BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030092
(183 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 203 bits (516), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 88/144 (61%), Positives = 114/144 (79%)
Query: 7 RREMDLMKLMMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSI 66
R++ D KL+M+ Y +E+ N Q+F V F GPN + Y GG+W++ V LPD YP+ SPSI
Sbjct: 6 RKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSI 65
Query: 67 GFVNKIYHPNIDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAA 126
GF+NK+ HPN+DE SGSVCLDVINQTW+P++ LVNVFEVFLPQLL YPNPSDPLN +AA+
Sbjct: 66 GFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAAS 125
Query: 127 LLMRDRAAYEQRVKEYREKYAKAE 150
LLM+D+ YE++VKEY + YA +
Sbjct: 126 LLMKDKNIYEEKVKEYVKLYASKD 149
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 199 bits (505), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 91/156 (58%), Positives = 122/156 (78%), Gaps = 4/156 (2%)
Query: 1 MSSPS---KRREMDLMKLMMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPD 57
MSSPS +R + D++KL+ S ++V ++ G+ EF V F GP +PY GGVW++RV+LPD
Sbjct: 20 MSSPSPGKRRMDTDVIKLIESKHEVTILG-GLNEFVVKFYGPQGTPYEGGVWKVRVDLPD 78
Query: 58 AYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPS 117
YP+KSPSIGF+NKI+HPNIDE SG+VCLDVINQTW+ ++DL N+FE FLPQLL YPNP
Sbjct: 79 KYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPI 138
Query: 118 DPLNGEAAALLMRDRAAYEQRVKEYREKYAKAEDIE 153
DPLNG+AAA+ + Y+Q++KEY +KYA E ++
Sbjct: 139 DPLNGDAAAMYLHRPEEYKQKIKEYIQKYATEEALK 174
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 178 bits (452), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 84/153 (54%), Positives = 111/153 (72%), Gaps = 2/153 (1%)
Query: 5 SKRREMDLMKLMMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSP 64
++RREMD M+L S KV +D + EF+V F+GP +PY G W + V+LP YP+KSP
Sbjct: 14 NRRREMDYMRLCNSTRKV-YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSP 72
Query: 65 SIGFVNKIYHPNIDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEA 124
SIGF N+I HPN+DE SGSVCLDVINQTW+PM+ L N+F+VFLPQLL YPNPSDPLN +A
Sbjct: 73 SIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQA 132
Query: 125 AALLMRDRAAYEQRVKEYREKYAKAED-IEAAP 156
A LL DR ++ ++E+ +A + +E+ P
Sbjct: 133 AHLLHADRVGFDALLREHVSTHATPQKALESIP 165
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 INDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV 84
+ D + + GPN+SPY GGV+ + + P YP+K P + F +IYHPNI+ +GS+
Sbjct: 36 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 94
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYRE 144
CLD++ WSP + V + + LL PNP DPL E A + DR Y + +E+ +
Sbjct: 95 CLDILRSQWSPALTISKVL-LSICSLLCDPNPDDPLVPEIARIYQTDREKYNRIAREWTQ 153
Query: 145 KYA 147
KYA
Sbjct: 154 KYA 156
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 75/137 (54%), Gaps = 2/137 (1%)
Query: 11 DLMKLMMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVN 70
DL K ++ + D + + GP +SPY GGV+ + + P YP+K P + F
Sbjct: 32 DLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTT 91
Query: 71 KIYHPNIDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMR 130
KIYHPNI+ G++CLD++ WSP + V + + LL PNP DPL E A L
Sbjct: 92 KIYHPNINSQ-GAICLDILKDQWSPALTISKVL-LSISSLLTDPNPDDPLVPEIAHLYKS 149
Query: 131 DRAAYEQRVKEYREKYA 147
DR Y+Q +E+ +KYA
Sbjct: 150 DRMRYDQTAREWSQKYA 166
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 INDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV 84
+ D + + GPN+SPY GGV+ + + P YP+K P + F +IYHPNI+ +GS+
Sbjct: 44 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 102
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYRE 144
CLD++ WSP + V + + LL PNP DPL E A + DR Y + +E+ +
Sbjct: 103 CLDILRSQWSPALTISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ 161
Query: 145 KYA 147
KYA
Sbjct: 162 KYA 164
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 INDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV 84
+ D + + GPN+SPY GGV+ + + P YP+K P + F +IYHPNI+ +GS+
Sbjct: 31 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 89
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYRE 144
CLD++ WSP + V + + LL PNP DPL E A + DR Y + +E+ +
Sbjct: 90 CLDILRSQWSPALTISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ 148
Query: 145 KYA 147
KYA
Sbjct: 149 KYA 151
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 25 INDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV 84
+ D + + GP ESPY GGV+ + + P YP+K P + F +IYHPNI+ +GS+
Sbjct: 29 VGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 87
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYRE 144
CLD++ WSP + V + + LL PNP DPL E A + DR Y Q +E+ +
Sbjct: 88 CLDILRSQWSPALTISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQ 146
Query: 145 KYA 147
KYA
Sbjct: 147 KYA 149
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 INDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV 84
+ D + + GPN+SPY GGV+ + + P YP+K P + F +IYHPNI+ +GS+
Sbjct: 28 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 86
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYRE 144
CLD++ WSP + V + + LL PNP DPL E A + DR Y + +E+ +
Sbjct: 87 CLDILRSQWSPALTISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ 145
Query: 145 KYA 147
KYA
Sbjct: 146 KYA 148
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 103 bits (257), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 INDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV 84
+ D + + GPN+SPY GGV+ + + P YP+K P + F +IYHPNI+ +GS+
Sbjct: 26 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 84
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYRE 144
CLD++ WSP + V + + LL PNP DPL E A + DR Y + +E+ +
Sbjct: 85 CLDILRSQWSPALTISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ 143
Query: 145 KYA 147
KYA
Sbjct: 144 KYA 146
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 103 bits (257), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 INDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV 84
+ D + + GPN+SPY GGV+ + + P YP+K P + F +IYHPNI+ +GS+
Sbjct: 28 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 86
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYRE 144
CLD++ WSP + V + + LL PNP DPL E A + DR Y + +E+ +
Sbjct: 87 CLDILRSQWSPALTISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ 145
Query: 145 KYA 147
KYA
Sbjct: 146 KYA 148
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 103 bits (256), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 INDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV 84
+ D + + GPN+SPY GGV+ + + P YP+K P + F +IYHPNI+ +GS+
Sbjct: 36 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 94
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYRE 144
CLD++ WSP + V + + LL PNP DPL E A + DR Y + +E+ +
Sbjct: 95 CLDILRSQWSPALTISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQ 153
Query: 145 KYA 147
KYA
Sbjct: 154 KYA 156
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 103 bits (256), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 INDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV 84
+ D + + GPN+SPY GGV+ + + P YP+K P + F +IYHPNI+ +GS+
Sbjct: 28 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 86
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYRE 144
CLD++ WSP + V + + LL PNP DPL E A + DR Y + +E+ +
Sbjct: 87 CLDILRSQWSPALTISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQ 145
Query: 145 KYA 147
KYA
Sbjct: 146 KYA 148
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 102 bits (255), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 INDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV 84
+ D + + GPN+SPY GGV+ + + P YP+K P + F +IYHPNI+ +GS+
Sbjct: 25 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 83
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYRE 144
CLD++ WSP + V + + LL PNP DPL E A + DR Y + +E+ +
Sbjct: 84 CLDILRSQWSPALTISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQ 142
Query: 145 KYA 147
KYA
Sbjct: 143 KYA 145
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 102 bits (255), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 75/141 (53%), Gaps = 2/141 (1%)
Query: 7 RREMDLMKLMMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSI 66
R DL K S + D + + GP +SPY GGV+ + + P YP+K P +
Sbjct: 8 RELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKV 67
Query: 67 GFVNKIYHPNIDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAA 126
F +IYHPNI+ +GS+CLD++ WSP + V + + LL PNP DPL E A
Sbjct: 68 NFTTRIYHPNINS-NGSICLDILRDQWSPALTISKVL-LSISSLLTDPNPDDPLVPEIAH 125
Query: 127 LLMRDRAAYEQRVKEYREKYA 147
