Query 030092
Match_columns 183
No_of_seqs 169 out of 1319
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 08:23:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030092.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030092hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 2E-52 4.4E-57 313.9 14.3 144 4-149 2-148 (148)
2 COG5078 Ubiquitin-protein liga 100.0 3E-51 6.5E-56 313.3 16.6 146 1-148 1-152 (153)
3 PTZ00390 ubiquitin-conjugating 100.0 7.2E-48 1.6E-52 296.6 18.2 146 1-149 1-149 (152)
4 KOG0419 Ubiquitin-protein liga 100.0 7.3E-48 1.6E-52 282.4 14.1 146 1-148 1-150 (152)
5 PLN00172 ubiquitin conjugating 100.0 5.3E-47 1.1E-51 290.4 17.9 142 5-148 3-147 (147)
6 KOG0416 Ubiquitin-protein liga 100.0 4.9E-47 1.1E-51 288.9 13.1 183 1-183 1-189 (189)
7 KOG0418 Ubiquitin-protein liga 100.0 8.1E-45 1.7E-49 280.9 14.5 149 1-150 1-155 (200)
8 KOG0424 Ubiquitin-protein liga 100.0 8.1E-43 1.8E-47 259.2 14.8 147 1-149 1-158 (158)
9 KOG0425 Ubiquitin-protein liga 100.0 1.5E-42 3.4E-47 261.1 15.4 140 5-146 7-163 (171)
10 KOG0421 Ubiquitin-protein liga 100.0 4.4E-42 9.5E-47 255.4 10.8 140 4-146 30-172 (175)
11 PF00179 UQ_con: Ubiquitin-con 100.0 2.3E-41 5E-46 256.8 14.1 135 7-143 1-140 (140)
12 KOG0426 Ubiquitin-protein liga 100.0 1.1E-40 2.3E-45 244.8 13.8 144 1-146 1-162 (165)
13 cd00195 UBCc Ubiquitin-conjuga 100.0 1.8E-40 3.9E-45 252.3 15.2 136 6-143 2-141 (141)
14 smart00212 UBCc Ubiquitin-conj 100.0 8E-40 1.7E-44 249.8 16.8 140 6-147 1-145 (145)
15 KOG0422 Ubiquitin-protein liga 100.0 5.1E-38 1.1E-42 232.5 13.6 145 4-151 3-152 (153)
16 KOG0420 Ubiquitin-protein liga 100.0 1.9E-35 4.1E-40 225.8 11.2 144 4-150 29-177 (184)
17 KOG0423 Ubiquitin-protein liga 100.0 1E-34 2.3E-39 222.0 8.3 144 4-149 11-157 (223)
18 KOG0427 Ubiquitin conjugating 100.0 4.9E-28 1.1E-32 177.8 10.8 115 4-121 16-135 (161)
19 KOG0894 Ubiquitin-protein liga 99.9 1.7E-26 3.8E-31 182.4 12.9 130 1-136 1-143 (244)
20 KOG0429 Ubiquitin-conjugating 99.9 4.6E-22 1E-26 157.8 13.2 139 8-148 24-170 (258)
21 KOG0428 Non-canonical ubiquiti 99.8 6.2E-21 1.3E-25 153.7 9.5 109 4-115 12-125 (314)
22 KOG0895 Ubiquitin-conjugating 99.6 2.2E-16 4.9E-21 147.9 6.9 108 5-114 849-972 (1101)
23 KOG0895 Ubiquitin-conjugating 99.6 1.7E-14 3.7E-19 135.4 10.1 109 4-114 283-405 (1101)
24 KOG0896 Ubiquitin-conjugating 99.5 3E-14 6.4E-19 105.5 7.1 107 4-111 6-121 (138)
25 KOG0897 Predicted ubiquitin-co 98.5 3E-07 6.5E-12 66.6 5.8 92 49-142 13-109 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.3 3.2E-06 6.9E-11 63.6 7.7 66 45-112 34-105 (133)
27 PF05743 UEV: UEV domain; Int 97.8 5.2E-05 1.1E-09 56.2 5.3 76 29-111 32-115 (121)
28 PF08694 UFC1: Ubiquitin-fold 97.0 0.0036 7.8E-08 47.4 7.2 95 5-105 26-137 (161)
29 KOG2391 Vacuolar sorting prote 97.0 0.007 1.5E-07 51.9 9.3 79 29-114 52-138 (365)
30 PF05773 RWD: RWD domain; Int 95.8 0.021 4.5E-07 40.5 4.9 66 6-72 4-74 (113)
31 PF14462 Prok-E2_E: Prokaryoti 95.6 0.19 4.1E-06 37.3 9.3 57 14-71 8-66 (122)
32 smart00591 RWD domain in RING 94.4 0.31 6.7E-06 34.1 7.5 27 45-71 39-65 (107)
33 KOG3357 Uncharacterized conser 93.4 0.071 1.5E-06 39.9 2.6 95 5-103 29-138 (167)
34 PF14457 Prok-E2_A: Prokaryoti 92.2 0.22 4.7E-06 38.8 4.0 61 50-112 56-125 (162)
35 KOG0309 Conserved WD40 repeat- 88.6 2 4.3E-05 41.0 7.6 65 5-70 422-490 (1081)
36 PF09765 WD-3: WD-repeat regio 86.0 1.6 3.4E-05 37.2 5.0 80 6-106 102-182 (291)
37 KOG4018 Uncharacterized conser 79.4 5.7 0.00012 32.2 5.6 22 48-69 50-71 (215)
38 PF06524 NOA36: NOA36 protein; 72.3 2.6 5.6E-05 35.3 1.9 6 8-13 18-23 (314)
39 PF15243 ANAPC15: Anaphase-pro 66.9 22 0.00047 25.1 5.4 29 118-148 22-50 (92)
40 KOG1832 HIV-1 Vpr-binding prot 59.1 6 0.00013 38.8 1.9 6 44-49 1269-1274(1516)
41 PF06113 BRE: Brain and reprod 56.3 15 0.00033 31.8 3.7 28 46-74 305-332 (333)
42 PF10446 DUF2457: Protein of u 55.6 15 0.00032 33.1 3.6 6 97-102 26-31 (458)
43 KOG4032 Uncharacterized conser 53.5 67 0.0015 25.5 6.6 14 130-143 104-117 (184)
44 cd00421 intradiol_dioxygenase 46.4 29 0.00062 26.2 3.5 25 46-70 65-90 (146)
45 cd03457 intradiol_dioxygenase_ 43.7 32 0.0007 27.3 3.6 25 46-70 86-110 (188)
46 PF03366 YEATS: YEATS family; 42.6 70 0.0015 21.9 4.7 42 30-73 2-43 (84)
47 PF05470 eIF-3c_N: Eukaryotic 42.3 28 0.00061 32.6 3.4 11 140-150 125-135 (595)
48 KOG1832 HIV-1 Vpr-binding prot 37.7 17 0.00037 35.9 1.3 7 71-77 1272-1278(1516)
49 PF08595 RXT2_N: RXT2-like, N- 36.5 22 0.00047 27.3 1.5 6 177-182 78-83 (149)
50 PF00845 Gemini_BL1: Geminivir 36.5 73 0.0016 26.6 4.6 45 28-73 101-154 (276)
51 cd03459 3,4-PCD Protocatechuat 35.0 55 0.0012 25.2 3.5 25 46-70 72-101 (158)
52 smart00340 HALZ homeobox assoc 30.9 35 0.00075 20.6 1.4 12 4-15 20-31 (44)
53 KOG1991 Nuclear transport rece 29.8 1.4E+02 0.003 29.8 5.9 21 93-114 830-850 (1010)
54 KOG0662 Cyclin-dependent kinas 29.7 43 0.00094 27.2 2.2 55 61-116 167-224 (292)
55 TIGR01651 CobT cobaltochelatas 28.7 1.3E+02 0.0028 28.4 5.4 25 128-152 179-203 (600)
56 KOG3064 RNA-binding nuclear pr 28.3 20 0.00044 30.1 0.1 11 46-56 57-67 (303)
57 PF05470 eIF-3c_N: Eukaryotic 27.8 76 0.0016 29.8 3.8 24 137-160 115-139 (595)
58 PF09606 Med15: ARC105 or Med1 27.7 20 0.00043 34.8 0.0 26 46-71 713-738 (799)
59 PRK11700 hypothetical protein; 26.7 3.3E+02 0.0072 21.7 6.7 96 4-105 52-184 (187)
60 KOG3375 Phosphoprotein/predict 26.0 25 0.00055 27.0 0.3 18 159-176 51-68 (174)
61 KOG0291 WD40-repeat-containing 24.9 1.4E+02 0.003 29.1 4.8 19 95-114 790-808 (893)
62 PF06113 BRE: Brain and reprod 24.8 1.1E+02 0.0023 26.7 3.9 43 29-77 53-96 (333)
63 KOG3203 Mitochondrial/chloropl 24.7 36 0.00077 26.4 0.9 14 71-86 50-63 (165)
64 TIGR02423 protocat_alph protoc 24.0 1E+02 0.0022 24.6 3.4 24 46-69 96-124 (193)
65 PF13950 Epimerase_Csub: UDP-g 24.0 83 0.0018 20.1 2.4 15 91-105 36-50 (62)
66 KOG4445 Uncharacterized conser 23.3 98 0.0021 26.7 3.3 25 47-71 45-69 (368)
67 cd07981 TAF12 TATA Binding Pro 23.1 2E+02 0.0044 18.8 4.3 44 107-150 7-50 (72)
68 KOG1047 Bifunctional leukotrie 23.0 81 0.0017 29.5 2.9 29 42-71 248-279 (613)
69 PF03847 TFIID_20kDa: Transcri 22.7 2.1E+02 0.0045 18.8 4.2 46 107-152 5-50 (68)
70 PF12018 DUF3508: Domain of un 22.6 99 0.0021 26.0 3.3 31 119-149 238-268 (281)
71 KOG0177 20S proteasome, regula 22.4 23 0.00049 28.4 -0.6 30 81-111 135-164 (200)
72 cd03463 3,4-PCD_alpha Protocat 22.2 1.2E+02 0.0026 24.0 3.5 24 46-69 92-120 (185)
73 PF12652 CotJB: CotJB protein; 22.0 1.8E+02 0.0039 19.7 3.9 38 117-154 24-61 (78)
74 PF04881 Adeno_GP19K: Adenovir 21.9 1.1E+02 0.0024 23.0 3.0 33 23-55 41-74 (139)
75 KOG3214 Uncharacterized Zn rib 21.8 51 0.0011 23.7 1.1 17 159-175 91-107 (109)
76 PF11745 DUF3304: Protein of u 21.6 46 0.001 24.2 0.9 21 81-101 50-70 (118)
77 KOG3241 Uncharacterized conser 21.1 1.1E+02 0.0024 24.4 3.0 7 131-137 132-138 (227)
78 PF02724 CDC45: CDC45-like pro 21.0 57 0.0012 30.7 1.6 17 71-87 86-103 (622)
79 COG2819 Predicted hydrolase of 20.7 1.4E+02 0.0029 25.2 3.6 30 41-70 15-46 (264)
80 PHA03378 EBNA-3B; Provisional 20.5 67 0.0014 30.9 1.9 8 71-78 251-258 (991)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-52 Score=313.85 Aligned_cols=144 Identities=38% Similarity=0.746 Sum_probs=139.4
Q ss_pred HHHHHHHHHHhc---CCCCcEEEeecCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCceeEecccccceeeCC
Q 030092 4 PSKRREMDLMKL---MMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEM 80 (183)
Q Consensus 4 ~~kRl~kEl~~l---~~~gi~v~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (183)
+.+||.||++++ +++|+++.+.++|+++|+++|.||.+||||||+|++.|.||++||++||+|+|+|+||||||+ .
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~-~ 80 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNID-S 80 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcC-c
Confidence 357999999877 789999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CCeeEccCCCCCCCCccchHhHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHccc
Q 030092 81 SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKYAKA 149 (183)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~r~~~~~~a~~ 149 (183)
+|.||++||+..|+|+++|.+||++ |++||.+||+++|++.++|++|+.|+.+|.++||+||++||+.
