BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030093
(183 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VYN2|VAP42_ARATH Vesicle-associated protein 4-2 OS=Arabidopsis thaliana GN=PVA42
PE=1 SV=1
Length = 295
Score = 304 bits (778), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 148/180 (82%), Positives = 164/180 (91%)
Query: 4 IFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 63
++F E GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGE++IATVFKFV
Sbjct: 116 LYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGETIIATVFKFV 175
Query: 64 ELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPE 123
E PENNEKPM Q+SR KFKI+S+KVK +DYVPELFDEQKD + EQILRV+FL+PER
Sbjct: 176 EPPENNEKPMDQRSRVKFKIMSLKVKGPMDYVPELFDEQKDDVSKEQILRVIFLDPERSN 235
Query: 124 PALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV 183
PALEKLKRQLA+ADAAV ARKKPPE+TGP++IGEGLVIDEWKERRERYLA+QQ EG DSV
Sbjct: 236 PALEKLKRQLAEADAAVEARKKPPEETGPKMIGEGLVIDEWKERRERYLAQQQGEGADSV 295
>sp|Q1ECE0|VAP41_ARATH Vesicle-associated protein 4-1 OS=Arabidopsis thaliana GN=PVA41
PE=2 SV=1
Length = 266
Score = 284 bits (727), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 138/183 (75%), Positives = 161/183 (87%), Gaps = 1/183 (0%)
Query: 2 SPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 61
S ++F E GKQVRSAIK+KNTSKSH AFKFQTTAPKSC+MRPPG +LAPGES+ ATVFK
Sbjct: 83 SYLYFPYEPGKQVRSAIKLKNTSKSHTAFKFQTTAPKSCYMRPPGGVLAPGESVFATVFK 142
Query: 62 FVELPENNEK-PMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE 120
FVE PENNEK P+ QKS+ KFKI+S+KVK V+YVPELFDEQKDQ A EQ+LRV+F++ +
Sbjct: 143 FVEHPENNEKQPLNQKSKVKFKIMSLKVKPGVEYVPELFDEQKDQVAVEQVLRVIFIDAD 202
Query: 121 RPEPALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGV 180
RP ALEKLKRQL +A+AAV ARKKPP +TGPR++GEGLVIDEWKERRE+YLARQQVE V
Sbjct: 203 RPSAALEKLKRQLDEAEAAVEARKKPPPETGPRVVGEGLVIDEWKERREKYLARQQVESV 262
Query: 181 DSV 183
DS+
Sbjct: 263 DSL 265
>sp|Q8LPQ7|VAP43_ARATH Vesicle-associated protein 4-3 OS=Arabidopsis thaliana GN=PVA43
PE=2 SV=1
Length = 287
Score = 246 bits (628), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 131/180 (72%), Positives = 149/180 (82%), Gaps = 2/180 (1%)
Query: 4 IFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 63
++F E GKQVRSAIKIKNTSKSHVAFKFQTT PKSCFMRP GAILAPGE +IATVFKFV
Sbjct: 108 LYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTVPKSCFMRPAGAILAPGEEIIATVFKFV 167
Query: 64 ELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPE 123
E PENNEKPM QKS KFKI+S+K+K DY+PELF+EQKD + EQ++RVVFL+PE P
Sbjct: 168 EPPENNEKPMEQKSGVKFKIMSLKMKVPTDYMPELFEEQKDHVSEEQVMRVVFLDPENPN 227
Query: 124 PALEKLKRQLADADAAVAARKKPPED-TGPRIIGEGLVIDEWKERRERYLARQQVEGVDS 182
+EKLK QLA+ADAA ARKK E GP+ IGEGLVIDEWK+RRERYLA+QQ GVD+
Sbjct: 228 SMMEKLKSQLAEADAADEARKKASEGIVGPKPIGEGLVIDEWKQRRERYLAQQQ-GGVDA 286
>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21
PE=2 SV=1
Length = 220
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 6 FQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVEL 65
F E KQ +K+ N ++++VAFK +TT+PK F+RP ++ P +S I V L
Sbjct: 19 FLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQPWDSCIIR----VTL 74
Query: 66 PENNEKPMYQKSRDKFKIISMKV--KADVDYVPE-LFDEQKDQTAAEQILRVVFLNPERP 122
E P + +DKF + S V DVD +P+ F + +T E L+V ++ P
Sbjct: 75 QAQREYPPDMQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLTECKLKVSYITPSTT 134
Query: 123 EPALE 127
+ + E
Sbjct: 135 QRSSE 139
>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11
PE=1 SV=1
Length = 256
