+|+|+++
T Consensus 102 ~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~ 151 (320)
T PLN02723 102 NKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVES 151 (320)
T ss_pred CCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCccc
Confidence 788999 998775 466889999999999999999999999999999863
No 41
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.80 E-value=2.5e-19 Score=124.32 Aligned_cols=86 Identities=40% Similarity=0.669 Sum_probs=74.3
Q ss_pred CCCEEEEcCCHHhHhcCCCCC-cEEeccccccCCCCCCCHHHHHHHhhc--CCCCCeEE-EeCCChHHHHHHHHHHHcCC
Q 030091 86 AGHRYLDVRTPEEFSAGHATG-AINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEII-GCQSGKRSMMAATDLLNAGF 161 (183)
Q Consensus 86 ~~~~lIDvR~~~e~~~ghIpg-Ai~ip~~~~~~~~~~~~~~~~~~~~~~--i~~~~~iv-~C~~g~~s~~aa~~L~~~G~ 161 (183)
.+.+|||||++.||..+|||| ++|+|...+ ...... .+++++|| ||.+|.||..++..|+..||
T Consensus 19 ~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~------------~~~~~~~~~~~~~~ivv~C~~G~rS~~aa~~L~~~G~ 86 (110)
T COG0607 19 EDAVLLDVREPEEYERGHIPGAAINIPLSEL------------KAAENLLELPDDDPIVVYCASGVRSAAAAAALKLAGF 86 (110)
T ss_pred CCCEEEeccChhHhhhcCCCcceeeeecccc------------hhhhcccccCCCCeEEEEeCCCCChHHHHHHHHHcCC
Confidence 459999999999999999999 999999522 221111 57889999 99999999999999999999
Q ss_pred CCeeEecccHHHHHhCCCCCCC
Q 030091 162 AGITDIAGGFAAWRQNGLPTEP 183 (183)
Q Consensus 162 ~~v~~l~GG~~~W~~~g~pv~~ 183 (183)
++++++.||+.+|..+++|++.
T Consensus 87 ~~~~~l~gG~~~w~~~~~~~~~ 108 (110)
T COG0607 87 TNVYNLDGGIDAWKGAGLPLVR 108 (110)
T ss_pred ccccccCCcHHHHHhcCCCccc
Confidence 9998999999999999998763
No 42
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.80 E-value=1.6e-19 Score=120.31 Aligned_cols=80 Identities=40% Similarity=0.674 Sum_probs=68.7
Q ss_pred hCCCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHH-HhhcCCCCCeEE-EeCCChHHHHHHHHHHHcCCC
Q 030091 85 QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE-VSTRFRKHDEII-GCQSGKRSMMAATDLLNAGFA 162 (183)
Q Consensus 85 ~~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~-~~~~i~~~~~iv-~C~~g~~s~~aa~~L~~~G~~ 162 (183)
..+..|||+|++.+|..+|||||+|+|+. +.... ....++++++|| ||.+|.++..+++.|++.||+
T Consensus 8 ~~~~~iiD~R~~~~~~~~~i~ga~~~~~~-----------~~~~~~~~~~~~~~~~vv~~c~~~~~a~~~~~~l~~~G~~ 76 (89)
T cd00158 8 DEDAVLLDVREPEEYAAGHIPGAINIPLS-----------ELEERAALLELDKDKPIVVYCRSGNRSARAAKLLRKAGGT 76 (89)
T ss_pred CCCeEEEECCCHHHHhccccCCCEecchH-----------HHhhHHHhhccCCCCeEEEEeCCCchHHHHHHHHHHhCcc
Confidence 34589999999999999999999999994 22222 244567888999 999999999999999999999
Q ss_pred CeeEecccHHHHH
Q 030091 163 GITDIAGGFAAWR 175 (183)
Q Consensus 163 ~v~~l~GG~~~W~ 175 (183)
++++|.||+.+|.
T Consensus 77 ~v~~l~gG~~~w~ 89 (89)
T cd00158 77 NVYNLEGGMLAWK 89 (89)
T ss_pred cEEEecCChhhcC
Confidence 9999999999994
No 43
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.80 E-value=4.4e-19 Score=122.02 Aligned_cols=78 Identities=32% Similarity=0.557 Sum_probs=66.0
Q ss_pred CCCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhc--CCCCCeEE-EeCCChHHHHHHHHHHHcCCC
Q 030091 86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEII-GCQSGKRSMMAATDLLNAGFA 162 (183)
Q Consensus 86 ~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--i~~~~~iv-~C~~g~~s~~aa~~L~~~G~~ 162 (183)
....+||+|+++||..||||||+|+|+. .+...... .+++++|| ||.+|.+|..++..|.++||+
T Consensus 17 ~~~~lIDvR~~~ef~~ghIpgAinip~~------------~l~~~l~~~~~~~~~~vvlyC~~G~rS~~aa~~L~~~G~~ 84 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQEHIQGAINIPLK------------EIKEHIATAVPDKNDTVKLYCNAGRQSGMAKDILLDMGYT 84 (101)
T ss_pred cCCEEEECCCHHHHhcCCCCCCEECCHH------------HHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHcCCC
Confidence 3478999999999999999999999993 33333333 34667898 999999999999999999999
Q ss_pred CeeEecccHHHHHh
Q 030091 163 GITDIAGGFAAWRQ 176 (183)
Q Consensus 163 ~v~~l~GG~~~W~~ 176 (183)
+|+++ ||+.+|..
T Consensus 85 ~v~~~-GG~~~~~~ 97 (101)
T TIGR02981 85 HAENA-GGIKDIAM 97 (101)
T ss_pred eEEec-CCHHHhhh
Confidence 99975 99999975
No 44
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.79 E-value=5.3e-19 Score=122.15 Aligned_cols=77 Identities=31% Similarity=0.531 Sum_probs=65.3
Q ss_pred CCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcC--CCCCeEE-EeCCChHHHHHHHHHHHcCCCC
Q 030091 87 GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEII-GCQSGKRSMMAATDLLNAGFAG 163 (183)
Q Consensus 87 ~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i--~~~~~iv-~C~~g~~s~~aa~~L~~~G~~~ 163 (183)
+-++||+|+++||..+|||||+|+|+. .+......+ +++++|| ||++|.+|..++..|.+.||++
T Consensus 20 ~~~lIDvR~~~ef~~ghIpGAiniP~~------------~l~~~l~~l~~~~~~~IVlyC~~G~rS~~aa~~L~~~G~~~ 87 (104)
T PRK10287 20 AEHWIDVRVPEQYQQEHVQGAINIPLK------------EVKERIATAVPDKNDTVKLYCNAGRQSGQAKEILSEMGYTH 87 (104)
T ss_pred CCEEEECCCHHHHhcCCCCccEECCHH------------HHHHHHHhcCCCCCCeEEEEeCCChHHHHHHHHHHHcCCCe
Confidence 368999999999999999999999983 333344443 4567889 9999999999999999999999
Q ss_pred eeEecccHHHHHh
Q 030091 164 ITDIAGGFAAWRQ 176 (183)
Q Consensus 164 v~~l~GG~~~W~~ 176 (183)
|++ .||+.+|..
T Consensus 88 v~~-~GG~~~~~~ 99 (104)
T PRK10287 88 AEN-AGGLKDIAM 99 (104)
T ss_pred EEe-cCCHHHHhh
Confidence 987 699999974
No 45
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.79 E-value=4.4e-19 Score=124.35 Aligned_cols=96 Identities=22% Similarity=0.390 Sum_probs=73.7
Q ss_pred ccccHHHHHHHHhCC---CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhc--CCCCCeEE-EeC-C
Q 030091 73 TSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEII-GCQ-S 145 (183)
Q Consensus 73 ~~i~~~~~~~~~~~~---~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--i~~~~~iv-~C~-~ 145 (183)
..|+++++.+++..+ .+|||||+. ||..||||||+|+|+..+. ..+..+... .+++++|| ||. +
T Consensus 2 ~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~--------~~~~~~~~~~~~~~~~~iv~yC~~~ 72 (113)
T cd01531 2 SYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFK--------AQLNQLVQLLSGSKKDTVVFHCALS 72 (113)
T ss_pred CcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHh--------hCHHHHHHHHhcCCCCeEEEEeecC
Confidence 457889999988753 689999999 9999999999999984111 112222222 25678899 998 7
Q ss_pred ChHHHHHHHHHHH--------cCCCCeeEecccHHHHHhC
Q 030091 146 GKRSMMAATDLLN--------AGFAGITDIAGGFAAWRQN 177 (183)
Q Consensus 146 g~~s~~aa~~L~~--------~G~~~v~~l~GG~~~W~~~ 177 (183)
|.|+..++..|.+ .||.||++|+||+.+|.+.
T Consensus 73 ~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 73 QVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred CcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 7888888777654 4999999999999999863
No 46
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.78 E-value=1.2e-18 Score=142.01 Aligned_cols=101 Identities=24% Similarity=0.345 Sum_probs=80.8
Q ss_pred CCccccHHHHHHHHhCC-CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChH
Q 030091 71 VPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKR 148 (183)
Q Consensus 71 ~~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~ 148 (183)
....++++++.++++++ ++|||||++.||..||||||+|+|+..+. .....+... ....++++|| ||.+|.|
T Consensus 110 ~~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~-----~~~~~l~~~-~~~~kdk~IvvyC~~G~R 183 (314)
T PRK00142 110 VGTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENAIEPDIETFR-----EFPPWVEEN-LDPLKDKKVVMYCTGGIR 183 (314)
T ss_pred CCcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCCEeCCHHHhh-----hhHHHHHHh-cCCCCcCeEEEECCCCcH
Confidence 34578999999888764 89999999999999999999999984211 011111111 1245788999 9999999
Q ss_pred HHHHHHHHHHcCCCCeeEecccHHHHHhC
Q 030091 149 SMMAATDLLNAGFAGITDIAGGFAAWRQN 177 (183)
Q Consensus 149 s~~aa~~L~~~G~~~v~~l~GG~~~W~~~ 177 (183)
+..++..|++.||++|++|+||+.+|.+.
T Consensus 184 s~~aa~~L~~~Gf~~V~~L~GGi~~w~~~ 212 (314)
T PRK00142 184 CEKASAWMKHEGFKEVYQLEGGIITYGED 212 (314)
T ss_pred HHHHHHHHHHcCCCcEEEecchHHHHHHh
Confidence 99999999999999999999999999774
No 47
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.76 E-value=2.1e-18 Score=120.92 Aligned_cols=93 Identities=25% Similarity=0.336 Sum_probs=69.2
Q ss_pred cccHHHHHHHHhCC-------CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcC--CCCCeEE-Ee
Q 030091 74 SVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEII-GC 143 (183)
Q Consensus 74 ~i~~~~~~~~~~~~-------~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i--~~~~~iv-~C 143 (183)
.+++++++++++++ .+|||||++ ||..||||||+|+|+... .+.+......+ .+..+|| ||
T Consensus 3 ~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~--------~~~~~~~~~~~~~~~~~~iv~~C 73 (113)
T cd01443 3 YISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSC--------YQTLPQVYALFSLAGVKLAIFYC 73 (113)
T ss_pred ccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHH--------HHHHHHHHHHhhhcCCCEEEEEC
Confidence 57889999998764 789999999 999999999999998421 11222222222 3456788 99
Q ss_pred CC-ChHHHHHHHHHH----HcCC--CCeeEecccHHHHH
Q 030091 144 QS-GKRSMMAATDLL----NAGF--AGITDIAGGFAAWR 175 (183)
Q Consensus 144 ~~-g~~s~~aa~~L~----~~G~--~~v~~l~GG~~~W~ 175 (183)
.+ |.||..++..|. +.|| .++++|+||+.+|.
T Consensus 74 ~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 74 GSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred CCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 96 678877776544 3475 68999999999995
No 48
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.74 E-value=8.7e-18 Score=138.44 Aligned_cols=102 Identities=28% Similarity=0.430 Sum_probs=76.7
Q ss_pred HHHHHHHHhCCCEEEEcCCHHhHhcCCCCCcEEeccccccCC----------C---------CCCCHHHH---HHHhhcC
Q 030091 77 VRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGS----------G---------MTKNLKFV---EEVSTRF 134 (183)
Q Consensus 77 ~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~----------~---------~~~~~~~~---~~~~~~i 134 (183)
..++.+++.++.+|||||++.||..||||||+|+|+.+.... + .+..++.. ......+
T Consensus 5 ~~~~~~~~~~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~~~~~~~~~~~ 84 (345)
T PRK11784 5 AQDFRALFLNDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIAAHREEAWADF 84 (345)
T ss_pred HHHHHHHHhCCCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHHHHHHHHHHhc
Confidence 567777777889999999999999999999999999532210 0 11111111 1222233
Q ss_pred C-CCCeEE-EeC-CChHHHHHHHHHHHcCCCCeeEecccHHHHHhCCC
Q 030091 135 R-KHDEII-GCQ-SGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGL 179 (183)
Q Consensus 135 ~-~~~~iv-~C~-~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~ 179 (183)
+ ++++|| ||. +|.||..+++.|...|| +|++|+||+.+|...++
T Consensus 85 ~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~ 131 (345)
T PRK11784 85 PRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVI 131 (345)
T ss_pred ccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhH
Confidence 3 778899 995 78999999999999999 58999999999987654
No 49
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.73 E-value=1.3e-17 Score=135.74 Aligned_cols=93 Identities=30% Similarity=0.433 Sum_probs=69.3
Q ss_pred CCEEEEcCCHHhHhcCCCCCcEEeccccccCC---CCC-------------------CCHHHHHHHhhcCCCCCeEE-Ee
Q 030091 87 GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS---GMT-------------------KNLKFVEEVSTRFRKHDEII-GC 143 (183)
Q Consensus 87 ~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~---~~~-------------------~~~~~~~~~~~~i~~~~~iv-~C 143 (183)
..+|||||++.||..||||||+|+|+.+.... +.. ..++.+.......++++.|| ||
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvvyC 81 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADGPPQPLLYC 81 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEEEE
Confidence 36899999999999999999999999532210 000 01122333333345565688 99
Q ss_pred C-CChHHHHHHHHHHHcCCCCeeEecccHHHHHhCCCC
Q 030091 144 Q-SGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLP 180 (183)
Q Consensus 144 ~-~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p 180 (183)
. +|.||..+++.|..+|| +|++|+||+.+|...+.+
T Consensus 82 ~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~ 118 (311)
T TIGR03167 82 WRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVID 118 (311)
T ss_pred CCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhh
Confidence 5 79999999999999999 699999999999887654
No 50
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.73 E-value=2.1e-17 Score=137.06 Aligned_cols=94 Identities=32% Similarity=0.531 Sum_probs=77.2
Q ss_pred CCccccHHHHHHHHhCCCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHh-hcCCCCCeEE-EeCCChH
Q 030091 71 VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS-TRFRKHDEII-GCQSGKR 148 (183)
Q Consensus 71 ~~~~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~-~~i~~~~~iv-~C~~g~~ 148 (183)
....++.+++.++ ..+.+|||||+++||..+|||||+|+|+. +...... ..++++++|| ||++|.+
T Consensus 259 ~~~~i~~~~~~~~-~~~~~IIDVR~~~ef~~ghIpgAinip~~-----------~l~~~~~~~~~~~~~~IvvyC~~G~r 326 (355)
T PRK05597 259 FGEVLDVPRVSAL-PDGVTLIDVREPSEFAAYSIPGAHNVPLS-----------AIREGANPPSVSAGDEVVVYCAAGVR 326 (355)
T ss_pred cccccCHHHHHhc-cCCCEEEECCCHHHHccCcCCCCEEeCHH-----------HhhhccccccCCCCCeEEEEcCCCHH
Confidence 3456778888744 45689999999999999999999999994 2211111 2357788899 9999999
Q ss_pred HHHHHHHHHHcCCCCeeEecccHHHHHh
Q 030091 149 SMMAATDLLNAGFAGITDIAGGFAAWRQ 176 (183)
Q Consensus 149 s~~aa~~L~~~G~~~v~~l~GG~~~W~~ 176 (183)
|..+++.|++.||++|++|+||+.+|.+
T Consensus 327 S~~Aa~~L~~~G~~nV~~L~GGi~~W~~ 354 (355)
T PRK05597 327 SAQAVAILERAGYTGMSSLDGGIEGWLD 354 (355)
T ss_pred HHHHHHHHHHcCCCCEEEecCcHHHHhh
Confidence 9999999999999999999999999975
No 51
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.73 E-value=4e-17 Score=130.64 Aligned_cols=112 Identities=22% Similarity=0.263 Sum_probs=93.3
Q ss_pred CccccHHHHHHHHhC------CCEEEEcCCH--HhHhcCCCCCcEEecccccc-----CCCCCCCHHHHHHHhhc--CCC
Q 030091 72 PTSVPVRVAHELLQA------GHRYLDVRTP--EEFSAGHATGAINVPYMYRV-----GSGMTKNLKFVEEVSTR--FRK 136 (183)
Q Consensus 72 ~~~i~~~~~~~~~~~------~~~lIDvR~~--~e~~~ghIpgAi~ip~~~~~-----~~~~~~~~~~~~~~~~~--i~~ 136 (183)
...|+++++.+.+++ ++.+++++.. .+|..+|||||+++++.... ..+++.+++.+...+.. |..
T Consensus 10 ~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~GI~~ 89 (285)
T COG2897 10 EFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGELGIRN 89 (285)
T ss_pred ceEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHHcCCCC
Confidence 456899999998864 3566666555 89999999999999985443 25788888888888776 788
Q ss_pred CCeEE-EeCC-ChHHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCCC
Q 030091 137 HDEII-GCQS-GKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 183 (183)
Q Consensus 137 ~~~iv-~C~~-g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~ 183 (183)
+.+|| |.+. +..|.+++|.|+.+|+++|++|+||+.+|.++|+|++.
T Consensus 90 d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~ 138 (285)
T COG2897 90 DDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLET 138 (285)
T ss_pred CCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccC
Confidence 89999 9864 56688999999999999999999999999999999873
No 52
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.69 E-value=2.1e-16 Score=113.64 Aligned_cols=101 Identities=19% Similarity=0.168 Sum_probs=72.8
Q ss_pred ccHHHHHHHHhC---CCEEEEcCCHHhHhcCCCCCcEEeccccccCC----------CCCCCHHHHHHHhhcCCCCCeEE
Q 030091 75 VPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS----------GMTKNLKFVEEVSTRFRKHDEII 141 (183)
Q Consensus 75 i~~~~~~~~~~~---~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~----------~~~~~~~~~~~~~~~i~~~~~iv 141 (183)
|+++++.++++. +.+|||+|+..+|..||||||+|+|+...... .++..++.... +... ++++||
T Consensus 2 is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~-~~~~VV 79 (132)
T cd01446 2 IDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDR-LRRG-ESLAVV 79 (132)
T ss_pred cCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhcccchhhhhhcCCHHHHHH-HhcC-CCCeEE
Confidence 688999999874 48999999999999999999999998532210 01222222222 2222 567888
Q ss_pred -EeCCChH---------HHHHHHHHHH--cCCCCeeEecccHHHHHhC
Q 030091 142 -GCQSGKR---------SMMAATDLLN--AGFAGITDIAGGFAAWRQN 177 (183)
Q Consensus 142 -~C~~g~~---------s~~aa~~L~~--~G~~~v~~l~GG~~~W~~~ 177 (183)
||.++.+ +..++..|.. .|+.+|++|+||+.+|.+.
T Consensus 80 vYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~~ 127 (132)
T cd01446 80 VYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSSE 127 (132)
T ss_pred EEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHhh
Confidence 9997764 5566667766 4678899999999999763
No 53
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.67 E-value=2.3e-16 Score=131.39 Aligned_cols=92 Identities=17% Similarity=0.255 Sum_probs=72.2
Q ss_pred cccHHHHHHHHhCC-CEEEEcCCHHhHhcCCCC---CcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChH
Q 030091 74 SVPVRVAHELLQAG-HRYLDVRTPEEFSAGHAT---GAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKR 148 (183)
Q Consensus 74 ~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIp---gAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~ 148 (183)
.++++++.+++.++ .+|||||+++||..|||| ||+|||+..+... .++ ......++++ +|| ||.+|.|
T Consensus 272 ~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~~~-----~~~-~~~l~~~~~~-~Ivv~C~sG~R 344 (370)
T PRK05600 272 RTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGASLKLPLSAITDD-----ADI-LHALSPIDGD-NVVVYCASGIR 344 (370)
T ss_pred ccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCccEeCcHHHhhcc-----hhh-hhhccccCCC-cEEEECCCChh
Confidence 68899999988765 789999999999999998 5999998421100 000 1122334555 788 9999999
Q ss_pred HHHHHHHHHHcCCCC-eeEecccHH
Q 030091 149 SMMAATDLLNAGFAG-ITDIAGGFA 172 (183)
Q Consensus 149 s~~aa~~L~~~G~~~-v~~l~GG~~ 172 (183)
|..++..|++.||++ |++|.||+.