+ DR+ YE +E+ KYA
Sbjct: 126 VYKTDRSRYELSAREWTRKYA 146
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 102 bits (255), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 INDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV 84
+ D + + GPN+SPY GGV+ + + P YP+K P + F +IYHPNI+ +GS+
Sbjct: 28 VGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 86
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYRE 144
CLD++ WSP + V + + LL PNP DPL E A + DR Y + +E+ +
Sbjct: 87 CLDILRSQWSPALTISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ 145
Query: 145 KYA 147
KYA
Sbjct: 146 KYA 148
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 102 bits (255), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 INDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV 84
+ D + + GPN+SPY GGV+ + + P YP+K P + F +IYHPNI+ +GS+
Sbjct: 34 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 92
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYRE 144
CLD++ WSP + V + + LL PNP DPL E A + DR Y + +E+ +
Sbjct: 93 CLDILRSQWSPALTISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQ 151
Query: 145 KYA 147
KYA
Sbjct: 152 KYA 154
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 75/124 (60%), Gaps = 2/124 (1%)
Query: 25 INDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV 84
+ D I + GP++SPY GG++ + V P YP+K+P + F+ K+YHPNI++ +G +
Sbjct: 29 VGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINK-NGVI 87
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYRE 144
CLD++ WSP L V + + LL PNPSDPL+ E A +L ++ +E +E+
Sbjct: 88 CLDILKDQWSPALTLSRVL-LSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTR 146
Query: 145 KYAK 148
YA+
Sbjct: 147 MYAR 150
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 25 INDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV 84
+ D + + GPN+SPY GGV+ + + P YP+K P + F +IYHPNI+ +GS+
Sbjct: 28 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 86
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYRE 144
CLD + WSP + V + + LL PNP DPL E A + DR Y + +E+ +
Sbjct: 87 CLDALRSQWSPALTISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ 145
Query: 145 KYA 147
KYA
Sbjct: 146 KYA 148
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 25 INDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV 84
+ D + + GPN+SPY GGV+ + + P YP+K P + F +IYHPNI+ +GS+
Sbjct: 28 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 86
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYRE 144
CLD++ W P + V + + LL PNP DPL E A + DR Y + +E+ +
Sbjct: 87 CLDILRSQWGPALTISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ 145
Query: 145 KYA 147
KYA
Sbjct: 146 KYA 148
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 75/123 (60%), Gaps = 2/123 (1%)
Query: 26 NDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVC 85
+D ++ F V +GP +SPY G++ + + LPD YP ++P + F+ KIYHPNID + G +C
Sbjct: 31 DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRL-GRIC 89
Query: 86 LDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREK 145
LDV+ WSP + V + + LL PNP+DPL + A +++ + + +E+ +
Sbjct: 90 LDVLKTNWSPALQIRTVL-LSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKL 148
Query: 146 YAK 148
YAK
Sbjct: 149 YAK 151
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 75/123 (60%), Gaps = 2/123 (1%)
Query: 26 NDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVC 85
+D ++ F V +GP +SPY G++ + + LPD YP ++P + F+ KIYHPNID + G +C
Sbjct: 29 DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRL-GRIC 87
Query: 86 LDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREK 145
LDV+ WSP + V + + LL PNP+DPL + A +++ + + +E+ +
Sbjct: 88 LDVLKTNWSPALQIRTVL-LSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKL 146
Query: 146 YAK 148
YAK
Sbjct: 147 YAK 149
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 100 bits (250), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 25 INDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV 84
+ D + + GP +SPY GGV+ + + P YP+K P I F KIYHPNI+ +G++
Sbjct: 27 VGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINA-NGNI 85
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYRE 144
CLD++ WSP L V + + LL NP DPL E A + DR YE +E+ +
Sbjct: 86 CLDILKDQWSPALTLSKVL-LSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTK 144
Query: 145 KYA 147
KYA
Sbjct: 145 KYA 147
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 INDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV 84
+ D + + GP++SPY GGV+ + + P YP+K P + F KIYHPNI+ +GS+
Sbjct: 31 VGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINS-NGSI 89
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYRE 144
CLD++ WSP + V + + LL PNP DPL + A + D+ Y + +E+ +
Sbjct: 90 CLDILRSQWSPALTVSKVL-LSICSLLCDPNPDDPLVPDIAHIYKSDKEKYNRLAREWTQ 148
Query: 145 KYA 147
KYA
Sbjct: 149 KYA 151
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 99.8 bits (247), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 25 INDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV 84
+ D + + GPN+SPY GGV+ + + P YP+K P + F +IYHPNI+ +GS+
Sbjct: 29 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 87
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYRE 144
LD++ WSP + V + + LL PNP DPL E A + DR Y + +E+ +
Sbjct: 88 SLDILRSQWSPALTISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ 146
Query: 145 KYA 147
KYA
Sbjct: 147 KYA 149
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 25 INDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV 84
+ D + + GPN+SPY GGV+ + + P YP+K P + F +IYHPNI+ +GS+
Sbjct: 25 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 83
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYRE 144
LD++ WSP + V + + LL PNP DPL E A + DR Y + +E+ +
Sbjct: 84 SLDILRSQWSPALKISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ 142
Query: 145 KYA 147
KYA
Sbjct: 143 KYA 145
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 25 INDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV 84
+ D + + GPN+SPY GGV+ + + P YP+K P + F +IYHPNI+ +GS+
Sbjct: 28 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 86
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYRE 144
LD++ WSP + V + + LL PNP DPL E A + DR Y + +E+ +
Sbjct: 87 SLDILRSQWSPALTISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ 145
Query: 145 KYA 147
KYA
Sbjct: 146 KYA 148
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 25 INDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV 84
+ D + + GPN+SPY GGV+ + + P YP+K P + F +IYHPNI+ +GS+
Sbjct: 44 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 102
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYRE 144
LD++ WSP + V + + LL PNP DPL E A + DR Y + +E+ +
Sbjct: 103 XLDILRSQWSPALTISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ 161
Query: 145 KYA 147
KYA
Sbjct: 162 KYA 164
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 25 INDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV 84
+ D + + GPN+SPY GGV+ + + P YP+K P + F +IYHPNI+ +GS+
Sbjct: 26 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 84
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYRE 144
LD++ WSP + V + + LL PNP DPL E A + DR Y + +E+ +
Sbjct: 85 SLDILRSQWSPALTISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQ 143
Query: 145 KYA 147
KYA
Sbjct: 144 KYA 146
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 83/149 (55%), Gaps = 6/149 (4%)
Query: 1 MSSPSKRREMDLMKLMMSDYKVEM----INDGIQEFYVHFQGPNESPYHGGVWRIRVELP 56
M++PS+RR M K + D + D I + GP E+P+ G +++ +E
Sbjct: 1 MTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFT 60
Query: 57 DAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNP 116
+ YP K P++ F++K++HPN+ GS+CLD++ WSP +D+ + + LL PNP
Sbjct: 61 EEYPNKPPTVKFISKMFHPNV-YADGSICLDILQNRWSPTYDVAAIL-TSIQSLLDEPNP 118
Query: 117 SDPLNGEAAALLMRDRAAYEQRVKEYREK 145
+ P N AA L +R YE+RV++ E+
Sbjct: 119 NSPANSLAAQLYQENRREYEKRVQQIVEQ 147
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 25 INDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV 84
+ D + + GP +S Y GGV+ + V P YP+K P I F KIYHPNI+ +GS+
Sbjct: 32 VGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS-NGSI 90
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYRE 144
CLD++ WSP + V + + LL PNP DPL + A + D+ Y + +E+ +
Sbjct: 91 CLDILRSQWSPALTVSKVL-LSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQ 149
Query: 145 KYA 147
KYA
Sbjct: 150 KYA 152
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 83/149 (55%), Gaps = 6/149 (4%)
Query: 1 MSSPSKRREMDLMKLMMSDYKVEM----INDGIQEFYVHFQGPNESPYHGGVWRIRVELP 56
M++PS+RR M K + D + D I + GP E+P+ G +++ +E