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Query: 6 FQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVEL 65
F E KQ+ ++ + N + ++VAFK +TT PK +RP ++ P +T V +
Sbjct: 32 FPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVLPR----STCEVLVTM 87
Query: 66 PENNEKPMYQKSRDKFKIISMKVKADV---DYVPELFDEQKDQTAAEQILRVVFLNPERP 122
E P + +DKF + + V + PE+F ++ E LRV ++ P RP
Sbjct: 88 QAQKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETKLRVTYVAPPRP 147
>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22
PE=1 SV=1
Length = 386
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 8/122 (6%)
Query: 6 FQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVEL 65
F + KQ +++ NT+ +VAFK +TT+PK +RP ++AP + TV +
Sbjct: 15 FAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAPKSTCEFTVI----M 70
Query: 66 PENNEKPMYQKSRDKFKIISMKVKA---DVDYVPELFDEQKDQTAAEQILRVVFLNP-ER 121
E P +DKF I S V A D D +F + + + E LRV + P +
Sbjct: 71 QAFKEPPPDMVCKDKFLIQSTAVSAETTDEDITASMFSKAEGKHIEENKLRVTLVPPSDS 130
Query: 122 PE 123
PE
Sbjct: 131 PE 132
>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13
PE=2 SV=1
Length = 239
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 9 EAGKQVRSAIKIKN-TSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPE 67
E KQ ++++ N T+ VAFK +TT P+ +RP ++ PG+S T V +
Sbjct: 19 ELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVVLPGDSCNVT----VTMQA 74
Query: 68 NNEKPMYQKSRDKFKIISMKVKADV---DYVPELFDEQKDQTAAEQILRVVFL--NPERP 122
E P+ + +DKF + ++ V + + E+F+++ + + LRVV++ NP P
Sbjct: 75 QKEAPLDMQCKDKFLVQTVVVSDGTTSKEVLAEMFNKEAGRVIEDFKLRVVYIPANPPSP 134
Query: 123 EP 124
P
Sbjct: 135 VP 136
>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12
PE=1 SV=1
Length = 239
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 6 FQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVEL 65
F E KQ+ ++ + N + ++VAFK +TT PK +RP ++ P S V +
Sbjct: 15 FPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHPRSSSEV----LVTM 70
Query: 66 PENNEKPMYQKSRDKF---KIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERP 122
E P + +DKF +++ D E+F ++ E LRVV++ P RP
Sbjct: 71 QAQKEAPADLQCKDKFLLQCVVASPGATPKDVTHEMFSKEAGHRVEETKLRVVYVAPPRP 130
>sp|P40075|SCS2_YEAST Vesicle-associated membrane protein-associated protein SCS2
OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SCS2 PE=1 SV=3
Length = 244
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 4 IFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 63
+ ++ +Q I N S +AFK +TTAPK +RP A++APGE++ V F+
Sbjct: 11 LVYKSPLTEQSTEYASISNNSDQTIAFKVKTTAPKFYCVRPNAAVVAPGETIQVQVI-FL 69
Query: 64 ELPENNEKPMYQ-KSRDKFKIISMKVKADVD 93
L E+P K RDKF +I++ D++
Sbjct: 70 GL---TEEPAADFKCRDKFLVITLPSPYDLN 97
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14
PE=2 SV=1
Length = 571
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 18/172 (10%)
Query: 4 IFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 63
I F E KQ ++ + N + ++VAFK QTT PK ++P ++ P S V
Sbjct: 14 IRFPIELNKQGSCSLNLTNKTDNYVAFKAQTTKPKMYCVKPSVGVVLPRSSCEV----LV 69
Query: 64 ELPENNEKPMYQKSRDKFKIISMKV----KADVDYVPELFDEQKDQTAAEQILRVVFLNP 119
+ E P ++ +DK + KV D + E+F ++ E I +++++ P
Sbjct: 70 VMQALKEAPADRQCKDKL-LFQCKVVEPGTMDKEVTSEMFSKEAGHRVEETIFKIIYVAP 128
Query: 120 ERPEPALEKLKRQLADADAAVAARKKPPED-TGP--------RIIGEGLVID 162
+P+ +++ + A+V+ + E GP R+ E L+ID
Sbjct: 129 PQPQSPVQEGLEDGSSPSASVSDKGNASEVFVGPSVGIVDLIRMSDELLIID 180
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 9/121 (7%)
Query: 6 FQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVEL 65