T Consensus 345 S~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 345 SADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred HHHHHHHHHHcCCCCceEEeccccC
Confidence 999999999999996 999999974
No 54
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.54 E-value=1.2e-14 Score=117.09 Aligned_cols=169 Identities=21% Similarity=0.257 Sum_probs=114.4
Q ss_pred ccchhhhhhc--ccCCCCCCccccCCCCCcceeeeeeecCCcc------cceEEecCCccccccCccc-CCccccCCCCc
Q 030091 3 ATSLISLSSF--AAGASSLPPVLCPHGNNRRGLLSLTVDQQRC------DNIGFISSKILSFCPKASL-RGNLEAVGVPT 73 (183)
Q Consensus 3 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 73 (183)
+++.|++.+. ..+++.|--|..-++..+...++ .+.+.|. +++... +|..||.+... ...........
T Consensus 241 ALE~iKli~~~~~~~s~~lllfdg~~~~~r~irlR-~r~~~C~~Cg~n~tit~~~--dYe~fCg~~~~~~~~l~lL~~~~ 317 (427)
T KOG2017|consen 241 ALETIKLIAGIGESLSGRLLLFDGLSGHFRTIRLR-SRRPKCAVCGKNPTITSLI--DYELFCGSSATDKCPLKLLEPDE 317 (427)
T ss_pred HHHHHHHHHccCccCCcceEEEecccceeEEEEec-cCCCCCcccCCCCccCccc--chhcccCCccccccchhcCChhh
Confidence 3444444443 23455566666666666655555 3444443 555444 89999973222 22334456667
Q ss_pred cccHHHHHHHHhCC--CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCC-CCCeEE-EeCCChHH
Q 030091 74 SVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-KHDEII-GCQSGKRS 149 (183)
Q Consensus 74 ~i~~~~~~~~~~~~--~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~-~~~~iv-~C~~g~~s 149 (183)
.|+..+++++++++ .+++|||++.||+..|+|+|+|||+..+.... - +.....++ ..++|+ +|..|..|
T Consensus 318 Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~~------~-~~~~~~~~~~~~~I~ViCrrGNdS 390 (427)
T KOG2017|consen 318 RVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEAVNIPLKELRSRS------G-KKLQGDLNTESKDIFVICRRGNDS 390 (427)
T ss_pred cccHHHHHHHHhcCCCeEEEeccCcceEEEEecccccccchhhhhhhh------h-hhhcccccccCCCEEEEeCCCCch
Confidence 89999999999874 89999999999999999999999995222110 0 11112233 346788 99999999
Q ss_pred HHHHHHHHHcCCC-CeeEecccHHHHHhCCCCC
Q 030091 150 MMAATDLLNAGFA-GITDIAGGFAAWRQNGLPT 181 (183)
Q Consensus 150 ~~aa~~L~~~G~~-~v~~l~GG~~~W~~~g~pv 181 (183)
.++.+.|++...+ +|+.+.||+.+|..+-.|.
T Consensus 391 Q~Av~~Lre~~~~~~vrDvigGl~~w~~~vd~~ 423 (427)
T KOG2017|consen 391 QRAVRILREKFPDSSVRDVIGGLKAWAAKVDPN 423 (427)
T ss_pred HHHHHHHHhhCCchhhhhhhhHHHHHHHhcCcC
Confidence 9999999977654 4678889999998865443
No 55
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.50 E-value=1.9e-14 Score=114.07 Aligned_cols=100 Identities=23% Similarity=0.331 Sum_probs=82.4
Q ss_pred CccccHHHHHHHHhCC-CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHH
Q 030091 72 PTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRS 149 (183)
Q Consensus 72 ~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s 149 (183)
-+.++++++.+++.++ .++||+|+..||+.||..||++.+.. .+-..+.++.+..+.+ ++++|+ ||.+|.|.
T Consensus 112 G~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~-----tFrefP~~v~~~~~~~-~~KkVvmyCTGGIRC 185 (308)
T COG1054 112 GTYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIE-----TFREFPAWVEENLDLL-KDKKVVMYCTGGIRC 185 (308)
T ss_pred cCccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecCccCCChh-----hhhhhHHHHHHHHHhc-cCCcEEEEcCCceee
Confidence 4568899999998764 99999999999999999999999984 2333345555544444 445899 99999999
Q ss_pred HHHHHHHHHcCCCCeeEecccHHHHHhC
Q 030091 150 MMAATDLLNAGFAGITDIAGGFAAWRQN 177 (183)
Q Consensus 150 ~~aa~~L~~~G~~~v~~l~GG~~~W~~~ 177 (183)
.++..+|...||++||.|+||+-.+.++
T Consensus 186 EKas~~m~~~GF~eVyhL~GGIl~Y~e~ 213 (308)
T COG1054 186 EKASAWMKENGFKEVYHLEGGILKYLED 213 (308)
T ss_pred hhhHHHHHHhcchhhhcccchHHHHhhh
Confidence 9999999999999999999999988664
No 56
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.49 E-value=9.7e-14 Score=119.51 Aligned_cols=78 Identities=17% Similarity=0.247 Sum_probs=66.3
Q ss_pred HHHHHHhCCCEEEEcCCHHhHhcCCCCC----cEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHHHHHH
Q 030091 79 VAHELLQAGHRYLDVRTPEEFSAGHATG----AINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMMAA 153 (183)
Q Consensus 79 ~~~~~~~~~~~lIDvR~~~e~~~ghIpg----Ai~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s~~aa 153 (183)
+..+.+..+.++||||+++||..+|||| |+|+|+. .+......++++++|| ||.+|.+|..++
T Consensus 399 ~~~~~~~~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~------------~l~~~~~~l~~~~~iivyC~~G~rS~~aa 466 (482)
T PRK01269 399 ETVSELPPDDVIIDIRSPDEQEDKPLKLEGVEVKSLPFY------------KLSTQFGDLDQSKTYLLYCDRGVMSRLQA 466 (482)
T ss_pred HHHHhcCCCCEEEECCCHHHHhcCCCCCCCceEEECCHH------------HHHHHHhhcCCCCeEEEECCCCHHHHHHH
Confidence 3444445678999999999999999999 9999994 3444455678888999 999999999999
Q ss_pred HHHHHcCCCCeeEec
Q 030091 154 TDLLNAGFAGITDIA 168 (183)
Q Consensus 154 ~~L~~~G~~~v~~l~ 168 (183)
..|.+.||+||++|.
T Consensus 467 ~~L~~~G~~nv~~y~ 481 (482)
T PRK01269 467 LYLREQGFSNVKVYR 481 (482)
T ss_pred HHHHHcCCccEEecC
Confidence 999999999999875
No 57
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=2.4e-12 Score=103.62 Aligned_cols=98 Identities=23% Similarity=0.350 Sum_probs=74.2
Q ss_pred CCCCccccHHHHHHHHhCC-------CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhc---CC---
Q 030091 69 VGVPTSVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR---FR--- 135 (183)
Q Consensus 69 ~~~~~~i~~~~~~~~~~~~-------~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~---i~--- 135 (183)
......|+++.++.++++. ++|||+|-+.||..|||+||+||+.. +.+...+-. ..
T Consensus 152 ~~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~-----------~~~~~~f~~~~~~~~~~ 220 (325)
T KOG3772|consen 152 SQDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSK-----------ELLQDFFLLKDGVPSGS 220 (325)
T ss_pred cccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccH-----------hhhhhhhcccccccccc
Confidence 3445679999999999752 67999999999999999999999984 333332221 11
Q ss_pred CCCeEE-EeC-CChHHHHHHHHHHH------------cCCCCeeEecccHHHHHhC
Q 030091 136 KHDEII-GCQ-SGKRSMMAATDLLN------------AGFAGITDIAGGFAAWRQN 177 (183)
Q Consensus 136 ~~~~iv-~C~-~g~~s~~aa~~L~~------------~G~~~v~~l~GG~~~W~~~ 177 (183)
+...+| ||. +..|...+|..|+. +-|..+|+|+||+..|-..
T Consensus 221 ~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~ 276 (325)
T KOG3772|consen 221 KRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN 276 (325)
T ss_pred CceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence 223556 998 77899999999984 2456699999999999654
No 58
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.33 E-value=8.6e-12 Score=98.58 Aligned_cols=132 Identities=18% Similarity=0.357 Sum_probs=96.4
Q ss_pred cceEEecCCccccccCcccCCcccc-CCCC-----ccccHHHHHHHH--------hCCCEEEEcCCHHhHh---------
Q 030091 44 DNIGFISSKILSFCPKASLRGNLEA-VGVP-----TSVPVRVAHELL--------QAGHRYLDVRTPEEFS--------- 100 (183)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~i~~~~~~~~~--------~~~~~lIDvR~~~e~~--------- 100 (183)
+.+.+++||+..|...+........ .+.. ..++...+..+- ..++..||.|...+|.
T Consensus 115 ~~VslL~GG~~~Wk~~g~~~~s~~~~~p~~~~~~~~~~d~~il~~~edi~~n~~~~~~~~~~DaRs~grF~Gt~p~~~~~ 194 (286)
T KOG1529|consen 115 TKVSLLNGGFRAWKAAGGPVDSSKVETPYSPIVFVASLDNSILATLEDIPFNNLATKNFQYLDARSKGRFDGTEPEPRSG 194 (286)
T ss_pred cEEEEecCcHHHHHHcCCccccccccCCCCCccchhhcchHHHHHHhhccccccccccceeeeccccccccccCCCCccc
Confidence 5678899999999975554433322 1111 222332222221 2348999999999885
Q ss_pred --cCCCCCcEEeccccccC-CCCCCCHHHHHHHhhc--CCCCCeEE-EeCCChHHHHHHHHHHHcCCCCeeEecccHHHH
Q 030091 101 --AGHATGAINVPYMYRVG-SGMTKNLKFVEEVSTR--FRKHDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAW 174 (183)
Q Consensus 101 --~ghIpgAi~ip~~~~~~-~~~~~~~~~~~~~~~~--i~~~~~iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W 174 (183)
.||||||+|+|+..... .++.+.++.+...+.. +..++++| -|+.|..+...+-.|.+.| .++.+|+|++.+|
T Consensus 195 ~~ggHIpGa~n~P~~~~~~~~g~~k~~edl~~~f~~~~l~~~~p~~~sC~~Gisa~~i~~al~r~g-~~~~lYdGS~~Ew 273 (286)
T KOG1529|consen 195 ATGGHIPGAINFPFDEVLDPDGFIKPAEDLKHLFAQKGLKLSKPVIVSCGTGISASIIALALERSG-PDAKLYDGSWTEW 273 (286)
T ss_pred CcCccCCCcccCChHHhcccccccCCHHHHHHHHHhcCcccCCCEEEeeccchhHHHHHHHHHhcC-CCcceecccHHHH
Confidence 68999999999976664 4455556777766553 66788999 9999999999999999999 6799999999999
Q ss_pred Hh
Q 030091 175 RQ 176 (183)
Q Consensus 175 ~~ 176 (183)
..
T Consensus 274 ~~ 275 (286)
T KOG1529|consen 274 AL 275 (286)
T ss_pred hh
Confidence 85
No 59
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.30 E-value=2.2e-11 Score=96.27 Aligned_cols=110 Identities=24% Similarity=0.291 Sum_probs=87.6
Q ss_pred cccHHHHHHHHhC-CCEEEEcC---------CHHhHhcCCCCCcEEecccccc-----CCCCCCCHHHHHHHhhc--CCC
Q 030091 74 SVPVRVAHELLQA-GHRYLDVR---------TPEEFSAGHATGAINVPYMYRV-----GSGMTKNLKFVEEVSTR--FRK 136 (183)
Q Consensus 74 ~i~~~~~~~~~~~-~~~lIDvR---------~~~e~~~ghIpgAi~ip~~~~~-----~~~~~~~~~~~~~~~~~--i~~ 136 (183)
.++++.+.+.+.+ +..|||.- ...||..-|||||+++.++... ..+++..++.+++..+. +++
T Consensus 6 iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lGi~n 85 (286)
T KOG1529|consen 6 IVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLGVDN 85 (286)
T ss_pred ccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcCCCC
Confidence 5677788777765 48999983 3457888999999999985443 34667776766666554 667
Q ss_pred CCeEE-EeC--CChH-HHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCCC
Q 030091 137 HDEII-GCQ--SGKR-SMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 183 (183)
Q Consensus 137 ~~~iv-~C~--~g~~-s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~ 183 (183)
+..+| |.+ .|+. |.+++|.|+-+|+++|.+|+||+.+|+..|+|+++
T Consensus 86 ~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s 136 (286)
T KOG1529|consen 86 GDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDS 136 (286)
T ss_pred CCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCcccc
Confidence 77888 988 6764 67999999999999999999999999999999863
No 60
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=98.64 E-value=8.3e-08 Score=77.15 Aligned_cols=96 Identities=21% Similarity=0.349 Sum_probs=73.5
Q ss_pred CCccccHHHHHHHHhCC-------CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhh-c-CCCCCeEE
Q 030091 71 VPTSVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST-R-FRKHDEII 141 (183)
Q Consensus 71 ~~~~i~~~~~~~~~~~~-------~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~-~-i~~~~~iv 141 (183)
..+.|+++.++.+++.. .+|||+|-+.||..|||-.||||.-. +.+...+- + +.--.-+|
T Consensus 240 s~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~-----------~~l~~~F~hkplThp~aLi 308 (427)
T COG5105 240 SIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISST-----------KKLGLLFRHKPLTHPRALI 308 (427)
T ss_pred chhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchH-----------HHHHHHHHhccccCceeEE
Confidence 34579999999998763 57999999999999999999999874 33333322 2 22234566
Q ss_pred -EeC-CChHHHHHHHHHHHc------------CCCCeeEecccHHHHHhC
Q 030091 142 -GCQ-SGKRSMMAATDLLNA------------GFAGITDIAGGFAAWRQN 177 (183)
Q Consensus 142 -~C~-~g~~s~~aa~~L~~~------------G~~~v~~l~GG~~~W~~~ 177 (183)
+|. +..|+...|.+|+.. -|..||+|+||+.++...
T Consensus 309 fHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~n 358 (427)
T COG5105 309 FHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYSN 358 (427)
T ss_pred EEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhhc
Confidence 998 678999999999863 356699999999987653
No 61
>COG2603 Predicted ATPase [General function prediction only]
Probab=97.44 E-value=0.00026 Score=56.73 Aligned_cols=98 Identities=30% Similarity=0.352 Sum_probs=62.1
Q ss_pred HHHHHHHHhCCCEEEEcCCHHhHhcCCCCCcEEeccccccCC-----CCCC-C-------------HHHHHHH---hhcC
Q 030091 77 VRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGS-----GMTK-N-------------LKFVEEV---STRF 134 (183)
Q Consensus 77 ~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~-----~~~~-~-------------~~~~~~~---~~~i 134 (183)
.+....++.++..+||||.+-||..|+.|+++|+|....... .... . .+....+ ...+
T Consensus 5 ~q~~~~~~~~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f 84 (334)
T COG2603 5 EQDYRALLLADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAF 84 (334)
T ss_pred HHHHHHHHhcCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 345566666778999999999999999999999998422210 0000 0 0000111 1111
Q ss_pred CCCCeEE-EeC-CChHHHHHHHHH-HHcCCCCeeEecccHHHHH
Q 030091 135 RKHDEII-GCQ-SGKRSMMAATDL-LNAGFAGITDIAGGFAAWR 175 (183)
Q Consensus 135 ~~~~~iv-~C~-~g~~s~~aa~~L-~~~G~~~v~~l~GG~~~W~ 175 (183)
--+.++- +|. +|.||...+.+| ...|++-+. +.||+.+..
T Consensus 85 ~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~~~r-~iGGeKalr 127 (334)
T COG2603 85 QEENPVGILCARGGLRSKIVQKWLGYAAGIDYPR-VIGGEKALR 127 (334)
T ss_pred HHhCCcceeeccccchhHHHHHHHHHHHHhhhhh-hhchHHHHH
Confidence 2234444 786 678999999999 777886444 669988754
No 62
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=96.80 E-value=0.0073 Score=41.97 Aligned_cols=75 Identities=16% Similarity=0.191 Sum_probs=38.7
Q ss_pred cccHHHHHHHHhCC-CEEEEcCCHHhHhc-------------CCCCCcEEeccccccCCCCCCCHHHHHHHhhcCC-CCC
Q 030091 74 SVPVRVAHELLQAG-HRYLDVRTPEEFSA-------------GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-KHD 138 (183)
Q Consensus 74 ~i~~~~~~~~~~~~-~~lIDvR~~~e~~~-------------ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~-~~~ 138 (183)
.++++++.++.+.| -.||+.|+..|-.. --+ .-+|+|.. .-..+.+.+..+.+.+. ..+
T Consensus 14 Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl-~y~~iPv~-----~~~~~~~~v~~f~~~l~~~~~ 87 (110)
T PF04273_consen 14 QPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGL-QYVHIPVD-----GGAITEEDVEAFADALESLPK 87 (110)
T ss_dssp S--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT--EEEE---------TTT--HHHHHHHHHHHHTTTT
T ss_pred CCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCC-eEEEeecC-----CCCCCHHHHHHHHHHHHhCCC
Confidence 57889999999998 69999998754210 011 13677763 11233455544443332 245
Q ss_pred eEE-EeCCChHHHHHHH
Q 030091 139 EII-GCQSGKRSMMAAT 154 (183)
Q Consensus 139 ~iv-~C~~g~~s~~aa~ 154 (183)
+|+ ||.+|.|+...+.
T Consensus 88 Pvl~hC~sG~Ra~~l~~ 104 (110)
T PF04273_consen 88 PVLAHCRSGTRASALWA 104 (110)
T ss_dssp SEEEE-SCSHHHHHHHH
T ss_pred CEEEECCCChhHHHHHH
Confidence 888 9999999854443
No 63
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=96.70 E-value=0.0098 Score=42.76 Aligned_cols=84 Identities=19% Similarity=0.169 Sum_probs=49.9
Q ss_pred ccccHHHHHHHHhCC-CEEEEcCCHHhHhcCC----------CCCc--EEeccccccCCCCCCCHHHHHHHhhcCC-CCC
Q 030091 73 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGH----------ATGA--INVPYMYRVGSGMTKNLKFVEEVSTRFR-KHD 138 (183)
Q Consensus 73 ~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~gh----------IpgA--i~ip~~~~~~~~~~~~~~~~~~~~~~i~-~~~ 138 (183)
..++++++..+.+.| -.|||.|+..|-.... -+|- +++|+.. ...+++.+..+...+. .+.
T Consensus 13 ~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~-----~~~~~~~v~~f~~~~~~~~~ 87 (135)
T TIGR01244 13 PQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTA-----GDITPDDVETFRAAIGAAEG 87 (135)
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCC-----CCCCHHHHHHHHHHHHhCCC
Confidence 457788888877777 7999999876643211 1232 5666531 1123444444433332 347
Q ss_pred eEE-EeCCChHHHHHHHHH-HHcCC
Q 030091 139 EII-GCQSGKRSMMAATDL-LNAGF 161 (183)
Q Consensus 139 ~iv-~C~~g~~s~~aa~~L-~~~G~ 161 (183)
+|+ ||.+|.|+..++..+ ...|.
T Consensus 88 pvL~HC~sG~Rt~~l~al~~~~~g~ 112 (135)
T TIGR01244 88 PVLAYCRSGTRSSLLWGFRQAAEGV 112 (135)
T ss_pred CEEEEcCCChHHHHHHHHHHHHcCC
Confidence 888 999999976655433 33454
No 64
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=95.72 E-value=0.0051 Score=53.66 Aligned_cols=93 Identities=18% Similarity=0.160 Sum_probs=62.8
Q ss_pred CCccccHHHHHHHHhCCCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcC-----CCCCeEE-EeC
Q 030091 71 VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-----RKHDEII-GCQ 144 (183)
Q Consensus 71 ~~~~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i-----~~~~~iv-~C~ 144 (183)
..+.++++++..+ ....++|.|...||..+|+++++|+|+. ..+.....+..+ ...+++| +..
T Consensus 620 ~~prmsAedl~~~--~~l~v~d~r~~~ef~r~~~s~s~nip~~---------~~ea~l~~~~~l~~~~~~~~~~~v~~~~ 688 (725)
T KOG1093|consen 620 HCPRISAEDLIWL--KMLYVLDTRQESEFQREHFSDSINIPFN---------NHEADLDWLRFLPGIVCSEGKKCVVVGK 688 (725)
T ss_pred cCccccHHHHHHH--HHHHHHhHHHHHHHHHhhccccccCCcc---------chHHHHHHhhcchHhHHhhCCeEEEecc
Confidence 3456777777666 4578999999999999999999999994 111111112111 1345555 666
Q ss_pred CChHHHHHHHHHHHcCCCCeeEecccHHHH
Q 030091 145 SGKRSMMAATDLLNAGFAGITDIAGGFAAW 174 (183)
Q Consensus 145 ~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W 174 (183)
...-+++....+..+-+.+..++.+|+.+.