Sbjct: 4 MTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFT 63
Query: 57 DAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNP 116
+ YP K P++ F++K++HPN+ GS+CLD++ WSP +D+ + + LL PNP
Sbjct: 64 EEYPNKPPTVKFISKMFHPNV-YADGSICLDILQNRWSPTYDVAAIL-TSIQSLLDEPNP 121
Query: 117 SDPLNGEAAALLMRDRAAYEQRVKEYREK 145
+ P N AA L +R YE+RV++ E+
Sbjct: 122 NSPANSLAAQLYQENRREYEKRVQQIVEQ 150
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 25 INDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV 84
+ D + + GP +S Y GGV+ + V P YP+K P I F KIYHPNI+ +GS+
Sbjct: 28 VGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS-NGSI 86
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYRE 144
CLD++ WSP + V + + LL PNP DPL + A + D+ Y + +E+ +
Sbjct: 87 CLDILRSQWSPALTVSKVL-LSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQ 145
Query: 145 KYA 147
KYA
Sbjct: 146 KYA 148
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 25 INDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV 84
+ D + + GP +S Y GGV+ + V P YP+K P I F KIYHPNI+ +GS+
Sbjct: 44 VGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS-NGSI 102
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYRE 144
CLD++ WSP + V + + LL PNP DPL + A + D+ Y + +E+ +
Sbjct: 103 CLDILRSQWSPALTVSKVL-LSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQ 161
Query: 145 KYA 147
KYA
Sbjct: 162 KYA 164
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 74/123 (60%), Gaps = 2/123 (1%)
Query: 26 NDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVC 85
+D ++ F V +GP +SPY G++ + + LPD YP ++P + F+ KIYHPNID + G +
Sbjct: 29 DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRL-GRIS 87
Query: 86 LDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREK 145
LDV+ WSP + V + + LL PNP+DPL + A +++ + + +E+ +
Sbjct: 88 LDVLKTNWSPALQIRTVL-LSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKL 146
Query: 146 YAK 148
YAK
Sbjct: 147 YAK 149
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 96.7 bits (239), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 25 INDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV 84
+ D + + GPN+SPY GGV+ + + P YP+K P + F +IYHP I+ +GS+
Sbjct: 26 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPAINS-NGSI 84
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYRE 144
LD++ WSP + V + + LL PNP DPL E A + DR Y + +E+ +
Sbjct: 85 SLDILRSQWSPALTISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ 143
Query: 145 KYA 147
KYA
Sbjct: 144 KYA 146
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 79/146 (54%), Gaps = 6/146 (4%)
Query: 7 RREMDLMKLMMSDYKVEMINDGIQEFYVH-----FQGPNESPYHGGVWRIRVELPDAYPY 61
+R M ++ + D + + + E +H F GP +PY GG + + +E+P YP+
Sbjct: 4 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 63
Query: 62 KSPSIGFVNKIYHPNIDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLN 121
K P + F K+YHPNI ++G++CLD++ WSP+ L + + L LL P P+DP +
Sbjct: 64 KPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSAL-ISLQALLQSPEPNDPQD 122
Query: 122 GEAAALLMRDRAAYEQRVKEYREKYA 147
E A +RDR ++ + + YA
Sbjct: 123 AEVAQHYLRDRESFNKTAALWTRLYA 148
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 80/150 (53%), Gaps = 6/150 (4%)
Query: 3 SPSKRREMDLMKLMMSDYKVEMINDGIQEFYVH-----FQGPNESPYHGGVWRIRVELPD 57
S +R M ++ + D + + + E +H F GP +PY GG + + +E+P
Sbjct: 1 SSRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPM 60
Query: 58 AYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPS 117
YP+K P + F K+YHPNI ++G++CLD++ WSP+ L + + L LL P P+
Sbjct: 61 EYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSAL-ISLQALLQSPEPN 119
Query: 118 DPLNGEAAALLMRDRAAYEQRVKEYREKYA 147
DP + E A +RDR ++ + + YA
Sbjct: 120 DPQDAEVAQHYLRDRESFNKTAALWTRLYA 149
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 82/149 (55%), Gaps = 6/149 (4%)
Query: 1 MSSPSKRREMDLMKLMMSD----YKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELP 56
MS+P++RR M K M D + D + + GP ++PY G +R+ +E
Sbjct: 1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFD 60
Query: 57 DAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNP 116
+ YP K P + F+++++HPN+ +G +CLD++ W+P +D+ ++ + L PNP
Sbjct: 61 EEYPNKPPHVKFLSEMFHPNV-YANGEICLDILQNRWTPTYDVASIL-TSIQSLFNDPNP 118
Query: 117 SDPLNGEAAALLMRDRAAYEQRVKEYREK 145
+ P N EAA L ++ Y +RVKE EK
Sbjct: 119 ASPANVEAATLFKDHKSQYVKRVKETVEK 147
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 88/154 (57%), Gaps = 6/154 (3%)
Query: 1 MSSPSKRREMDLMKLMMSDYKVEMI----NDGIQEFYVHFQGPNESPYHGGVWRIRVELP 56
MS+P+++R M K + D + ++ I + GP+++P+ GG +++ ++
Sbjct: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60
Query: 57 DAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNP 116
+ YP K P++ FV++++HPNI GS+CLD++ WSP++D+ + + LL PNP
Sbjct: 61 EDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAIL-TSIQSLLCDPNP 118
Query: 117 SDPLNGEAAALLMRDRAAYEQRVKEYREKYAKAE 150
+ P N EAA + + Y +RV++ E+ A+
Sbjct: 119 NSPANSEAARMYSESKREYNRRVRDVVEQSWTAD 152
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 26 NDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVC 85
+D ++ F V +GP +SPY G++ + + LPD YP ++P + F+ KIYHP ID + G +
Sbjct: 29 DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPAIDRL-GRIS 87
Query: 86 LDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREK 145
LDV+ WSP + V + + LL PNP+DPL + A +++ + + +E+ +
Sbjct: 88 LDVLKTNWSPALQIRTVL-LSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKL 146
Query: 146 YAK 148
YAK
Sbjct: 147 YAK 149
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 84/149 (56%), Gaps = 6/149 (4%)
Query: 1 MSSPSKRREMDLMKLMMSDYKVEMIN----DGIQEFYVHFQGPNESPYHGGVWRIRVELP 56
MS+P++RR M K + D V + + I ++ GP +P+ G +++ +E
Sbjct: 1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFS 60
Query: 57 DAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNP 116
+ YP K P++ F++K++HPN+ GS+CLD++ WSP +D+ ++ + LL PNP
Sbjct: 61 EEYPNKPPTVRFLSKMFHPNV-YADGSICLDILQNRWSPTYDVSSIL-TSIQSLLDEPNP 118
Query: 117 SDPLNGEAAALLMRDRAAYEQRVKEYREK 145
+ P N +AA L ++ YE+RV E+
Sbjct: 119 NSPANSQAAQLYQENKREYEKRVSAIVEQ 147
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 93.2 bits (230), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 68/123 (55%), Gaps = 2/123 (1%)
Query: 25 INDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV 84
+ D + + GP +S Y GGV+ + V P YP+K P I F KIYHPNI+ +GS+
Sbjct: 32 VGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS-NGSI 90
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYRE 144
LD++ WSP + V + + LL PNP DPL + A + D+ Y + +E+ +
Sbjct: 91 KLDILRSQWSPALTVSKVL-LSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQ 149
Query: 145 KYA 147
KYA
Sbjct: 150 KYA 152
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 71/123 (57%), Gaps = 6/123 (4%)
Query: 29 IQEFYVHFQ----GPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV 84
+ E Y HF GP+ +PY GG +++ + LP+ YP + P + F+ KIYHPNID++ G +
Sbjct: 26 VPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL-GRI 84
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYRE 144
CLD++ WSP + V + + LL P P DPL+ + A +D+ E +++ +
Sbjct: 85 CLDILKDKWSPALQIRTVL-LSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNK 143
Query: 145 KYA 147
YA
Sbjct: 144 IYA 146
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 71/123 (57%), Gaps = 6/123 (4%)
Query: 29 IQEFYVHFQ----GPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV 84
+ E Y HF GP+ +PY GG +++ + LP+ YP + P + F+ KIYHPNID++ G +
Sbjct: 26 VPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL-GRI 84
Query: 85 CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYRE 144
CLD++ WSP + V + + LL P P DPL+ + A +D+ E +++ +
Sbjct: 85 CLDILKDKWSPALQIRTVL-LSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNK 143
Query: 145 KYA 147
YA
Sbjct: 144 IYA 146
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 68/127 (53%), Gaps = 1/127 (0%)
Query: 22 VEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMS 81
+++ I + GP +PY GG + + + +P YPY P + FV KI+HPNI +
Sbjct: 67 AQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQT 126
Query: 82 GSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKE 141
G++CLD++ WSP + + + +L P P+DP + E A +++ + + Q K
Sbjct: 127 GAICLDILKHEWSPALTIRTAL-LSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKL 185
Query: 142 YREKYAK 148
+ E +AK
Sbjct: 186 WTETFAK 192
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 32 FYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVINQ 91
F+V GP +SP+ GG +++ + LP+ YP +P + F+ KIYHPN+D++ G +CLD++
Sbjct: 37 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL-GRICLDILKD 95