F E K+V ++ + N ++++VAFK +TT K ++RP ++ P S V +
Sbjct: 186 FPIELNKKVSCSLNLTNKTENYVAFKAKTTNAKKYYVRPNVGVVLPRSSCEVLVI----M 241
Query: 66 PENNEKPMYQKSRDKF----KIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPER 121
E P + RDK K++ + A D E+F ++ A E L+V+++ P +
Sbjct: 242 QALKEAPADMQCRDKLLFQCKVVEPETTAK-DVTSEMFSKEAGHPAEETRLKVMYVTPPQ 300
Query: 122 P 122
P
Sbjct: 301 P 301
>sp|Q6Q595|SCS22_YEAST Vesicle-associated membrane protein-associated protein SCS22
OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SCS22 PE=1 SV=2
Length = 175
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 IFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 63
+ F+ KQ IK++N + V FK +T+AP +RP AI+ ES+ + F+
Sbjct: 8 LVFKAPLNKQSTEYIKLENDGEKRVIFKVRTSAPTKYCVRPNVAIIGAHESVNVQIV-FL 66
Query: 64 ELPENNEKPMYQKSRDKFKIISMKVKA 90
LP++ + RDKF I+++ + A
Sbjct: 67 GLPKSTADDEMDQKRDKFLIVTLPIPA 93
>sp|A5GFS8|VAPB_PIG Vesicle-associated membrane protein-associated protein B OS=Sus
scrofa GN=VAPB PE=3 SV=1
Length = 243
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 14 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 73
V + +K+ N + +V FK +TTAP+ +RP I+ G S+ +V L + P
Sbjct: 26 VTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASINVSVM----LQPFDYDP- 80
Query: 74 YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVF 116
+KS+ KF + SM AD + + E K + + LR VF
Sbjct: 81 NEKSKHKFMVQSMFAPADTSDMEAAWKEAKPEDLMDSKLRCVF 123
>sp|Q9Z269|VAPB_RAT Vesicle-associated membrane protein-associated protein B OS=Rattus
norvegicus GN=Vapb PE=1 SV=3
Length = 243
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 14 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 73
V + +K+ N + +V FK +TTAP+ +RP ++ G SL +V L + P
Sbjct: 26 VTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGVIDAGASLNVSVM----LQPFDYDP- 80
Query: 74 YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVF 116
+KS+ KF + SM D + ++ E K + + LR VF
Sbjct: 81 NEKSKHKFMVQSMFAPPDTSDMEAVWKEAKPEDLMDSKLRCVF 123
>sp|A2VDZ9|VAPB_BOVIN Vesicle-associated membrane protein-associated protein B OS=Bos
taurus GN=VAPB PE=2 SV=1
Length = 243
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 14 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 73
V + +K+ N + +V FK +TTAP+ +RP I+ G S+ +V L + P
Sbjct: 26 VTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASINVSVM----LQPFDYDP- 80
Query: 74 YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVF 116
+KS+ KF + SM D + ++ E K + + LR VF
Sbjct: 81 NEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLRCVF 123
>sp|O95292|VAPB_HUMAN Vesicle-associated membrane protein-associated protein B/C OS=Homo
sapiens GN=VAPB PE=1 SV=3
Length = 243
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 14 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 73
V + +K+ N + +V FK +TTAP+ +RP I+ G S+ +V L + P
Sbjct: 26 VTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASINVSVM----LQPFDYDP- 80
Query: 74 YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVF 116
+KS+ KF + SM D + ++ E K + + LR VF
Sbjct: 81 NEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLRCVF 123
>sp|Q0VCY1|VAPA_BOVIN Vesicle-associated membrane protein-associated protein A OS=Bos
taurus GN=VAPA PE=2 SV=1
Length = 249
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 14 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 73
V + +K++N S V FK +TTAP+ +RP I+ PG ++ +V L + P
Sbjct: 33 VTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGLTVTVSVM----LQPFDYDP- 87
Query: 74 YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE 120