T Consensus 81 ~G~IclDILk~~WsPAl~i~~Vlls-I~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~~ 148 (148)
T KOG0417|consen 81 NGRICLDILKDQWSPALTISKVLLS-ICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAMG 148 (148)
T ss_pred cccchHHhhhccCChhhHHHHHHHH-HHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999 9999999999999999999999999999999999999999973
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-51 Score=313.32 Aligned_cols=146 Identities=41% Similarity=0.831 Sum_probs=140.8
Q ss_pred CCC--HHHHHHHHHHhc---CCCCcEEEeecC-CcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeccccc
Q 030092 1 MSS--PSKRREMDLMKL---MMSDYKVEMIND-GIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYH 74 (183)
Q Consensus 1 Mss--~~kRl~kEl~~l---~~~gi~v~~~~~-~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 74 (183)
|++ +.+||++|++++ +++++++.+.++ |+++|.++|.||.+|||+||+|++.|.||.+||++||+|+|+|+|||
T Consensus 1 ~~s~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~H 80 (153)
T COG5078 1 MSSPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFH 80 (153)
T ss_pred CCchhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcC
Confidence 454 899999999988 568999999988 99999999999999999999999999999999999999999999999
Q ss_pred ceeeCCCCeeEccCCCCCCCCccchHhHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHcc
Q 030092 75 PNIDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKYAK 148 (183)
Q Consensus 75 PnV~~~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~r~~~~~~a~ 148 (183)
|||+ .+|.|||+||++.|+|+++|.+||++ |++||.+||+++|+|.+||++|++|+++|.++||.++++||.
T Consensus 81 PNV~-~~G~vCLdIL~~~WsP~~~l~sILls-l~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 81 PNVD-PSGNVCLDILKDRWSPVYTLETILLS-LQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred CCcC-CCCCChhHHHhCCCCccccHHHHHHH-HHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 9999 69999999999999999999999999 999999999999999999999999999999999999999986
No 3
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=7.2e-48 Score=296.61 Aligned_cols=146 Identities=37% Similarity=0.717 Sum_probs=140.8
Q ss_pred CCCHHHHHHHHHHhc---CCCCcEEEeecCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeccccccee
Q 030092 1 MSSPSKRREMDLMKL---MMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNI 77 (183)
Q Consensus 1 Mss~~kRl~kEl~~l---~~~gi~v~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV 77 (183)
|+ +.|||++|++.+ ++.|+.+.+.++|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|+||||||
T Consensus 1 ~~-~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV 79 (152)
T PTZ00390 1 MS-ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNI 79 (152)
T ss_pred Cc-HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceE
Confidence 55 689999999987 67899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCeeEccCCCCCCCCccchHhHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHccc
Q 030092 78 DEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKYAKA 149 (183)
Q Consensus 78 ~~~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~r~~~~~~a~~ 149 (183)
+. +|.||+++|++.|+|++||.+||++ |++||.+|++++|+|.+||++|++|++.|.++||+|+++||..
T Consensus 80 ~~-~G~iCl~iL~~~W~p~~ti~~iL~~-i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~ 149 (152)
T PTZ00390 80 DK-LGRICLDILKDKWSPALQIRTVLLS-IQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKH 149 (152)
T ss_pred CC-CCeEECccCcccCCCCCcHHHHHHH-HHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Confidence 95 9999999999999999999999998 9999999999999999999999999999999999999999984
No 4
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-48 Score=282.37 Aligned_cols=146 Identities=34% Similarity=0.723 Sum_probs=140.7
Q ss_pred CCC-HHHHHHHHHHhc---CCCCcEEEeecCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCceeEecccccce
Q 030092 1 MSS-PSKRREMDLMKL---MMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPN 76 (183)
Q Consensus 1 Mss-~~kRl~kEl~~l---~~~gi~v~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 76 (183)
|++ |.+||+++++++ ++.||+..|.++|+..|.++|+||.+|||+||+|++.|.|++.||.+||.|+|.+.+||||
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPN 80 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPN 80 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCC
Confidence 888 889999999988 7889999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCeeEccCCCCCCCCccchHhHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHcc
Q 030092 77 IDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKYAK 148 (183)
Q Consensus 77 V~~~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~r~~~~~~a~ 148 (183)
||. +|.+|++||..+|+|+|++.+||.+ ||+||.+|++++|+|.+||++|.+|+.+|.++||..+.+...
T Consensus 81 vya-~G~iClDiLqNrWsp~Ydva~ILts-iQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqsw~ 150 (152)
T KOG0419|consen 81 VYA-DGSICLDILQNRWSPTYDVASILTS-IQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQSWS 150 (152)
T ss_pred cCC-CCcchHHHHhcCCCCchhHHHHHHH-HHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHhhc
Confidence 995 8999999999999999999999999 999999999999999999999999999999999999887643
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=5.3e-47 Score=290.42 Aligned_cols=142 Identities=35% Similarity=0.737 Sum_probs=137.4
Q ss_pred HHHHHHHHHhc---CCCCcEEEeecCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCceeEecccccceeeCCC
Q 030092 5 SKRREMDLMKL---MMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMS 81 (183)
Q Consensus 5 ~kRl~kEl~~l---~~~gi~v~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~ 81 (183)
.+||++|++++ +++|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||+. +
T Consensus 3 ~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~-~ 81 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINS-N 81 (147)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECC-C
Confidence 59999999987 6789999999999999999999999999999999999999999999999999999999999995 9
Q ss_pred CeeEccCCCCCCCCccchHhHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHcc
Q 030092 82 GSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKYAK 148 (183)
Q Consensus 82 G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~r~~~~~~a~ 148 (183)
|.||+++|.+.|+|+++|.+||.+ |++||.+|++++|+|.+||++|.+|+++|.++||+|+++||.
T Consensus 82 G~iCl~il~~~W~p~~ti~~il~~-i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 147 (147)
T PLN00172 82 GSICLDILRDQWSPALTVSKVLLS-ISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYAT 147 (147)
T ss_pred CEEEcccCcCCCCCcCcHHHHHHH-HHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999998 999999999999999999999999999999999999999984
No 6
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-47 Score=288.89 Aligned_cols=183 Identities=64% Similarity=1.121 Sum_probs=163.5
Q ss_pred CCCHHHHHHHHHHhcCCCCcEEEeecCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCceeEecccccceeeCC
Q 030092 1 MSSPSKRREMDLMKLMMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEM 80 (183)
Q Consensus 1 Mss~~kRl~kEl~~l~~~gi~v~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (183)
|++..|||..|+.+|..++..|...++++++++|.+.||.+|||+||+++++|.+|++||++.|.|.|.++||||||+..
T Consensus 1 ms~~~rRid~Dv~KL~~s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~ 80 (189)
T KOG0416|consen 1 MSSGKRRIDTDVMKLLMSDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEA 80 (189)
T ss_pred CCCcccchhhHHHHHHhcCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEccCCCCCCCCccchHhHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHccccccccC----C
Q 030092 81 SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKYAKAEDIEAA----P 156 (183)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~r~~~~~~a~~~~~~~~----~ 156 (183)
+|.|||+.++..|+|.+.+..|+..+|-+||..||+.+|+|.+||.+|.++++.|.++||.+++|||+.....+. .
T Consensus 81 SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~~~~~~~~~~~~ 160 (189)
T KOG0416|consen 81 SGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATPEALKEEDLGLE 160 (189)
T ss_pred cCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcChhhhcccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999876662 2
Q ss_pred CCCCCccccccCCC--CCCcchhcCCCCC
Q 030092 157 DENSSDEEMSEDEY--NSSDDAMAGKADP 183 (183)
Q Consensus 157 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 183 (183)
.++++.+++++.+| +|+..+++++.+|
T Consensus 161 ~~d~d~s~~~~~sd~ddd~~~~~~~~~~~ 189 (189)
T KOG0416|consen 161 DSDDDSSSESSGSDSDDDEAGDMELKLDP 189 (189)
T ss_pred ccccccccccccccccchhhhhhhhccCC
Confidence 23333333333333 4445556665553
No 7
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-45 Score=280.89 Aligned_cols=149 Identities=30% Similarity=0.692 Sum_probs=144.3
Q ss_pred CCCHHHHHHHHHHhcC------CCCcEEEeecCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeccccc
Q 030092 1 MSSPSKRREMDLMKLM------MSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYH 74 (183)
Q Consensus 1 Mss~~kRl~kEl~~l~------~~gi~v~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 74 (183)
|+.+.+||++|+++.. ..||.++..++++.+..+.|.||++|||+||+|.+.|++|++|||+||+|+|.|+|||
T Consensus 1 m~~~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwH 80 (200)
T KOG0418|consen 1 MSNAFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWH 80 (200)
T ss_pred CccHHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeec
Confidence 7778999999999862 5699999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeCCCCeeEccCCCCCCCCccchHhHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHcccc
Q 030092 75 PNIDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKYAKAE 150 (183)
Q Consensus 75 PnV~~~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~r~~~~~~a~~~ 150 (183)
|||+..+|.||+++|++.|++++||+++|++ ||.+|..|++.+|....+|++|.+|++.|.+.||.|+..||.++
T Consensus 81 PnVSs~tGaICLDilkd~Wa~slTlrtvLis-lQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~~ 155 (200)
T KOG0418|consen 81 PNVSSQTGAICLDILKDQWAASLTLRTVLIS-LQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGGR 155 (200)
T ss_pred CCCCcccccchhhhhhcccchhhhHHHHHHH-HHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999 99999999999999999999999999999999999999999997
No 8
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-43 Score=259.20 Aligned_cols=147 Identities=30% Similarity=0.596 Sum_probs=138.6
Q ss_pred CCC-HHHHHHHHHHhc---CCCCcEEEeec-----CCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCceeEecc
Q 030092 1 MSS-PSKRREMDLMKL---MMSDYKVEMIN-----DGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNK 71 (183)
Q Consensus 1 Mss-~~kRl~kEl~~l---~~~gi~v~~~~-----~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 71 (183)
||+ +..||+.|-+.+ .+.|+++.|.. .|+..|.|.|.|+.||+|+||.|.+.+.||++||++||+++|.++
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence 777 899999999876 67799998875 369999999999999999999999999999999999999999999
Q ss_pred cccceeeCCCCeeEccCCCCC--CCCccchHhHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHccc
Q 030092 72 IYHPNIDEMSGSVCLDVINQT--WSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKYAKA 149 (183)
Q Consensus 72 i~HPnV~~~~G~icl~~l~~~--W~p~~~i~~il~~~i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~r~~~~~~a~~ 149 (183)
+||||||+ +|.|||+||.+. |+|+.||.+||+. ||.||..||+.+|+|.+|..+|.+|+..|.++||.++++||..
T Consensus 81 l~HPNVyp-sgtVcLsiL~e~~~W~paitikqiL~g-IqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~~ 158 (158)
T KOG0424|consen 81 LFHPNVYP-SGTVCLSILNEEKDWRPAITIKQILLG-IQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAKA 158 (158)
T ss_pred CcCCCcCC-CCcEehhhhccccCCCchhhHHHHHHH-HHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhccC
Confidence 99999997 999999999865 9999999999988 9999999999999999999999999999999999999999863
No 9
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-42 Score=261.11 Aligned_cols=140 Identities=26% Similarity=0.584 Sum_probs=129.2
Q ss_pred HHHHHHHHHhc---CCCCcEEEeecC-CcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCceeEecccccceeeCC
Q 030092 5 SKRREMDLMKL---MMSDYKVEMIND-GIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEM 80 (183)
Q Consensus 5 ~kRl~kEl~~l---~~~gi~v~~~~~-~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (183)
..=|+++|++| +..|+.+...++ |+++|.|.|+||++|+|+||.|+..+.||.+||.+||++||+|.+||||||+
T Consensus 7 ~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~- 85 (171)
T KOG0425|consen 7 SLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYE- 85 (171)
T ss_pred HHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCC-
Confidence 34455555554 888999998876 8999999999999999999999999999999999999999999999999995
Q ss_pred CCeeEccCCC-------------CCCCCccchHhHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHH
Q 030092 81 SGSVCLDVIN-------------QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKY 146 (183)
Q Consensus 81 ~G~icl~~l~-------------~~W~p~~~i~~il~~~i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~r~~~~~~ 146 (183)
+|.||++||. +.|.|.+|+++||++ |.+||.+||.++|+|-+||+.|+.|+++|.++|++++++.