T Consensus 689 ~~K~~~e~~~~~~~mk~p~~cil~~~~~~~ 718 (725)
T KOG1093|consen 689 NDKHAAERLTELYVMKVPRICILHDGFNNI 718 (725)
T ss_pred chHHHHHHhhHHHHhcccHHHHHHHHHhhc
Confidence 555566667777666677777888988843
No 65
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=95.65 E-value=0.0012 Score=54.20 Aligned_cols=40 Identities=8% Similarity=-0.067 Sum_probs=34.7
Q ss_pred cccHHHHHHHHhCCCEEEEcCCHHhHhcCCCCCcEEeccc
Q 030091 74 SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113 (183)
Q Consensus 74 ~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAi~ip~~ 113 (183)
.-+++++.+.+.....++|+|....|..+||||++|+|..
T Consensus 15 i~~~~~~~~~l~~~~~~~d~rg~i~~a~egIngtis~~~~ 54 (314)
T PRK00142 15 IEDPEAFRDEHLALCKSLGLKGRILVAEEGINGTVSGTIE 54 (314)
T ss_pred CCCHHHHHHHHHHHHHHcCCeeEEEEcCCCceEEEEecHH
Confidence 3456788888887788999999999999999999999983
No 66
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=94.60 E-value=0.1 Score=44.68 Aligned_cols=83 Identities=16% Similarity=0.223 Sum_probs=49.3
Q ss_pred CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHh--------hcCC-----CCCeEEEeCCChH-----H
Q 030091 88 HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS--------TRFR-----KHDEIIGCQSGKR-----S 149 (183)
Q Consensus 88 ~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~--------~~i~-----~~~~iv~C~~g~~-----s 149 (183)
..|||+|+.++|+.||+-.|.|+.-... +..++.++... +.+. .+..+.+-.+|.. -
T Consensus 327 FFiVDcRpaeqynaGHlstaFhlDc~lm-----lqeP~~Fa~av~sLl~aqrqtie~~s~aggeHlcfmGsGr~EED~Ym 401 (669)
T KOG3636|consen 327 FFIVDCRPAEQYNAGHLSTAFHLDCVLM-----LQEPEKFAIAVNSLLCAQRQTIERDSNAGGEHLCFMGSGRDEEDNYM 401 (669)
T ss_pred EEEEeccchhhcccccchhhhcccHHHH-----hcCHHHHHHHHHHHHHHHHHhhhccccCCcceEEEeccCcchHHHHH
Confidence 7899999999999999999999886321 22222222211 1222 2233334444421 2
Q ss_pred HHHHHHHHHcCCCCeeEecccHHHHH
Q 030091 150 MMAATDLLNAGFAGITDIAGGFAAWR 175 (183)
Q Consensus 150 ~~aa~~L~~~G~~~v~~l~GG~~~W~ 175 (183)
..+...+.+.+-..|..+.||+....
T Consensus 402 nMviA~FlQKnk~yVS~~~GGy~~lh 427 (669)
T KOG3636|consen 402 NMVIAMFLQKNKLYVSFVQGGYKKLH 427 (669)
T ss_pred HHHHHHHHhcCceEEEEecchHHHHH
Confidence 23334444555556889999998765
No 67
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.97 E-value=0.35 Score=34.01 Aligned_cols=81 Identities=19% Similarity=0.139 Sum_probs=52.8
Q ss_pred CCccccHHHHHHHHhCC-CEEEEcCCHHhHh-------------cCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCC-
Q 030091 71 VPTSVPVRVAHELLQAG-HRYLDVRTPEEFS-------------AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR- 135 (183)
Q Consensus 71 ~~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~-------------~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~- 135 (183)
....++++++.++...+ .-||--|+..|=. ..-+. -.+||.. +...+++.++.+...++
T Consensus 12 VsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~-y~~iPV~-----~~~iT~~dV~~f~~Al~e 85 (130)
T COG3453 12 VSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLT-YTHIPVT-----GGGITEADVEAFQRALDE 85 (130)
T ss_pred ecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCc-eEEeecC-----CCCCCHHHHHHHHHHHHH
Confidence 34568889999998888 6789999755432 11122 3456652 33345566666555554
Q ss_pred CCCeEE-EeCCChHHHHHHHHHH
Q 030091 136 KHDEII-GCQSGKRSMMAATDLL 157 (183)
Q Consensus 136 ~~~~iv-~C~~g~~s~~aa~~L~ 157 (183)
-+.+|+ ||.+|.||...+..-.
T Consensus 86 aegPVlayCrsGtRs~~ly~~~~ 108 (130)
T COG3453 86 AEGPVLAYCRSGTRSLNLYGLGE 108 (130)
T ss_pred hCCCEEeeecCCchHHHHHHHHH
Confidence 457899 9999999977665443
No 68
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=93.35 E-value=0.31 Score=40.08 Aligned_cols=92 Identities=15% Similarity=0.081 Sum_probs=55.2
Q ss_pred eEEecCCccccccCcccC-------CccccCCCCccccHHHHHHHHhC-CCEEEEcCCHHhHhc---CCCC-CcEEeccc
Q 030091 46 IGFISSKILSFCPKASLR-------GNLEAVGVPTSVPVRVAHELLQA-GHRYLDVRTPEEFSA---GHAT-GAINVPYM 113 (183)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~-~~~lIDvR~~~e~~~---ghIp-gAi~ip~~ 113 (183)
+..+.||+..|....... .........+.+...++.+.+.+ ++.|||+|+..+|.. |||+ |.. |-.
T Consensus 102 v~~L~GG~~aw~~~~~~~~~~~~~~~~~~vl~g~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~~~~q--psq 179 (311)
T TIGR03167 102 VPRLEGGYKAYRRFVIDQLEELPQPFPLIVLGGMTGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALGLGPQ--PSQ 179 (311)
T ss_pred EEEecChHHHHHHhhhhhhhccCCCCceeccCCCCCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCCCCCC--Cch
Confidence 457889999997521110 11111223455667777777665 489999999999998 8988 431 221
Q ss_pred cccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCC
Q 030091 114 YRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSG 146 (183)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g 146 (183)
......+...+..+++.++|+ -|.+.
T Consensus 180 -------~~fe~~L~~~l~~~~~~~~i~~e~es~ 206 (311)
T TIGR03167 180 -------KRFENALAEALRRLDPGRPIFVEDESR 206 (311)
T ss_pred -------HHHHHHHHHHHHhCCCCceEEEEeCch
Confidence 001233334444567777888 77764
No 69
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=92.38 E-value=0.19 Score=40.18 Aligned_cols=35 Identities=34% Similarity=0.410 Sum_probs=28.5
Q ss_pred cccHHHHHHHHhCC-CEEEEcCCHHhHhcCCCCCcEEecc
Q 030091 74 SVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPY 112 (183)
Q Consensus 74 ~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpgAi~ip~ 112 (183)
.++++++.+.+..+ .+++|+|+ +..||.+|+|+-+
T Consensus 5 ~~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~val 40 (343)
T KOG1717|consen 5 SKSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVAL 40 (343)
T ss_pred HHHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcc
Confidence 45677888887654 89999999 6789999998876
No 70
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=90.66 E-value=0.9 Score=31.98 Aligned_cols=79 Identities=18% Similarity=0.198 Sum_probs=40.3
Q ss_pred HHHHHhCC-CEEEEcCCHHhHhcCCCCC--cEEeccccccCCCCCCCHHHHH----HHhhcCCCCCeEE-EeCCCh-HHH
Q 030091 80 AHELLQAG-HRYLDVRTPEEFSAGHATG--AINVPYMYRVGSGMTKNLKFVE----EVSTRFRKHDEII-GCQSGK-RSM 150 (183)
Q Consensus 80 ~~~~~~~~-~~lIDvR~~~e~~~ghIpg--Ai~ip~~~~~~~~~~~~~~~~~----~~~~~i~~~~~iv-~C~~g~-~s~ 150 (183)
...+...+ ..|||+++..++..-+.+| -.++|+.+.... .....+. .+......+++|+ +|..|. ||.
T Consensus 20 ~~~L~~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~---~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~ 96 (139)
T cd00127 20 KELLKKLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQ---DISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSA 96 (139)
T ss_pred HHHHHHcCCCEEEEcccCCCCcccCCCCceEEEEEceeCCCC---ChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhH
Confidence 33444455 6899999888752222232 356666422211 1112222 2222234456788 999885 766
Q ss_pred H--HHHHHHHcCC
Q 030091 151 M--AATDLLNAGF 161 (183)
Q Consensus 151 ~--aa~~L~~~G~ 161 (183)
. ++..+...|+
T Consensus 97 ~~~~~~l~~~~~~ 109 (139)
T cd00127 97 TLVIAYLMKTLGL 109 (139)
T ss_pred HHHHHHHHHHcCC
Confidence 3 3344444554
No 71
>PLN02727 NAD kinase
Probab=88.99 E-value=2.5 Score=39.66 Aligned_cols=81 Identities=15% Similarity=0.118 Sum_probs=52.2
Q ss_pred CccccHHHHHHHHhCC-CEEEEcCCHHhHhcCCCC------------CcEEeccccccCCCCCCCHHHHHHHhhcC-C-C
Q 030091 72 PTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHAT------------GAINVPYMYRVGSGMTKNLKFVEEVSTRF-R-K 136 (183)
Q Consensus 72 ~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIp------------gAi~ip~~~~~~~~~~~~~~~~~~~~~~i-~-~ 136 (183)
...+++++++++.+.| -.||+.|+..|- .+..+ .-+|+|.. .....+.+.+.++.+.+ + .
T Consensus 266 sgQpspe~la~LA~~GfKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs----~~~apt~EqVe~fa~~l~~sl 340 (986)
T PLN02727 266 GGQVTEEGLKWLLEKGFKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVE----VRTAPSAEQVEKFASLVSDSS 340 (986)
T ss_pred eCCCCHHHHHHHHHCCCeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecC----CCCCCCHHHHHHHHHHHHhhc
Confidence 3468899999988888 689999987762 22210 23677762 12234567777766666 3 3
Q ss_pred CCeEE-EeCCChHHH--HHHHHHH
Q 030091 137 HDEII-GCQSGKRSM--MAATDLL 157 (183)
Q Consensus 137 ~~~iv-~C~~g~~s~--~aa~~L~ 157 (183)
.++|+ ||.+|.+.. .++.++.
T Consensus 341 pkPVLvHCKSGarRAGamvA~yl~ 364 (986)
T PLN02727 341 KKPIYLHSKEGVWRTSAMVSRWKQ 364 (986)
T ss_pred CCCEEEECCCCCchHHHHHHHHHH
Confidence 57899 999998533 3444443
No 72
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=88.52 E-value=2.1 Score=30.20 Aligned_cols=79 Identities=19% Similarity=0.193 Sum_probs=40.6
Q ss_pred HHHHHhCC-CEEEEcCCHHhHh-cCCCCCcEEeccccccCCCCCCCHHHHHHH----hhcCCCCCeEE-EeCCCh-HHHH
Q 030091 80 AHELLQAG-HRYLDVRTPEEFS-AGHATGAINVPYMYRVGSGMTKNLKFVEEV----STRFRKHDEII-GCQSGK-RSMM 151 (183)
Q Consensus 80 ~~~~~~~~-~~lIDvR~~~e~~-~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~----~~~i~~~~~iv-~C~~g~-~s~~ 151 (183)
+..+.+.+ ..||+++...+.. ...+ --+++|..+.. .....+.+... ......+.+|+ +|..|. ||..
T Consensus 19 ~~~l~~~gi~~Vi~l~~~~~~~~~~~~-~~~~ipi~D~~---~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~ 94 (138)
T smart00195 19 LALLKKLGITHVINVTNEVPNLNKKGF-TYLGVPILDNT---ETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSAT 94 (138)
T ss_pred HHHHHHcCCCEEEEccCCCCCCCCCCC-EEEEEECCCCC---CCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHH
Confidence 33444556 6899998765432 1111 23566764311 11112222222 22245667888 999884 7653
Q ss_pred --HHHHHHHcCCC
Q 030091 152 --AATDLLNAGFA 162 (183)
Q Consensus 152 --aa~~L~~~G~~ 162 (183)
+++.+...|++
T Consensus 95 v~~~yl~~~~~~~ 107 (138)
T smart00195 95 LIIAYLMKYRNLS 107 (138)
T ss_pred HHHHHHHHHhCCC
Confidence 44455566764
No 73
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=87.65 E-value=5.3 Score=29.28 Aligned_cols=92 Identities=20% Similarity=0.284 Sum_probs=41.9
Q ss_pred CccccHHHHHHHHhCC-CEEEEcCCHHhHhc---CCCCCc--EEeccccccCC------------------------CCC
Q 030091 72 PTSVPVRVAHELLQAG-HRYLDVRTPEEFSA---GHATGA--INVPYMYRVGS------------------------GMT 121 (183)
Q Consensus 72 ~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~---ghIpgA--i~ip~~~~~~~------------------------~~~ 121 (183)
...++.++...+.+-+ -.|||.|++.|... -.++|. +|+|....... .+.
T Consensus 27 l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~ 106 (164)
T PF13350_consen 27 LSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFYREML 106 (164)
T ss_dssp -TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHHHHHHHHGG
T ss_pred cCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHHHHHHHHHH
Confidence 4567888888777666 79999999999874 344455 45555211111 000
Q ss_pred -CCHHHHHHHhhcC-CCCCeEE-EeCCCh-H-HHHHHHHHHHcCCCC
Q 030091 122 -KNLKFVEEVSTRF-RKHDEII-GCQSGK-R-SMMAATDLLNAGFAG 163 (183)
Q Consensus 122 -~~~~~~~~~~~~i-~~~~~iv-~C~~g~-~-s~~aa~~L~~~G~~~ 163 (183)
.....+..++..+ +...+++ +|..|. | ...++-.|.-+|...
T Consensus 107 ~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll~~lGV~~ 153 (164)
T PF13350_consen 107 ESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLLSLLGVPD 153 (164)
T ss_dssp GSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHHHHTT--H
T ss_pred HhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHHHHcCCCH
Confidence 1123333333332 2336888 999884 4 345666667778753
No 74
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=82.50 E-value=1.1 Score=37.37 Aligned_cols=36 Identities=14% Similarity=-0.003 Sum_probs=28.4
Q ss_pred CCccccHHHHHHHHh-------CCCEEEEcCCHHhHhcCCCCCc
Q 030091 71 VPTSVPVRVAHELLQ-------AGHRYLDVRTPEEFSAGHATGA 107 (183)
Q Consensus 71 ~~~~i~~~~~~~~~~-------~~~~lIDvR~~~e~~~ghIpgA 107 (183)
....++++++.++++ .+.++||||++. |+..++|+.
T Consensus 275 ~~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~g 317 (339)
T PRK07688 275 HKEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKDG 317 (339)
T ss_pred CcCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcCC
Confidence 345788888888772 358999999988 999999854
No 75
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=74.13 E-value=18 Score=30.13 Aligned_cols=89 Identities=17% Similarity=0.177 Sum_probs=57.7
Q ss_pred ccHHHHHHHHhC----C-CEEEEcCCHHhHhcC-CCCCcEEeccccccCCCCCCCHHHHHHHhh-----cCCCCCeEE-E
Q 030091 75 VPVRVAHELLQA----G-HRYLDVRTPEEFSAG-HATGAINVPYMYRVGSGMTKNLKFVEEVST-----RFRKHDEII-G 142 (183)
Q Consensus 75 i~~~~~~~~~~~----~-~~lIDvR~~~e~~~g-hIpgAi~ip~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~iv-~ 142 (183)
++.+++.++++- | -+||.|.+.+|.... .+.|+.-|-.+...-..+..+.+....+.. .++++ .++ +
T Consensus 214 L~~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~~~-~~~~V 292 (338)
T PLN02460 214 LPDLDIKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRSLETFEVDISNTKKLLEGERGEQIREK-GIIVV 292 (338)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHHHhhhccccccCCC-CeEEE
Confidence 344555555532 3 689999999998643 334665555543333444445555555555 45433 355 9
Q ss_pred eCCChHHHHHHHHHHHcCCCCe
Q 030091 143 CQSGKRSMMAATDLLNAGFAGI 164 (183)
Q Consensus 143 C~~g~~s~~aa~~L~~~G~~~v 164 (183)
+.+|..+..-...+...|++-|
T Consensus 293 sESGI~t~~Dv~~l~~~GadAv 314 (338)
T PLN02460 293 GESGLFTPDDVAYVQNAGVKAV 314 (338)
T ss_pred ECCCCCCHHHHHHHHHCCCCEE
Confidence 9999999999999999999754
No 76
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=70.26 E-value=13 Score=25.78 Aligned_cols=79 Identities=14% Similarity=0.182 Sum_probs=38.2
Q ss_pred HhCC-CEEEEcCCHHhH---hcCCCCCcEEeccccccCCCCCCCHHHHHHHhh-cCCCCCeEE-EeCCCh-HHHH--HHH
Q 030091 84 LQAG-HRYLDVRTPEEF---SAGHATGAINVPYMYRVGSGMTKNLKFVEEVST-RFRKHDEII-GCQSGK-RSMM--AAT 154 (183)
Q Consensus 84 ~~~~-~~lIDvR~~~e~---~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~-~i~~~~~iv-~C~~g~-~s~~--aa~ 154 (183)
.+.+ ..||+++...+. ....--.-.++|..+.........-+.....+. ....+.+|+ +|..|. ||.. ++.
T Consensus 15 ~~~~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ay 94 (133)
T PF00782_consen 15 KNLGITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAAY 94 (133)
T ss_dssp HHTTEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHHH
T ss_pred HHCCCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHHHH
Confidence 3445 578999876543 222222335666543111111111122222222 245667788 999874 6553 333
Q ss_pred HHHHcCCC
Q 030091 155 DLLNAGFA 162 (183)
Q Consensus 155 ~L~~~G~~ 162 (183)
.+...|.+
T Consensus 95 Lm~~~~~~ 102 (133)
T PF00782_consen 95 LMKKNGMS 102 (133)
T ss_dssp HHHHHTSS
T ss_pred HHHHcCCC
Confidence 44445653
No 77
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=66.46 E-value=21 Score=32.75 Aligned_cols=88 Identities=19% Similarity=0.235 Sum_probs=59.9
Q ss_pred ccHHHHHHHHhC----C-CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChH
Q 030091 75 VPVRVAHELLQA----G-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKR 148 (183)
Q Consensus 75 i~~~~~~~~~~~----~-~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~ 148 (183)
++.+++.++++. + -.||.|++.+|.+..---|+.-|-.+...-..+..+.+...++...+++ .++ ++.||..
T Consensus 144 L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~--~~~~VsESGI~ 221 (695)
T PRK13802 144 LDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAADLPD--DVIKVAESGVF 221 (695)
T ss_pred cCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhhCCC--CcEEEEcCCCC
Confidence 344555555542 3 6899999999987543346655544433334455566666777777874 345 9999999
Q ss_pred HHHHHHHHHHcCCCCe
Q 030091 149 SMMAATDLLNAGFAGI 164 (183)
Q Consensus 149 s~~aa~~L~~~G~~~v 164 (183)
+..-...|.+.|++-|
T Consensus 222 ~~~d~~~l~~~G~dav 237 (695)
T PRK13802 222 GAVEVEDYARAGADAV 237 (695)
T ss_pred CHHHHHHHHHCCCCEE
Confidence 9888999999999754
No 78
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=66.37 E-value=10 Score=28.41 Aligned_cols=30 Identities=33% Similarity=0.556 Sum_probs=18.4
Q ss_pred cCCCCCeEE-EeCCC-hHHH--HHHHHHHHcCCC
Q 030091 133 RFRKHDEII-GCQSG-KRSM--MAATDLLNAGFA 162 (183)
Q Consensus 133 ~i~~~~~iv-~C~~g-~~s~--~aa~~L~~~G~~ 162 (183)
.+.++++|+ +|..| .||. .+|+.+...|..
T Consensus 101 ~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~ 134 (180)
T COG2453 101 ALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLS 134 (180)
T ss_pred HHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCC
Confidence 356666888 99977 4555 344555554543
No 79
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=65.90 E-value=8.4 Score=29.17 Aligned_cols=35 Identities=31% Similarity=0.529 Sum_probs=27.3
Q ss_pred ccccHHHHHHHHhCCCEEEEcCCHHhHhcCCCCCcEEecc
Q 030091 73 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPY 112 (183)
Q Consensus 73 ~~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAi~ip~ 112 (183)
..|+.+++.+.+..++-||||.++.|=..| -|+||
T Consensus 6 SPin~eEA~eAieGGAdIiDVKNP~EGSLG-----ANFPW 40 (235)
T COG1891 6 SPINREEAIEAIEGGADIIDVKNPAEGSLG-----ANFPW 40 (235)
T ss_pred ccCCHHHHHHHhhCCCceEeccCcccCccc-----CCChH
Confidence 347788999999999999999999873322 37777
No 80
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=65.29 E-value=3.1 Score=33.22 Aligned_cols=90 Identities=23% Similarity=0.242 Sum_probs=55.9
Q ss_pred cccHHHHHHHHh----CC-CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEEEeCCChH
Q 030091 74 SVPVRVAHELLQ----AG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIGCQSGKR 148 (183)
Q Consensus 74 ~i~~~~~~~~~~----~~-~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv~C~~g~~ 148 (183)
.++.+++.++++ =| -.+|.|++.+|....---|+.-|-.+...-..+..+.+...++...++++ .++++.+|..