+KS+ KF + ++ ++ + ++ E K + LR VF P
Sbjct: 88 NEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFEMPN 134
>sp|Q5R601|VAPA_PONAB Vesicle-associated membrane protein-associated protein A OS=Pongo
abelii GN=VAPA PE=2 SV=2
Length = 249
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 14 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 73
V + +K++N S V FK +TTAP+ +RP I+ PG ++ +V L + P
Sbjct: 33 VTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVM----LQPFDYDP- 87
Query: 74 YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE 120
+KS+ KF + ++ + + ++ E K + LR VF P
Sbjct: 88 NEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDELMDSKLRCVFEMPN 134
>sp|Q9P0L0|VAPA_HUMAN Vesicle-associated membrane protein-associated protein A OS=Homo
sapiens GN=VAPA PE=1 SV=3
Length = 249
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 14 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 73
V + +K++N S V FK +TTAP+ +RP I+ PG ++ +V L + P
Sbjct: 33 VTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVM----LQPFDYDP- 87
Query: 74 YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE 120
+KS+ KF + ++ + + ++ E K + LR VF P
Sbjct: 88 NEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDELMDSKLRCVFEMPN 134
>sp|Q9QY76|VAPB_MOUSE Vesicle-associated membrane protein-associated protein B OS=Mus
musculus GN=Vapb PE=2 SV=3
Length = 243
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 14 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 73
V + +K+ N + +V FK +TT P+ +RP ++ G SL +V L + P
Sbjct: 26 VTTNLKLGNPTDRNVCFKVKTTVPRRYCVRPNSGVIDAGASLNVSVM----LQPFDYDP- 80
Query: 74 YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVF 116
+KS+ KF + SM D + ++ E K + + LR VF
Sbjct: 81 NEKSKHKFMVQSMFAPPDTSDMEAVWKEAKPEDLMDSKLRCVF 123
>sp|Q9WV55|VAPA_MOUSE Vesicle-associated membrane protein-associated protein A OS=Mus
musculus GN=Vapa PE=1 SV=2
Length = 249
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 14 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 73
V + +K++N S V FK +TTAP+ +RP I+ PG + +V L + P
Sbjct: 33 VTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVM----LQPFDYDP- 87
Query: 74 YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE 120
+KS+ KF + ++ ++ + ++ E K + LR VF P
Sbjct: 88 NEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFEMPN 134
>sp|Q9Z270|VAPA_RAT Vesicle-associated membrane protein-associated protein A OS=Rattus
norvegicus GN=Vapa PE=1 SV=3
Length = 249
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 14 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 73
V + +K++N S V FK +TTAP+ +RP ++ PG + +V L + P
Sbjct: 33 VTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVM----LQPFDYDP- 87
Query: 74 YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE 120
+KS+ KF + ++ ++ + ++ E K + LR VF P
Sbjct: 88 NEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFEMPN 134
>sp|Q10484|YDFC_SCHPO Uncharacterized protein C17C9.12 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17C9.12 PE=1 SV=2
Length = 319
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 5/117 (4%)
Query: 2 SPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 61
S I F + V+ ++++NT+ + FK +TTAPK +RP G + E+ A +
Sbjct: 7 STIVFPRPLTRLVKCDLELRNTAPYPIGFKVKTTAPKQYCVRPNGGRI---EANSAVSVE 63
Query: 62 FVELPENNEKPMYQKSRDKFKIISMKVKADVDY--VPELFDEQKDQTAAEQILRVVF 116
+ P ++E K RDKF + S ++K ++ + +++ + +E+ +R V+
Sbjct: 64 VILQPLDHEPAPGTKCRDKFLVQSTELKPELQGMDIADIWTQVSKANISERKIRCVY 120