Query: 92 TWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKYA 147
WSP + V + + LL PNP DPL + A + A + + + YA
Sbjct: 96 KWSPALQIRTVL-LSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 150
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 32 FYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVINQ 91
F+V GP +SP+ GG +++ + LP+ YP +P + F+ KIYHPN+D++ G +CLD++
Sbjct: 35 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL-GRICLDILKD 93
Query: 92 TWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKYA 147
WSP + V + + LL PNP DPL + A + A + + + YA
Sbjct: 94 KWSPALQIRTVL-LSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 148
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 32 FYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVINQ 91
F+V GP +SP+ GG +++ + LP+ YP +P + F+ KIYHPN+D++ G +CLD++
Sbjct: 38 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL-GRICLDILKD 96
Query: 92 TWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKYA 147
WSP + V + + LL PNP DPL + A + A + + + YA
Sbjct: 97 KWSPALQIRTVL-LSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 151
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 32 FYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVINQ 91
F+V GP +SP+ GG +++ + LP+ YP +P + F+ KIYHPN+D++ G +CLD++
Sbjct: 33 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL-GRICLDILKD 91
Query: 92 TWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKYA 147
WSP + V + + LL PNP DPL + A + A + + + YA
Sbjct: 92 KWSPALQIRTVL-LSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 146
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 32 FYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVINQ 91
F+V GP +SP+ GG +++ + LP+ YP +P + F+ KIYHPN+D++ G +CLD++
Sbjct: 40 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL-GRICLDILKD 98
Query: 92 TWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKYA 147
WSP + V + + LL PNP DPL + A + A + + + YA
Sbjct: 99 KWSPALQIRTVL-LSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 153
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 74/151 (49%), Gaps = 15/151 (9%)
Query: 11 DLMKLMMSDYKVEMINDGIQEFYVHFQ------------GPNESPYHGGVWRIRVELPDA 58
+L++L +E N+ +QE H + GP +PY GG + + + +P+
Sbjct: 24 ELLRLQKELKDIE--NENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPND 81
Query: 59 YPYKSPSIGFVNKIYHPNIDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSD 118
YPY P I FV KI+HPNI +G++CLDV+ WSP + + + LL P P D
Sbjct: 82 YPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTAL-LSIQALLSDPQPDD 140
Query: 119 PLNGEAAALLMRDRAAYEQRVKEYREKYAKA 149
P + E A + + A + + + + +A
Sbjct: 141 PQDAEVAKMYKENHALFVKTASVWTKTFATG 171
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 78/150 (52%), Gaps = 5/150 (3%)
Query: 1 MSSPSKRREMDLMKLMMS---DYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPD 57
+S+ +KR + +L + + + D I E+ GP S Y GGV+ + +
Sbjct: 46 LSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTP 105
Query: 58 AYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPS 117
YP+K P + F +IYH NI+ G +CLD++ WSP + V + + LL NP+
Sbjct: 106 EYPFKPPKVTFRTRIYHCNINSQ-GVICLDILKDNWSPALTISKVL-LSICSLLTDCNPA 163
Query: 118 DPLNGEAAALLMRDRAAYEQRVKEYREKYA 147
DPL G A M +RA +++ +++ ++YA
Sbjct: 164 DPLVGSIATQYMTNRAEHDRMARQWTKRYA 193
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 5/149 (3%)
Query: 2 SSPSKRREMDLMKLMMS---DYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDA 58
S+ +KR + +L ++ + + D I E+ GP S Y GGV+ + +
Sbjct: 2 STSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPD 61
Query: 59 YPYKSPSIGFVNKIYHPNIDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSD 118
YP+K P + F +IYH NI+ G +CLD++ WSP + V + + LL NP+D
Sbjct: 62 YPFKPPKVTFRTRIYHCNINSQ-GVICLDILKDNWSPALTISKVL-LSICSLLTDCNPAD 119
Query: 119 PLNGEAAALLMRDRAAYEQRVKEYREKYA 147
PL G A M +RA +++ +++ ++YA
Sbjct: 120 PLVGSIATQYMTNRAEHDRMARQWTKRYA 148
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 83/151 (54%), Gaps = 9/151 (5%)
Query: 3 SPSKRREMDLMKLMMS-DYKVEMINDG--IQEFYVHFQGPNESPYHGGVWRIRVELPDAY 59
S SKR + +L L+MS D + DG + ++ GP ++ Y +++ +E P Y
Sbjct: 9 SVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDY 68
Query: 60 PYKSPSIGFVNKIYHPNIDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDP 119
PYK P + F +HPN+D+ SG++CLD++ + W+ +D+ + + L LL PN + P
Sbjct: 69 PYKPPVVKFTTPCWHPNVDQ-SGNICLDILKENWTASYDVRTIL-LSLQSLLGEPNNASP 126
Query: 120 LNGEAAALLMRDRAAYEQRVKEYREKYAKAE 150
LN +AA + ++ Y+ K EKY A+
Sbjct: 127 LNAQAAD-MWSNQTEYK---KVLHEKYKTAQ 153
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 69/129 (53%), Gaps = 1/129 (0%)
Query: 21 KVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEM 80
KV+++++ E GP ++PY GG +++ +++P+ YP+ P + F+ KI+HPNI +
Sbjct: 81 KVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSV 140
Query: 81 SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVK 140
+G++CLD++ W+ L V LL P DP + A ++ ++Q +
Sbjct: 141 TGAICLDILKDQWAAAMTLRTVLLSLQ-ALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 199
Query: 141 EYREKYAKA 149
+ YA A
Sbjct: 200 LWAHVYAGA 208
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 70/127 (55%), Gaps = 8/127 (6%)
Query: 27 DGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVCL 86
D + + G +PY GV+++ V +P+ YP++ P I F+ IYHPNID +G +CL
Sbjct: 31 DQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDS-AGRICL 89
Query: 87 DVI----NQTWSPMFDLVNVFEVFLPQLLLY-PNPSDPLNGEAAALLMRDRAAYEQRVKE 141
DV+ W P ++ V QLL+ PNP DPL + ++ ++ A+ + ++
Sbjct: 90 DVLKLPPKGAWRPSLNIATVLTSI--QLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQ 147
Query: 142 YREKYAK 148
+ EK+A+
Sbjct: 148 WTEKHAR 154
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 69/129 (53%), Gaps = 1/129 (0%)
Query: 21 KVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEM 80
KV+++++ E GP ++PY GG +++ +++P+ YP+ P + F+ KI+HPNI +
Sbjct: 45 KVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSV 104
Query: 81 SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVK 140
+G++CLD++ W+ L V LL P DP + A ++ ++Q +
Sbjct: 105 TGAICLDILKDQWAAAMTLRTVLLSLQ-ALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 163
Query: 141 EYREKYAKA 149
+ YA A
Sbjct: 164 LWAHVYAGA 172
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 69/129 (53%), Gaps = 1/129 (0%)
Query: 21 KVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEM 80
KV+++++ E GP ++PY GG +++ +++P+ YP+ P + F+ KI+HPNI +
Sbjct: 29 KVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSV 88
Query: 81 SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVK 140
+G++CLD++ W+ L V LL P DP + A ++ ++Q +
Sbjct: 89 TGAICLDILKDQWAAAMTLRTVLLSLQ-ALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 147
Query: 141 EYREKYAKA 149
+ YA A
Sbjct: 148 LWAHVYAGA 156
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 69/129 (53%), Gaps = 1/129 (0%)
Query: 21 KVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEM 80
KV+++++ E GP ++PY GG +++ +++P+ YP+ P + F+ KI+HPNI +
Sbjct: 32 KVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSV 91
Query: 81 SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVK 140
+G++CLD++ W+ L V LL P DP + A ++ ++Q +
Sbjct: 92 TGAICLDILKDQWAAAMTLRTVLLSLQ-ALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 150
Query: 141 EYREKYAKA 149
+ YA A
Sbjct: 151 LWAHVYAGA 159
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 69/129 (53%), Gaps = 1/129 (0%)
Query: 21 KVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEM 80
KV+++++ E GP ++PY GG +++ +++P+ YP+ P + F+ KI+HPNI +
Sbjct: 30 KVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSV 89
Query: 81 SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVK 140
+G++CLD++ W+ L V LL P DP + A ++ ++Q +
Sbjct: 90 TGAICLDILKDQWAAAMTLRTVLLSLQ-ALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 148
Query: 141 EYREKYAKA 149
+ YA A
Sbjct: 149 LWAHVYAGA 157
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 72/144 (50%), Gaps = 3/144 (2%)
Query: 11 DLMKLMMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVN 70
++ K M +++ +++ + P+ PY G +RI + P YP+K P I F
Sbjct: 15 EIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKT 74
Query: 71 KIYHPNIDEMSGSVCLDVIN-QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLM 129
KIYHPNIDE G VCL VI+ + W P V + + L+ P P PL + A
Sbjct: 75 KIYHPNIDE-KGQVCLPVISAENWKPATKTDQVIQSLI-ALVNDPQPEHPLRADLAEEYS 132
Query: 130 RDRAAYEQRVKEYREKYAKAEDIE 153
+DR + + +E+ +KY + ++
Sbjct: 133 KDRKKFCKNAEEFTKKYGEKRPVD 156
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 72/144 (50%), Gaps = 3/144 (2%)