T Consensus 86 ~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllS-iIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s 163 (171)
T KOG0425|consen 86 DGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLS-IISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRRS 163 (171)
T ss_pred CCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHH-HHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 9999999994 479999999999999 9999999999999999999999999999999999999864
No 10
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-42 Score=255.38 Aligned_cols=140 Identities=31% Similarity=0.664 Sum_probs=133.2
Q ss_pred HHHHHHHHHHhcC---CCCcEEEeecCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCceeEecccccceeeCC
Q 030092 4 PSKRREMDLMKLM---MSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEM 80 (183)
Q Consensus 4 ~~kRl~kEl~~l~---~~gi~v~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (183)
..|||++||+.|+ .+||++.|.++|++.|.++|.||++|+|+|-.|++.+.||.+||++||+|+|+|++|||||+ .
T Consensus 30 V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD-~ 108 (175)
T KOG0421|consen 30 VTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVD-L 108 (175)
T ss_pred HHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCcc-c
Confidence 5799999999984 56999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred CCeeEccCCCCCCCCccchHhHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHH
Q 030092 81 SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKY 146 (183)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~r~~~~~~ 146 (183)
.|.|||+||+++|++.|.+++||++ ||+||-+||..+|+|..||+++. |.++|++.+.+.-++.
T Consensus 109 ~GnIcLDILkdKWSa~YdVrTILLS-iQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~~ 172 (175)
T KOG0421|consen 109 SGNICLDILKDKWSAVYDVRTILLS-IQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKEI 172 (175)
T ss_pred cccchHHHHHHHHHHHHhHHHHHHH-HHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999 99999999999999999999987 9999999998776653
No 11
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=2.3e-41 Score=256.77 Aligned_cols=135 Identities=37% Similarity=0.802 Sum_probs=124.0
Q ss_pred HHHHHHHhc---CCCCcEEEeecC-CcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCceeEecccccceeeCCCC
Q 030092 7 RREMDLMKL---MMSDYKVEMIND-GIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSG 82 (183)
Q Consensus 7 Rl~kEl~~l---~~~gi~v~~~~~-~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~G 82 (183)
||++|++.+ ++.|+.+.+.++ |+++|+++|.||++|||+||+|+|.|.||++||++||+|+|+|+||||||+ .+|
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~-~~G 79 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNID-ENG 79 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB--TTS
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccc-ccc
Confidence 899999877 788999999987 999999999999999999999999999999999999999999999999999 699
Q ss_pred eeEccCCCC-CCCCccchHhHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 030092 83 SVCLDVINQ-TWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYR 143 (183)
Q Consensus 83 ~icl~~l~~-~W~p~~~i~~il~~~i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~r~~~ 143 (183)
.||+++|.. .|+|+++|.+||.+ |+++|.+|+.++|+|.+|+++|++++++|.++||+|.
T Consensus 80 ~icl~~l~~~~W~p~~~i~~il~~-i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 80 RICLDILNPESWSPSYTIESILLS-IQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp BBGHGGGTTTTC-TTSHHHHHHHH-HHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred cchhhhhhcccCCcccccccHHHH-HHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 999999985 59999999999988 9999999999999999999999999999999999984
No 12
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-40 Score=244.80 Aligned_cols=144 Identities=28% Similarity=0.530 Sum_probs=136.4
Q ss_pred CCC-HHHHHHHHHHhc---CCCCcEEEeec-CCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCceeEecccccc
Q 030092 1 MSS-PSKRREMDLMKL---MMSDYKVEMIN-DGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHP 75 (183)
Q Consensus 1 Mss-~~kRl~kEl~~l---~~~gi~v~~~~-~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 75 (183)
|+. |.|||++|+++| ++.||.+.|.+ +|++.|.|.|.||.+|+|+||+|..++.||.+||.+||+++|...+|||
T Consensus 1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHP 80 (165)
T KOG0426|consen 1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHP 80 (165)
T ss_pred CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccC
Confidence 665 899999999987 78899998875 6899999999999999999999999999999999999999999999999
Q ss_pred eeeCCCCeeEccCCC-------------CCCCCccchHhHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHH
Q 030092 76 NIDEMSGSVCLDVIN-------------QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEY 142 (183)
Q Consensus 76 nV~~~~G~icl~~l~-------------~~W~p~~~i~~il~~~i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~r~~ 142 (183)
||+. +|+||++||. +.|+|.++++.||++ +.+||.+||.++++|.+|+.+++++|++|.+.||..
T Consensus 81 Niy~-dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLS-V~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~l 158 (165)
T KOG0426|consen 81 NIYP-DGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLS-VVSMLAEPNDESGANVDACKMWREDREEFEKIAKRL 158 (165)
T ss_pred cccC-CCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHH-HHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHH
Confidence 9995 9999999984 579999999999999 999999999999999999999999999999999999
Q ss_pred HHHH
Q 030092 143 REKY 146 (183)
Q Consensus 143 ~~~~ 146 (183)
++|-
T Consensus 159 vrKt 162 (165)
T KOG0426|consen 159 VRKT 162 (165)
T ss_pred HHHh
Confidence 8874
No 13
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=1.8e-40 Score=252.25 Aligned_cols=136 Identities=39% Similarity=0.830 Sum_probs=130.3
Q ss_pred HHHHHHHHhc---CCCCcEEEeecCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCceeEecccccceeeCCCC
Q 030092 6 KRREMDLMKL---MMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSG 82 (183)
Q Consensus 6 kRl~kEl~~l---~~~gi~v~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~G 82 (183)
|||++|++.+ ++.|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||+ .+|
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~-~~G 80 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD-ENG 80 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCC-CCC
Confidence 7999999876 567999999999999999999999999999999999999999999999999999999999999 699
Q ss_pred eeEccCCCCC-CCCccchHhHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 030092 83 SVCLDVINQT-WSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYR 143 (183)
Q Consensus 83 ~icl~~l~~~-W~p~~~i~~il~~~i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~r~~~ 143 (183)
.||+++|... |+|+++|.+||.+ |+++|.+|+.++|+|.+||++|++|+++|.++||.|+
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~-i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 81 KICLSILKTHGWSPAYTLRTVLLS-LQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CCchhhcCCCCcCCcCcHHHHHHH-HHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 9999999877 9999999999998 9999999999999999999999999999999999874
No 14
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=8e-40 Score=249.75 Aligned_cols=140 Identities=36% Similarity=0.790 Sum_probs=133.5
Q ss_pred HHHHHHHHhc---CCCCcEEEeecC-CcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCceeEecccccceeeCCC
Q 030092 6 KRREMDLMKL---MMSDYKVEMIND-GIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMS 81 (183)
Q Consensus 6 kRl~kEl~~l---~~~gi~v~~~~~-~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~ 81 (183)
+||++|++.+ ++.|+.+.+.++ |+++|+++|.||.+|||+||+|++.|.||++||++||+|+|.+++|||||+. +
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~-~ 79 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDS-S 79 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECC-C
Confidence 5899999876 577999988875 9999999999999999999999999999999999999999999999999996 9
Q ss_pred CeeEccCCC-CCCCCccchHhHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHc
Q 030092 82 GSVCLDVIN-QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKYA 147 (183)
Q Consensus 82 G~icl~~l~-~~W~p~~~i~~il~~~i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~r~~~~~~a 147 (183)
|.||+++|. ++|+|++++.++|.+ |+.+|.+|+.++|+|.+|+++|.++++.|.++|+.++++++
T Consensus 80 G~icl~~l~~~~W~p~~~l~~il~~-i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 80 GEICLDILKQEKWSPATTLETVLLS-IQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CCEehhhcCCCCCCCCCcHHHHHHH-HHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 999999998 899999999999988 99999999999999999999999999999999999999985
No 15
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-38 Score=232.48 Aligned_cols=145 Identities=30% Similarity=0.659 Sum_probs=134.1
Q ss_pred HHHHHHHHHHhcCCCCcE----EEeecCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCceeEecccccceeeC
Q 030092 4 PSKRREMDLMKLMMSDYK----VEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDE 79 (183)
Q Consensus 4 ~~kRl~kEl~~l~~~gi~----v~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 79 (183)
+.+||+|||..|...+.. +...+.|++.|.+.|. |.+-||..|.|+++|.||.+|||+||+|.|.|+|||||||+
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe 81 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDE 81 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCC
Confidence 679999999988443332 4556789999999998 99999999999999999999999999999999999999997
Q ss_pred CCCeeEccCCC-CCCCCccchHhHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHccccc
Q 030092 80 MSGSVCLDVIN-QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKYAKAED 151 (183)
Q Consensus 80 ~~G~icl~~l~-~~W~p~~~i~~il~~~i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~r~~~~~~a~~~~ 151 (183)
.|.||+.|+. ++|.|++++.+||++ |..++.+|+++.|++.++|..|.+|+..|.++|.++|+||++.+.
T Consensus 82 -~gqvClPiis~EnWkP~T~teqVlqa-Li~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e~rp 152 (153)
T KOG0422|consen 82 -KGQVCLPIISAENWKPATRTEQVLQA-LIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSEKRP 152 (153)
T ss_pred -CCceeeeeeecccccCcccHHHHHHH-HHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcCcCC
Confidence 6999999985 899999999999988 999999999999999999999999999999999999999998765
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-35 Score=225.83 Aligned_cols=144 Identities=34% Similarity=0.689 Sum_probs=129.1
Q ss_pred HHHHHHHHHHhc-CCCCcEEEee--cCCcc--eEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCceeEecccccceee
Q 030092 4 PSKRREMDLMKL-MMSDYKVEMI--NDGIQ--EFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNID 78 (183)
Q Consensus 4 ~~kRl~kEl~~l-~~~gi~v~~~--~~~~~--~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~ 78 (183)
+.-||++++..+ .++++++... .+++. .+.++|. |..+.|.||.|+|.+++|+.||+.||+|+|+|+||||||+
T Consensus 29 a~lrl~~di~elnLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId 107 (184)
T KOG0420|consen 29 ALLRLKKDILELNLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNID 107 (184)
T ss_pred HHHHHHhhhhhccCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcC
Confidence 677899999887 5566654322 23444 5999997 9999999999999999999999999999999999999999
Q ss_pred CCCCeeEccCCCCCCCCccchHhHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHcccc
Q 030092 79 EMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKYAKAE 150 (183)
Q Consensus 79 ~~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~r~~~~~~a~~~ 150 (183)
. +|.|||+||+++|+|+.+|.+|+.. |+.||.+|++++|+|.+||.++.+|++.|..+||.....++..+
T Consensus 108 ~-~GnVCLnILRedW~P~lnL~sIi~G-L~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~v~~ 177 (184)
T KOG0420|consen 108 L-DGNVCLNILREDWRPVLNLNSIIYG-LQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGCVGQ 177 (184)
T ss_pred C-cchHHHHHHHhcCccccchHHHHHH-HHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCccCc
Confidence 4 9999999999999999999999966 99999999999999999999999999999999999998887654
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-34 Score=222.00 Aligned_cols=144 Identities=28% Similarity=0.602 Sum_probs=139.7
Q ss_pred HHHHHHHHHHhc---CCCCcEEEeecCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCceeEecccccceeeCC
Q 030092 4 PSKRREMDLMKL---MMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEM 80 (183)
Q Consensus 4 ~~kRl~kEl~~l---~~~gi~v~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (183)
..|.+.+|++.+ ||.||.|.+.++++....+.|.||.||||++|.|++.+.+..+||.+||+-.|+|+||||||- .