>sp|Q16943|VP33_APLCA Vesicle-associated membrane protein/synaptobrevin-binding protein
OS=Aplysia californica PE=2 SV=1
Length = 260
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 68/157 (43%), Gaps = 24/157 (15%)
Query: 14 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 73
V + +K+ N + + FK +TTAPK +RP IL P S+ V L N P
Sbjct: 26 VTADLKLSNPTDRRICFKVKTTAPKRYCVRPNSGILEPKTSIAVAVM----LQPFNYDP- 80
Query: 74 YQKSRDKFKIISMKVKADVDYVPE----LFDEQKDQTAAEQILRVVFLNPERPEPALEKL 129
+K++ KF + SM D+V E L+ + ++ + LR VF P+ A
Sbjct: 81 NEKNKHKFMVQSMYAP---DHVVESQELLWKDAPPESLMDTKLRCVFEMPDGSHQAPASD 137
Query: 130 KRQLADA----------DAAVAARKKPPEDTGPRIIG 156
+ DA D VA+RK E P+ +G
Sbjct: 138 ASRATDAGAHFSESALEDPTVASRKT--ETQSPKRVG 172
>sp|O82213|VAP31_ARATH Vesicle-associated protein 3-1 OS=Arabidopsis thaliana GN=PVA31
PE=3 SV=1
Length = 149
Score = 37.0 bits (84), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Query: 3 PIFFQD--EAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVF 60
P++ Q E KQ+ ++ + N + ++VAFK +TT + +RP ++ P +T
Sbjct: 11 PMYLQFPFELKKQMSCSLYLTNKTDNNVAFKVKTTNRNNYCVRPNYGLILPK----STCK 66
Query: 61 KFVELPENNEKPMYQKSRDKFKIISMKVKADV---DYVPELFDEQKDQTAAEQILRVVFL 117
V + E P +S +KF I S+ V + E+F ++ E LRV ++
Sbjct: 67 VLVTMQAQKEVPSDMQSFEKFMIQSVLASPGVTAKEVTREMFSKESGHVVEETKLRVTYV 126
>sp|P53022|MSP2_GLORO Major sperm protein 2 OS=Globodera rostochiensis GN=MSP-2 PE=2
SV=2
Length = 126
Score = 36.6 bits (83), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 18 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 55
+++ N + + F F+TT PK M PP +L P ES+
Sbjct: 31 VRVINPGTNRIGFAFKTTKPKRINMNPPNGVLGPKESV 68
>sp|P53023|MSP3_GLORO Major sperm protein 3 OS=Globodera rostochiensis GN=MSP-3 PE=2
SV=2
Length = 126
Score = 36.6 bits (83), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 18 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 55
++I N + F F+TT PK M PP +L P ES+
Sbjct: 31 VRIINPGTKRIGFAFKTTKPKRINMNPPNGVLGPKESV 68
>sp|P53021|MSP1_GLORO Major sperm protein 1 OS=Globodera rostochiensis GN=MSP-1 PE=2
SV=2
Length = 126
Score = 36.6 bits (83), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 18 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 55
++I N + F F+TT PK M PP +L P ES+
Sbjct: 31 VRIINPGTKRIGFAFKTTKPKRINMNPPNGVLGPKESV 68
>sp|Q8NHP6|MSPD2_HUMAN Motile sperm domain-containing protein 2 OS=Homo sapiens GN=MOSPD2
PE=1 SV=1
Length = 518
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 4 IFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 55
++F + ++ I + N +K+ VAFK +TTAP+ ++P + PG S+
Sbjct: 336 LYFGSTESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASV 387
>sp|O60119|YH75_SCHPO Vesicle-associated membrane protein-associated protein C16G5.05c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC16G5.05c PE=1 SV=1
Length = 383
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 11/129 (8%)
Query: 4 IFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 63
+FF + I + N + V FK +TTAPK +RP + P +TV V
Sbjct: 9 LFFYPPFTTMSKELISVHNPNPEPVIFKVKTTAPKHYCVRPNSGKIEPK----STVNVQV 64
Query: 64 ELPENNEKPMYQ-KSRDKFKIISMKV----KADVDYVPELFDEQKDQTAA--EQILRVVF 116
L E+P K RDKF I SM + ++V+ E + E + Q + ++ +R V+
Sbjct: 65 LLQAMKEEPAPDFKCRDKFLIQSMAIGDADTSNVENYHEFWTEMEKQGRSIFDRKIRCVY 124
Query: 117 LNPERPEPA 125
+ P+ A
Sbjct: 125 STKQPPQSA 133
>sp|Q9CWP6|MSPD2_MOUSE Motile sperm domain-containing protein 2 OS=Mus musculus GN=Mospd2
PE=1 SV=2
Length = 518
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 4 IFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 55