Query: 11 DLMKLMMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVN 70
++ K M +++ +++ + P+ PY G +RI + P YP+K P I F
Sbjct: 13 EIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKT 72
Query: 71 KIYHPNIDEMSGSVCLDVIN-QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLM 129
KIYHPNIDE G VCL VI+ + W P V + + L+ P P PL + A
Sbjct: 73 KIYHPNIDE-KGQVCLPVISAENWKPATKTDQVIQSLI-ALVNDPQPEHPLRADLAEEYS 130
Query: 130 RDRAAYEQRVKEYREKYAKAEDIE 153
+DR + + +E+ +KY + ++
Sbjct: 131 KDRKKFCKNAEEFTKKYGEKRPVD 154
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Query: 39 PNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVINQTWSPMFD 98
P+E Y+ G ++ + YP + P + + KI+HPNID + G+VCL+++ + WSP D
Sbjct: 72 PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNID-LKGNVCLNILREDWSPALD 130
Query: 99 LVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVK 140
L ++ L L L PNP+DPLN +AA LL + + V+
Sbjct: 131 LQSIITGLL-FLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVR 171
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 81/149 (54%), Gaps = 6/149 (4%)
Query: 6 KRREMDLMKLMMS-DYKVEMI--NDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYK 62
KR + +LM LMMS D + +D + ++ G + Y +++ +E P YPY
Sbjct: 33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYN 92
Query: 63 SPSIGFVNKIYHPNIDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNG 122
+P++ F+ YHPN+D G++ LD++ + WS ++D+ + + + LL PN PLN
Sbjct: 93 APTVKFLTPCYHPNVD-TQGNISLDILKEKWSALYDVRTIL-LSIQSLLGEPNIDSPLNT 150
Query: 123 EAAALLMRDRAAYEQRVKEYREKYAKAED 151
AA L ++ A+++ ++E K +++
Sbjct: 151 HAAE-LWKNPTAFKKYLQETYSKQVTSQE 178
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 39 PNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVINQTWSPMFD 98
P+E Y G + ++ YP+ P + +YHPNID + G+VCL+++ + W P+
Sbjct: 43 PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNID-LEGNVCLNILREDWKPVL- 100
Query: 99 LVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVK 140
+N L L L PNP DPLN EAA +L +R +EQ V+
Sbjct: 101 TINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 142
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 29 IQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDV 88
+ + V +GP +PY GG++R+++ L +P P F+ KI+HPN+ +G +C++V
Sbjct: 42 LTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVG-ANGEICVNV 100
Query: 89 INQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKYA 147
+ + W+ + +V + + LL++PNP LN EA LL+ + Y R + E +
Sbjct: 101 LKRDWTAELGIRHVL-LTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG 158
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 39 PNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVI-NQTWSPMF 97
P++ PYH + +R+ P YP+K P I F KIYHPN+DE +G +CL +I ++ W P
Sbjct: 40 PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE-NGQICLPIISSENWKPCT 98
Query: 98 DLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKYA 147
V E L L+ PN +PL + A LL ++ + + +E+ ++
Sbjct: 99 KTCQVLEA-LNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFG 147
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 39 PNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVI-NQTWSPMF 97
P++ PYH + +R+ P YP+K P I F KIYHPN+DE +G +CL +I ++ W P
Sbjct: 43 PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE-NGQICLPIISSENWKPCT 101
Query: 98 DLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKYA 147
V E L L+ PN +PL + A LL ++ + + +E+ ++
Sbjct: 102 KTCQVLEA-LNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFG 150
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 72.8 bits (177), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 39 PNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVINQTWSPMFD 98
P+E Y G + ++ YP+ P + +YHPNID + G+V L+++ + W P+
Sbjct: 63 PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNID-LEGNVALNILREDWKPVLT 121
Query: 99 LVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVK 140
+N L L L PNP DPLN EAA +L +R +EQ V+
Sbjct: 122 -INSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 162
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 7/117 (5%)
Query: 39 PNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVINQ------T 92
P+E Y GG ++ E+PDAY P + + KI+HPNI E +G +CL ++ +
Sbjct: 53 PDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITE-TGEICLSLLREHSIDGTG 111
Query: 93 WSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKYAKA 149
W+P L +V N DPLN EAA +RD+ + +V +Y ++YA++
Sbjct: 112 WAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYARS 168
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 7/116 (6%)
Query: 39 PNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVINQ------T 92
P+E Y GG ++ E+PDAY P + + KI+HPNI E +G +CL ++ +
Sbjct: 53 PDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITE-TGEICLSLLREHSIDGTG 111
Query: 93 WSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKYAK 148
W+P L +V N DPLN EAA +RD+ + +V +Y ++YA+
Sbjct: 112 WAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYAR 167
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 4/122 (3%)
Query: 29 IQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDV 88
+Q++ G + + GGV+ I VE P+ YP K P + F YHPN+ SG++CL +
Sbjct: 40 LQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNV-YPSGTICLSI 98
Query: 89 IN--QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKY 146
+N Q W P L + + + LL PNP+ P A R++A Y+++V ++Y
Sbjct: 99 LNEDQDWRPAITLKQIV-LGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQY 157
Query: 147 AK 148
+K
Sbjct: 158 SK 159
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 62/112 (55%), Gaps = 4/112 (3%)
Query: 38 GPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVI--NQTWSP 95
G +P+ GG++++R+ D YP P F ++HPN+ SG+VCL ++ ++ W P
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAP-SGTVCLSILEEDKDWRP 108
Query: 96 MFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKYA 147
+ + + + +LL PN DP EA + ++R YE+RV+ +K+A
Sbjct: 109 AITIKQIL-LGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 4/122 (3%)
Query: 29 IQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDV 88
+Q++ G + + GGV+ I VE P+ YP K P + F YHPN+ SG++CL +
Sbjct: 38 LQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNV-YPSGTICLSI 96
Query: 89 IN--QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKY 146
+N Q W P L + + + LL PNP+ P A R++A Y+++V ++Y
Sbjct: 97 LNEDQDWRPAITLKQIV-LGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQY 155
Query: 147 AK 148
+K
Sbjct: 156 SK 157
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 62/112 (55%), Gaps = 4/112 (3%)
Query: 38 GPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVI--NQTWSP 95
G +P+ GG++++R+ D YP P F ++HPN+ SG+VCL ++ ++ W P
Sbjct: 49 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 107
Query: 96 MFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKYA 147
+ + + + +LL PN DP EA + ++R YE+RV+ +K+A
Sbjct: 108 AITIKQIL-LGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 158
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 62/112 (55%), Gaps = 4/112 (3%)
Query: 38 GPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVI--NQTWSP 95
G +P+ GG++++R+ D YP P F ++HPN+ SG+VCL ++ ++ W P
Sbjct: 48 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 106
Query: 96 MFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKYA 147
+ + + + +LL PN DP EA + ++R YE+RV+ +K+A
Sbjct: 107 AITIKQIL-LGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 157
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 62/112 (55%), Gaps = 4/112 (3%)
Query: 38 GPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVI--NQTWSP 95
G +P+ GG++++R+ D YP P F ++HPN+ SG+VCL ++ ++ W P
Sbjct: 49 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 107
Query: 96 MFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKYA 147
+ + + + +LL PN DP EA + ++R YE+RV+ +K+A
Sbjct: 108 AITIKQIL-LGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 158
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 62/112 (55%), Gaps = 4/112 (3%)
Query: 38 GPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVI--NQTWSP 95
G +P+ GG++++R+ D YP P F ++HPN+ SG+VCL ++ ++ W P
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 108
Query: 96 MFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKYA 147
+ + + + +LL PN DP EA + ++R YE+RV+ +K+A
Sbjct: 109 AITIKQIL-LGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 62/112 (55%), Gaps = 4/112 (3%)
Query: 38 GPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVI--NQTWSP 95
G +P+ GG++++R+ D YP P F ++HPN+ SG+VCL ++ ++ W P
Sbjct: 47 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 105