T Consensus 141 ~L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~tf~vd~~~~~~l~~~ip~~-~~~iseSGI~ 219 (254)
T PF00218_consen 141 ILSDDQLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLKTFEVDLNRTEELAPLIPKD-VIVISESGIK 219 (254)
T ss_dssp GSGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTTTCCBHTHHHHHHHCHSHTT-SEEEEESS-S
T ss_pred hCCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccccCcccChHHHHHHHhhCccc-eeEEeecCCC
Confidence 355666666654 24 68999999999875322244333333222233334445556666677765 3338899999
Q ss_pred HHHHHHHHHHcCCCCe
Q 030091 149 SMMAATDLLNAGFAGI 164 (183)
Q Consensus 149 s~~aa~~L~~~G~~~v 164 (183)
+..-+..|...|++.|
T Consensus 220 ~~~d~~~l~~~G~dav 235 (254)
T PF00218_consen 220 TPEDARRLARAGADAV 235 (254)
T ss_dssp SHHHHHHHCTTT-SEE
T ss_pred CHHHHHHHHHCCCCEE
Confidence 9999999999999854
No 81
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=63.23 E-value=9.2 Score=28.06 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=22.3
Q ss_pred CCCCeEE--EeC----CChHHHHHHHHHHHcCCCCeeEecccHH
Q 030091 135 RKHDEII--GCQ----SGKRSMMAATDLLNAGFAGITDIAGGFA 172 (183)
Q Consensus 135 ~~~~~iv--~C~----~g~~s~~aa~~L~~~G~~~v~~l~GG~~ 172 (183)
+++..++ .|+ .|..-..++..|+++|..+...||||-.
T Consensus 98 ~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgS 141 (170)
T PF09992_consen 98 TADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGS 141 (170)
T ss_dssp -TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG
T ss_pred eCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcc
Confidence 3455555 445 3666778999999999999999999854
No 82
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=63.03 E-value=24 Score=29.50 Aligned_cols=61 Identities=16% Similarity=0.140 Sum_probs=34.6
Q ss_pred eEEecCCccccccCcc-------cCCccccCCCCccccHHHH-HHHHhCCCEEEEcCCHHhHhc---CCCCC
Q 030091 46 IGFISSKILSFCPKAS-------LRGNLEAVGVPTSVPVRVA-HELLQAGHRYLDVRTPEEFSA---GHATG 106 (183)
Q Consensus 46 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~i~~~~~-~~~~~~~~~lIDvR~~~e~~~---ghIpg 106 (183)
...+.||+..|..... ...........+-....++ .++.+.+..+||+|+..+|.. |++++
T Consensus 116 v~~L~GG~~awr~~~~~~~~~~~~~~~~ivl~G~TGsGKT~iL~~L~~~~~~vlDlE~~aehrGS~fG~~~~ 187 (345)
T PRK11784 116 VPRLEGGYKAYRRFVIDTLEEAPAQFPLVVLGGNTGSGKTELLQALANAGAQVLDLEGLANHRGSSFGRLGG 187 (345)
T ss_pred cEEEcCCHHHHHHhhHHHHhhhcccCceEecCCCCcccHHHHHHHHHhcCCeEEECCchhhhccccccCCCC
Confidence 3578899999985111 0111111222222333444 444445688999999999974 44444
No 83
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=62.89 E-value=25 Score=26.00 Aligned_cols=31 Identities=29% Similarity=0.518 Sum_probs=22.7
Q ss_pred CCCCeEE-EeCCC---hHHHHHHHHHHHcCCCCeeE
Q 030091 135 RKHDEII-GCQSG---KRSMMAATDLLNAGFAGITD 166 (183)
Q Consensus 135 ~~~~~iv-~C~~g---~~s~~aa~~L~~~G~~~v~~ 166 (183)
++..+|+ +|..| .++..++++|.+.|++ |.+
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v 57 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTV 57 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEE
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEE
Confidence 6677888 99875 4566789999999996 664
No 84
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=62.33 E-value=64 Score=25.62 Aligned_cols=80 Identities=14% Similarity=0.212 Sum_probs=41.4
Q ss_pred HHHHHHHhCC-CEEEEcCC----HHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhc----CCCCCeEE-EeCCC-
Q 030091 78 RVAHELLQAG-HRYLDVRT----PEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR----FRKHDEII-GCQSG- 146 (183)
Q Consensus 78 ~~~~~~~~~~-~~lIDvR~----~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~----i~~~~~iv-~C~~g- 146 (183)
..+.++...+ ..||++.+ .++|....|. -.++|+.+ +..++.+.+.++... +..+..|+ +|..|
T Consensus 107 ~yl~eLk~~gV~~lVrlcE~~Yd~~~~~~~GI~-~~~lpipD----g~aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AGl 181 (241)
T PTZ00393 107 LYIKEMKNYNVTDLVRTCERTYNDGEITSAGIN-VHELIFPD----GDAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGL 181 (241)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCHHHHHHcCCe-EEEeecCC----CCCCCHHHHHHHHHHHHHHHhcCCeEEEECCCCC
Confidence 3344444555 57777754 2344433332 13455531 222333433333332 44667788 99976
Q ss_pred hHHH-HHHHHHHHcCCC
Q 030091 147 KRSM-MAATDLLNAGFA 162 (183)
Q Consensus 147 ~~s~-~aa~~L~~~G~~ 162 (183)
.|+. .++..|.+.|++
T Consensus 182 GRTGtl~AayLI~~Gms 198 (241)
T PTZ00393 182 GRAPVLASIVLIEFGMD 198 (241)
T ss_pred CHHHHHHHHHHHHcCCC
Confidence 4554 566666667764
No 85
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=59.50 E-value=51 Score=24.34 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=38.0
Q ss_pred HHHHHHHhCC-CEEEEcC----CHHhHhcCCCCCcEEeccccccCCCCCCCH----HHHHHHhh---c-CCCCCeEE-Ee
Q 030091 78 RVAHELLQAG-HRYLDVR----TPEEFSAGHATGAINVPYMYRVGSGMTKNL----KFVEEVST---R-FRKHDEII-GC 143 (183)
Q Consensus 78 ~~~~~~~~~~-~~lIDvR----~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~----~~~~~~~~---~-i~~~~~iv-~C 143 (183)
..++.+.+.+ ..||.+- +++.+...+|. -.++|+.+ +..+.. +++..... . ..++.+|+ +|
T Consensus 31 ~~l~~L~~~gI~~Iv~l~~~~~~~~~~~~~gi~-~~~~p~~D----~~~P~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC 105 (166)
T PTZ00242 31 LYIKELQRYNVTHLVRVCGPTYDAELLEKNGIE-VHDWPFDD----GAPPPKAVIDNWLRLLDQEFAKQSTPPETIAVHC 105 (166)
T ss_pred HHHHHHHhCCCeEEEecCCCCCCHHHHHHCCCE-EEecCCCC----CCCCCHHHHHHHHHHHHHHHHhhccCCCeEEEEC
Confidence 3445555566 5677773 33455555553 24556531 111222 22222221 1 24577888 99
Q ss_pred CCC-hHHHH-HHHHHHHcC
Q 030091 144 QSG-KRSMM-AATDLLNAG 160 (183)
Q Consensus 144 ~~g-~~s~~-aa~~L~~~G 160 (183)
..| .||.. ++..|.+.|
T Consensus 106 ~aGigRSgt~~a~yL~~~~ 124 (166)
T PTZ00242 106 VAGLGRAPILVALALVEYG 124 (166)
T ss_pred CCCCCHHHHHHHHHHHHhC
Confidence 977 46553 344454443
No 86
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=58.12 E-value=42 Score=26.89 Aligned_cols=88 Identities=20% Similarity=0.209 Sum_probs=60.7
Q ss_pred ccHHHHHHHHh----CC-CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEEEeCCChHH
Q 030091 75 VPVRVAHELLQ----AG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIGCQSGKRS 149 (183)
Q Consensus 75 i~~~~~~~~~~----~~-~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv~C~~g~~s 149 (183)
++.++++++.+ -| -+||.|.+.+|.....--|+.-|-.+......+..+.+....+...++++ .+++..||..+
T Consensus 140 L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL~tf~vdl~~t~~la~~~p~~-~~~IsESGI~~ 218 (254)
T COG0134 140 LDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDLTTLEVDLETTEKLAPLIPKD-VILISESGIST 218 (254)
T ss_pred cCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCcchheecHHHHHHHHhhCCCC-cEEEecCCCCC
Confidence 44455555554 24 69999999999876555677666554444445555666666666667766 33388899998
Q ss_pred HHHHHHHHHcCCCC
Q 030091 150 MMAATDLLNAGFAG 163 (183)
Q Consensus 150 ~~aa~~L~~~G~~~ 163 (183)
..-...+...|.+-
T Consensus 219 ~~dv~~l~~~ga~a 232 (254)
T COG0134 219 PEDVRRLAKAGADA 232 (254)
T ss_pred HHHHHHHHHcCCCE
Confidence 88899999999863
No 87
>PRK12361 hypothetical protein; Provisional
Probab=57.36 E-value=26 Score=31.07 Aligned_cols=77 Identities=19% Similarity=0.234 Sum_probs=38.2
Q ss_pred HHHHHHHHhCC-CEEEEcCCHHhHh-cCCCC---CcEEeccccccCCCCCCCHHHHHHHhh----cCCCCCeEE-EeCCC
Q 030091 77 VRVAHELLQAG-HRYLDVRTPEEFS-AGHAT---GAINVPYMYRVGSGMTKNLKFVEEVST----RFRKHDEII-GCQSG 146 (183)
Q Consensus 77 ~~~~~~~~~~~-~~lIDvR~~~e~~-~ghIp---gAi~ip~~~~~~~~~~~~~~~~~~~~~----~i~~~~~iv-~C~~g 146 (183)
+.++..+.+.+ ..|||++.+.+.. ....+ .-.++|..+... ...+.+.+..+ ....+.+|+ +|..|
T Consensus 110 a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~----p~~~~l~~a~~~i~~~~~~~~~VlVHC~~G 185 (547)
T PRK12361 110 PADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSV----PTLAQLNQAINWIHRQVRANKSVVVHCALG 185 (547)
T ss_pred cccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCCC----CcHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 34555555555 6899999532211 11112 235777643221 12233333332 234567788 99977
Q ss_pred -hHHHH-HHHHHH
Q 030091 147 -KRSMM-AATDLL 157 (183)
Q Consensus 147 -~~s~~-aa~~L~ 157 (183)
.||.. ++..|.
T Consensus 186 ~sRSa~vv~ayLm 198 (547)
T PRK12361 186 RGRSVLVLAAYLL 198 (547)
T ss_pred CCcHHHHHHHHHH
Confidence 45653 334443
No 88
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=56.09 E-value=48 Score=26.41 Aligned_cols=87 Identities=18% Similarity=0.163 Sum_probs=56.2
Q ss_pred ccHHHHHHHHhC----C-CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChH
Q 030091 75 VPVRVAHELLQA----G-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKR 148 (183)
Q Consensus 75 i~~~~~~~~~~~----~-~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~ 148 (183)
.+.+++.++++. | -.||.|++.+|.....--|+-.|-.+...-..+..+.+....+...++++ ++ ++.+|..
T Consensus 135 L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~~ip~~--~~~IsESGI~ 212 (247)
T PRK13957 135 LTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAAFLPPN--IVKVGESGIE 212 (247)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCCC--cEEEEcCCCC
Confidence 445556666542 3 68999999999875433455555554343344555666666777778744 45 8899988
Q ss_pred HHHHHHHHHHcCCCCe
Q 030091 149 SMMAATDLLNAGFAGI 164 (183)
Q Consensus 149 s~~aa~~L~~~G~~~v 164 (183)
+..-...++.. ++-|
T Consensus 213 t~~d~~~l~~~-~dav 227 (247)
T PRK13957 213 SRSDLDKFRKL-VDAA 227 (247)
T ss_pred CHHHHHHHHHh-CCEE
Confidence 87777777765 7643
No 89
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=55.40 E-value=24 Score=29.68 Aligned_cols=38 Identities=16% Similarity=0.088 Sum_probs=27.8
Q ss_pred CCCeEEEeCCChHHHHHHHHHHHcCCCCeeEecccHHH
Q 030091 136 KHDEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAA 173 (183)
Q Consensus 136 ~~~~iv~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~ 173 (183)
++++|++...|.....++..|...|..++.++++..-.
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~ 171 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVD 171 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEec
Confidence 34566643555666689999999999999999887433
No 90
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=54.56 E-value=38 Score=25.35 Aligned_cols=83 Identities=19% Similarity=0.280 Sum_probs=34.7
Q ss_pred HHHHHHHhCC-CEEEEcCCHHhHhcCCCCC-----------cEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeC
Q 030091 78 RVAHELLQAG-HRYLDVRTPEEFSAGHATG-----------AINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQ 144 (183)
Q Consensus 78 ~~~~~~~~~~-~~lIDvR~~~e~~~ghIpg-----------Ai~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~ 144 (183)
.++.++.+.+ ..||=.-+..|...-.+|+ -+|+|+.+...+....-.+...++...+..+++|+ +|.
T Consensus 62 ~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L~~g~~V~vHC~ 141 (168)
T PF05706_consen 62 ADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAAAWQILEELAARLENGRKVLVHCR 141 (168)
T ss_dssp HHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HHHHHHHHHHHHHHHHTT--EEEE-S
T ss_pred HHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHHHHHHHHHHHHHHHcCCEEEEECC
Confidence 3455666655 3334455666665433432 24677643222211001122333334456778888 999
Q ss_pred CC-hHHH-HHHHHHHHcC
Q 030091 145 SG-KRSM-MAATDLLNAG 160 (183)
Q Consensus 145 ~g-~~s~-~aa~~L~~~G 160 (183)
+| .|+- .||..|.++|
T Consensus 142 GGlGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 142 GGLGRTGLVAACLLLELG 159 (168)
T ss_dssp SSSSHHHHHHHHHHHHH-
T ss_pred CCCCHHHHHHHHHHHHHc
Confidence 76 4554 5677777766
No 91
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=52.75 E-value=18 Score=28.07 Aligned_cols=56 Identities=18% Similarity=0.310 Sum_probs=34.6
Q ss_pred CCHHHHHHHhhc--CCCCCeEE-E-eCCChHHH--------------------HHHHHHHHcCCCCeeEec-ccHHHHHh
Q 030091 122 KNLKFVEEVSTR--FRKHDEII-G-CQSGKRSM--------------------MAATDLLNAGFAGITDIA-GGFAAWRQ 176 (183)
Q Consensus 122 ~~~~~~~~~~~~--i~~~~~iv-~-C~~g~~s~--------------------~aa~~L~~~G~~~v~~l~-GG~~~W~~ 176 (183)
..+.....+.+. +.+...|+ + |.+|..++ .|-..|..+||.||.+.. .|..+|..
T Consensus 56 s~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~ 135 (209)
T COG2518 56 SAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPE 135 (209)
T ss_pred cCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCC
Confidence 334555555554 34556676 5 44665443 344448889999987554 58888876
Q ss_pred C
Q 030091 177 N 177 (183)
Q Consensus 177 ~ 177 (183)
.
T Consensus 136 ~ 136 (209)
T COG2518 136 E 136 (209)
T ss_pred C
Confidence 4
No 92
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=52.74 E-value=43 Score=25.82 Aligned_cols=36 Identities=25% Similarity=0.469 Sum_probs=25.6
Q ss_pred hhcCCC--CCeEE-EeCC---ChHHHHHHHHHHHcCCCCeeEe
Q 030091 131 STRFRK--HDEII-GCQS---GKRSMMAATDLLNAGFAGITDI 167 (183)
Q Consensus 131 ~~~i~~--~~~iv-~C~~---g~~s~~aa~~L~~~G~~~v~~l 167 (183)
.+..+. ..+|+ +|.. |.....+|++|...||+ |.++
T Consensus 41 ~~~~~~~~~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~-V~v~ 82 (203)
T COG0062 41 LREYPLGRARRVLVLCGPGNNGGDGLVAARHLKAAGYA-VTVL 82 (203)
T ss_pred HHHcCcccCCEEEEEECCCCccHHHHHHHHHHHhCCCc-eEEE
Confidence 344555 45777 9975 46677899999999985 5533
No 93
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=49.09 E-value=35 Score=30.07 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=32.2
Q ss_pred HHhhcCCCCCeEEEeCCChHHHHHHHHHHHcCCCCeeEecccHH
Q 030091 129 EVSTRFRKHDEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 172 (183)
Q Consensus 129 ~~~~~i~~~~~iv~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~ 172 (183)
.++......+.||||++...+...++.|...||. +..+.|++.
T Consensus 266 ~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~-~~~lhG~l~ 308 (513)
T COG0513 266 KLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFK-VAALHGDLP 308 (513)
T ss_pred HHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCe-EEEecCCCC
Confidence 3334344444455999999999999999999985 888888753
No 94
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=47.16 E-value=40 Score=24.82 Aligned_cols=49 Identities=20% Similarity=0.148 Sum_probs=33.9
Q ss_pred HHHHHhhcCCCCCeEE-EeCCC--hHHHHHHHHHHHc---CCCCeeEecccHHHH
Q 030091 126 FVEEVSTRFRKHDEII-GCQSG--KRSMMAATDLLNA---GFAGITDIAGGFAAW 174 (183)
Q Consensus 126 ~~~~~~~~i~~~~~iv-~C~~g--~~s~~aa~~L~~~---G~~~v~~l~GG~~~W 174 (183)
....+...++++..+| .+..| ..|...|..+.+. |..++..+-||-.++
T Consensus 56 E~~~il~~l~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~ 110 (157)
T PRK00103 56 EGERILAALPKGARVIALDERGKQLSSEEFAQELERWRDDGRSDVAFVIGGADGL 110 (157)
T ss_pred HHHHHHhhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCccEEEEEcCcccc
Confidence 3344566677777777 77776 4588888888654 555687788886655
No 95
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=47.16 E-value=38 Score=29.11 Aligned_cols=43 Identities=16% Similarity=0.297 Sum_probs=31.1
Q ss_pred HHhhcCCCCCeEEEeCCChHHHHHHHHHHHcCCCCeeEecccHH
Q 030091 129 EVSTRFRKHDEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 172 (183)
Q Consensus 129 ~~~~~i~~~~~iv~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~ 172 (183)
.++....+.+.||||++-..+..++..|...|+. +..+.|++.
T Consensus 235 ~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~-v~~~hg~~~ 277 (460)
T PRK11776 235 RLLLHHQPESCVVFCNTKKECQEVADALNAQGFS-ALALHGDLE 277 (460)
T ss_pred HHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCc-EEEEeCCCC
Confidence 3333334444455999988888999999999985 777778764
No 96
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=46.94 E-value=61 Score=24.77 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=24.7
Q ss_pred hcCCCCCeEE-EeCC---ChHHHHHHHHHHHcCCCCeeEe
Q 030091 132 TRFRKHDEII-GCQS---GKRSMMAATDLLNAGFAGITDI 167 (183)
Q Consensus 132 ~~i~~~~~iv-~C~~---g~~s~~aa~~L~~~G~~~v~~l 167 (183)
+.+++.++|+ +|.. |.+...++++|...|++ |+++
T Consensus 40 ~~~~~~~~v~vl~G~GNNGGDGlv~AR~L~~~~v~-V~~~ 78 (205)
T TIGR00197 40 QAFPLAGHVIIFCGPGNNGGDGFVVARHLKGFGVE-VFLL 78 (205)
T ss_pred HHcCCCCeEEEEECCCCCccHHHHHHHHHHhCCCE-EEEE
Confidence 3345556787 9974 56777899999887764 6654
No 97
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=45.51 E-value=59 Score=23.87 Aligned_cols=47 Identities=26% Similarity=0.240 Sum_probs=30.3
Q ss_pred HHHhhcCCCCCeEE-EeCCC--hHHHHHHHHHHH---cCCCCeeEecccHHHH
Q 030091 128 EEVSTRFRKHDEII-GCQSG--KRSMMAATDLLN---AGFAGITDIAGGFAAW 174 (183)
Q Consensus 128 ~~~~~~i~~~~~iv-~C~~g--~~s~~aa~~L~~---~G~~~v~~l~GG~~~W 174 (183)
..+...++++..+| .+..| ..|...|..+.+ .|..++..+-||-.++
T Consensus 58 ~~il~~i~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~ 110 (155)
T PF02590_consen 58 ERILKKIPPNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGADGL 110 (155)
T ss_dssp HHHHCTSHTTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB-
T ss_pred HHHHhhccCCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCCCC
Confidence 34566677888888 88777 457788888876 5777788788876544
No 98
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=44.45 E-value=45 Score=28.53 Aligned_cols=44 Identities=14% Similarity=0.262 Sum_probs=34.2
Q ss_pred HHhhcCCCCCeEEEeCCChHHHHHHHHHHHcCCCCeeEecccHHH
Q 030091 129 EVSTRFRKHDEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAA 173 (183)
Q Consensus 129 ~~~~~i~~~~~iv~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~ 173 (183)
.+...+.-...||||..-..+...+..|+..||+ |..|.|-+..