T Consensus 11 vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVa-a 89 (223)
T KOG0423|consen 11 VIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVA-A 89 (223)
T ss_pred HHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcc-c
Confidence 368899999988 888999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CCeeEccCCCCCCCCccchHhHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHccc
Q 030092 81 SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKYAKA 149 (183)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~r~~~~~~a~~ 149 (183)
+|.||.+.|+.+|+|..+|+.||+. |.+||..|++++.+|.+|++++.+|.++|.++||-++..+|.+
T Consensus 90 NGEICVNtLKkDW~p~LGirHvLlt-ikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~p 157 (223)
T KOG0423|consen 90 NGEICVNTLKKDWNPSLGIRHVLLT-IKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAKP 157 (223)
T ss_pred CceehhhhhhcccCcccchhhHhhh-hheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999999988 9999999999999999999999999999999999999999986
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.9e-28 Score=177.78 Aligned_cols=115 Identities=25% Similarity=0.583 Sum_probs=103.1
Q ss_pred HHHHHHHHHHhc---CCCCcEEEeecCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCceeEeccc-ccceeeC
Q 030092 4 PSKRREMDLMKL---MMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKI-YHPNIDE 79 (183)
Q Consensus 4 ~~kRl~kEl~~l---~~~gi~v~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i-~HPnV~~ 79 (183)
|.+||||||.++ +|.|+.+. ..+|+.+|.+-+.|.+||.|+|.+|.+.+.||+.||+..|.|.|+.++ .||+||
T Consensus 16 at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiY- 93 (161)
T KOG0427|consen 16 ATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIY- 93 (161)
T ss_pred HHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCcee-
Confidence 689999999987 78899888 667999999999999999999999999999999999999999999987 899999
Q ss_pred CCCeeEccCCCCCCCCccchHhHHHHHHHHhhcC-CCCCCCcc
Q 030092 80 MSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLY-PNPSDPLN 121 (183)
Q Consensus 80 ~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~-p~~~~p~n 121 (183)
++|.|||+||.+.|+|++++.+|.++ |.+||.. .....|.+
T Consensus 94 SNGHICL~iL~d~WsPAmsv~SvClS-IlSMLSSs~eKqrP~D 135 (161)
T KOG0427|consen 94 SNGHICLDILYDSWSPAMSVQSVCLS-ILSMLSSSKEKQRPTD 135 (161)
T ss_pred cCCeEEEEeecccCCcchhhHHHHHH-HHHHHccCccccCCCc
Confidence 59999999999999999999999999 6677664 34344443
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.7e-26 Score=182.41 Aligned_cols=130 Identities=21% Similarity=0.486 Sum_probs=105.9
Q ss_pred CCC--HHHHHHHHHHhc---CCCCcEEEeecCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCceeEecc--cc
Q 030092 1 MSS--PSKRREMDLMKL---MMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNK--IY 73 (183)
Q Consensus 1 Mss--~~kRl~kEl~~l---~~~gi~v~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~--i~ 73 (183)
||+ +.|||+||++.| |.++|.+.|..+|+.+||.+|.||++|||+||.|+.+|.||++||++||.|++.|| .|
T Consensus 1 ma~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRF 80 (244)
T KOG0894|consen 1 MASKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRF 80 (244)
T ss_pred CcchHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCce
Confidence 776 899999999987 78899999999999999999999999999999999999999999999999999996 34
Q ss_pred cceeeCCCCeeEccCCC---CCCCCccchHhHHHHHHHHhhcC--CCCCCCcc-HHHHHHHHhCHHHHH
Q 030092 74 HPNIDEMSGSVCLDVIN---QTWSPMFDLVNVFEVFLPQLLLY--PNPSDPLN-GEAAALLMRDRAAYE 136 (183)
Q Consensus 74 HPnV~~~~G~icl~~l~---~~W~p~~~i~~il~~~i~~ll~~--p~~~~p~n-~ea~~~~~~~~~~f~ 136 (183)
.+ +-++||++.. +.|+|+|++.+||.. |.++|.+ |...+... .--.++|.++..+|+
T Consensus 81 kt-----ntRLCLSiSDfHPdsWNP~WsVStILtG-LlSFM~e~~pTtGSI~tS~~~kr~lA~~SlaFN 143 (244)
T KOG0894|consen 81 KT-----NTRLCLSISDFHPDSWNPGWSVSTILTG-LLSFMTEDSPTTGSIETSDQDKRMLAKSSLAFN 143 (244)
T ss_pred ec-----CceEEEeccccCcCcCCCcccHHHHHHH-HHHHHhcCCCccCcccccHHHHHHHHHhhhhhc
Confidence 43 4589998874 899999999999987 6666654 33333322 223445555555555
No 20
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=4.6e-22 Score=157.84 Aligned_cols=139 Identities=22% Similarity=0.339 Sum_probs=122.3
Q ss_pred HHHHHHhc---CCCCcEEEeecCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCC--CCCceeEecccccceeeCCCC
Q 030092 8 REMDLMKL---MMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPY--KSPSIGFVNKIYHPNIDEMSG 82 (183)
Q Consensus 8 l~kEl~~l---~~~gi~v~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~--~pP~v~f~t~i~HPnV~~~~G 82 (183)
|+.|+... +.+||+|.|.-.+-+.|.++|++ ..+.|.||+|+|.|.+|++||. ..|+|.|.+.+|||+|.+.++
T Consensus 24 llAEf~lV~~ekL~gIyviPSyan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~sk 102 (258)
T KOG0429|consen 24 LLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKSK 102 (258)
T ss_pred HHHHHHHHHhccCCceEEcccccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCcc
Confidence 44455432 67899999999999999999994 6678999999999999999995 579999999999999999999
Q ss_pred eeEccCCCCCCC-CccchHhHHHHHHHHhhcCCCCCCC--ccHHHHHHHHhCHHHHHHHHHHHHHHHcc
Q 030092 83 SVCLDVINQTWS-PMFDLVNVFEVFLPQLLLYPNPSDP--LNGEAAALLMRDRAAYEQRVKEYREKYAK 148 (183)
Q Consensus 83 ~icl~~l~~~W~-p~~~i~~il~~~i~~ll~~p~~~~p--~n~ea~~~~~~~~~~f~~~~r~~~~~~a~ 148 (183)
.+|++-....|+ -...|+.+|.. +|.+|++|+...+ .|++|+.+|++++++|.++|+++++....
T Consensus 103 eLdl~raf~eWRk~ehhiwqvL~y-lqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~sr~ 170 (258)
T KOG0429|consen 103 ELDLNRAFPEWRKEEHHIWQVLVY-LQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKASRS 170 (258)
T ss_pred ceeHhhhhhhhhccccHHHHHHHH-HHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 999998877795 45779999988 9999999998765 59999999999999999999999986544
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=6.2e-21 Score=153.65 Aligned_cols=109 Identities=23% Similarity=0.512 Sum_probs=93.0
Q ss_pred HHHHHHHHHHhcC--CCCcEEEeecCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCceeEecccccceeeCCC
Q 030092 4 PSKRREMDLMKLM--MSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMS 81 (183)
Q Consensus 4 ~~kRl~kEl~~l~--~~gi~v~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~ 81 (183)
+.|||+||.+++. ...+...|.++|+++|+++|.||.+|-|+||+|+.+|.||.+||++||.+-.+|+--..- .+
T Consensus 12 aVkRlmkEa~El~~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGRFE---~n 88 (314)
T KOG0428|consen 12 AVKRLMKEAAELKDPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGRFE---VN 88 (314)
T ss_pred HHHHHHHHHHHhcCchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCCcee---eC
Confidence 6899999999983 445778899999999999999999999999999999999999999999999999643333 24
Q ss_pred CeeEccCCC---CCCCCccchHhHHHHHHHHhhcCCC
Q 030092 82 GSVCLDVIN---QTWSPMFDLVNVFEVFLPQLLLYPN 115 (183)
Q Consensus 82 G~icl~~l~---~~W~p~~~i~~il~~~i~~ll~~p~ 115 (183)
-+|||+|.+ +.|.|+|+|++.|+++|-.|=..|+
T Consensus 89 kKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt~p~ 125 (314)
T KOG0428|consen 89 KKICLSISGYHPETWQPSWSIRTALLALIGFMPTKPE 125 (314)
T ss_pred ceEEEEecCCCccccCcchhHHHHHHHHHccccCCCC
Confidence 589999975 8899999999999985555545554
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.2e-16 Score=147.90 Aligned_cols=108 Identities=23% Similarity=0.508 Sum_probs=95.4
Q ss_pred HHHHHHHHHh----c---CCCCcEEEeecCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCceeEecc--cccc
Q 030092 5 SKRREMDLMK----L---MMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNK--IYHP 75 (183)
Q Consensus 5 ~kRl~kEl~~----l---~~~gi~v~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~--i~HP 75 (183)
.+|+++.... | .+.||.|...++.+....+.|.||.||||..|.|.|.|.||.+||..||.|...+. .+.|
T Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~np 928 (1101)
T KOG0895|consen 849 EAQWAKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNP 928 (1101)
T ss_pred HHHHHHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCc
Confidence 3466665543 2 67899999999999999999999999999999999999999999999999999985 5999
Q ss_pred eeeCCCCeeEccCCC-------CCCCCccchHhHHHHHHHHhhcCC
Q 030092 76 NIDEMSGSVCLDVIN-------QTWSPMFDLVNVFEVFLPQLLLYP 114 (183)
Q Consensus 76 nV~~~~G~icl~~l~-------~~W~p~~~i~~il~~~i~~ll~~p 114 (183)
|.|. .|+||+++|+ +.|+|+-+|.++|.+ ||.|+.+-
T Consensus 929 nly~-~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s-~q~l~l~~ 972 (1101)
T KOG0895|consen 929 NLYE-DGKVCLSLLNTWHGRGNEVWNPSSSILQVLVS-IQGLVLNE 972 (1101)
T ss_pred cccc-ccceehhhhccccCCCccccCcchhHHHHHHH-hhhhhccc
Confidence 9995 9999999996 679999999999988 99997643
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.7e-14 Score=135.44 Aligned_cols=109 Identities=26% Similarity=0.539 Sum_probs=100.2
Q ss_pred HHHHHHHHHHhc---CCCCcEEEeecCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCceeEecc---ccccee
Q 030092 4 PSKRREMDLMKL---MMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNK---IYHPNI 77 (183)
Q Consensus 4 ~~kRl~kEl~~l---~~~gi~v~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~---i~HPnV 77 (183)
-.+|+++|+.-+ .+.|+.+.+.+..+....+.|.||.||||++|+|.|.|.||..||..||.|.++|. .+.||.
T Consensus 283 ~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNl 362 (1101)
T KOG0895|consen 283 WSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNL 362 (1101)
T ss_pred hHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCc
Confidence 368999999876 67899999999999999999999999999999999999999999999999999987 699999
Q ss_pred eCCCCeeEccCCC-------CCCCCc-cchHhHHHHHHHHhhcCC
Q 030092 78 DEMSGSVCLDVIN-------QTWSPM-FDLVNVFEVFLPQLLLYP 114 (183)
Q Consensus 78 ~~~~G~icl~~l~-------~~W~p~-~~i~~il~~~i~~ll~~p 114 (183)
|. +|+||+++|. +.|+|. .+|.++|.. ||.++.+-
T Consensus 363 Yn-~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~s-IQ~Li~~e 405 (1101)
T KOG0895|consen 363 YN-DGKVCLSLLGTWTGSRREKWTPNGSSLLQVLES-IQGLILNE 405 (1101)
T ss_pred cc-CceEEeeeeeecccccccCCCccccchhhhhhh-hhhhhccc
Confidence 95 9999999984 679999 889999988 99998754
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=3e-14 Score=105.52 Aligned_cols=107 Identities=18% Similarity=0.279 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhc----CCCCcEEEeecC-C--cceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCceeEecccccce
Q 030092 4 PSKRREMDLMKL----MMSDYKVEMIND-G--IQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPN 76 (183)
Q Consensus 4 ~~kRl~kEl~~l----~~~gi~v~~~~~-~--~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 76 (183)
+.-||.+||.+- .+..++....++ + +..|.++|.||+.|+||+.+|.++|.+.++||..||+|+|.+++.-+.