Query: 96 MFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKYA 147
+ + + + +LL PN DP EA + ++R YE+RV+ +K+A
Sbjct: 106 AITIKQIL-LGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 62/112 (55%), Gaps = 4/112 (3%)
Query: 38 GPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVI--NQTWSP 95
G +P+ GG++++R+ D YP P F ++HPN+ SG+VCL ++ ++ W P
Sbjct: 52 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 110
Query: 96 MFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKYA 147
+ + + + +LL PN DP EA + ++R YE+RV+ +K+A
Sbjct: 111 AITIKQIL-LGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 161
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 63/110 (57%), Gaps = 4/110 (3%)
Query: 36 FQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFV-NKIYHPNIDEMSGSVCLDVIN-QTW 93
GP+++PY +RI +E+P +YP P I F+ N I H N+ +G +CL+++ + W
Sbjct: 54 ISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEW 113
Query: 94 SPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALL-MRDRAAYEQRVKEY 142
+P++DL++ +LL P PL+ + A++ D +AY+ VK +
Sbjct: 114 TPVWDLLHCVHAVW-RLLREPVCDSPLDVDIGAIIRCGDMSAYQGIVKYF 162
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 4/112 (3%)
Query: 38 GPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVI--NQTWSP 95
G +P+ GG++++R+ D YP P F ++HP + SG+VCL ++ ++ W P
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYP-SGTVCLSILEEDKDWRP 108
Query: 96 MFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKYA 147
+ + + + +LL PN DP EA + ++R YE+RV+ +K+A
Sbjct: 109 AITIKQIL-LGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 4/112 (3%)
Query: 38 GPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVI--NQTWSP 95
G +P+ GG++++R+ D YP P F ++HPN+ SG+VCL ++ ++ W P
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 108
Query: 96 MFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKYA 147
+ + + + +LL PN P EA + ++R YE+RV+ +K+A
Sbjct: 109 AITIKQIL-LGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 67/125 (53%), Gaps = 9/125 (7%)
Query: 18 SDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNI 77
SD ++++N + V G ++ + GG++++ + P+ YP + P F ++HPN+
Sbjct: 38 SDGGLDLMN-----WKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNV 92
Query: 78 DEMSGSVCLDVIN--QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAY 135
SG+VCL ++N + W P + + + + LL PN + P EA + +D+ Y
Sbjct: 93 YP-SGTVCLSILNEEEGWKPAITIKQIL-LGIQDLLDDPNIASPAQTEAYTMFKKDKVEY 150
Query: 136 EQRVK 140
E+RV+
Sbjct: 151 EKRVR 155
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 4/112 (3%)
Query: 38 GPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVI--NQTWSP 95
G +P+ GG++++R+ D YP P F ++HPN+ SG+VCL ++ ++ W P
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 108
Query: 96 MFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKYA 147
+ + + + +LL PN P EA + ++R YE+RV+ +K+A
Sbjct: 109 AITIKQIL-LGIQELLNEPNIQAPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 62/110 (56%), Gaps = 4/110 (3%)
Query: 36 FQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFV-NKIYHPNIDEMSGSVCLDVIN-QTW 93
GP+++PY +RI +E+P +YP P I F+ N I H N+ +G +CL+++ + W
Sbjct: 54 ISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICLNILKPEEW 113
Query: 94 SPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALL-MRDRAAYEQRVKEY 142
+P++DL++ +LL P PL+ + ++ D +AY+ VK +
Sbjct: 114 TPVWDLLHCVHAVW-RLLREPVSDSPLDVDIGNIIRCGDMSAYQGIVKYF 162
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 62/110 (56%), Gaps = 4/110 (3%)
Query: 36 FQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFV-NKIYHPNIDEMSGSVCLDVIN-QTW 93
GP+++PY +RI +E+P +YP P I F+ N I H N+ +G +CL+++ + W
Sbjct: 54 ISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEW 113
Query: 94 SPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALL-MRDRAAYEQRVKEY 142
+P++DL++ +LL P PL+ + ++ D +AY+ VK +
Sbjct: 114 TPVWDLLHCVHAVW-RLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKYF 162
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 4/112 (3%)
Query: 38 GPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVI--NQTWSP 95
G +P+ GG++++R+ D YP P F ++HPN+ SG+V L ++ ++ W P
Sbjct: 47 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVSLSILEEDKDWRP 105
Query: 96 MFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKYA 147
+ + + + +LL PN DP EA + ++R YE+RV+ +K+A
Sbjct: 106 AITIKQIL-LGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 4/112 (3%)
Query: 38 GPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVI--NQTWSP 95
G +P+ GG++++R+ D YP P F ++HPN+ SG+V L ++ ++ W P
Sbjct: 47 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVXLSILEEDKDWRP 105
Query: 96 MFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKYA 147
+ + + + +LL PN DP EA + ++R YE+RV+ +K+A
Sbjct: 106 AITIKQIL-LGIQELLNEPNIQDPAQAEAYTIYXQNRVEYEKRVRAQAKKFA 156
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 80/150 (53%), Gaps = 16/150 (10%)
Query: 6 KRREMDLMKLMMSDYKVEMINDG-IQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSP 64
K++ D+ ++ + + +++D I ++ V GP ++ Y GG ++ ++ P YP K P
Sbjct: 9 KKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPP 68
Query: 65 SIGFVNKIYHPNIDEMSGSVCLDVIN-------------QTWSPMFDLVNVFEVFLPQLL 111
+ F+++I+HPNID+ G+VC+ +++ + W P+ + + + + +L
Sbjct: 69 KMKFISEIWHPNIDK-EGNVCISILHDPGDDKWGYERPEERWLPVHTVETIL-LSVISML 126
Query: 112 LYPNPSDPLNGEAAALLMRDRAAYEQRVKE 141
PN P N +AA + + A ++++V +
Sbjct: 127 TDPNFESPANVDAAKMQRENYAEFKKKVAQ 156
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 75/158 (47%), Gaps = 22/158 (13%)
Query: 6 KRREMDLMKLMMSDYKVEMINDG-IQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSP 64
+R+ +L K + + +I+D + + V GP ++ Y GGV++ + P YP + P
Sbjct: 23 RRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPP 82
Query: 65 SIGFVNKIYHPNIDEMSGSVCLDVIN-------------QTWSPMFDLVNVFEVFLPQLL 111
+ F+ +I+HPN+D+ +G VC+ +++ + W P+ V + + +L
Sbjct: 83 KMKFITEIWHPNVDK-NGDVCISILHEPGEDKYGYEKPEERWLPIH-TVETIMISVISML 140
Query: 112 LYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKYAKA 149
PN P N +AA DR E++ K A+
Sbjct: 141 ADPNGDSPANVDAAKEWREDRNG------EFKRKVARC 172
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 72/137 (52%), Gaps = 6/137 (4%)
Query: 11 DLMKLMMSDYK---VEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIG 67
D L ++YK + +++ + E+ V +G S + G V+++ + Y Y P +
Sbjct: 31 DFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVK 90
Query: 68 FVNKIYHPNIDEMSGSVCLDVIN--QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAA 125
F+ +HPN+D +G C+D ++ + W+ + L ++ + L +L P +P+N EAA
Sbjct: 91 FITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSIL-LALQVMLSNPVLENPVNLEAA 149
Query: 126 ALLMRDRAAYEQRVKEY 142
+L++D + Y ++ +
Sbjct: 150 RILVKDESLYRTILRLF 166
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 74/146 (50%), Gaps = 21/146 (14%)
Query: 1 MSSPSKRREM-----DLMKLMMSDYKVEMINDG-IQEFYVHFQGPNESPYHGGVWRIRVE 54
M SPS ++ + L + + ++V ++++G + + V GP + Y GG ++ R++
Sbjct: 3 MGSPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLK 62
Query: 55 LPDAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVIN-------------QTWSPMFDLVN 101
P YPY P+ F+ K++HPNI E +G VC+ +++ + W+P ++
Sbjct: 63 FPIDYPYSPPAFRFLTKMWHPNIYE-TGDVCISILHPPVDDPQSGELPSERWNPTQNVRT 121
Query: 102 VFEVFLPQLLLYPNPSDPLNGEAAAL 127
+ + LL PN P N +A+ +
Sbjct: 122 ILLSVI-SLLNEPNTFSPANVDASVM 146
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 73/145 (50%), Gaps = 21/145 (14%)
Query: 2 SSPSKRREM-----DLMKLMMSDYKVEMINDG-IQEFYVHFQGPNESPYHGGVWRIRVEL 55
SPS ++ + L + + ++V ++++G + + V GP + Y GG ++ R++
Sbjct: 1 GSPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKF 60
Query: 56 PDAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVIN-------------QTWSPMFDLVNV 102
P YPY P+ F+ K++HPNI E +G VC+ +++ + W+P ++ +
Sbjct: 61 PIDYPYSPPAFRFLTKMWHPNIYE-TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTI 119
Query: 103 FEVFLPQLLLYPNPSDPLNGEAAAL 127
+ LL PN P N +A+ +
Sbjct: 120 LLSVI-SLLNEPNTFSPANVDASVM 143
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 20/158 (12%)
Query: 1 MSSPSKRREMDLMKLMMSDYKVEMI-----NDGIQEFYVHFQGPNESPYHGGVWRIRVEL 55
MS +++R + ++ ++ D ++ + I + QGP ++PY GV+ ++E
Sbjct: 1 MSKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEF 60
Query: 56 PDAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVIN-------------QTWSPMFDLVNV 102
P YP P + F I HPNI +G VC+ +++ + WSP+ + +
Sbjct: 61 PKDYPLSPPKLTFTPSILHPNIYP-NGEVCISILHSPGDDPNMYELAEERWSPVQSVEKI 119
Query: 103 FEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVK 140
+ +L PN N +A L +R +E++VK