T Consensus 323 ~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~-V~~l~G~l~~ 366 (477)
T KOG0332|consen 323 NLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQ-VSLLHGDLTV 366 (477)
T ss_pred HHHhhhhhhheEEEEeehhhHHHHHHHHHhcCce-eEEeeccchh
Confidence 3444455567788999888888999999999996 8889887643
No 99
>PRK10565 putative carbohydrate kinase; Provisional
Probab=44.09 E-value=61 Score=28.58 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=24.4
Q ss_pred cCCCCCeEE-EeCC---ChHHHHHHHHHHHcCCCCeeEe
Q 030091 133 RFRKHDEII-GCQS---GKRSMMAATDLLNAGFAGITDI 167 (183)
Q Consensus 133 ~i~~~~~iv-~C~~---g~~s~~aa~~L~~~G~~~v~~l 167 (183)
.++...+|+ +|.. |.+...++++|.+.||+ |.++
T Consensus 56 ~~~~~~~v~vl~G~GNNGGDG~v~AR~L~~~G~~-V~v~ 93 (508)
T PRK10565 56 AYPDARHWLVLCGHGNNGGDGYVVARLAQAAGID-VTLL 93 (508)
T ss_pred hcCCCCeEEEEEcCCCchHHHHHHHHHHHHCCCc-eEEE
Confidence 344556677 9874 56677899999999995 6543
No 100
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=43.71 E-value=42 Score=26.62 Aligned_cols=29 Identities=24% Similarity=0.503 Sum_probs=22.5
Q ss_pred CeEE-EeC---CChHHHHHHHHHHHcCCCCeeEe
Q 030091 138 DEII-GCQ---SGKRSMMAATDLLNAGFAGITDI 167 (183)
Q Consensus 138 ~~iv-~C~---~g~~s~~aa~~L~~~G~~~v~~l 167 (183)
++|+ +|. +|.+...+|++|...||+ |.++
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 93 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHFGYE-VTVC 93 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHCCCe-EEEE
Confidence 5677 887 456788899999999995 6544
No 101
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=42.67 E-value=84 Score=27.40 Aligned_cols=87 Identities=17% Similarity=0.127 Sum_probs=54.4
Q ss_pred ccHHHHHHHHhC----C-CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChH
Q 030091 75 VPVRVAHELLQA----G-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKR 148 (183)
Q Consensus 75 i~~~~~~~~~~~----~-~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~ 148 (183)
++.+++.++++. | -.||.|++.+|.+..-=-|+..|-.+...-..+..+.+...++...++++ ++ ++.||..
T Consensus 143 L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~~a~iiGiNnRdL~t~~vd~~~~~~l~~~ip~~--~~~vseSGI~ 220 (454)
T PRK09427 143 LDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIALGAKVIGINNRNLRDLSIDLNRTRELAPLIPAD--VIVISESGIY 220 (454)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCCC--cEEEEeCCCC
Confidence 344455555542 3 68999999999875322255444444333344555666667777778743 45 8889988
Q ss_pred HHHHHHHHHHcCCCCe
Q 030091 149 SMMAATDLLNAGFAGI 164 (183)
Q Consensus 149 s~~aa~~L~~~G~~~v 164 (183)
+..-...|+. |++.|
T Consensus 221 t~~d~~~~~~-~~dav 235 (454)
T PRK09427 221 THAQVRELSP-FANGF 235 (454)
T ss_pred CHHHHHHHHh-cCCEE
Confidence 7766666765 67643
No 102
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=42.52 E-value=80 Score=22.97 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=24.7
Q ss_pred CCCCCeEE-EeC-C-Ch--HHHHHHHHHHHcCCCCeeEecccH
Q 030091 134 FRKHDEII-GCQ-S-GK--RSMMAATDLLNAGFAGITDIAGGF 171 (183)
Q Consensus 134 i~~~~~iv-~C~-~-g~--~s~~aa~~L~~~G~~~v~~l~GG~ 171 (183)
+..+..+| .|. + +. ....+...|++.|.+.+.++-||.
T Consensus 60 ~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGv 102 (143)
T COG2185 60 VEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGGV 102 (143)
T ss_pred HhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecCc
Confidence 44556666 775 2 22 245677788888888887777774
No 103
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=42.33 E-value=63 Score=28.20 Aligned_cols=29 Identities=21% Similarity=0.390 Sum_probs=22.2
Q ss_pred CeEE-EeCC---ChHHHHHHHHHHHcCCCCeeEe
Q 030091 138 DEII-GCQS---GKRSMMAATDLLNAGFAGITDI 167 (183)
Q Consensus 138 ~~iv-~C~~---g~~s~~aa~~L~~~G~~~v~~l 167 (183)
++|+ +|.. |.....+|++|...||+ |.++
T Consensus 60 ~~VlVlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 92 (462)
T PLN03049 60 RRVLALCGPGNNGGDGLVAARHLHHFGYK-PSIC 92 (462)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCc-eEEE
Confidence 5677 9974 46677899999999996 6543
No 104
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=41.81 E-value=60 Score=27.54 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=26.5
Q ss_pred CeEEEeCCChHHHHHHHHHHHcCCCCeeEecccH
Q 030091 138 DEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGF 171 (183)
Q Consensus 138 ~~iv~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~ 171 (183)
+.||||++-..+...+..|...|+. +..+.|++
T Consensus 257 ~~lVF~~t~~~~~~l~~~L~~~g~~-v~~lhg~~ 289 (423)
T PRK04837 257 RAIIFANTKHRCEEIWGHLAADGHR-VGLLTGDV 289 (423)
T ss_pred eEEEEECCHHHHHHHHHHHHhCCCc-EEEecCCC
Confidence 3444999988888999999999985 77787775
No 105
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=39.64 E-value=46 Score=21.63 Aligned_cols=36 Identities=17% Similarity=0.105 Sum_probs=26.2
Q ss_pred CCCeEEEeCCChHHHHHHHHHHHcCCCCeeEecccHHH
Q 030091 136 KHDEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAA 173 (183)
Q Consensus 136 ~~~~iv~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~ 173 (183)
.+.+|++++ ......+...|...+.++|+++ ||...
T Consensus 49 ~~~PIll~~-~~l~~~~~~~l~~~~~~~v~ii-Gg~~~ 84 (92)
T PF04122_consen 49 NNAPILLVN-NSLPSSVKAFLKSLNIKKVYII-GGEGA 84 (92)
T ss_pred cCCeEEEEC-CCCCHHHHHHHHHcCCCEEEEE-CCCCc
Confidence 456788777 4444678888888899889877 76543
No 106
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=38.96 E-value=75 Score=27.00 Aligned_cols=34 Identities=21% Similarity=0.140 Sum_probs=27.5
Q ss_pred CeEE-EeCCChHHHHHHHHHHHcCCCCeeEecccHH
Q 030091 138 DEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFA 172 (183)
Q Consensus 138 ~~iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~ 172 (183)
..++ ||++-..+..++..|...|+. +..+.|++.
T Consensus 246 ~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~l~g~~~ 280 (434)
T PRK11192 246 TRSIVFVRTRERVHELAGWLRKAGIN-CCYLEGEMV 280 (434)
T ss_pred CeEEEEeCChHHHHHHHHHHHhCCCC-EEEecCCCC
Confidence 4455 999988888999999999985 777888763
No 107
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=38.59 E-value=52 Score=28.44 Aligned_cols=43 Identities=26% Similarity=0.214 Sum_probs=27.9
Q ss_pred cCCCCCeEE-EeCCChHHHHHHHHHHHc-----CCCCeeEecccHHHHH
Q 030091 133 RFRKHDEII-GCQSGKRSMMAATDLLNA-----GFAGITDIAGGFAAWR 175 (183)
Q Consensus 133 ~i~~~~~iv-~C~~g~~s~~aa~~L~~~-----G~~~v~~l~GG~~~W~ 175 (183)
..+..-..+ ||++|..+..+|-.|.+. |-..|-.+.|+|.+|.
T Consensus 129 ~~p~~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t 177 (442)
T TIGR03372 129 LTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKS 177 (442)
T ss_pred hCCCCcCEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCC
Confidence 344443456 999999888777666443 5344656778877764
No 108
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=38.44 E-value=63 Score=26.52 Aligned_cols=46 Identities=15% Similarity=0.073 Sum_probs=33.4
Q ss_pred HHHHHhhcCCCCCeEE-EeCCChHHHHHHHHHHHcCCC-CeeEecccH
Q 030091 126 FVEEVSTRFRKHDEII-GCQSGKRSMMAATDLLNAGFA-GITDIAGGF 171 (183)
Q Consensus 126 ~~~~~~~~i~~~~~iv-~C~~g~~s~~aa~~L~~~G~~-~v~~l~GG~ 171 (183)
.+..+...+.++.+++ ||++-..+..++..|++.+.+ ++..+.|++
T Consensus 211 ~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~ 258 (358)
T TIGR01587 211 SLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRF 258 (358)
T ss_pred HHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCC
Confidence 3444444444556666 999988888899999988874 577888875
No 109
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=37.93 E-value=59 Score=28.41 Aligned_cols=44 Identities=18% Similarity=0.207 Sum_probs=29.7
Q ss_pred hcCCCCCeEEEeCCChHHHHHHHHHHHc--CCCCeeEecccHHHHH
Q 030091 132 TRFRKHDEIIGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 175 (183)
Q Consensus 132 ~~i~~~~~iv~C~~g~~s~~aa~~L~~~--G~~~v~~l~GG~~~W~ 175 (183)
+.++.-..+.||++|..+..+|-.|.+. |-++|-.+.|++.+|.
T Consensus 150 ~~~p~~~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~ 195 (474)
T PLN02482 150 DAVPSVEMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHA 195 (474)
T ss_pred HhCCCCCEEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCc
Confidence 3344433333999999988877777553 5445666788888876
No 110
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=37.90 E-value=79 Score=28.26 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=22.1
Q ss_pred CeEE-EeCC---ChHHHHHHHHHHHcCCCCeeEe
Q 030091 138 DEII-GCQS---GKRSMMAATDLLNAGFAGITDI 167 (183)
Q Consensus 138 ~~iv-~C~~---g~~s~~aa~~L~~~G~~~v~~l 167 (183)
++|+ +|.. |.....+|++|...||+ |.++
T Consensus 136 ~~VlVlcGpGNNGGDGLVaAR~L~~~G~~-V~V~ 168 (544)
T PLN02918 136 SRVLAICGPGNNGGDGLVAARHLHHFGYK-PFVC 168 (544)
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCc-eEEE
Confidence 5677 9974 45677899999999996 6544
No 111
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=36.92 E-value=82 Score=25.26 Aligned_cols=45 Identities=16% Similarity=0.226 Sum_probs=37.2
Q ss_pred CCCHHHHHHHhhcCCCCCeEE-EeCCChHHHHHHHHHHHcCCCCee
Q 030091 121 TKNLKFVEEVSTRFRKHDEII-GCQSGKRSMMAATDLLNAGFAGIT 165 (183)
Q Consensus 121 ~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s~~aa~~L~~~G~~~v~ 165 (183)
....+.++.....+.++..++ ||..-....+....|++.||.++.
T Consensus 172 p~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie 217 (256)
T COG2519 172 PDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIE 217 (256)
T ss_pred CChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchh
Confidence 345677777777888888999 999888888999999999997754
No 112
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=36.60 E-value=1.2e+02 Score=22.35 Aligned_cols=49 Identities=22% Similarity=0.108 Sum_probs=32.7
Q ss_pred HHHHHHhhcCCCCCeEE-EeCCC--hHHHHHHHHHHH---cCCCCeeEecccHHHH
Q 030091 125 KFVEEVSTRFRKHDEII-GCQSG--KRSMMAATDLLN---AGFAGITDIAGGFAAW 174 (183)
Q Consensus 125 ~~~~~~~~~i~~~~~iv-~C~~g--~~s~~aa~~L~~---~G~~~v~~l~GG~~~W 174 (183)
..-..+...++++..+| ..-.| ..|...|..|.. .| .++..+-||-.+.
T Consensus 55 ~E~~~il~~i~~~~~vi~Ld~~Gk~~sSe~fA~~l~~~~~~G-~~i~f~IGG~~Gl 109 (155)
T COG1576 55 KEGEAILAAIPKGSYVVLLDIRGKALSSEEFADFLERLRDDG-RDISFLIGGADGL 109 (155)
T ss_pred HHHHHHHHhcCCCCeEEEEecCCCcCChHHHHHHHHHHHhcC-CeEEEEEeCcccC
Confidence 34445667788888888 55455 457777777654 47 6787778886554
No 113
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=36.22 E-value=94 Score=22.04 Aligned_cols=22 Identities=27% Similarity=0.191 Sum_probs=12.4
Q ss_pred HHHHHHh-CCCEEEEcC---CHHhHh
Q 030091 79 VAHELLQ-AGHRYLDVR---TPEEFS 100 (183)
Q Consensus 79 ~~~~~~~-~~~~lIDvR---~~~e~~ 100 (183)
.+...+. .++.+||.- ++++|.
T Consensus 21 iv~~~l~~~GfeVi~lg~~~s~e~~v 46 (132)
T TIGR00640 21 VIATAYADLGFDVDVGPLFQTPEEIA 46 (132)
T ss_pred HHHHHHHhCCcEEEECCCCCCHHHHH
Confidence 3444444 458888874 455553
No 114
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=35.92 E-value=1.1e+02 Score=24.44 Aligned_cols=76 Identities=17% Similarity=0.166 Sum_probs=41.5
Q ss_pred CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEEEeCCChHHHHHHHHHHHcCCCCe
Q 030091 88 HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIGCQSGKRSMMAATDLLNAGFAGI 164 (183)
Q Consensus 88 ~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv~C~~g~~s~~aa~~L~~~G~~~v 164 (183)
.+++|+.+.+|.....=-|+-.|-.+......+..+.+...++...++.+ .++++-+|..+..-+..+...|++-|
T Consensus 162 ~~lvevh~~~E~~~A~~~gadiIgin~rdl~~~~~d~~~~~~l~~~~p~~-~~vIaegGI~t~ed~~~~~~~Gad~v 237 (260)
T PRK00278 162 DVLVEVHDEEELERALKLGAPLIGINNRNLKTFEVDLETTERLAPLIPSD-RLVVSESGIFTPEDLKRLAKAGADAV 237 (260)
T ss_pred eEEEEeCCHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHhCCCC-CEEEEEeCCCCHHHHHHHHHcCCCEE
Confidence 67888888876643211133222221111112223345555555556432 23377788877777888888999754
No 115
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=35.79 E-value=58 Score=27.34 Aligned_cols=37 Identities=19% Similarity=0.346 Sum_probs=29.0
Q ss_pred HHhhcCCCCCeEEEeCCChHHHHHHHHHHHcCCCCeeE
Q 030091 129 EVSTRFRKHDEIIGCQSGKRSMMAATDLLNAGFAGITD 166 (183)
Q Consensus 129 ~~~~~i~~~~~iv~C~~g~~s~~aa~~L~~~G~~~v~~ 166 (183)
.++.++.-+..||||++-.|....|....++||. +|+
T Consensus 315 tLfskLqINQsIIFCNS~~rVELLAkKITelGys-cyy 351 (459)
T KOG0326|consen 315 TLFSKLQINQSIIFCNSTNRVELLAKKITELGYS-CYY 351 (459)
T ss_pred HHHHHhcccceEEEeccchHhHHHHHHHHhccch-hhH
Confidence 3445556677788999999999999999999985 443
No 116
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=35.79 E-value=71 Score=27.50 Aligned_cols=38 Identities=18% Similarity=0.280 Sum_probs=26.4
Q ss_pred eEEEeCCChHHHHHHHHHHHc--CCCCeeEecccHHHHHh
Q 030091 139 EIIGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWRQ 176 (183)
Q Consensus 139 ~iv~C~~g~~s~~aa~~L~~~--G~~~v~~l~GG~~~W~~ 176 (183)
.+.||++|..+..+|-.|.+. |-..|-.+.||+.+|..
T Consensus 117 ~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ 156 (451)
T PRK06918 117 KVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTL 156 (451)
T ss_pred EEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccch
Confidence 444999999988777766543 43446667788887753
No 117
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=35.78 E-value=44 Score=22.94 Aligned_cols=31 Identities=10% Similarity=0.169 Sum_probs=23.5
Q ss_pred CeEEEeCCChHHHHHHHHHHHcCCCCeeEec
Q 030091 138 DEIIGCQSGKRSMMAATDLLNAGFAGITDIA 168 (183)
Q Consensus 138 ~~iv~C~~g~~s~~aa~~L~~~G~~~v~~l~ 168 (183)
++|++.++|.-+.++.+.++++|++-|.++.
T Consensus 3 kkvLIanrGeia~r~~ra~r~~Gi~tv~v~s 33 (110)
T PF00289_consen 3 KKVLIANRGEIAVRIIRALRELGIETVAVNS 33 (110)
T ss_dssp SEEEESS-HHHHHHHHHHHHHTTSEEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCcceeccC
Confidence 3455778888889999999999998665543
No 118
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=35.76 E-value=86 Score=22.02 Aligned_cols=34 Identities=18% Similarity=0.152 Sum_probs=24.6
Q ss_pred CCeEEEeCCChHHHHHHHHHHHcCCCCeeEeccc
Q 030091 137 HDEIIGCQSGKRSMMAATDLLNAGFAGITDIAGG 170 (183)
Q Consensus 137 ~~~iv~C~~g~~s~~aa~~L~~~G~~~v~~l~GG 170 (183)
++++++-..|..+..++..|...|+++++++.=-
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 4566644456677788899999999888876533
No 119
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=35.56 E-value=84 Score=28.14 Aligned_cols=35 Identities=11% Similarity=0.120 Sum_probs=27.7
Q ss_pred CCeEE-EeCCChHHHHHHHHHHHcCCCCeeEecccHH
Q 030091 137 HDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFA 172 (183)
Q Consensus 137 ~~~iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~ 172 (183)
...++ ||++-..+..++..|...|+. +..+.|++.
T Consensus 257 ~~k~LVF~nt~~~ae~l~~~L~~~g~~-v~~lhg~l~ 292 (572)
T PRK04537 257 GARTMVFVNTKAFVERVARTLERHGYR-VGVLSGDVP 292 (572)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHcCCC-EEEEeCCCC
Confidence 34455 999988888999999999985 777877743
No 120
>PRK06148 hypothetical protein; Provisional
Probab=35.25 E-value=59 Score=31.32 Aligned_cols=46 Identities=13% Similarity=0.072 Sum_probs=32.0
Q ss_pred hhcCCCCCeEE-EeCCChHHHHHHHHHHHc--CCCCeeEecccHHHHHh
Q 030091 131 STRFRKHDEII-GCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWRQ 176 (183)
Q Consensus 131 ~~~i~~~~~iv-~C~~g~~s~~aa~~L~~~--G~~~v~~l~GG~~~W~~ 176 (183)
.+.++.+-..| ||++|..+..+|-.|.+. |-++|-.+.|||.+|..
T Consensus 673 ~~~~p~~~~~v~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~ 721 (1013)
T PRK06148 673 TATLPDGLTVAFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTT 721 (1013)
T ss_pred HHhCCCCcCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCc
Confidence 33355443456 999999988877777554 55557678898888854
No 121
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=34.71 E-value=59 Score=22.70 Aligned_cols=40 Identities=15% Similarity=0.170 Sum_probs=29.2
Q ss_pred CCeEEEeCCChHHHHHHHHHHHcCCCCeeEecccHHHHHh
Q 030091 137 HDEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ 176 (183)
Q Consensus 137 ~~~iv~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~ 176 (183)
+.+|+.+..|.-...++..|...|..++.++|+..-.+..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~n 41 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSN 41 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGG
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecc
Confidence 3556677777777799999999999989888876544433
No 122
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.25 E-value=93 Score=26.91 Aligned_cols=36 Identities=33% Similarity=0.430 Sum_probs=28.0
Q ss_pred CCCe-EEEeCCChHHHHHHHHHHHcCCCCeeEecccHH
Q 030091 136 KHDE-IIGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 172 (183)
Q Consensus 136 ~~~~-iv~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~ 172 (183)
+++. ||||++-..+..++..|...|+. +..|.||+.
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~-~~~~H~~l~ 261 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIA-AGAYHAGLE 261 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCC-eeEeeCCCC
Confidence 3445 55999988888999999999985 666777753
No 123
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=33.70 E-value=86 Score=26.99 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=30.2
Q ss_pred HHhhcCCCCCeEEEeCCChHHHHHHHHHHHcCCCCeeEecccHH
Q 030091 129 EVSTRFRKHDEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 172 (183)
Q Consensus 129 ~~~~~i~~~~~iv~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~ 172 (183)
.++.+...+.-||||+.+..+...+-.|+..||..+ -|.|-+.