T Consensus 6 rnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~g 85 (138)
T KOG0896|consen 6 RNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNG 85 (138)
T ss_pred cchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecc
Confidence 567888888653 333344444433 2 779999999999999999999999999999999999999999999999
Q ss_pred eeCCCCeeEccCC--CCCCCCccchHhHHHHHHHHhh
Q 030092 77 IDEMSGSVCLDVI--NQTWSPMFDLVNVFEVFLPQLL 111 (183)
Q Consensus 77 V~~~~G~icl~~l--~~~W~p~~~i~~il~~~i~~ll 111 (183)
|+..+|.|.-.-+ -.+|+..++++.+|.. +..++
T Consensus 86 vn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~-lr~~m 121 (138)
T KOG0896|consen 86 VNSSNGVVDPRDITVLARWQRSYSIKMVLGQ-LRKEM 121 (138)
T ss_pred cccCCCccCccccchhhcccccchhhHHHHh-hhHHH
Confidence 9988888865433 3789999999999988 55443
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=3e-07 Score=66.63 Aligned_cols=92 Identities=15% Similarity=0.310 Sum_probs=64.5
Q ss_pred EEEEEEcCCCCCCCCCceeEecccccceeeCCCCeeEccCCC-CCCCCccchHhHHHHHHHHhhcCCC--CCCCccHHHH
Q 030092 49 WRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVIN-QTWSPMFDLVNVFEVFLPQLLLYPN--PSDPLNGEAA 125 (183)
Q Consensus 49 f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~G~icl~~l~-~~W~p~~~i~~il~~~i~~ll~~p~--~~~p~n~ea~ 125 (183)
..+.+.|+.+||+.||.+|...|+-.-.--..+|.||+.+|. ++|+.+++++.++++ |..++..-. ...+++.+-.
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~q-iaatlVkG~~ri~~~a~k~sk 91 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQ-IAATLVKGGARIEFPAEKSSK 91 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHH-HHHHhhccceeEecCcchhhh
Confidence 467788999999999999987765433333357899999996 789999999999988 666665543 3445554433
Q ss_pred HHH--HhCHHHHHHHHHHH
Q 030092 126 ALL--MRDRAAYEQRVKEY 142 (183)
Q Consensus 126 ~~~--~~~~~~f~~~~r~~ 142 (183)
+| .+-.+.|+..++-.
T Consensus 92 -~~s~~qa~~sfksLv~~h 109 (122)
T KOG0897|consen 92 -LYSHSQAQQSFKSLVQIH 109 (122)
T ss_pred -HhhHHHHHHHHHHHHHHH
Confidence 44 33344555555543
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.30 E-value=3.2e-06 Score=63.60 Aligned_cols=66 Identities=26% Similarity=0.631 Sum_probs=58.4
Q ss_pred CCCEEEEEEEcCCCCCCCCCceeEeccc---ccceeeCCCCeeEc---cCCCCCCCCccchHhHHHHHHHHhhc
Q 030092 45 HGGVWRIRVELPDAYPYKSPSIGFVNKI---YHPNIDEMSGSVCL---DVINQTWSPMFDLVNVFEVFLPQLLL 112 (183)
Q Consensus 45 egg~f~~~i~fp~~YP~~pP~v~f~t~i---~HPnV~~~~G~icl---~~l~~~W~p~~~i~~il~~~i~~ll~ 112 (183)
.|+.+.+.|.||+.||..||.|....+. +-|+|+. +|.+|+ ...-+.|.|...+..+|.. ...+|.
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~-~G~LCl~~~~~~~D~~~P~~~~~~~l~~-a~~lL~ 105 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVES-DGKLCLLDEELVLDPWDPEGIIADCLER-AIRLLE 105 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcC-CCeEEEecCCcccCccCHHHHHHHHHHH-HHHHHH
Confidence 6899999999999999999999998654 7899996 999999 7777899999999999988 666665
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=97.77 E-value=5.2e-05 Score=56.25 Aligned_cols=76 Identities=25% Similarity=0.530 Sum_probs=49.2
Q ss_pred cceEEEEEeCCCCCCCCCCEE--EEEEEcCCCCCCCCCceeEeccc-----ccceeeCCCCeeEccCCCCCCCC-ccchH
Q 030092 29 IQEFYVHFQGPNESPYHGGVW--RIRVELPDAYPYKSPSIGFVNKI-----YHPNIDEMSGSVCLDVINQTWSP-MFDLV 100 (183)
Q Consensus 29 ~~~w~~~i~Gp~~tpyegg~f--~~~i~fp~~YP~~pP~v~f~t~i-----~HPnV~~~~G~icl~~l~~~W~p-~~~i~ 100 (183)
+....++|. -.|.|..| .+.|.+|.+||..||.|...... -+.+|+. +|+|.+..|. +|++ ..+|.
T Consensus 32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~-~G~v~~pyL~-~W~~~~s~L~ 105 (121)
T PF05743_consen 32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDS-NGRVYLPYLQ-NWNPPSSNLV 105 (121)
T ss_dssp EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-T-TSBB-SHHHH-T--TTTS-HH
T ss_pred EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECC-CCCEeCchhc-cCCCCCCCHH
Confidence 445555553 24777777 66777899999999999887532 2449994 9999988775 6766 77888
Q ss_pred hHHHHHHHHhh
Q 030092 101 NVFEVFLPQLL 111 (183)
Q Consensus 101 ~il~~~i~~ll 111 (183)
.++.. ++..|
T Consensus 106 ~lv~~-l~~~F 115 (121)
T PF05743_consen 106 DLVQE-LQAVF 115 (121)
T ss_dssp HHHHH-HHHCC
T ss_pred HHHHH-HHHHH
Confidence 77766 55554
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=97.01 E-value=0.0036 Score=47.42 Aligned_cols=95 Identities=16% Similarity=0.285 Sum_probs=45.7
Q ss_pred HHHHHHHHHhc----------CCCCcEEEeecCCcceEEEEEeCCCCCCCCCCEEE--EEEEcCCCCCCCCCceeEeccc
Q 030092 5 SKRREMDLMKL----------MMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWR--IRVELPDAYPYKSPSIGFVNKI 72 (183)
Q Consensus 5 ~kRl~kEl~~l----------~~~gi~v~~~~~~~~~w~~~i~Gp~~tpyegg~f~--~~i~fp~~YP~~pP~v~f~t~i 72 (183)
.+||..|+..| -...++++ .+.+=++|.+.-.- .|+--.|. +++.+|..||..||.|..-.--
T Consensus 26 ~~RLKEEy~aLI~Yv~~nK~~DndWF~le-sn~~GT~W~GkCW~----~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeLd 100 (161)
T PF08694_consen 26 VQRLKEEYQALIKYVENNKENDNDWFRLE-SNKEGTRWFGKCWY----IHNLLKYEFDLEFDIPVTYPTTAPEIALPELD 100 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---EEEE-E-TTSSEEEEEEEE----EETTEEEEEEEEEE--TTTTTS----B-GGGT
T ss_pred HHHHHHHHHHHHHHHHhcccccCCeEEec-cCCCCCccccEEEE----EeeeeeEEEeeecCCCccCCCCCcceeccccC
Confidence 58999999876 12245555 33445666554321 12334444 4555699999999999875311
Q ss_pred -ccceeeCCCCeeEccCCC-CCC---CCccchHhHHHH
Q 030092 73 -YHPNIDEMSGSVCLDVIN-QTW---SPMFDLVNVFEV 105 (183)
Q Consensus 73 -~HPnV~~~~G~icl~~l~-~~W---~p~~~i~~il~~ 105 (183)
-..-.| .+|+||++... .-| .|.++|...|..
T Consensus 101 GKTaKMY-RGGkIClt~HFkPLWakN~PkfGIaHalaL 137 (161)
T PF08694_consen 101 GKTAKMY-RGGKICLTDHFKPLWAKNVPKFGIAHALAL 137 (161)
T ss_dssp TT-SSBC-CCCBB---TTHHHHHHCTTTT--HHHHHHH
T ss_pred Cchhhhh-cCceEeeecccchhhhhcCCchhHHHHHHh
Confidence 111223 38999998864 345 567777777643
No 29
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.007 Score=51.91 Aligned_cols=79 Identities=25% Similarity=0.443 Sum_probs=57.1
Q ss_pred cceEEEEEeCCCCCCCCCCEE--EEEEEcCCCCCCCCCceeEecc-----cccceeeCCCCeeEccCCCCCC-CCccchH
Q 030092 29 IQEFYVHFQGPNESPYHGGVW--RIRVELPDAYPYKSPSIGFVNK-----IYHPNIDEMSGSVCLDVINQTW-SPMFDLV 100 (183)
Q Consensus 29 ~~~w~~~i~Gp~~tpyegg~f--~~~i~fp~~YP~~pP~v~f~t~-----i~HPnV~~~~G~icl~~l~~~W-~p~~~i~ 100 (183)
++...++|. ++|.|..| .+.|.+.+.||+.||.+..... -.|-+|+. +|.|.|..|. .| -|+..|.
T Consensus 52 ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~-nG~V~LPYLh-~W~~pssdLv 125 (365)
T KOG2391|consen 52 LLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDP-NGKVYLPYLH-NWDPPSSDLV 125 (365)
T ss_pred hhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCC-CCeEechhhc-cCCCccchHH
Confidence 555555553 46777766 5677789999999999977742 14899995 9999999996 57 5566777
Q ss_pred hHHHHHHHHhhcCC
Q 030092 101 NVFEVFLPQLLLYP 114 (183)
Q Consensus 101 ~il~~~i~~ll~~p 114 (183)
.+++. +...|.++
T Consensus 126 ~Liq~-l~a~f~~~ 138 (365)
T KOG2391|consen 126 GLIQE-LIAAFSED 138 (365)
T ss_pred HHHHH-HHHHhcCC
Confidence 77766 55555543
No 30
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=95.79 E-value=0.021 Score=40.55 Aligned_cols=66 Identities=17% Similarity=0.281 Sum_probs=37.5
Q ss_pred HHHHHHHHhc---CCCCcEEEeecCCcceEEEEEeC--CCCCCCCCCEEEEEEEcCCCCCCCCCceeEeccc
Q 030092 6 KRREMDLMKL---MMSDYKVEMINDGIQEFYVHFQG--PNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKI 72 (183)
Q Consensus 6 kRl~kEl~~l---~~~gi~v~~~~~~~~~w~~~i~G--p~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i 72 (183)
.+++.|+..| -.... +.........+.+.+.+ ...+.-....+.+.+.||++||..+|.|.+.+..