Sbjct: 120 LLSVM-SMLSEPNIESGANIDACILWRDNRPEFERQVK 156
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 70/158 (44%), Gaps = 27/158 (17%)
Query: 13 MKLMMSDYKVEMIN--DGIQ----------EFYVHFQGPNESPYHGGVWRIRVELPDAYP 60
+K +M++YK +N +GI E+ GP ++ + GV+ + P YP
Sbjct: 5 LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYP 64
Query: 61 YKSPSIGFVNKIYHPNIDEMSGSVCLDVIN-------------QTWSPMFDLVNVFEVFL 107
P + F +++HPNI G VC+ +++ + WSP+ + + + +
Sbjct: 65 LSPPKMRFTCEMFHPNIYP-DGRVCISILHAPGDDPMGYESSAERWSPVQSVEKIL-LSV 122
Query: 108 PQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREK 145
+L PN N +A+ + DR + + K+ +K
Sbjct: 123 VSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 160
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 70/158 (44%), Gaps = 27/158 (17%)
Query: 13 MKLMMSDYKVEMIN--DGIQ----------EFYVHFQGPNESPYHGGVWRIRVELPDAYP 60
+K +M++YK +N +GI E+ GP ++ + GV+ + P YP
Sbjct: 9 LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYP 68
Query: 61 YKSPSIGFVNKIYHPNIDEMSGSVCLDVIN-------------QTWSPMFDLVNVFEVFL 107
P + F +++HPNI G VC+ +++ + WSP+ + + + +
Sbjct: 69 LSPPKMRFTCEMFHPNIYP-DGRVCISILHAPGDDPMGYESSAERWSPVQSVEKIL-LSV 126
Query: 108 PQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREK 145
+L PN N +A+ + DR + + K+ +K
Sbjct: 127 VSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 164
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 70/158 (44%), Gaps = 27/158 (17%)
Query: 13 MKLMMSDYKVEMIN--DGIQ----------EFYVHFQGPNESPYHGGVWRIRVELPDAYP 60
+K +M++YK +N +GI E+ GP ++ + GV+ + P YP
Sbjct: 11 LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYP 70
Query: 61 YKSPSIGFVNKIYHPNIDEMSGSVCLDVIN-------------QTWSPMFDLVNVFEVFL 107
P + F +++HPNI G VC+ +++ + WSP+ + + + +
Sbjct: 71 LSPPKMRFTCEMFHPNIYP-DGRVCISILHAPGDDPMGYESSAERWSPVQSVEKIL-LSV 128
Query: 108 PQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREK 145
+L PN N +A+ + DR + + K+ +K
Sbjct: 129 VSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 166
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 70/158 (44%), Gaps = 27/158 (17%)
Query: 13 MKLMMSDYKVEMIN--DGIQ----------EFYVHFQGPNESPYHGGVWRIRVELPDAYP 60
+K +M++YK +N +GI E+ GP ++ + GV+ + P YP
Sbjct: 8 LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYP 67
Query: 61 YKSPSIGFVNKIYHPNIDEMSGSVCLDVIN-------------QTWSPMFDLVNVFEVFL 107
P + F +++HPNI G VC+ +++ + WSP+ + + + +
Sbjct: 68 LSPPKMRFTCEMFHPNIYP-DGRVCISILHAPGDDPMGYESSAERWSPVQSVEKIL-LSV 125
Query: 108 PQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREK 145
+L PN N +A+ + DR + + K+ +K
Sbjct: 126 VSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 163
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Query: 26 NDGIQEFYVHFQGPNESPYHGG--VWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGS 83
D I + + + P +S Y G +++ V D YP++ P++ FV +Y P + G
Sbjct: 46 TDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLV-TGEGG 104
Query: 84 VCLDVINQTWSPMFDLVNVFEVFLPQLL--LYPNPSDPLNGEAAALLMRDRAAYEQRVKE 141
+C ++N W+P +V ++ L ++ D +N EA L + + RV+
Sbjct: 105 ICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVRR 164
Query: 142 YR 143
R
Sbjct: 165 GR 166
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Query: 1 MSSPSKRREMDLMKLMMS-----DYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVEL 55
M+S KR + +L+ L + + + I ++ V +G + Y G +++ +
Sbjct: 20 MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKF 79
Query: 56 PDAYPYKSPSIGFV--NKIYHPNIDEMSGSVCLDVINQTWSPMFDLVNV 102
YP+ SP + F N HP++ +G +CL ++ + WSP + +V
Sbjct: 80 SSRYPFDSPQVMFTGENIPVHPHVYS-NGHICLSILTEDWSPALSVQSV 127
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 19/121 (15%)
Query: 2 SSPSKRREMDLMKLMMSDY-----------KVEMINDGIQEFYVHFQGPNESPYHGGVWR 50
S+ SKR + + DY E + I E++ +GP +PY GG +
Sbjct: 5 STSSKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYH 64
Query: 51 IRVELPDAYPYKSPSIGFVNKIYHPNID-EMSGSVCLDVIN---QTWSPMFDLVNVFEVF 106
++ P +P+K PSI + PN + + +CL + + TW+P + + +
Sbjct: 65 GKLIFPREFPFKPPSIYMIT----PNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGL 120
Query: 107 L 107
L
Sbjct: 121 L 121
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%)
Query: 27 DGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVCL 86
I+ + V + G + Y V++I++ PD YP K P + F+ K +G +CL
Sbjct: 47 SNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICL 106
Query: 87 DVINQTWSPMFDL 99
V+ ++P +
Sbjct: 107 SVLGDDYNPSLSI 119
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 36/73 (49%)
Query: 27 DGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVCL 86
+ I+ + V + G + Y V+++++ PD YP K P + F+ K +G +CL
Sbjct: 33 NNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICL 92
Query: 87 DVINQTWSPMFDL 99
++ ++P +
Sbjct: 93 SLLGDDYNPSLSI 105
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 34 VHFQGPNESPYHGGVWRIRVELPDAYPYKSP-----SIGFVNKIYHPNIDEMSGSVCLDV 88
V GP ++PY G + V P YP P + G + ++PN+ G VCL +
Sbjct: 114 VLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYN-DGKVCLSI 172
Query: 89 INQTW 93
+N TW
Sbjct: 173 LN-TW 176
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 38 GPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV 84
GP + Y ++ ++VE YP PS+ FV KI I+ SG V
Sbjct: 52 GPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 98
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 38 GPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV 84
GP + Y ++ ++VE YP PS+ FV KI I+ SG V
Sbjct: 46 GPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 92
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 38 GPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV 84
GP + Y ++ ++VE YP PS+ FV KI I+ SG V
Sbjct: 47 GPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 93
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 38 GPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV 84
GP + Y ++ ++VE YP PS+ FV KI I+ SG V
Sbjct: 57 GPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 103
>pdb|1ZUO|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
pdb|1ZUO|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
Length = 186
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 13/97 (13%)
Query: 20 YKVEMINDGIQEFYVHFQGPN-ESPYHGGVWRIR-----------VELPDAYPYKSPSIG 67
Y VE+IND + +++V Q + +SP H + ++ D +P+ P +
Sbjct: 50 YSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVR 109
Query: 68 FVNKIYHPNIDEMSGSVCLDVIN-QTWSPMFDLVNVF 103
V + G++C++++ Q WS + + +V
Sbjct: 110 VVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVI 146
>pdb|1QRJ|B Chain B, Solution Structure Of Htlv-I Capsid Protein
Length = 199
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 41 ESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVINQTWSPMFDLV 100
E PYH V R+ + L + P +P + + + N ++ + L T SP+ D++
Sbjct: 126 EEPYHAFVERLNIALDNGLPEGTPKDPILRSLAYSNANKECQKL-LQARGHTNSPLGDML 184
Query: 101 NVFEVFLPQ 109
+ + P+
Sbjct: 185 RACQTWTPK 193
>pdb|1NH6|A Chain A, Structure Of S. Marcescens Chitinase A, E315l, Complex
With Hexasaccharide
Length = 540
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 91 QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRD-RAAYEQRVKEYREKYAKA 149
QTW FD V++ +F PN P +GE LLM++ RA +Q E KY
Sbjct: 279 QTWK-FFDGVDIDWLFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELT 337
Query: 150 EDIEAA 155
I A
Sbjct: 338 SAISAG 343
>pdb|1CTN|A Chain A, Crystal Structure Of A Bacterial Chitinase At 2.3
Angstroms Resolution
Length = 540
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 91 QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRD-RAAYEQRVKEYREKYAKA 149
QTW FD V++ F PN P +GE LLM++ RA +Q E KY
Sbjct: 279 QTWK-FFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSTETGRKYELT 337
Query: 150 EDIEAA 155
I A
Sbjct: 338 SAISAG 343
>pdb|2WK2|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline Dithioamide
Length = 540
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 91 QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRD-RAAYEQRVKEYREKYAKA 149
QTW FD V++ F PN P +GE LLM++ RA +Q E KY
Sbjct: 279 QTWK-FFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGRKYELT 337
Query: 150 EDIEAA 155
I A
Sbjct: 338 SAISAG 343
>pdb|1EIB|A Chain A, Crystal Structure Of Chitinase A Mutant D313a Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 91 QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRD-RAAYEQRVKEYREKYAKA 149
QTW FD V++ F PN P +GE LLM++ RA +Q E KY
Sbjct: 279 QTWK-FFDGVDIAWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELT 337
Query: 150 EDIEAA 155
I A
Sbjct: 338 SAISAG 343
>pdb|2WLY|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline.