T Consensus 293 ~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~-~LhGqms 335 (476)
T KOG0330|consen 293 YLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAI-PLHGQMS 335 (476)
T ss_pred HHHHhhcCCcEEEEEeccchHHHHHHHHHhcCccee-cccchhh
Confidence 334444444444499999999999999999999643 4666554
No 124
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=33.12 E-value=1e+02 Score=26.56 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=26.7
Q ss_pred CeEE-EeCCChHHHHHHHHHHHcCCCCeeEecccHH
Q 030091 138 DEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFA 172 (183)
Q Consensus 138 ~~iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~ 172 (183)
..++ ||++-..+..++..|...|+. +..+.|++.
T Consensus 246 ~~~lVF~~t~~~~~~l~~~L~~~g~~-~~~lhg~~~ 280 (456)
T PRK10590 246 QQVLVFTRTKHGANHLAEQLNKDGIR-SAAIHGNKS 280 (456)
T ss_pred CcEEEEcCcHHHHHHHHHHHHHCCCC-EEEEECCCC
Confidence 3455 999988888999999999985 666777753
No 125
>PF11181 YflT: Heat induced stress protein YflT
Probab=32.70 E-value=76 Score=21.28 Aligned_cols=29 Identities=21% Similarity=0.365 Sum_probs=15.9
Q ss_pred EE-EeCCChHHHHHHHHHHHcCCC--CeeEec
Q 030091 140 II-GCQSGKRSMMAATDLLNAGFA--GITDIA 168 (183)
Q Consensus 140 iv-~C~~g~~s~~aa~~L~~~G~~--~v~~l~ 168 (183)
+| ...+...+..+...|+..||. +++++.
T Consensus 2 ~Igv~~~~~E~~~~I~~L~~~Gy~~ddI~Vva 33 (103)
T PF11181_consen 2 VIGVYDNEEEALSAIEELKAQGYSEDDIYVVA 33 (103)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCcccEEEEE
Confidence 44 445555555666666666663 355443
No 126
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=31.49 E-value=72 Score=21.21 Aligned_cols=37 Identities=19% Similarity=0.378 Sum_probs=23.4
Q ss_pred CCeEE-EeCCChHHHHHHHHHH----HcCCCCeeEecccHHHH
Q 030091 137 HDEII-GCQSGKRSMMAATDLL----NAGFAGITDIAGGFAAW 174 (183)
Q Consensus 137 ~~~iv-~C~~g~~s~~aa~~L~----~~G~~~v~~l~GG~~~W 174 (183)
.++|+ .|.+|..+..++..++ +.|++ +.+-..++...
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~-~~v~a~~~~~~ 44 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVP-VKIAAGSYGAA 44 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCc-EEEEEecHHHH
Confidence 35788 9999987766555544 45774 55555555443
No 127
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=31.28 E-value=81 Score=26.88 Aligned_cols=47 Identities=15% Similarity=0.071 Sum_probs=30.0
Q ss_pred HhhcCCCCCeEE-EeCCChHHHHHHHHHHHc--CCCCeeEecccHHHHHh
Q 030091 130 VSTRFRKHDEII-GCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWRQ 176 (183)
Q Consensus 130 ~~~~i~~~~~iv-~C~~g~~s~~aa~~L~~~--G~~~v~~l~GG~~~W~~ 176 (183)
+.+..++...-| ||++|..+..++-.+.+. |-+.+..++|++.+|..
T Consensus 95 L~~~~~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ 144 (433)
T PRK08117 95 LAEITPGGLDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTL 144 (433)
T ss_pred HHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCH
Confidence 333344433445 999998888777666443 54556677888877753
No 128
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=30.97 E-value=89 Score=26.90 Aligned_cols=37 Identities=14% Similarity=0.084 Sum_probs=25.8
Q ss_pred eEEEeCCChHHHHHHHHHHHc--CCCCeeEecccHHHHH
Q 030091 139 EIIGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 175 (183)
Q Consensus 139 ~iv~C~~g~~s~~aa~~L~~~--G~~~v~~l~GG~~~W~ 175 (183)
++.||++|..+..+|-.|.+. |-+.|-.++|++.+|.
T Consensus 105 ~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t 143 (445)
T PRK08593 105 RVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGST 143 (445)
T ss_pred EEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCc
Confidence 444999999888777666443 5444666788888774
No 129
>PRK07678 aminotransferase; Validated
Probab=30.78 E-value=88 Score=26.98 Aligned_cols=47 Identities=11% Similarity=0.019 Sum_probs=27.9
Q ss_pred HhhcCCCCCeEEEeCCChHHHHHHHHHHHc-----C---CCCeeEecccHHHHHh
Q 030091 130 VSTRFRKHDEIIGCQSGKRSMMAATDLLNA-----G---FAGITDIAGGFAAWRQ 176 (183)
Q Consensus 130 ~~~~i~~~~~iv~C~~g~~s~~aa~~L~~~-----G---~~~v~~l~GG~~~W~~ 176 (183)
+.+.++....+.||++|..+..+|-.+.+. | -+.|-.+.|||.+|..
T Consensus 98 l~~~~~~~~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~ 152 (451)
T PRK07678 98 LNEWLGGEYVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSM 152 (451)
T ss_pred HHHhCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccH
Confidence 333344433333999998877766555432 3 2335567788887753
No 130
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=30.26 E-value=1.1e+02 Score=27.54 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=27.2
Q ss_pred CeEEEeCCChHHHHHHHHHHHcCCCCeeEecccHH
Q 030091 138 DEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 172 (183)
Q Consensus 138 ~~iv~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~ 172 (183)
+.||||++-..+..++..|...|+. +..+.||+.
T Consensus 238 ~~IIFc~tr~~~e~la~~L~~~g~~-v~~~Ha~l~ 271 (607)
T PRK11057 238 SGIIYCNSRAKVEDTAARLQSRGIS-AAAYHAGLD 271 (607)
T ss_pred CEEEEECcHHHHHHHHHHHHhCCCC-EEEecCCCC
Confidence 4444999988888999999999985 767778763
No 131
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=29.69 E-value=77 Score=26.04 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=21.4
Q ss_pred eCCChH--HHHHHHHHHHcCCCCeeEecccHHHHHhC
Q 030091 143 CQSGKR--SMMAATDLLNAGFAGITDIAGGFAAWRQN 177 (183)
Q Consensus 143 C~~g~~--s~~aa~~L~~~G~~~v~~l~GG~~~W~~~ 177 (183)
|..|.+ +....+.|++.|++ +..+.-|-.+|...
T Consensus 122 cavGK~tTal~L~~~l~~~G~~-a~fvaTGQTGimia 157 (301)
T PF07755_consen 122 CAVGKMTTALELRRALRERGIN-AGFVATGQTGIMIA 157 (301)
T ss_dssp SSSSHHHHHHHHHHHHHHTT---EEEEE-SHHHHHCH
T ss_pred ccccHHHHHHHHHHHHHHcCCC-ceEEecCCceEEEe
Confidence 445665 44677889999996 55566677777653
No 132
>PTZ00424 helicase 45; Provisional
Probab=29.60 E-value=1.3e+02 Score=24.93 Aligned_cols=37 Identities=14% Similarity=0.328 Sum_probs=27.6
Q ss_pred CCCCeEEEeCCChHHHHHHHHHHHcCCCCeeEecccHH
Q 030091 135 RKHDEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 172 (183)
Q Consensus 135 ~~~~~iv~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~ 172 (183)
...+.||||++-..+...+..|...|+. +..+.|++.
T Consensus 266 ~~~~~ivF~~t~~~~~~l~~~l~~~~~~-~~~~h~~~~ 302 (401)
T PTZ00424 266 TITQAIIYCNTRRKVDYLTKKMHERDFT-VSCMHGDMD 302 (401)
T ss_pred CCCeEEEEecCcHHHHHHHHHHHHCCCc-EEEEeCCCC
Confidence 3334444999888888899999999884 777778763
No 133
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=29.60 E-value=1.2e+02 Score=26.25 Aligned_cols=33 Identities=9% Similarity=0.217 Sum_probs=26.3
Q ss_pred eEE-EeCCChHHHHHHHHHHHcCCCCeeEecccHH
Q 030091 139 EII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFA 172 (183)
Q Consensus 139 ~iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~ 172 (183)
.++ ||++-..+...+..|...|+. +..+.|++.
T Consensus 337 ~~IVF~~s~~~~~~l~~~L~~~~~~-~~~~~g~~~ 370 (475)
T PRK01297 337 RVMVFANRKDEVRRIEERLVKDGIN-AAQLSGDVP 370 (475)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCC-EEEEECCCC
Confidence 455 999988888899999999985 666777754
No 134
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=29.37 E-value=1.2e+02 Score=27.62 Aligned_cols=36 Identities=17% Similarity=0.258 Sum_probs=27.8
Q ss_pred CCCCeEEEeCCChHHHHHHHHHHHcCCCCeeEecccH
Q 030091 135 RKHDEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGF 171 (183)
Q Consensus 135 ~~~~~iv~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~ 171 (183)
+....||||++-..+..++..|...||. +..+.|.+
T Consensus 244 ~~~~~IVF~~tk~~a~~l~~~L~~~g~~-~~~lhgd~ 279 (629)
T PRK11634 244 DFDAAIIFVRTKNATLEVAEALERNGYN-SAALNGDM 279 (629)
T ss_pred CCCCEEEEeccHHHHHHHHHHHHhCCCC-EEEeeCCC
Confidence 3344455999988888999999999995 66777764
No 135
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=29.37 E-value=1.2e+02 Score=27.09 Aligned_cols=35 Identities=23% Similarity=0.244 Sum_probs=26.8
Q ss_pred CCeEEEeCCChHHHHHHHHHHHcCCCCeeEecccHH
Q 030091 137 HDEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 172 (183)
Q Consensus 137 ~~~iv~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~ 172 (183)
.+.||||++-..+..++..|...|+. +..+.||+.
T Consensus 225 ~~~IIf~~sr~~~e~la~~L~~~g~~-~~~~H~~l~ 259 (591)
T TIGR01389 225 QSGIIYASSRKKVEELAERLESQGIS-ALAYHAGLS 259 (591)
T ss_pred CCEEEEECcHHHHHHHHHHHHhCCCC-EEEEECCCC
Confidence 34444999988888999999999985 666777753
No 136
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=28.89 E-value=1.2e+02 Score=27.18 Aligned_cols=35 Identities=29% Similarity=0.323 Sum_probs=28.3
Q ss_pred CCeEE-EeCCChHHHHHHHHHHHcCCCCeeEecccHH
Q 030091 137 HDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFA 172 (183)
Q Consensus 137 ~~~iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~ 172 (183)
+.+|| |.+.-..+..+|..|..+|| +++.|.||-.
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~g~-~~~tlHg~k~ 552 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKAGY-KVTTLHGGKS 552 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhccc-eEEEeeCCcc
Confidence 56777 88876667789999999999 4888998853
No 137
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=28.49 E-value=1.5e+02 Score=23.38 Aligned_cols=42 Identities=19% Similarity=0.181 Sum_probs=24.8
Q ss_pred HHHHHhhcCC---CCCeEE-EeCCChH-HHHHH----HHHHHcCCCCeeEe
Q 030091 126 FVEEVSTRFR---KHDEII-GCQSGKR-SMMAA----TDLLNAGFAGITDI 167 (183)
Q Consensus 126 ~~~~~~~~i~---~~~~iv-~C~~g~~-s~~aa----~~L~~~G~~~v~~l 167 (183)
.+..+.+.++ ++..+| .|.+... |..++ ..|...||++|++-
T Consensus 123 ~v~aik~~~ppl~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v~ 173 (265)
T COG4822 123 CVEAIKDQIPPLNKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFVA 173 (265)
T ss_pred HHHHHHHhcCCcCcCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEEE
Confidence 4444555565 667778 8875432 22222 34567899998743
No 138
>KOG4284 consensus DEAD box protein [Transcription]
Probab=28.40 E-value=34 Score=31.46 Aligned_cols=46 Identities=22% Similarity=0.286 Sum_probs=37.1
Q ss_pred HHHHHhhcCCCCCeEEEeCCChHHHHHHHHHHHcCCCCeeEecccHH
Q 030091 126 FVEEVSTRFRKHDEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 172 (183)
Q Consensus 126 ~~~~~~~~i~~~~~iv~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~ 172 (183)
.+..++..|+-...+|||+.-.|+.-.+..|...|++ +..+.|.+.
T Consensus 262 ~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d-~~~ISgaM~ 307 (980)
T KOG4284|consen 262 KLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLD-VTFISGAMS 307 (980)
T ss_pred HHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCC-eEEeccccc
Confidence 3445566677778888999999999999999999997 777777664
No 139
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=28.35 E-value=56 Score=29.50 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=27.3
Q ss_pred eEEEeCCChHHHHHHHHHHHcCCCCeeEecccHH
Q 030091 139 EIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFA 172 (183)
Q Consensus 139 ~iv~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~ 172 (183)
-||||.+-..+...+.+|...|+. +..|.||+.
T Consensus 233 GIIYc~sRk~~E~ia~~L~~~g~~-a~~YHaGl~ 265 (590)
T COG0514 233 GIIYCLTRKKVEELAEWLRKNGIS-AGAYHAGLS 265 (590)
T ss_pred eEEEEeeHHhHHHHHHHHHHCCCc-eEEecCCCC
Confidence 355999988889999999999985 666778874
No 140
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=28.33 E-value=94 Score=26.92 Aligned_cols=45 Identities=11% Similarity=-0.006 Sum_probs=28.6
Q ss_pred hhcCCCCCeEE-EeCCChHHHHHHHHHHHc--CCCCeeEecccHHHHH
Q 030091 131 STRFRKHDEII-GCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 175 (183)
Q Consensus 131 ~~~i~~~~~iv-~C~~g~~s~~aa~~L~~~--G~~~v~~l~GG~~~W~ 175 (183)
.+.++....-| ||++|..+..+|-.|.+. |-+.|-...||+.+|.
T Consensus 106 ~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t 153 (457)
T PRK05639 106 AEISPIENPKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQT 153 (457)
T ss_pred HhhCCCCcCEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCcc
Confidence 33344332345 999999888877777553 4334556678887775
No 141
>PF05586 Ant_C: Anthrax receptor C-terminus region; InterPro: IPR008399 Anthrax is an acute disease in humans and animals caused by the bacterium Bacillus anthracis, which can be lethal. There are effective vaccines against anthrax, and some forms of the disease respond well to antibiotic treatment. The anthrax bacillus is one of only a few that can form long-lived spores. The anthrax toxin consists of the proteins protective antigen (PA) lethal factor (LF) and oedema factor (EF). The first step of toxin entry into host cells is the recognition by PA of a receptor on the surface of the target cell. The subsequent cleavage of receptor-bound PA enables EF and LF to bind and form a heptameric PA63 pre-pore, which triggers endocytosis. PA has been shown to bind to two cellular receptors: anthrax toxin receptor/tumour endothelial marker 8 and capillary morphogenesis protein 2 (CMG2), which are closely related host cell receptors. Both bind to PA with high affinity and are capable of mediating toxicity [, ], and both are type 1 membrane proteins that include an approximately 200-aa extracellular von Willebrand factor A (VWA) domain with a metal ion-dependent adhesion site (MIDAS) motif []. This region is found in the putatively cytoplasmic C terminus of the anthrax receptor.; GO: 0004872 receptor activity, 0016021 integral to membrane
Probab=28.05 E-value=53 Score=21.82 Aligned_cols=18 Identities=17% Similarity=0.139 Sum_probs=15.3
Q ss_pred HHHHHHHHcCCCCeeEec
Q 030091 151 MAATDLLNAGFAGITDIA 168 (183)
Q Consensus 151 ~aa~~L~~~G~~~v~~l~ 168 (183)
.|.|.|.+.||++|.++.
T Consensus 61 DALwaLlRr~YDrVSlMR 78 (95)
T PF05586_consen 61 DALWALLRRQYDRVSLMR 78 (95)
T ss_pred HHHHHHHHhccceeeeec
Confidence 578889999999998774
No 142
>PRK06917 hypothetical protein; Provisional
Probab=27.89 E-value=1.1e+02 Score=26.37 Aligned_cols=47 Identities=13% Similarity=-0.012 Sum_probs=29.4
Q ss_pred HHhhcCCCCCeEE-EeCCChHHHHHHHHHHH-----cCCC---CeeEecccHHHHH
Q 030091 129 EVSTRFRKHDEII-GCQSGKRSMMAATDLLN-----AGFA---GITDIAGGFAAWR 175 (183)
Q Consensus 129 ~~~~~i~~~~~iv-~C~~g~~s~~aa~~L~~-----~G~~---~v~~l~GG~~~W~ 175 (183)
.+.+.++.....+ ||++|..+..+|-.|.+ .|++ .|-.+.||+.+|.
T Consensus 82 ~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t 137 (447)
T PRK06917 82 KLSDLSPGDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGIT 137 (447)
T ss_pred HHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCcc
Confidence 3334455443356 99999988877766653 2442 3556778888775
No 143
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=27.43 E-value=1e+02 Score=21.41 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=17.0
Q ss_pred eEE-EeCC-ChHHHHHHHHHHHcCCCCeeEecccH
Q 030091 139 EII-GCQS-GKRSMMAATDLLNAGFAGITDIAGGF 171 (183)
Q Consensus 139 ~iv-~C~~-g~~s~~aa~~L~~~G~~~v~~l~GG~ 171 (183)
+|+ +|.+ -.||..|...|+.++-+++.+...|.
T Consensus 2 ~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~ 36 (126)
T TIGR02689 2 KVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGL 36 (126)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcC
Confidence 355 6653 34566666666555434444444443
No 144
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=27.18 E-value=1.2e+02 Score=25.77 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=25.2
Q ss_pred eEEEeCCChHHHHHHHHHHHc--CCCCeeEecccHHHHH
Q 030091 139 EIIGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 175 (183)
Q Consensus 139 ~iv~C~~g~~s~~aa~~L~~~--G~~~v~~l~GG~~~W~ 175 (183)
.++||++|..+..+|-.|.+. |-+.|-...||+.+|.
T Consensus 96 ~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 134 (420)
T TIGR00700 96 KSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRT 134 (420)
T ss_pred EEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCc
Confidence 444999999888777766543 4444656677777664
No 145
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=26.92 E-value=1.2e+02 Score=25.99 Aligned_cols=37 Identities=22% Similarity=0.379 Sum_probs=25.7
Q ss_pred eEEEeCCChHHHHHHHHHHHc--CCCCeeEecccHHHHH
Q 030091 139 EIIGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 175 (183)
Q Consensus 139 ~iv~C~~g~~s~~aa~~L~~~--G~~~v~~l~GG~~~W~ 175 (183)
+++||++|..+..+|-.|.+. |-.+|-...|+|.+|.
T Consensus 103 ~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 141 (425)
T PRK07495 103 KTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRT 141 (425)
T ss_pred EEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCcc
Confidence 444999999888777666543 4445656678887774
No 146
>PTZ00110 helicase; Provisional
Probab=25.95 E-value=1.5e+02 Score=26.35 Aligned_cols=44 Identities=18% Similarity=0.196 Sum_probs=31.1
Q ss_pred HHHhhcCC-CCCeEE-EeCCChHHHHHHHHHHHcCCCCeeEecccHH
Q 030091 128 EEVSTRFR-KHDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFA 172 (183)
Q Consensus 128 ~~~~~~i~-~~~~iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~ 172 (183)
..++..+. ...+++ ||++-..+..++..|+..|+. +..+.|++.
T Consensus 367 ~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~-~~~ihg~~~ 412 (545)
T PTZ00110 367 KMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWP-ALCIHGDKK 412 (545)
T ss_pred HHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCc-EEEEECCCc
Confidence 33444432 455666 999988888999999999986 555777653
No 147
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=25.75 E-value=1.2e+02 Score=22.73 Aligned_cols=31 Identities=23% Similarity=0.146 Sum_probs=24.7
Q ss_pred CCeEE-EeC---CChHHHHHHHHHHHcCCCCeeEe
Q 030091 137 HDEII-GCQ---SGKRSMMAATDLLNAGFAGITDI 167 (183)
Q Consensus 137 ~~~iv-~C~---~g~~s~~aa~~L~~~G~~~v~~l 167 (183)
++.|+ +.+ +|.....++..|.+.|...|+++
T Consensus 152 ~~~vllvDDV~TTGaTl~~~~~~L~~~Ga~~V~~~ 186 (190)
T TIGR00201 152 GRNIVLVDDVVTTGATLHEIARLLLELGAASVQVW 186 (190)
T ss_pred CCEEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEE
Confidence 45666 655 78888899999999999888755
No 148
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=25.44 E-value=1.1e+02 Score=26.08 Aligned_cols=44 Identities=18% Similarity=0.276 Sum_probs=28.3
Q ss_pred hcCCCCCeEEEeCCChHHHHHHHHHHHc--CCCCeeEecccHHHHH
Q 030091 132 TRFRKHDEIIGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 175 (183)
Q Consensus 132 ~~i~~~~~iv~C~~g~~s~~aa~~L~~~--G~~~v~~l~GG~~~W~ 175 (183)
+.++.-..+.||++|..+..+|-.|.+. |-+.|-.+.||+.+|.