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 3556666655 22222 22233344556666622 2334445668999999999999999999877653
No 31
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=95.58 E-value=0.19 Score=37.33 Aligned_cols=57 Identities=19% Similarity=0.322 Sum_probs=45.0
Q ss_pred hcCCCCcEEEeecCCcceEEEEEeC--CCCCCCCCCEEEEEEEcCCCCCCCCCceeEecc
Q 030092 14 KLMMSDYKVEMINDGIQEFYVHFQG--PNESPYHGGVWRIRVELPDAYPYKSPSIGFVNK 71 (183)
Q Consensus 14 ~l~~~gi~v~~~~~~~~~w~~~i~G--p~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 71 (183)
-|...|+.++...+.-..|.+ |.| .+.+.|.+..-.+-|.+|..||..+|-+.+..|
T Consensus 8 ~L~~~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P 66 (122)
T PF14462_consen 8 YLDGRGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYP 66 (122)
T ss_pred HHHhcCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECC
Confidence 344558888887777777876 555 477789999999999999999999998766654
No 32
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=94.39 E-value=0.31 Score=34.11 Aligned_cols=27 Identities=30% Similarity=0.617 Sum_probs=22.8
Q ss_pred CCCEEEEEEEcCCCCCCCCCceeEecc
Q 030092 45 HGGVWRIRVELPDAYPYKSPSIGFVNK 71 (183)
Q Consensus 45 egg~f~~~i~fp~~YP~~pP~v~f~t~ 71 (183)
....+.+.|.||.+||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345689999999999999999988763
No 33
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.36 E-value=0.071 Score=39.90 Aligned_cols=95 Identities=16% Similarity=0.381 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCCCCcEEEeecCCcceEEEEEeCCCCCCCCCC----------EEEEEEEcCCCCCCCCCceeEeccc-c
Q 030092 5 SKRREMDLMKLMMSDYKVEMINDGIQEFYVHFQGPNESPYHGG----------VWRIRVELPDAYPYKSPSIGFVNKI-Y 73 (183)
Q Consensus 5 ~kRl~kEl~~l~~~gi~v~~~~~~~~~w~~~i~Gp~~tpyegg----------~f~~~i~fp~~YP~~pP~v~f~t~i-~ 73 (183)
.+||..|++.|.. +|+-..++-..|.-.=-.+.||-|-|. .|.+++.+|-.||..+|.|....-- -
T Consensus 29 vqrlkeey~sli~---yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpeldgk 105 (167)
T KOG3357|consen 29 VQRLKEEYQSLIA---YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPELDGK 105 (167)
T ss_pred HHHHHHHHHHHHH---HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccccccCch
Confidence 5889999887621 111111222233322234667766663 2445555699999999998654210 0
Q ss_pred cceeeCCCCeeEccCC-CCCCC---CccchHhHH
Q 030092 74 HPNIDEMSGSVCLDVI-NQTWS---PMFDLVNVF 103 (183)
Q Consensus 74 HPnV~~~~G~icl~~l-~~~W~---p~~~i~~il 103 (183)
.--.+ ..|+||+.-. +.-|. |.++|...+
T Consensus 106 takmy-rggkiclt~hfkplwarn~pkfgiaha~ 138 (167)
T KOG3357|consen 106 TAKMY-RGGKICLTDHFKPLWARNVPKFGIAHAM 138 (167)
T ss_pred hhhhh-cCceEeeccccchhhhhcCcchhHHHHH
Confidence 11122 3799999654 45574 445555554
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=92.22 E-value=0.22 Score=38.81 Aligned_cols=61 Identities=21% Similarity=0.380 Sum_probs=44.2
Q ss_pred EEEEEcCCCCCCCCCceeEeccc---ccceeeCCC-----CeeEccCCC-CCCCCccchHhHHHHHHHHhhc
Q 030092 50 RIRVELPDAYPYKSPSIGFVNKI---YHPNIDEMS-----GSVCLDVIN-QTWSPMFDLVNVFEVFLPQLLL 112 (183)
Q Consensus 50 ~~~i~fp~~YP~~pP~v~f~t~i---~HPnV~~~~-----G~icl~~l~-~~W~p~~~i~~il~~~i~~ll~ 112 (183)
.+.|.|+.+||..+|.|.++... .+|+++. . ..+|+---. ..|.+..++..+|.. |...|.
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~-~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~r-l~~Wl~ 125 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNP-GPEGEPVSLCLYEGPWSEWRPSWGPEGFLDR-LFDWLR 125 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCC-CCCCCCccceEecCCHHHhhhccCHHHHHHH-HHHHHH
Confidence 56789999999999988777643 3566763 3 578986543 568888888888866 555543
No 35
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.64 E-value=2 Score=41.02 Aligned_cols=65 Identities=22% Similarity=0.366 Sum_probs=44.5
Q ss_pred HHHHHHHHHhc--CCCCcEEEeecCCcceEEEEEeCCCCCCCCCCE-EEEEEEcCCCCCCC-CCceeEec
Q 030092 5 SKRREMDLMKL--MMSDYKVEMINDGIQEFYVHFQGPNESPYHGGV-WRIRVELPDAYPYK-SPSIGFVN 70 (183)
Q Consensus 5 ~kRl~kEl~~l--~~~gi~v~~~~~~~~~w~~~i~Gp~~tpyegg~-f~~~i~fp~~YP~~-pP~v~f~t 70 (183)
.+-|..|+.-+ ..+.+.++-.+-.-....+.+.||---- .|-+ .++.|.||.+||.+ +|++.|..
T Consensus 422 pQnLgeE~S~Ig~k~~nV~fEkidva~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~ 490 (1081)
T KOG0309|consen 422 PQNLGEEFSLIGVKIRNVNFEKIDVADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFEN 490 (1081)
T ss_pred hhhHHhHHhHhhccccccceEeeccccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEec
Confidence 35577777665 3456666655555566777787764333 3434 48999999999997 68999885
No 36
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=86.04 E-value=1.6 Score=37.19 Aligned_cols=80 Identities=18% Similarity=0.317 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCCCCcEEEeecCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCceeEecccccceeeCCCCeeE
Q 030092 6 KRREMDLMKLMMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVC 85 (183)
Q Consensus 6 kRl~kEl~~l~~~gi~v~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~G~ic 85 (183)
.+|.+|+..+.-.-..-...+.++....+.+.. +.....++|.++.+||..+|.+..--++ ..+
T Consensus 102 s~ll~EIe~IGW~kl~~i~~d~~ls~i~l~~~D------~~R~H~l~l~l~~~yp~~~p~~~~~~P~-~~~--------- 165 (291)
T PF09765_consen 102 SNLLKEIEAIGWDKLVQIQFDDDLSTIKLKIFD------SSRQHYLELKLPSNYPFEPPSCSLDLPI-PFS--------- 165 (291)
T ss_dssp -CHHHHHHHHHCGCCEEEEE-CCCSEEEEEEET------TCEEEEEEEETTTTTTTSEEEECS-TTS--HH---------
T ss_pred HHHHHHHHHhccccceEEecCCCccEEEEEEEc------CCceEEEEEEECCCCCCCCceeeCCCCc-chh---------
Confidence 567777777744333333346688888888873 2257889999999999999975422221 111
Q ss_pred ccCCCCCCCC-ccchHhHHHHH
Q 030092 86 LDVINQTWSP-MFDLVNVFEVF 106 (183)
Q Consensus 86 l~~l~~~W~p-~~~i~~il~~~ 106 (183)
..|.+ ..++..++..+
T Consensus 166 -----~~w~~~~ssL~~v~~qF 182 (291)
T PF09765_consen 166 -----LSWSPSQSSLKDVVQQF 182 (291)
T ss_dssp -----HHHHCHT-SHHHHHHHH
T ss_pred -----hhhcccccCHHHHHHHH
Confidence 24777 67788887663
No 37
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=79.38 E-value=5.7 Score=32.24 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=19.4
Q ss_pred EEEEEEEcCCCCCCCCCceeEe
Q 030092 48 VWRIRVELPDAYPYKSPSIGFV 69 (183)
Q Consensus 48 ~f~~~i~fp~~YP~~pP~v~f~ 69 (183)
.+.+.+.++.+||..+|.|.+.
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred cEEEEEEccCCCCCCCcceecc
Confidence 7889999999999999999443
No 38
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=72.29 E-value=2.6 Score=35.34 Aligned_cols=6 Identities=17% Similarity=0.490 Sum_probs=2.8
Q ss_pred HHHHHH
Q 030092 8 REMDLM 13 (183)
Q Consensus 8 l~kEl~ 13 (183)
++|+++
T Consensus 18 rqk~ir 23 (314)
T PF06524_consen 18 RQKEIR 23 (314)
T ss_pred HHHHHH
Confidence 444444
No 39
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=66.85 E-value=22 Score=25.11 Aligned_cols=29 Identities=14% Similarity=0.146 Sum_probs=12.5
Q ss_pred CCccHHHHHHHHhCHHHHHHHHHHHHHHHcc
Q 030092 118 DPLNGEAAALLMRDRAAYEQRVKEYREKYAK 148 (183)
Q Consensus 118 ~p~n~ea~~~~~~~~~~f~~~~r~~~~~~a~ 148 (183)
.|++.++-- ..--+++....+.-++|...
T Consensus 22 ~pc~dE~EL--~~~Eq~~q~Wl~sI~ekd~n 50 (92)
T PF15243_consen 22 RPCVDETEL--QQQEQQHQAWLQSIAEKDNN 50 (92)
T ss_pred CccchHHHH--HHHHHHHHHHHHHHHHhccC
Confidence 455555532 22233333444444444444
No 40
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=59.14 E-value=6 Score=38.82 Aligned_cols=6 Identities=50% Similarity=1.104 Sum_probs=2.3
Q ss_pred CCCCEE
Q 030092 44 YHGGVW 49 (183)
Q Consensus 44 yegg~f 49 (183)
|-||.|
T Consensus 1269 ~~~G~F 1274 (1516)
T KOG1832|consen 1269 YGGGGF 1274 (1516)
T ss_pred cccccc
Confidence 334443
No 41
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=56.25 E-value=15 Score=31.80 Aligned_cols=28 Identities=25% Similarity=0.619 Sum_probs=23.3
Q ss_pred CCEEEEEEEcCCCCCCCCCceeEeccccc
Q 030092 46 GGVWRIRVELPDAYPYKSPSIGFVNKIYH 74 (183)
Q Consensus 46 gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 74 (183)
+-.|-++|.+|..||...|.++|++ +||
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS-~yH 332 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQS-VYH 332 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEe-ecc
Confidence 4468888899999999999999987 344
No 42
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=55.62 E-value=15 Score=33.06 Aligned_cols=6 Identities=0% Similarity=0.268 Sum_probs=2.3
Q ss_pred cchHhH
Q 030092 97 FDLVNV 102 (183)
Q Consensus 97 ~~i~~i 102 (183)
+||...
T Consensus 26 lTi~Dt 31 (458)
T PF10446_consen 26 LTINDT 31 (458)
T ss_pred ccHHHH
Confidence 333333
No 43
>KOG4032 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.48 E-value=67 Score=25.51 Aligned_cols=14 Identities=14% Similarity=0.135 Sum_probs=8.2
Q ss_pred hCHHHHHHHHHHHH
Q 030092 130 RDRAAYEQRVKEYR 143 (183)
Q Consensus 130 ~~~~~f~~~~r~~~ 143 (183)
.|...+.+...++.
T Consensus 104 ~N~~~ieells~l~ 117 (184)
T KOG4032|consen 104 GNYAIIEELLSKLP 117 (184)
T ss_pred ccHHHHHHHHHHcc
Confidence 36666666665555
No 44
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=46.38 E-value=29 Score=26.18 Aligned_cols=25 Identities=36% Similarity=0.667 Sum_probs=22.6
Q ss_pred CCEEEEEEEcCCCCC-CCCCceeEec
Q 030092 46 GGVWRIRVELPDAYP-YKSPSIGFVN 70 (183)
Q Consensus 46 gg~f~~~i~fp~~YP-~~pP~v~f~t 70 (183)
.|.|.|.-.+|-.|| ..||.|.|.-
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 589999999999999 9999998874
No 45
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=43.71 E-value=32 Score=27.28 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.7
Q ss_pred CCEEEEEEEcCCCCCCCCCceeEec
Q 030092 46 GGVWRIRVELPDAYPYKSPSIGFVN 70 (183)
Q Consensus 46 gg~f~~~i~fp~~YP~~pP~v~f~t 70 (183)
.|.|.|.-.||--||..+|.|.|.-
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEEE
Confidence 5899999999999999999998874
No 46
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=42.61 E-value=70 Score=21.91 Aligned_cols=42 Identities=12% Similarity=0.233 Sum_probs=28.9
Q ss_pred ceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCceeEecccc
Q 030092 30 QEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIY 73 (183)
Q Consensus 30 ~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 73 (183)
.+|.+-+.|+.+.--..-+=++...+.+.|+. |...+..+-|
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPF 43 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPF 43 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCC
Confidence 57999999988765556677888889999887 6666655533
No 47
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=42.29 E-value=28 Score=32.63 Aligned_cols=11 Identities=18% Similarity=0.241 Sum_probs=4.6
Q ss_pred HHHHHHHcccc
Q 030092 140 KEYREKYAKAE 150 (183)
Q Consensus 140 r~~~~~~a~~~ 150 (183)
+....+|...+
T Consensus 125 e~~i~~yrenP 135 (595)
T PF05470_consen 125 EAQIAKYRENP 135 (595)
T ss_pred HHHHHHHHhCC
Confidence 33344444443
No 48
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=37.69 E-value=17 Score=35.87 Aligned_cols=7 Identities=29% Similarity=0.453 Sum_probs=3.6
Q ss_pred cccccee
Q 030092 71 KIYHPNI 77 (183)
Q Consensus 71 ~i~HPnV 77 (183)
..||||-
T Consensus 1272 G~FHP~g 1278 (1516)
T KOG1832|consen 1272 GGFHPSG 1278 (1516)
T ss_pred ccccCCC
Confidence 3466653
No 49
>PF08595 RXT2_N: RXT2-like, N-terminal; InterPro: IPR013904 The entry represents the N-terminal region of RXT2-like proteins. In Saccharomyces cerevisiae (Baker's yeast), RXT2 has been demonstrated to be involved in conjugation with cellular fusion (mating) and invasive growth []. A high throughput localisation study has localised RXT2 to the nucleus [].