++F + ++ I + N +K+ VAFK +TTAP+ ++P + PG S+
Sbjct: 336 LYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASI 387
>sp|Q21244|MSP63_CAEEL Major sperm protein 63 OS=Caenorhabditis elegans GN=msp-63 PE=2
SV=3
Length = 127
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 18 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATV----FKFVELPENNEK 71
IK+ N+S + + +TT K + PP +L P E+++ V F F + NN++
Sbjct: 32 IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQEDTNNDR 89
>sp|Q19832|MSP3_CAEEL Major sperm protein 3 OS=Caenorhabditis elegans GN=msp-3 PE=2
SV=3
Length = 127
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 18 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATV----FKFVELPENNEK 71
IK+ N+S + + +TT K + PP +L P E+++ V F F + NN++
Sbjct: 32 IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQEDTNNDR 89
>sp|P53017|MSP19_CAEEL Major sperm protein 19/31/40/45/50/51/53/59/61/65/81/113/142
OS=Caenorhabditis elegans GN=msp-19 PE=1 SV=2
Length = 127
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 18 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATV----FKFVELPENNEK 71
IK+ N+S + + +TT K + PP +L P E+++ V F F + NN++
Sbjct: 32 IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQEDTNNDR 89
>sp|P05634|MSP10_CAEEL Major sperm protein 10/36/56/76 OS=Caenorhabditis elegans
GN=msp-10 PE=2 SV=4
Length = 127
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 18 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATV----FKFVELPENNEK 71
IK+ N+S + + +TT K + PP +L P E+++ V F F + NN++
Sbjct: 32 IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQEDTNNDR 89
>sp|Q94053|MSP78_CAEEL Major sperm protein 78 OS=Caenorhabditis elegans GN=msp-78 PE=2
SV=3
Length = 127
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 18 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATV----FKFVELPENNEK 71
IK+ N+S + + +TT K + PP +L P E+++ V F F + NN++
Sbjct: 32 IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQEDTNNDR 89
>sp|Q9TVW5|MSP77_CAEEL Major sperm protein 77/79 OS=Caenorhabditis elegans GN=msp-77
PE=2 SV=3
Length = 127
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 18 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATV----FKFVELPENNEK 71
IK+ N+S + + +TT K + PP +L P E+++ V F F + NN++
Sbjct: 32 IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQEDTNNDR 89
>sp|Q23519|MS152_CAEEL Major sperm protein 152 OS=Caenorhabditis elegans GN=msp-152 PE=2
SV=3
Length = 127
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 18 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATV----FKFVELPENNEK 71
IK+ N+S + + +TT K + PP +L P E+++ V F F + NN++
Sbjct: 32 IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQEDTNNDR 89
>sp|Q17856|MSP55_CAEEL Major sperm protein 55/57 OS=Caenorhabditis elegans GN=msp-55
PE=2 SV=3
Length = 127
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 18 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATV----FKFVELPENNEK 71
IK+ N+S + + +TT K + PP +L P E+++ V F F + NN++
Sbjct: 32 IKVINSSARRIVYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQEDTNNDR 89
>sp|P53018|MSP32_CAEEL Major sperm protein 32 OS=Caenorhabditis elegans GN=msp-32 PE=2
SV=1
Length = 190
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 18 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATV----FKFVELPENNEK 71
IK+ N+S + + +TT K + PP +L P E+++ V F F + NN++
Sbjct: 95 IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQEDTNNDR 152
>sp|Q98KJ4|MIAA_RHILO tRNA dimethylallyltransferase OS=Rhizobium loti (strain MAFF303099)