T Consensus 104 ~~~p~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 149 (428)
T PRK12389 104 EAIPSLEKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHS 149 (428)
T ss_pred HhCCCCcEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCh
Confidence 3344323433999999888777666543 4444666778888774
No 149
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=25.26 E-value=1.4e+02 Score=19.62 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=21.5
Q ss_pred CeEE-EeCCChHHHHHHHHHHHcCCCCe
Q 030091 138 DEII-GCQSGKRSMMAATDLLNAGFAGI 164 (183)
Q Consensus 138 ~~iv-~C~~g~~s~~aa~~L~~~G~~~v 164 (183)
-+|+ -|.+|..+..+-..|.++|.+.+
T Consensus 22 ~kivvD~~~G~~~~~~~~ll~~lg~~~~ 49 (104)
T PF02879_consen 22 LKIVVDCMNGAGSDILPRLLERLGCDVI 49 (104)
T ss_dssp CEEEEE-TTSTTHHHHHHHHHHTTCEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEE
Confidence 4777 88999999899999999998533
No 150
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=25.22 E-value=94 Score=23.61 Aligned_cols=26 Identities=19% Similarity=0.087 Sum_probs=19.6
Q ss_pred EeCCChHHHHHHHHHHHcCCCCeeEe
Q 030091 142 GCQSGKRSMMAATDLLNAGFAGITDI 167 (183)
Q Consensus 142 ~C~~g~~s~~aa~~L~~~G~~~v~~l 167 (183)
.+++|..-..++..|++.|-.+||.+
T Consensus 92 iIdtg~Tl~~aA~~Lk~~GA~~V~~~ 117 (184)
T PF14572_consen 92 IIDTGGTLIKAAELLKERGAKKVYAC 117 (184)
T ss_dssp EESSTHHHHHHHHHHHHTTESEEEEE
T ss_pred cccchHHHHHHHHHHHHcCCCEEEEE
Confidence 56677777788888888888777744
No 151
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=25.22 E-value=90 Score=23.02 Aligned_cols=75 Identities=17% Similarity=0.306 Sum_probs=29.8
Q ss_pred CEEEEcCCHH------hHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhc-CC-CCCeEE-EeCCCh-HHHHHHHHHH
Q 030091 88 HRYLDVRTPE------EFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR-FR-KHDEII-GCQSGK-RSMMAATDLL 157 (183)
Q Consensus 88 ~~lIDvR~~~------e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~-i~-~~~~iv-~C~~g~-~s~~aa~~L~ 157 (183)
-.||..|+.. +|...+=-.-++++........+...++.+.+.++. ++ .+.+|+ +|.+|. |...+...|+
T Consensus 34 KTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~~n~PvLiHC~~G~~rTG~vvg~lR 113 (164)
T PF03162_consen 34 KTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIILDPRNYPVLIHCNHGKDRTGLVVGCLR 113 (164)
T ss_dssp SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHH
T ss_pred ceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHHhCCCCCCEEEEeCCCCcchhhHHHHHH
Confidence 3577777542 232222223445554322111223345666666554 33 457888 999874 5555555555
Q ss_pred Hc-CCC
Q 030091 158 NA-GFA 162 (183)
Q Consensus 158 ~~-G~~ 162 (183)
+. |..
T Consensus 114 k~Q~W~ 119 (164)
T PF03162_consen 114 KLQGWS 119 (164)
T ss_dssp HHTTB-
T ss_pred HHcCCC
Confidence 43 543
No 152
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=24.89 E-value=1.1e+02 Score=26.21 Aligned_cols=49 Identities=22% Similarity=0.244 Sum_probs=31.0
Q ss_pred HHHHhhcCCCC-CeEEEeCCChHHHHHHHHHHHc--CCCCeeEecccHHHHH
Q 030091 127 VEEVSTRFRKH-DEIIGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 175 (183)
Q Consensus 127 ~~~~~~~i~~~-~~iv~C~~g~~s~~aa~~L~~~--G~~~v~~l~GG~~~W~ 175 (183)
.+.+.+.++.. .++.+|++|..+..+|-.+.+. |-..|-.+.||+.+|.
T Consensus 99 a~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t 150 (433)
T PRK00615 99 AEELFSYLGLEDHKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHA 150 (433)
T ss_pred HHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCC
Confidence 33344445443 3444999999988777666543 4344556778888876
No 153
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=24.89 E-value=1.4e+02 Score=25.65 Aligned_cols=36 Identities=25% Similarity=0.202 Sum_probs=25.3
Q ss_pred EE-EeCCChHHHHHHHHHHHc--CCCCeeEecccHHHHH
Q 030091 140 II-GCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 175 (183)
Q Consensus 140 iv-~C~~g~~s~~aa~~L~~~--G~~~v~~l~GG~~~W~ 175 (183)
-| ||++|..+..+|-.+.+. |-+.|-.+.|||.+|.
T Consensus 117 ~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t 155 (441)
T PRK05769 117 KVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRT 155 (441)
T ss_pred EEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCcc
Confidence 45 999998888777666443 5445666778887775
No 154
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=24.72 E-value=3.4e+02 Score=21.13 Aligned_cols=27 Identities=11% Similarity=0.015 Sum_probs=19.3
Q ss_pred CCeEE-EeCCChHHHH-HHHHHHHcCCCC
Q 030091 137 HDEII-GCQSGKRSMM-AATDLLNAGFAG 163 (183)
Q Consensus 137 ~~~iv-~C~~g~~s~~-aa~~L~~~G~~~ 163 (183)
.+..+ +|.+..++.. ++....++||+-
T Consensus 147 ~~~~v~vagDD~~Ak~~v~~L~~~iG~~~ 175 (211)
T COG2085 147 GRRDVLVAGDDAEAKAVVAELAEDIGFRP 175 (211)
T ss_pred CceeEEEecCcHHHHHHHHHHHHhcCcce
Confidence 46667 9998887765 555567889864
No 155
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=24.64 E-value=2.3e+02 Score=19.13 Aligned_cols=43 Identities=23% Similarity=0.180 Sum_probs=23.0
Q ss_pred HHHHHHhhcCCCCCeEE-EeCC--ChHHHHHHHHHHHcCCCCeeEecc
Q 030091 125 KFVEEVSTRFRKHDEII-GCQS--GKRSMMAATDLLNAGFAGITDIAG 169 (183)
Q Consensus 125 ~~~~~~~~~i~~~~~iv-~C~~--g~~s~~aa~~L~~~G~~~v~~l~G 169 (183)
+.+....+.++.+..|+ +|+- |.-...++..+ ..+++++++.|
T Consensus 45 ~~l~~~i~~~~~~~~vlil~Dl~ggsp~n~a~~~~--~~~~~~~vi~G 90 (116)
T PF03610_consen 45 EKLEEAIEELDEGDGVLILTDLGGGSPFNEAARLL--LDKPNIRVISG 90 (116)
T ss_dssp HHHHHHHHHCCTTSEEEEEESSTTSHHHHHHHHHH--CTSTTEEEEES
T ss_pred HHHHHHHHhccCCCcEEEEeeCCCCccchHHHHHh--ccCCCEEEEec
Confidence 34444555667777888 8883 33233333333 34445665654
No 156
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=24.60 E-value=2.6e+02 Score=25.75 Aligned_cols=34 Identities=18% Similarity=0.124 Sum_probs=28.1
Q ss_pred CCeEE-EeCCChHHHHHHHHHHHcCCCCeeEecccH
Q 030091 137 HDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGF 171 (183)
Q Consensus 137 ~~~iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~ 171 (183)
..+++ +|++-..+...+..|.+.|+. +..|.|..
T Consensus 473 ~~pvLIft~t~~~se~L~~~L~~~gi~-~~~Lhg~~ 507 (656)
T PRK12898 473 GRPVLVGTRSVAASERLSALLREAGLP-HQVLNAKQ 507 (656)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCCCC-EEEeeCCc
Confidence 45677 999988999999999999995 66677764
No 157
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=24.60 E-value=1.4e+02 Score=26.33 Aligned_cols=36 Identities=28% Similarity=0.408 Sum_probs=26.0
Q ss_pred CCCCeEEEeCCChHHHHHHHHHHHcCCCCeeEeccc
Q 030091 135 RKHDEIIGCQSGKRSMMAATDLLNAGFAGITDIAGG 170 (183)
Q Consensus 135 ~~~~~iv~C~~g~~s~~aa~~L~~~G~~~v~~l~GG 170 (183)
..+.+||+=..|.....+|..|.+.|+.++.+++|.
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~ 54 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEAS 54 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEec
Confidence 344567733445666678888989999999988864
No 158
>PRK07046 aminotransferase; Validated
Probab=24.36 E-value=1e+02 Score=26.61 Aligned_cols=36 Identities=11% Similarity=-0.019 Sum_probs=26.1
Q ss_pred EE-EeCCChHHHHHHHHHHHc--CCCCeeEecccHHHHH
Q 030091 140 II-GCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 175 (183)
Q Consensus 140 iv-~C~~g~~s~~aa~~L~~~--G~~~v~~l~GG~~~W~ 175 (183)
-| +|++|..+...|-.+.+. |-+.|-...|+|.+|.
T Consensus 132 ~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~ 170 (453)
T PRK07046 132 YWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTV 170 (453)
T ss_pred EEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCc
Confidence 35 999999888777666553 5455666788888873
No 159
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=24.34 E-value=2.2e+02 Score=18.75 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=20.7
Q ss_pred eEE-EeCCChHHH-HHHH----HHHHcCCCCeeEecccHHHH
Q 030091 139 EII-GCQSGKRSM-MAAT----DLLNAGFAGITDIAGGFAAW 174 (183)
Q Consensus 139 ~iv-~C~~g~~s~-~aa~----~L~~~G~~~v~~l~GG~~~W 174 (183)
+|+ .|.+|..+. .++. .|.+.|++ +.+....+...
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~-~~v~~~~~~e~ 44 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIP-VELIQCRVNEI 44 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCe-EEEEEecHHHH
Confidence 577 999997543 3333 45567874 55554454443
No 160
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=24.33 E-value=1.3e+02 Score=25.99 Aligned_cols=47 Identities=9% Similarity=0.036 Sum_probs=29.2
Q ss_pred HhhcCCCCCeEE-EeCCChHHHHHHHHHHHc-----CC---CCeeEecccHHHHHh
Q 030091 130 VSTRFRKHDEII-GCQSGKRSMMAATDLLNA-----GF---AGITDIAGGFAAWRQ 176 (183)
Q Consensus 130 ~~~~i~~~~~iv-~C~~g~~s~~aa~~L~~~-----G~---~~v~~l~GG~~~W~~ 176 (183)
+.+.++..-.-| ||++|..+..+|..|.+. |+ +.|-.+.||+.+|..
T Consensus 108 L~~~~p~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~ 163 (460)
T PRK06916 108 LIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTI 163 (460)
T ss_pred HHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccH
Confidence 333344432345 999998888777666543 44 235567788887653
No 161
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=24.25 E-value=94 Score=21.14 Aligned_cols=35 Identities=23% Similarity=0.125 Sum_probs=22.1
Q ss_pred eEE-EeCCChHHHHHHHHHH----HcCCCCeeEecccHHHH
Q 030091 139 EII-GCQSGKRSMMAATDLL----NAGFAGITDIAGGFAAW 174 (183)
Q Consensus 139 ~iv-~C~~g~~s~~aa~~L~----~~G~~~v~~l~GG~~~W 174 (183)
+|+ .|.+|..+..++..++ +.|++ +.+-..+....
T Consensus 3 kILlvCg~G~STSlla~k~k~~~~e~gi~-~~i~a~~~~e~ 42 (104)
T PRK09590 3 KALIICAAGMSSSMMAKKTTEYLKEQGKD-IEVDAITATEG 42 (104)
T ss_pred EEEEECCCchHHHHHHHHHHHHHHHCCCc-eEEEEecHHHH
Confidence 577 9999987766665554 45774 54444454443
No 162
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=23.81 E-value=2.5e+02 Score=19.22 Aligned_cols=41 Identities=17% Similarity=0.215 Sum_probs=21.9
Q ss_pred HHHHhhcCCCCCeEE-EeC--CChHHHHHHHHHHHcCCCCeeEecc
Q 030091 127 VEEVSTRFRKHDEII-GCQ--SGKRSMMAATDLLNAGFAGITDIAG 169 (183)
Q Consensus 127 ~~~~~~~i~~~~~iv-~C~--~g~~s~~aa~~L~~~G~~~v~~l~G 169 (183)
+....+.++.+..|+ +++ +|.-...+...+.+ +++++++.|
T Consensus 48 l~~~i~~~~~~~~vivltDl~GGSp~n~a~~~~~~--~~~~~vIsG 91 (116)
T TIGR00824 48 YNAALADLDTEEEVLFLVDIFGGSPYNAAARIIVD--KPHMDVIAG 91 (116)
T ss_pred HHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHhh--cCCEEEEEe
Confidence 344455566666666 776 34444344434433 456776655
No 163
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=23.75 E-value=86 Score=23.52 Aligned_cols=38 Identities=18% Similarity=0.059 Sum_probs=24.7
Q ss_pred hcCCCCC-eEE-EeCCChHHHHHHHHHHHcCCCC--eeEecc
Q 030091 132 TRFRKHD-EII-GCQSGKRSMMAATDLLNAGFAG--ITDIAG 169 (183)
Q Consensus 132 ~~i~~~~-~iv-~C~~g~~s~~aa~~L~~~G~~~--v~~l~G 169 (183)
...+.+. .++ ||-+|.-+..+|..|.+.|++- |..+++
T Consensus 61 ~~~~~gp~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD~ 102 (229)
T PF00975_consen 61 ARQPEGPYVLAGWSFGGILAFEMARQLEEAGEEVSRLILIDS 102 (229)
T ss_dssp HHTSSSSEEEEEETHHHHHHHHHHHHHHHTT-SESEEEEESC
T ss_pred hhCCCCCeeehccCccHHHHHHHHHHHHHhhhccCceEEecC
Confidence 3344433 334 7778888999999999999852 444553
No 164
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=23.73 E-value=1.6e+02 Score=24.94 Aligned_cols=43 Identities=14% Similarity=0.109 Sum_probs=26.6
Q ss_pred cCCCCCeEE-EeCCChHHHHHHHHHHHc-----C---CCCeeEecccHHHHH
Q 030091 133 RFRKHDEII-GCQSGKRSMMAATDLLNA-----G---FAGITDIAGGFAAWR 175 (183)
Q Consensus 133 ~i~~~~~iv-~C~~g~~s~~aa~~L~~~-----G---~~~v~~l~GG~~~W~ 175 (183)
..+..-.-| ||++|..+..+|-.+.+. | -++|-.+.||+.+|.
T Consensus 97 ~~p~~~~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t 148 (423)
T PRK05964 97 LTPGGLDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDT 148 (423)
T ss_pred hCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCcc
Confidence 344333345 999998887766665432 2 234656788887764
No 165
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=23.58 E-value=1.2e+02 Score=29.15 Aligned_cols=35 Identities=11% Similarity=0.305 Sum_probs=26.7
Q ss_pred CCeEE-EeCCChHHHHHHHHH-HHcCCCCeeEecccHH
Q 030091 137 HDEII-GCQSGKRSMMAATDL-LNAGFAGITDIAGGFA 172 (183)
Q Consensus 137 ~~~iv-~C~~g~~s~~aa~~L-~~~G~~~v~~l~GG~~ 172 (183)
+.++| ||++..........| ...|++ +..+.||+.
T Consensus 493 ~~KvLVF~~~~~t~~~L~~~L~~~~Gi~-~~~ihG~~s 529 (956)
T PRK04914 493 SEKVLVICAKAATALQLEQALREREGIR-AAVFHEGMS 529 (956)
T ss_pred CCeEEEEeCcHHHHHHHHHHHhhccCee-EEEEECCCC
Confidence 34566 999988888888999 466986 667888864
No 166
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=23.54 E-value=2.4e+02 Score=21.65 Aligned_cols=21 Identities=14% Similarity=0.309 Sum_probs=16.5
Q ss_pred HHHHHHHHHHcCCCCeeEeccc
Q 030091 149 SMMAATDLLNAGFAGITDIAGG 170 (183)
Q Consensus 149 s~~aa~~L~~~G~~~v~~l~GG 170 (183)
+......|.+.|+ ++|+|+|-
T Consensus 40 A~ale~~L~~~G~-~~y~LDGD 60 (197)
T COG0529 40 ANALEEKLFAKGY-HVYLLDGD 60 (197)
T ss_pred HHHHHHHHHHcCC-eEEEecCh
Confidence 4456778889998 59999983
No 167
>PLN02347 GMP synthetase
Probab=23.37 E-value=1.9e+02 Score=25.80 Aligned_cols=44 Identities=20% Similarity=0.290 Sum_probs=29.6
Q ss_pred HHHHhhcCCCCCeEE-EeCCChHHHHHHHHHHH-cCCCCee--EecccH
Q 030091 127 VEEVSTRFRKHDEII-GCQSGKRSMMAATDLLN-AGFAGIT--DIAGGF 171 (183)
Q Consensus 127 ~~~~~~~i~~~~~iv-~C~~g~~s~~aa~~L~~-~G~~~v~--~l~GG~ 171 (183)
++.+.+.+.++.+++ .-.+|..|..++..+.+ +|. ++. .++.|+
T Consensus 219 i~~i~~~~~~~~~vvvalSGGVDSsvla~l~~~alG~-~v~av~id~g~ 266 (536)
T PLN02347 219 IELIKATVGPDEHVICALSGGVDSTVAATLVHKAIGD-RLHCVFVDNGL 266 (536)
T ss_pred HHHHHHHhccCCeEEEEecCChhHHHHHHHHHHHhCC-cEEEEEEeCCC
Confidence 344444566566666 66788999988888887 684 554 556554
No 168
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=23.33 E-value=2.3e+02 Score=18.69 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=25.5
Q ss_pred CCCeEE-EeCCChHHHHHHHHHHHcCCCCeeEecccH
Q 030091 136 KHDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGF 171 (183)
Q Consensus 136 ~~~~iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~ 171 (183)
.+.+++ ||.+-.....++..|.+.+. ++..+.|++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 62 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPGI-KVAALHGDG 62 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcCC-cEEEEECCC
Confidence 455666 99987777788888887665 466777764
No 169
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=23.27 E-value=87 Score=21.12 Aligned_cols=35 Identities=23% Similarity=0.454 Sum_probs=22.8
Q ss_pred eEE-EeCCChHHHHHHHHHH----HcCCCCeeEecccHHHH
Q 030091 139 EII-GCQSGKRSMMAATDLL----NAGFAGITDIAGGFAAW 174 (183)
Q Consensus 139 ~iv-~C~~g~~s~~aa~~L~----~~G~~~v~~l~GG~~~W 174 (183)
+|+ .|.+|..|..++..++ +.|++ +.+...+....
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~-~~i~a~~~~e~ 41 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVP-LEAAAGAYGSH 41 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCc-EEEEEeeHHHH
Confidence 367 9998977776666554 56774 55555555543
No 170
>PRK06062 hypothetical protein; Provisional
Probab=23.10 E-value=1.3e+02 Score=25.92 Aligned_cols=42 Identities=7% Similarity=-0.034 Sum_probs=27.6
Q ss_pred CCCCCeEE-EeCCChHHHHHHHHHHHc--CCCCeeEecccHHHHH
Q 030091 134 FRKHDEII-GCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 175 (183)
Q Consensus 134 i~~~~~iv-~C~~g~~s~~aa~~L~~~--G~~~v~~l~GG~~~W~ 175 (183)
.+.+-.-| ||++|..+..+|-.+.+. |-++|-...|||.+|.