Probab=36.47 E-value=22 Score=27.32 Aligned_cols=6 Identities=17% Similarity=0.147 Sum_probs=2.3
Q ss_pred hcCCCC
Q 030092 177 MAGKAD 182 (183)
Q Consensus 177 ~~~~~~ 182 (183)
++++.+
T Consensus 78 ~~~d~n 83 (149)
T PF08595_consen 78 DAADEN 83 (149)
T ss_pred hhhccC
Confidence 333344
No 50
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=36.47 E-value=73 Score=26.63 Aligned_cols=45 Identities=13% Similarity=0.405 Sum_probs=29.4
Q ss_pred CcceEEEEEeCCCCCCCCC----CEEEEEEEcC-----CCCCCCCCceeEecccc
Q 030092 28 GIQEFYVHFQGPNESPYHG----GVWRIRVELP-----DAYPYKSPSIGFVNKIY 73 (183)
Q Consensus 28 ~~~~w~~~i~Gp~~tpyeg----g~f~~~i~fp-----~~YP~~pP~v~f~t~i~ 73 (183)
|..-|.+... ..+|--.. +.|+.+++++ -+-||+||+|+.+++-|
T Consensus 101 Dp~PWkl~Yr-V~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~f 154 (276)
T PF00845_consen 101 DPIPWKLYYR-VEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQF 154 (276)
T ss_pred CCCCeEEEEE-eecCccccceeeeeeeceeeecccccccccccCCCceEeeeccc
Confidence 4445766665 33333322 3467777764 78899999999998744
No 51
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=35.00 E-value=55 Score=25.19 Aligned_cols=25 Identities=36% Similarity=0.729 Sum_probs=22.3
Q ss_pred CCEEEEEEEcCCCCC-----CCCCceeEec
Q 030092 46 GGVWRIRVELPDAYP-----YKSPSIGFVN 70 (183)
Q Consensus 46 gg~f~~~i~fp~~YP-----~~pP~v~f~t 70 (183)
.|.|.|.-.+|--|| ..||.|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 488999999999999 8999998874
No 52
>smart00340 HALZ homeobox associated leucin zipper.
Probab=30.88 E-value=35 Score=20.56 Aligned_cols=12 Identities=17% Similarity=0.407 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhc
Q 030092 4 PSKRREMDLMKL 15 (183)
Q Consensus 4 ~~kRl~kEl~~l 15 (183)
-.+||++|+..|
T Consensus 20 eNrRL~ke~~eL 31 (44)
T smart00340 20 ENRRLQKEVQEL 31 (44)
T ss_pred HHHHHHHHHHHH
Confidence 368999999876
No 53
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.79 E-value=1.4e+02 Score=29.77 Aligned_cols=21 Identities=14% Similarity=0.023 Sum_probs=10.4
Q ss_pred CCCccchHhHHHHHHHHhhcCC
Q 030092 93 WSPMFDLVNVFEVFLPQLLLYP 114 (183)
Q Consensus 93 W~p~~~i~~il~~~i~~ll~~p 114 (183)
|...+..+-.++. |-.++.-+
T Consensus 830 ~~~~HDkKlcvL~-l~tli~l~ 850 (1010)
T KOG1991|consen 830 FKKVHDKKLCVLG-LLTLISLG 850 (1010)
T ss_pred HHhhhhHHHHHHH-HHHHHhcc
Confidence 3333444444444 66666654
No 54
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=29.68 E-value=43 Score=27.17 Aligned_cols=55 Identities=25% Similarity=0.399 Sum_probs=41.2
Q ss_pred CCCCceeEecccccceee-CCCCeeEccCCCCCC--CCccchHhHHHHHHHHhhcCCCC
Q 030092 61 YKSPSIGFVNKIYHPNID-EMSGSVCLDVINQTW--SPMFDLVNVFEVFLPQLLLYPNP 116 (183)
Q Consensus 61 ~~pP~v~f~t~i~HPnV~-~~~G~icl~~l~~~W--~p~~~i~~il~~~i~~ll~~p~~ 116 (183)
+.||-|.|-.+.|...|+ ++.|-|--.+.+.+| .|+-.+.+.|.. |-.++-.|+.
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkr-if~~lg~p~e 224 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKR-IFRLLGTPTE 224 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHH-HHHHhCCCcc
Confidence 468999999999999998 445655555666666 678888888877 7777777653
No 55
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=28.72 E-value=1.3e+02 Score=28.35 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=19.0
Q ss_pred HHhCHHHHHHHHHHHHHHHcccccc
Q 030092 128 LMRDRAAYEQRVKEYREKYAKAEDI 152 (183)
Q Consensus 128 ~~~~~~~f~~~~r~~~~~~a~~~~~ 152 (183)
...|...|.+.+++...........
T Consensus 179 ~~~dQ~afa~~~~~~l~~l~~~~~~ 203 (600)
T TIGR01651 179 AIDDQQAFARVVREMLRSMELAEEM 203 (600)
T ss_pred hhhhHHHHHHHHHHHHHhhcccccc
Confidence 3568899999999988877766533
No 56
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=28.30 E-value=20 Score=30.07 Aligned_cols=11 Identities=18% Similarity=0.238 Sum_probs=6.7
Q ss_pred CCEEEEEEEcC
Q 030092 46 GGVWRIRVELP 56 (183)
Q Consensus 46 gg~f~~~i~fp 56 (183)
+|++-+.+.-+
T Consensus 57 ~g~~yLymKt~ 67 (303)
T KOG3064|consen 57 NGVLYLYMKTI 67 (303)
T ss_pred CCEEEEEEech
Confidence 56666666554
No 57
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=27.78 E-value=76 Score=29.82 Aligned_cols=24 Identities=21% Similarity=0.509 Sum_probs=12.5
Q ss_pred HHHHHHHHHHccc-cccccCCCCCC
Q 030092 137 QRVKEYREKYAKA-EDIEAAPDENS 160 (183)
Q Consensus 137 ~~~r~~~~~~a~~-~~~~~~~~~~~ 160 (183)
+++|++.+.|... ...+++|+..+
T Consensus 115 QklkK~~k~~e~~i~~yrenPe~~~ 139 (595)
T PF05470_consen 115 QKLKKYNKEYEAQIAKYRENPEAFE 139 (595)
T ss_pred HHHHhhhhhHHHHHHHHHhCCcccc
Confidence 4566666655543 34445565433
No 58
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=27.71 E-value=20 Score=34.75 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=0.0
Q ss_pred CCEEEEEEEcCCCCCCCCCceeEecc
Q 030092 46 GGVWRIRVELPDAYPYKSPSIGFVNK 71 (183)
Q Consensus 46 gg~f~~~i~fp~~YP~~pP~v~f~t~ 71 (183)
-.+=.+.|.+|.+||..+|.+.+.+.
T Consensus 713 P~VPPl~l~vP~~YP~~sp~~~~~~~ 738 (799)
T PF09606_consen 713 PSVPPLRLTVPADYPRQSPQCSVDRD 738 (799)
T ss_dssp --------------------------
T ss_pred CCCCCeeEeCCCCCCccCCcCcccHH
Confidence 35667889999999999999877653
No 59
>PRK11700 hypothetical protein; Provisional
Probab=26.69 E-value=3.3e+02 Score=21.72 Aligned_cols=96 Identities=15% Similarity=0.341 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhc-------CCCC--cEEEeecC--CcceEEEEE---eCCCCCCC-CCCEEEEEEEcCC-----------
Q 030092 4 PSKRREMDLMKL-------MMSD--YKVEMIND--GIQEFYVHF---QGPNESPY-HGGVWRIRVELPD----------- 57 (183)
Q Consensus 4 ~~kRl~kEl~~l-------~~~g--i~v~~~~~--~~~~w~~~i---~Gp~~tpy-egg~f~~~i~fp~----------- 57 (183)
.++|+...+.+. ..+| |.+.-... .+..|.+-+ .=|.+.-| .-|.=|+++.+|-
T Consensus 52 tAe~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~w~I~cvELP~P~~k~Yp~eGWEHIElVlp~~~~t~~~~~~a 131 (187)
T PRK11700 52 TAERWRQGFLQCGELLSENIINGRPICLFELDQPLQVGHWSIDCVELPYPGEKRYPHEGWEHIELVLPGDPETLDARALA 131 (187)
T ss_pred HHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCCCCCCCCCceEEEEEecCCcchHHHHHHH
Confidence 467777777653 3344 22222222 334454433 33544444 4577788888873
Q ss_pred ---CCCCCCCceeEec--------ccccceeeCCCCeeEccCCCCCCCCccchHhHHHH
Q 030092 58 ---AYPYKSPSIGFVN--------KIYHPNIDEMSGSVCLDVINQTWSPMFDLVNVFEV 105 (183)
Q Consensus 58 ---~YP~~pP~v~f~t--------~i~HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~ 105 (183)
+.|..+|-|++.. +.-.|-|--+.|.||+.+-. ++|+.|+.+
T Consensus 132 ll~~~~l~~~gikvK~SsPkge~ERL~NPTlAv~~~~vcIK~HP------~slk~IV~S 184 (187)
T PRK11700 132 LLSDEGLSLPGIKVKTSSPKGEGERLPNPTLAVTDGGICIKFHP------HSIKEIVAS 184 (187)
T ss_pred hccccccccCCcEEEecCCCccCccCCCCcEEEeeCCEEEEEcC------ccHHHHHHh
Confidence 3444556566554 46788888778999998764 778877744
No 60
>KOG3375 consensus Phosphoprotein/predicted coiled-coil protein [General function prediction only]
Probab=26.04 E-value=25 Score=27.03 Aligned_cols=18 Identities=22% Similarity=0.466 Sum_probs=10.8
Q ss_pred CCCccccccCCCCCCcch
Q 030092 159 NSSDEEMSEDEYNSSDDA 176 (183)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~ 176 (183)
..++.+++|++++|++|+
T Consensus 51 ~~ee~~~~~dssed~Ede 68 (174)
T KOG3375|consen 51 KKEESELDSDSSEDSEDE 68 (174)
T ss_pred chhhhcccccccchhhhH
Confidence 345556666666666665
No 61
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=24.95 E-value=1.4e+02 Score=29.10 Aligned_cols=19 Identities=16% Similarity=0.106 Sum_probs=11.8
Q ss_pred CccchHhHHHHHHHHhhcCC
Q 030092 95 PMFDLVNVFEVFLPQLLLYP 114 (183)
Q Consensus 95 p~~~i~~il~~~i~~ll~~p 114 (183)
.+..++-.|.. ++.++..-
T Consensus 790 ~s~HieF~l~W-~~~il~~h 808 (893)
T KOG0291|consen 790 NSPHIEFYLRW-LRAILTYH 808 (893)
T ss_pred cCchHHHHHHH-HHHHHHHh
Confidence 34556667766 77776643
No 62
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=24.84 E-value=1.1e+02 Score=26.69 Aligned_cols=43 Identities=23% Similarity=0.414 Sum_probs=34.7
Q ss_pred cceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCceeEec-cccccee
Q 030092 29 IQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVN-KIYHPNI 77 (183)
Q Consensus 29 ~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t-~i~HPnV 77 (183)
...+.+.| ||.|-..+-.|.|...||..||-+.|-. .-|+|-.