GN=miaA PE=3 SV=1
Length = 321
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 53 ESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQIL 112
E L A+ +E +P+ + +F +I A VD + FD+ D+ A E++
Sbjct: 179 EVLDASGRSILEWQAERGRPLIDRQTARFLVIEPDRAALVDRIERRFDQMLDKGALEEVR 238
Query: 113 RVVFLNPERPEPALEKLKRQLADADAAVAARKKPPE 148
++ L + PA++ + + D AA+A + PE
Sbjct: 239 QLAALGLDPDLPAMKAIG--VRDLQAAMAGQLSFPE 272
>sp|B4SIF5|DPO4_STRM5 DNA polymerase IV OS=Stenotrophomonas maltophilia (strain R551-3)
GN=dinB PE=3 SV=1
Length = 356
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 103 KDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGL 159
K +TA +IL F PERP ++E+L+ D A+ AR P DT R++G GL
Sbjct: 288 KLKTAQFRILTRSF-TPERPPESMEELR----DIALALRARVDLPADTRYRLVGVGL 339
>sp|P25648|SRB8_YEAST Mediator of RNA polymerase II transcription subunit 12
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SRB8 PE=1 SV=2
Length = 1427
Score = 30.4 bits (67), Expect = 7.2, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 58 TVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVV 115
T F ++ ENNE M + F +++ D ++FD+ KD E I ++V
Sbjct: 1093 TCFCIKKIMENNEPAMAMEDLKNFIFQIIEITNSNDLCSQIFDQLKDMQTIEMITQIV 1150
>sp|O04647|PP399_ARATH Pentatricopeptide repeat-containing protein At5g27270
OS=Arabidopsis thaliana GN=EMB976 PE=2 SV=2
Length = 1038
Score = 30.4 bits (67), Expect = 7.3, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 118 NPERPEPALEKLKRQLADADAAVAARKK 145
NPE+P+P E+ K L+D DA +KK
Sbjct: 50 NPEKPKPRYERPKHPLSDDDARRIIKKK 77
>sp|O13750|SUCA_SCHPO Probable succinyl-CoA ligase [ADP-forming] subunit alpha,
mitochondrial OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPAC16E8.17c PE=3 SV=1
Length = 331
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 7 QDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVE 64
+++A + +R+A ++T K V+F TAPK M GAI+A G+ A F+ +E
Sbjct: 248 EEDAAEFIRAANASRSTPKPVVSFIAGATAPKGRRMGHAGAIVAGGKGTAAAKFEALE 305
>sp|Q60Y65|HPPD_CAEBR 4-hydroxyphenylpyruvate dioxygenase OS=Caenorhabditis briggsae
GN=hpd-1 PE=3 SV=1
Length = 393
Score = 30.0 bits (66), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 18/92 (19%)
Query: 48 ILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPEL-----FDEQ 102
I+ E+L A +F+ +P + Y R + + SMK+K D+D + +L FDE
Sbjct: 275 IITAIEALRARGCEFLSIPSS----YYDNLRQRLSVSSMKIKEDMDRLQKLHILVDFDEN 330
Query: 103 KDQTAAEQILRVVFLNP--ERPEPALEKLKRQ 132
L +F P +RP LE ++RQ
Sbjct: 331 G-------YLLQIFSKPCQDRPTLFLEIIQRQ 355
>sp|Q24K12|GPTC1_BOVIN G patch domain-containing protein 1 OS=Bos taurus GN=GPATCH1 PE=2
SV=1
Length = 931
Score = 30.0 bits (66), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 58 TVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFL 117
+VF F+ +PE P+ Q S +K ++ +D P +D K++ + I + L
Sbjct: 646 SVFNFLTIPETASSPVTQASSEK---VAQHRASDKSRKPSRWDTSKEEKKEDSISEFLSL 702
Query: 118 -----NPERPEPA 125
P +PEP+
Sbjct: 703 ARSKVGPAKPEPS 715
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,741,287
Number of Sequences: 539616
Number of extensions: 2871072
Number of successful extensions: 8829
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 8773
Number of HSP's gapped (non-prelim): 79
length of query: 183
length of database: 191,569,459
effective HSP length: 110
effective length of query: 73
effective length of database: 132,211,699
effective search space: 9651454027
effective search space used: 9651454027
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)