pdb|2WLZ|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline.
pdb|2WM0|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline Thioamide
Length = 548
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 91 QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRD-RAAYEQRVKEYREKYAKA 149
QTW FD V++ F PN P +GE LLM++ RA +Q E KY
Sbjct: 279 QTWK-FFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGRKYELT 337
Query: 150 EDIEAA 155
I A
Sbjct: 338 SAISAG 343
>pdb|1EHN|A Chain A, Crystal Structure Of Chitinase A Mutant E315q Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 91 QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRD-RAAYEQRVKEYREKYAKA 149
QTW FD V++ F PN P +GE LLM++ RA +Q E KY
Sbjct: 279 QTWK-FFDGVDIDWQFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELT 337
Query: 150 EDIEAA 155
I A
Sbjct: 338 SAISAG 343
>pdb|1EDQ|A Chain A, Crystal Structure Of Chitinase A From S. Marcescens At
1.55 Angstroms
pdb|1FFQ|A Chain A, Crystal Structure Of Chitinase A Complexed With
Allosamidin
Length = 540
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 91 QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRD-RAAYEQRVKEYREKYAKA 149
QTW FD V++ F PN P +GE LLM++ RA +Q E KY
Sbjct: 279 QTWK-FFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELT 337
Query: 150 EDIEAA 155
I A
Sbjct: 338 SAISAG 343
>pdb|1FFR|A Chain A, Crystal Structure Of Chitinase A Mutant Y390f Complexed
With Hexa-n- Acetylchitohexaose (nag)6
Length = 540
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 91 QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRD-RAAYEQRVKEYREKYAKA 149
QTW FD V++ F PN P +GE LLM++ RA +Q E KY
Sbjct: 279 QTWK-FFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELT 337
Query: 150 EDIEAA 155
I A
Sbjct: 338 SAISAG 343
>pdb|1K9T|A Chain A, Chitinase A Complexed With Tetra-N-Acetylchitotriose
Length = 540
Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 91 QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRD-RAAYEQRVKEYREKYAKA 149
QTW FD V++ F PN P +GE LLM++ RA +Q E KY
Sbjct: 279 QTWK-FFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELT 337
Query: 150 EDIEAA 155
I A
Sbjct: 338 SAISAG 343
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 29.6 bits (65), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 38 GPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVCLD 87
GP S + ++ + ++ YP P + F++KI P ++ +G V D
Sbjct: 47 GPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTD 96
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 38 GPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVCLD 87
GP S + ++ + ++ YP P + F++KI P ++ +G V D
Sbjct: 48 GPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTD 97
>pdb|1RD6|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6L|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6N|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a In Complex With Allosamidin
Length = 563
Score = 29.6 bits (65), Expect = 1.0, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 91 QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRD-RAAYEQRVKEYREKYAKA 149
QTW FD V++ F PN P +GE LLM++ RA +Q E KY
Sbjct: 302 QTWK-FFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGRKYELT 360
Query: 150 EDIEAA 155
I A
Sbjct: 361 SAISAG 366
>pdb|2I7F|A Chain A, Sphingomonas Yanoikuyae B1 Ferredoxin
pdb|2I7F|B Chain B, Sphingomonas Yanoikuyae B1 Ferredoxin
Length = 108
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 12/64 (18%)
Query: 24 MINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGS 83
M+ DG Q+ + E P+HGG + I A+P + P K Y I++ G
Sbjct: 51 MLTDGYQDGTII-----ECPFHGGSFDIATGAAKAFPCQIPI-----KTYPVTIED--GW 98
Query: 84 VCLD 87
VC+D
Sbjct: 99 VCID 102
>pdb|2D4V|A Chain A, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|B Chain B, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|C Chain C, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|D Chain D, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
Length = 429
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
Query: 7 RREMDLMKLMMSDYKVEMINDG----------IQEFYVHFQGPNESPYHGGVWRIRVEL 55
+R++ M+L V++ +G I+E+ V +GP E+P GG+ + V +
Sbjct: 60 QRQIAWMELFAGQKAVQLYGEGQYLPDETMAAIREYKVAIKGPLETPVGGGIRSLNVAM 118
>pdb|3NSW|A Chain A, Crystal Structure Of Ancylostoma Ceylanicum
Excretory-Secretory Protein 2
pdb|3NSW|B Chain B, Crystal Structure Of Ancylostoma Ceylanicum
Excretory-Secretory Protein 2
pdb|3NSW|C Chain C, Crystal Structure Of Ancylostoma Ceylanicum
Excretory-Secretory Protein 2
pdb|3NSW|D Chain D, Crystal Structure Of Ancylostoma Ceylanicum
Excretory-Secretory Protein 2
pdb|3NSW|E Chain E, Crystal Structure Of Ancylostoma Ceylanicum
Excretory-Secretory Protein 2
pdb|3NSW|F Chain F, Crystal Structure Of Ancylostoma Ceylanicum
Excretory-Secretory Protein 2
pdb|3NSW|G Chain G, Crystal Structure Of Ancylostoma Ceylanicum
Excretory-Secretory Protein 2
Length = 106
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 16 MMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIG 67
M+S+ + E IND YV G Y+ WR+ ++P P + PS G
Sbjct: 10 MLSEIRQEDINDVETVAYVTVTGKTARSYNLQYWRL-YDVPKTAPSQWPSFG 60
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 38 GPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV 84
GP + Y ++ +++E YP P + FV KI ++ +G V
Sbjct: 77 GPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 123
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 38 GPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV 84
GP + Y ++ +++E YP P + FV KI ++ +G V
Sbjct: 49 GPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 95
>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli
Length = 245
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 124 AAALLMRDRAAYEQRVKEYREKYAKAEDIEAA 155
A A + +D A E + KEYREK+AK + ++ +
Sbjct: 88 AQAKMEKDAADNEAKGKEYREKFAKEKGVKTS 119
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 38 GPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV 84
GP + Y ++ +++E YP P + FV KI ++ +G V
Sbjct: 67 GPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 113
>pdb|2DSJ|A Chain A, Crystal Structure Of Project Id Tt0128 From Thermus
Thermophilus Hb8
pdb|2DSJ|B Chain B, Crystal Structure Of Project Id Tt0128 From Thermus
Thermophilus Hb8
Length = 423
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 112 LYPNPSDPL-NGEAAALLMRDRAAYEQRVKEYREKYAKAEDIEAAP 156
L P D + GEA AL+ R E+ + RE YA E+ AP
Sbjct: 372 LLKKPGDRVERGEALALVYHRRRGLEEALGHLREAYALGEEAHPAP 417
>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6H|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6I|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
pdb|1Q6I|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
Length = 224
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 124 AAALLMRDRAAYEQRVKEYREKYAKAEDIEAA 155
A A +D A E + KEYREK+AK + ++ +
Sbjct: 88 AQAKXEKDAADNEAKGKEYREKFAKEKGVKTS 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,197,059
Number of Sequences: 62578
Number of extensions: 212353
Number of successful extensions: 731
Number of sequences better than 100.0: 134
Number of HSP's better than 100.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 477
Number of HSP's gapped (non-prelim): 134
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)