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~ 96 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDP 96 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCCh
Confidence 44566666 5889999999999999999999999973 3488843
No 63
>KOG3203 consensus Mitochondrial/chloroplast ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=24.75 E-value=36 Score=26.36 Aligned_cols=14 Identities=43% Similarity=0.876 Sum_probs=11.5
Q ss_pred ccccceeeCCCCeeEc
Q 030092 71 KIYHPNIDEMSGSVCL 86 (183)
Q Consensus 71 ~i~HPnV~~~~G~icl 86 (183)
|+|||+.| .|.+|+
T Consensus 50 PiYhP~~D--cGD~VV 63 (165)
T KOG3203|consen 50 PIYHPSTD--CGDHVV 63 (165)
T ss_pred CccCCccC--CCCEEE
Confidence 69999998 687765
No 64
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=24.03 E-value=1e+02 Score=24.58 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=20.7
Q ss_pred CCEEEEEEEcCCCCCC-----CCCceeEe
Q 030092 46 GGVWRIRVELPDAYPY-----KSPSIGFV 69 (183)
Q Consensus 46 gg~f~~~i~fp~~YP~-----~pP~v~f~ 69 (183)
.|.|.|.-.+|--||. .||.|.|.
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 4789999999999998 78887776
No 65
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=23.96 E-value=83 Score=20.14 Aligned_cols=15 Identities=20% Similarity=0.618 Sum_probs=9.5
Q ss_pred CCCCCccchHhHHHH
Q 030092 91 QTWSPMFDLVNVFEV 105 (183)
Q Consensus 91 ~~W~p~~~i~~il~~ 105 (183)
=+|.|.++|.++|..
T Consensus 36 LgW~p~~~L~~~i~~ 50 (62)
T PF13950_consen 36 LGWKPKYSLEDMIRD 50 (62)
T ss_dssp C----SSSHHHHHHH
T ss_pred hCCCcCCCHHHHHHH
Confidence 379999999999976
No 66
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=23.33 E-value=98 Score=26.73 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=21.8
Q ss_pred CEEEEEEEcCCCCCCCCCceeEecc
Q 030092 47 GVWRIRVELPDAYPYKSPSIGFVNK 71 (183)
Q Consensus 47 g~f~~~i~fp~~YP~~pP~v~f~t~ 71 (183)
-.+.+.+..+..||...|+|+...|
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4577888899999999999999865
No 67
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=23.11 E-value=2e+02 Score=18.80 Aligned_cols=44 Identities=25% Similarity=0.323 Sum_probs=35.4
Q ss_pred HHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHcccc
Q 030092 107 LPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKYAKAE 150 (183)
Q Consensus 107 i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~r~~~~~~a~~~ 150 (183)
|+.|+..-++...+..+|...+..--+.|...+-..+.++|..+
T Consensus 7 l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr 50 (72)
T cd07981 7 LQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAKHR 50 (72)
T ss_pred HHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55566555666779999999999999999999988888877654
No 68
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=23.05 E-value=81 Score=29.49 Aligned_cols=29 Identities=31% Similarity=0.807 Sum_probs=23.4
Q ss_pred CCCCCCEEEEEEEcCCCCCCC---CCceeEecc
Q 030092 42 SPYHGGVWRIRVELPDAYPYK---SPSIGFVNK 71 (183)
Q Consensus 42 tpyegg~f~~~i~fp~~YP~~---pP~v~f~t~ 71 (183)
+||.=|.|-+ +.+|++||+. -|-++|+|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 4677788876 4579999995 699999997
No 69
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=22.74 E-value=2.1e+02 Score=18.78 Aligned_cols=46 Identities=20% Similarity=0.327 Sum_probs=33.7
Q ss_pred HHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHcccccc
Q 030092 107 LPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKEYREKYAKAEDI 152 (183)
Q Consensus 107 i~~ll~~p~~~~p~n~ea~~~~~~~~~~f~~~~r~~~~~~a~~~~~ 152 (183)
|+.|+..-++...+.+++..++..=-..|...+-..+.+.|..+..
T Consensus 5 l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAKhR~s 50 (68)
T PF03847_consen 5 LQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAKHRKS 50 (68)
T ss_dssp HHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 6677777788888999999999999999999998888888876543
No 70
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=22.62 E-value=99 Score=25.98 Aligned_cols=31 Identities=29% Similarity=0.161 Sum_probs=27.1
Q ss_pred CccHHHHHHHHhCHHHHHHHHHHHHHHHccc
Q 030092 119 PLNGEAAALLMRDRAAYEQRVKEYREKYAKA 149 (183)
Q Consensus 119 p~n~ea~~~~~~~~~~f~~~~r~~~~~~a~~ 149 (183)
-.+.+|+..|..+++.|...+.+.+++.+.-
T Consensus 238 F~s~~aa~~F~~~P~~yi~~v~~~ar~~peL 268 (281)
T PF12018_consen 238 FSSREAAYRFAEDPERYIQAVLEKARKNPEL 268 (281)
T ss_pred eCCHHHHHHHHHCHHHHHHHHHHHHhhCHHH
Confidence 4678999999999999999999999987653
No 71
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=22.43 E-value=23 Score=28.35 Aligned_cols=30 Identities=10% Similarity=0.506 Sum_probs=24.2
Q ss_pred CCeeEccCCCCCCCCccchHhHHHHHHHHhh
Q 030092 81 SGSVCLDVINQTWSPMFDLVNVFEVFLPQLL 111 (183)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~i~~ll 111 (183)
.+.+|++|+..-|+|.+|+...+.. ++.++
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~l-mkKCv 164 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDL-MKKCV 164 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHH-HHHHH
Confidence 5689999999999999999888744 55444
No 72
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=22.23 E-value=1.2e+02 Score=24.03 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=20.0
Q ss_pred CCEEEEEEEcCCCCCC-----CCCceeEe
Q 030092 46 GGVWRIRVELPDAYPY-----KSPSIGFV 69 (183)
Q Consensus 46 gg~f~~~i~fp~~YP~-----~pP~v~f~ 69 (183)
.|.|.|.-.+|--||. .||.|.|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 4889999999999995 77777665
No 73
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=22.00 E-value=1.8e+02 Score=19.70 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=31.0
Q ss_pred CCCccHHHHHHHHhCHHHHHHHHHHHHHHHcccccccc
Q 030092 117 SDPLNGEAAALLMRDRAAYEQRVKEYREKYAKAEDIEA 154 (183)
Q Consensus 117 ~~p~n~ea~~~~~~~~~~f~~~~r~~~~~~a~~~~~~~ 154 (183)
.+|-+.+|...|..-..+..+..+++.++|+.-.+...
T Consensus 24 THP~d~~Al~~y~~~~~~~~~l~~~Ye~~yGPLt~~~~ 61 (78)
T PF12652_consen 24 THPDDQEALEYYNEYSKQRKQLKKEYEKRYGPLTNFGV 61 (78)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCc
Confidence 36888999999999999999999999999987554433
No 74
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=21.87 E-value=1.1e+02 Score=22.98 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=22.0
Q ss_pred EeecCCcceEEEEEeCCCCCCCC-CCEEEEEEEc
Q 030092 23 EMINDGIQEFYVHFQGPNESPYH-GGVWRIRVEL 55 (183)
Q Consensus 23 ~~~~~~~~~w~~~i~Gp~~tpye-gg~f~~~i~f 55 (183)
.....+...|.|++.|+.|++.. ...|-+.+-|
T Consensus 41 ~WqPGd~~~ytVtV~G~dGs~~~~n~tf~~~FiF 74 (139)
T PF04881_consen 41 TWQPGDPEWYTVTVQGPDGSIRKSNNTFMYKFIF 74 (139)
T ss_pred eccCCCCcceEEEEECCCCcceeccccchheeeH
Confidence 34456778899999999998774 3444444433
No 75
>KOG3214 consensus Uncharacterized Zn ribbon-containing protein [Function unknown]
Probab=21.80 E-value=51 Score=23.69 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=7.7
Q ss_pred CCCccccccCCCCCCcc
Q 030092 159 NSSDEEMSEDEYNSSDD 175 (183)
Q Consensus 159 ~~~~~~~~~~~~~~~~~ 175 (183)
+.+++|..|...++++|
T Consensus 91 ~~nd~e~~s~eee~ded 107 (109)
T KOG3214|consen 91 EENDEEEESEEEEDDED 107 (109)
T ss_pred hhccccccCchhhcccc
Confidence 34444444444444444
No 76
>PF11745 DUF3304: Protein of unknown function (DUF3304); InterPro: IPR021733 This is a family of bacterial proteins of unknown function.
Probab=21.61 E-value=46 Score=24.16 Aligned_cols=21 Identities=19% Similarity=0.506 Sum_probs=16.9
Q ss_pred CCeeEccCCCCCCCCccchHh
Q 030092 81 SGSVCLDVINQTWSPMFDLVN 101 (183)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~ 101 (183)
.|.+|.-.+..+|+|.+++.-
T Consensus 50 Gg~~CC~~~p~~W~pg~tv~V 70 (118)
T PF11745_consen 50 GGFTCCVSLPRKWRPGLTVKV 70 (118)
T ss_pred CceEEEEEcCCCCCCCCEEEE
Confidence 456788889999999988654
No 77
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.11 E-value=1.1e+02 Score=24.37 Aligned_cols=7 Identities=29% Similarity=0.387 Sum_probs=2.7
Q ss_pred CHHHHHH
Q 030092 131 DRAAYEQ 137 (183)
Q Consensus 131 ~~~~f~~ 137 (183)
++..|.+
T Consensus 132 ~RRt~lR 138 (227)
T KOG3241|consen 132 DRRTLLR 138 (227)
T ss_pred HHHHHHH
Confidence 3333433
No 78
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=20.96 E-value=57 Score=30.73 Aligned_cols=17 Identities=12% Similarity=0.048 Sum_probs=10.0
Q ss_pred ccccceeeC-CCCeeEcc
Q 030092 71 KIYHPNIDE-MSGSVCLD 87 (183)
Q Consensus 71 ~i~HPnV~~-~~G~icl~ 87 (183)
|+..-||+. .++.+|++
T Consensus 86 P~~L~Nv~~~~~~v~v~d 103 (622)
T PF02724_consen 86 PWNLDNVFSDNDQVIVFD 103 (622)
T ss_pred CccHhhccCCCCcEEEEE
Confidence 444468885 44556664
No 79
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=20.74 E-value=1.4e+02 Score=25.20 Aligned_cols=30 Identities=27% Similarity=0.547 Sum_probs=26.3
Q ss_pred CCCCCCCEEEEEEEcCCCCCCCC--CceeEec
Q 030092 41 ESPYHGGVWRIRVELPDAYPYKS--PSIGFVN 70 (183)
Q Consensus 41 ~tpyegg~f~~~i~fp~~YP~~p--P~v~f~t 70 (183)
.+.+.|-.|++.|..|.+||-.- |.|.|+-
T Consensus 15 ~s~~~~~~yri~i~~P~~~~~~~~YpVlY~lD 46 (264)
T COG2819 15 KSANTGRKYRIFIATPKNYPKPGGYPVLYMLD 46 (264)
T ss_pred eecCCCcEEEEEecCCCCCCCCCCCcEEEEec
Confidence 35678999999999999999988 9999884
No 80
>PHA03378 EBNA-3B; Provisional
Probab=20.53 E-value=67 Score=30.88 Aligned_cols=8 Identities=25% Similarity=0.277 Sum_probs=3.9
Q ss_pred ccccceee
Q 030092 71 KIYHPNID 78 (183)
Q Consensus 71 ~i~HPnV~ 78 (183)
++||.-+|
T Consensus 251 rRYrlFFD 258 (991)
T PHA03378 251 ERYTLFFD 258 (991)
T ss_pred cchhhhhh
Confidence 34555544
Done!