T Consensus 108 ~p~~~~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t 152 (451)
T PRK06062 108 APGDLSKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGT 152 (451)
T ss_pred CCCCCCEEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCC
Confidence 44433345 999999888777766543 4444656778887774
No 171
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=23.04 E-value=1.2e+02 Score=19.22 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=15.5
Q ss_pred eEE-EeCCChHHHHHH-H----HHHHcCCC
Q 030091 139 EII-GCQSGKRSMMAA-T----DLLNAGFA 162 (183)
Q Consensus 139 ~iv-~C~~g~~s~~aa-~----~L~~~G~~ 162 (183)
+|+ .|.+|..+...+ . .+.+.|++
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~ 30 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIE 30 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTEC
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCc
Confidence 467 999997654433 4 44566875
No 172
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=23.04 E-value=1.4e+02 Score=21.85 Aligned_cols=46 Identities=15% Similarity=0.157 Sum_probs=30.8
Q ss_pred HHHHhhcCCCCCeEE-EeCCC--hHHHHHHHHHHH---cCCCCeeEecccHHHH
Q 030091 127 VEEVSTRFRKHDEII-GCQSG--KRSMMAATDLLN---AGFAGITDIAGGFAAW 174 (183)
Q Consensus 127 ~~~~~~~i~~~~~iv-~C~~g--~~s~~aa~~L~~---~G~~~v~~l~GG~~~W 174 (183)
-..++..++ +..+| .+..| ..|...|..+.+ .| .++..+-||-.++
T Consensus 56 ~~~il~~~~-~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g-~~i~FvIGGa~G~ 107 (153)
T TIGR00246 56 GDRILAAIG-KAHVVTLDIPGKPWTTPQLADTLEKWKTDG-RDVTLLIGGPEGL 107 (153)
T ss_pred HHHHHHhCC-CCeEEEEcCCCCcCCHHHHHHHHHHHhccC-CeEEEEEcCCCcC
Confidence 345566677 45666 77766 457788888875 35 4687788886655
No 173
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=22.87 E-value=1.7e+02 Score=24.27 Aligned_cols=37 Identities=16% Similarity=-0.004 Sum_probs=26.8
Q ss_pred CCeEE-EeCCChHHHHHHHHHHHcCCC-CeeEecccHHH
Q 030091 137 HDEII-GCQSGKRSMMAATDLLNAGFA-GITDIAGGFAA 173 (183)
Q Consensus 137 ~~~iv-~C~~g~~s~~aa~~L~~~G~~-~v~~l~GG~~~ 173 (183)
+.+++ ||++-..+...+..|+..|+. .+..+.|....
T Consensus 272 ~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~ 310 (357)
T TIGR03158 272 GERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPK 310 (357)
T ss_pred CCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCH
Confidence 34555 999988899999999987653 46566665444
No 174
>PRK07481 hypothetical protein; Provisional
Probab=22.43 E-value=1.3e+02 Score=25.89 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=25.8
Q ss_pred eEE-EeCCChHHHHHHHHHHHc-----C---CCCeeEecccHHHHHh
Q 030091 139 EII-GCQSGKRSMMAATDLLNA-----G---FAGITDIAGGFAAWRQ 176 (183)
Q Consensus 139 ~iv-~C~~g~~s~~aa~~L~~~-----G---~~~v~~l~GG~~~W~~ 176 (183)
.-| ||++|..+..+|-.|.+. | -+.|-.+.||+.+|..
T Consensus 105 ~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ 151 (449)
T PRK07481 105 RRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHF 151 (449)
T ss_pred CEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcch
Confidence 345 999998887766666442 2 2346678888888864
No 175
>PF12404 DUF3663: Peptidase ; InterPro: IPR008330 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family represents the peptidase B group of leucyl aminopeptidases, which are restricted to the gammaproteobacteria. They contain a C-terminal aminopeptidase catalytic domain and an N-terminal domain of unknown function. They are zinc-dependent exopeptidases (3.4.11.1 from EC) and belong to MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF). They selectively release N-terminal amino acid residues from polypeptides and proteins and are involved in the processing, catabolism and degradation of intracellular proteins [, , ]. Leucyl aminopeptidase forms a homohexamer containing two trimers stacked on top of one another []. Each monomer binds two zinc ions. The zinc-binding and catalytic sites are located within the C-terminal catalytic domain []. The same catalytic aminopeptidase domain is found in the other M17 peptidases IPR011356 from INTERPRO. These two groups of aminopeptidases differ by their N-terminal domains. The N-terminal domain in members of IPR011356 from INTERPRO has been implicated in DNA binding [, ] and it is not associated with members of this family which have a different N-terminal domain and therefore are not expected to bind DNA or be involved in transcriptional regulation. In addition, there are related proteins with the same catalytic domain and unique N-terminal sequences unrelated to any of the two N-terminal domains discussed above. For additional information please see [, , , ]. ; GO: 0004177 aminopeptidase activity, 0008235 metalloexopeptidase activity, 0030145 manganese ion binding, 0005737 cytoplasm
Probab=22.04 E-value=53 Score=21.21 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=22.5
Q ss_pred CCCCeEE-EeCC-ChH-HHHHHHHHHHcCCCCeeEecc
Q 030091 135 RKHDEII-GCQS-GKR-SMMAATDLLNAGFAGITDIAG 169 (183)
Q Consensus 135 ~~~~~iv-~C~~-g~~-s~~aa~~L~~~G~~~v~~l~G 169 (183)
+.+.-.| +... ..+ -.++++.|...|+++|. |.|
T Consensus 23 ~~~ga~IHl~~~~~l~~IQrAaRkLd~qGI~~V~-L~G 59 (77)
T PF12404_consen 23 NEQGATIHLSEGDDLRAIQRAARKLDGQGIKNVA-LAG 59 (77)
T ss_pred cCCCEEEEECCCcchHHHHHHHHHHhhCCCceEE-Eec
Confidence 3445555 4222 233 45899999999999987 555
No 176
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=21.98 E-value=1.9e+02 Score=24.81 Aligned_cols=37 Identities=11% Similarity=0.138 Sum_probs=25.5
Q ss_pred eEEEeCCChHHHHHHHHHHHc--CCCCeeEecccHHHHH
Q 030091 139 EIIGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 175 (183)
Q Consensus 139 ~iv~C~~g~~s~~aa~~L~~~--G~~~v~~l~GG~~~W~ 175 (183)
.++||++|..+..+|-.|.+. |-+.|-...||+.+|.
T Consensus 119 ~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 157 (443)
T PRK06058 119 RSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRT 157 (443)
T ss_pred EEEEeCCcHHHHHHHHHHHHHhhCCCeEEEECCCcCcCh
Confidence 444999998887777666443 4455666778888775
No 177
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=21.69 E-value=1e+02 Score=20.42 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=21.4
Q ss_pred EE-EeCCChHHHHHHHHH----HHcCCCCeeEecccHHHH
Q 030091 140 II-GCQSGKRSMMAATDL----LNAGFAGITDIAGGFAAW 174 (183)
Q Consensus 140 iv-~C~~g~~s~~aa~~L----~~~G~~~v~~l~GG~~~W 174 (183)
|+ .|.+|..+..++..+ .+.|++ +.+-..++..-
T Consensus 2 Il~~Cg~G~sTS~~~~ki~~~~~~~~~~-~~v~~~~~~~~ 40 (96)
T cd05564 2 ILLVCSAGMSTSILVKKMKKAAEKRGID-AEIEAVPESEL 40 (96)
T ss_pred EEEEcCCCchHHHHHHHHHHHHHHCCCc-eEEEEecHHHH
Confidence 66 999998766655554 445774 55555555443
No 178
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=21.52 E-value=1.5e+02 Score=25.51 Aligned_cols=46 Identities=11% Similarity=-0.055 Sum_probs=28.5
Q ss_pred HhhcCCCC-CeEEEeCCChHHHHHHHHHHHc--CCCCeeEecccHHHHH
Q 030091 130 VSTRFRKH-DEIIGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 175 (183)
Q Consensus 130 ~~~~i~~~-~~iv~C~~g~~s~~aa~~L~~~--G~~~v~~l~GG~~~W~ 175 (183)
+.+..+.. .++.||++|..+..+|-.+.+. |-+.|-.+.||+.+|.
T Consensus 93 L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t 141 (443)
T PRK08360 93 LIEIAPGDNPKVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGST 141 (443)
T ss_pred HHHhCCCCCCEEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcC
Confidence 33334433 3433999999888777666543 4444556677777764
No 179
>PRK08297 L-lysine aminotransferase; Provisional
Probab=21.33 E-value=1.7e+02 Score=25.25 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=26.2
Q ss_pred CCCeEE-EeCCChHHHHHHHHHHH---------cCC-----CCeeEecccHHHHH
Q 030091 136 KHDEII-GCQSGKRSMMAATDLLN---------AGF-----AGITDIAGGFAAWR 175 (183)
Q Consensus 136 ~~~~iv-~C~~g~~s~~aa~~L~~---------~G~-----~~v~~l~GG~~~W~ 175 (183)
++-.-| ||++|..+..+|-.+.+ .|. +.|-.+.|||.+|.
T Consensus 108 ~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t 162 (443)
T PRK08297 108 PELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRS 162 (443)
T ss_pred CCCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcc
Confidence 333445 99999888776666642 355 23556778887774
No 180
>PRK05965 hypothetical protein; Provisional
Probab=21.07 E-value=1.8e+02 Score=25.15 Aligned_cols=47 Identities=11% Similarity=0.143 Sum_probs=28.3
Q ss_pred HHhhcCCCCCeEE-EeCCChHHHHHHHHHHH-c----CC---CCeeEecccHHHHH
Q 030091 129 EVSTRFRKHDEII-GCQSGKRSMMAATDLLN-A----GF---AGITDIAGGFAAWR 175 (183)
Q Consensus 129 ~~~~~i~~~~~iv-~C~~g~~s~~aa~~L~~-~----G~---~~v~~l~GG~~~W~ 175 (183)
.+.+..+.+-.-| ||++|..+..+|-.+.+ + |. +.|-.+.+||.+|.
T Consensus 98 ~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t 153 (459)
T PRK05965 98 KLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSS 153 (459)
T ss_pred HHHhhCCCCcCEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCccc
Confidence 3334444443446 99999888776655533 2 42 23556778888774
No 181
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=21.07 E-value=1.5e+02 Score=25.36 Aligned_cols=44 Identities=11% Similarity=0.031 Sum_probs=26.5
Q ss_pred hcCCCCCeEE-EeCCChHHHHHHHHHHHc-------CCCCeeEecccHHHHH
Q 030091 132 TRFRKHDEII-GCQSGKRSMMAATDLLNA-------GFAGITDIAGGFAAWR 175 (183)
Q Consensus 132 ~~i~~~~~iv-~C~~g~~s~~aa~~L~~~-------G~~~v~~l~GG~~~W~ 175 (183)
+..+.+-.-| ||++|..+..+|-.|.+. |-.++-.+.||+.+|.
T Consensus 97 ~~~p~~~~~v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t 148 (428)
T PRK07986 97 AMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDT 148 (428)
T ss_pred hhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCc
Confidence 3344333345 999998887766665432 2234556778777654
No 182
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=21.07 E-value=3.4e+02 Score=21.97 Aligned_cols=13 Identities=23% Similarity=0.284 Sum_probs=7.3
Q ss_pred HHHHHHHHHcCCC
Q 030091 150 MMAATDLLNAGFA 162 (183)
Q Consensus 150 ~~aa~~L~~~G~~ 162 (183)
.+.++.|.+.|.+
T Consensus 150 ~~la~eL~~~GI~ 162 (275)
T PRK08335 150 LALANELEFLGIE 162 (275)
T ss_pred HHHHHHHHHCCCC
Confidence 3446666666654
No 183
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=20.70 E-value=1.4e+02 Score=25.90 Aligned_cols=48 Identities=23% Similarity=0.216 Sum_probs=30.8
Q ss_pred HHHhhcCCCCCeEE-EeCCChHHHHHHHHHHHc--CCCCeeEecccHHHHH
Q 030091 128 EEVSTRFRKHDEII-GCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 175 (183)
Q Consensus 128 ~~~~~~i~~~~~iv-~C~~g~~s~~aa~~L~~~--G~~~v~~l~GG~~~W~ 175 (183)
.+.+...-+.-.-| +|++|..+...+-.|.+. |-+.|-..+|.+.+|.
T Consensus 99 Aell~~~~p~~e~vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~~ 149 (432)
T COG0001 99 AELLIERVPSIEKVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHS 149 (432)
T ss_pred HHHHHHhcCcccEEEEecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCc
Confidence 33443333444667 999999988877777553 4455666777776554
No 184
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=20.68 E-value=1.1e+02 Score=25.47 Aligned_cols=14 Identities=21% Similarity=0.686 Sum_probs=10.1
Q ss_pred CCCCCeEE-EeCCCh
Q 030091 134 FRKHDEII-GCQSGK 147 (183)
Q Consensus 134 i~~~~~iv-~C~~g~ 147 (183)
+++...|+ +|+.|.
T Consensus 147 l~~~~~VLThCNaGa 161 (346)
T COG0182 147 LPDGDTVLTHCNAGA 161 (346)
T ss_pred hccCCeEEeeecCCc
Confidence 46667788 999773
No 185
>PRK06149 hypothetical protein; Provisional
Probab=20.63 E-value=1.4e+02 Score=28.63 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=29.0
Q ss_pred cCCCCCeEE-EeCCChHHHHHHHHHHHc--CCCCeeEecccHHHHH
Q 030091 133 RFRKHDEII-GCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 175 (183)
Q Consensus 133 ~i~~~~~iv-~C~~g~~s~~aa~~L~~~--G~~~v~~l~GG~~~W~ 175 (183)
.++.+..-+ +|++|..+..+|-.|.+. |-+.+-.+++|+.+|.
T Consensus 636 ~~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t 681 (972)
T PRK06149 636 LAPDGLDTVFLVNSGSEANDLAIRLAWAASGRRDVVSVLEAYHGWT 681 (972)
T ss_pred hCCCCcCEEEEeCCchHHHHHHHHHHHHhcCCCeEEEEeCCCCCcC
Confidence 344433456 999999888777666442 5455667788888775
No 186
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=20.62 E-value=3e+02 Score=21.14 Aligned_cols=47 Identities=17% Similarity=0.172 Sum_probs=31.0
Q ss_pred CCCCeEE-EeC---CChHHHHHHHHHHHcCCCCe---eEec---ccHHHHHhCCCCC
Q 030091 135 RKHDEII-GCQ---SGKRSMMAATDLLNAGFAGI---TDIA---GGFAAWRQNGLPT 181 (183)
Q Consensus 135 ~~~~~iv-~C~---~g~~s~~aa~~L~~~G~~~v---~~l~---GG~~~W~~~g~pv 181 (183)
.++++|+ +.+ +|.....++..|++.|..-+ .+++ ||.......|.|+
T Consensus 116 ~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~vv~v~vlvdr~~~~~~~l~~~gi~v 172 (206)
T PRK13809 116 TPGQTCLVINDMVSSGKSIIETAVALEEEGLVVREALVFLDRQKGACQPLGPQGIKL 172 (206)
T ss_pred CCCCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECcccHHHHHHhcCCCE
Confidence 4556777 665 68888889999999997542 2444 5444444567665
No 187
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=20.57 E-value=2.9e+02 Score=18.91 Aligned_cols=43 Identities=7% Similarity=0.066 Sum_probs=28.3
Q ss_pred HHHHHHhhcCCCCCeEE-EeCCCh---HHHHHHHHHHHcCCCCeeEe
Q 030091 125 KFVEEVSTRFRKHDEII-GCQSGK---RSMMAATDLLNAGFAGITDI 167 (183)
Q Consensus 125 ~~~~~~~~~i~~~~~iv-~C~~g~---~s~~aa~~L~~~G~~~v~~l 167 (183)
+.+...+...+++..|+ -++... +-..+...+++.|+++|.+.
T Consensus 72 ~~L~~~l~~~~~~~~v~i~aD~~~~~~~vv~v~d~~~~~G~~~v~l~ 118 (121)
T TIGR02804 72 EELEAEIAQLNKDQKVTLKSDKEAKFQDFVTITDMLKAKEHENVQIV 118 (121)
T ss_pred HHHHHHHHhhCCCCeEEEEeCCCCCHhHHHHHHHHHHHcCCCeEEEE
Confidence 44444445555666777 666543 34467888899999998753
No 188
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=20.56 E-value=1.3e+02 Score=19.21 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=15.2
Q ss_pred ChHHHHHHHHHHHcCCCCe
Q 030091 146 GKRSMMAATDLLNAGFAGI 164 (183)
Q Consensus 146 g~~s~~aa~~L~~~G~~~v 164 (183)
...+..++..|+..||+.+
T Consensus 15 ~GlA~~~a~~L~~~Gf~v~ 33 (90)
T PF13399_consen 15 SGLAARVADALRNRGFTVV 33 (90)
T ss_pred cCHHHHHHHHHHHCCCcee
Confidence 3567799999999999753
No 189
>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]
Probab=20.55 E-value=2.1e+02 Score=23.94 Aligned_cols=43 Identities=9% Similarity=0.125 Sum_probs=28.6
Q ss_pred HhhcCCCCCeEE-EeCCChHHHHHHHHHHHc--CCCCeeEecccHHH
Q 030091 130 VSTRFRKHDEII-GCQSGKRSMMAATDLLNA--GFAGITDIAGGFAA 173 (183)
Q Consensus 130 ~~~~i~~~~~iv-~C~~g~~s~~aa~~L~~~--G~~~v~~l~GG~~~ 173 (183)
+.+.+|. -.++ ||++|..+...+..|.+. +++.|..|+..+.+
T Consensus 95 l~stlPe-Lsvc~F~NSGSEANDLALRLAR~ftkhqDvItldHAYHG 140 (452)
T KOG1403|consen 95 LTSTLPE-LSVCFFVNSGSEANDLALRLARNFTKHQDVITLDHAYHG 140 (452)
T ss_pred HhhcCCC-ceEEEEecCCchhhHHHHHHHHhhcccCceEEEechhcc
Confidence 3444555 5677 999999888877777553 66667666654443
No 190
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=20.41 E-value=1.8e+02 Score=24.78 Aligned_cols=38 Identities=21% Similarity=0.369 Sum_probs=25.8
Q ss_pred CeEEEeCCChHHHHHHHHHHHc--CCCCeeEecccHHHHH
Q 030091 138 DEIIGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 175 (183)
Q Consensus 138 ~~iv~C~~g~~s~~aa~~L~~~--G~~~v~~l~GG~~~W~ 175 (183)
.+++||++|..+..+|-.|.+. |-..|-.+.||+.+|.
T Consensus 102 ~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 141 (421)
T PRK09792 102 AKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRT 141 (421)
T ss_pred ceEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCcc
Confidence 3445888998888777766553 4344556778887774
No 191
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=20.34 E-value=2.3e+02 Score=20.67 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=28.2
Q ss_pred HHHHHHhhcCCCCCeEEEeCCC-hHHHHHHHHHHHcCCCCeeEeccc
Q 030091 125 KFVEEVSTRFRKHDEIIGCQSG-KRSMMAATDLLNAGFAGITDIAGG 170 (183)
Q Consensus 125 ~~~~~~~~~i~~~~~iv~C~~g-~~s~~aa~~L~~~G~~~v~~l~GG 170 (183)
.++......+.++..++++... .....+...|.+.||....+-..|
T Consensus 121 ~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~ 167 (179)
T TIGR00537 121 RFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAERG 167 (179)
T ss_pred HHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEee
Confidence 3444444556777777643333 336678889999999754444444
No 192
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=20.27 E-value=1.4e+02 Score=25.84 Aligned_cols=42 Identities=26% Similarity=0.238 Sum_probs=26.6
Q ss_pred CCCCCeEE-EeCCChHHHHHHHHHHHc-----CCCCeeEecccHHHHH
Q 030091 134 FRKHDEII-GCQSGKRSMMAATDLLNA-----GFAGITDIAGGFAAWR 175 (183)
Q Consensus 134 i~~~~~iv-~C~~g~~s~~aa~~L~~~-----G~~~v~~l~GG~~~W~ 175 (183)
.+.+-.-+ +|++|..+..+|-.|.+. |-..|-.+.|||.+|.
T Consensus 137 ~p~~~~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t 184 (459)
T PRK11522 137 TPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKS 184 (459)
T ss_pred CCCCCCEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCc
Confidence 44433456 999998888777666543 2223556678887774
No 193
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=20.19 E-value=1.8e+02 Score=26.71 Aligned_cols=46 Identities=11% Similarity=0.226 Sum_probs=33.2
Q ss_pred HHHHHHhhcCCCCCeEE-EeCCChHHHHHHHHHHHcCCCCeeEecccH
Q 030091 125 KFVEEVSTRFRKHDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGF 171 (183)
Q Consensus 125 ~~~~~~~~~i~~~~~iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~ 171 (183)
..+..+...+.++..++ +|++-.++...+..|...|+. +..+.|++
T Consensus 430 ~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~-~~~lh~~~ 476 (655)
T TIGR00631 430 DLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIK-VRYLHSEI 476 (655)
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccc-eeeeeCCC
Confidence 34444444455666777 999988888999999999985 65565654
No 194
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=20.01 E-value=1.8e+02 Score=26.52 Aligned_cols=47 Identities=11% Similarity=0.208 Sum_probs=33.2
Q ss_pred HHHHHHhhcCCCCCeEE-EeCCChHHHHHHHHHHHcCCCCeeEecccHH
Q 030091 125 KFVEEVSTRFRKHDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFA 172 (183)
Q Consensus 125 ~~~~~~~~~i~~~~~iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~ 172 (183)
..+..+...+..+..++ +|++-.++...+..|...|++ +..+.|++.
T Consensus 434 ~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~-~~~~h~~~~ 481 (652)
T PRK05298 434 DLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIK-VRYLHSDID 481 (652)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhccee-EEEEECCCC
Confidence 33444444445666777 999988899999999999984 666666543
Done!