Query 030093
Match_columns 183
No_of_seqs 146 out of 580
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 08:24:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030093.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030093hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0439 VAMP-associated protei 100.0 3.8E-30 8.3E-35 213.0 14.0 177 2-182 15-218 (218)
2 COG5066 SCS2 VAMP-associated p 100.0 2.2E-28 4.8E-33 203.0 10.9 114 2-118 7-122 (242)
3 PF00635 Motile_Sperm: MSP (Ma 99.9 3.7E-22 8E-27 147.5 12.0 97 2-103 8-108 (109)
4 PF14874 PapD-like: Flagellar- 98.1 2.4E-05 5.3E-10 57.1 8.8 59 3-61 10-71 (102)
5 PF00345 PapD_N: Pili and flag 95.4 0.19 4.1E-06 37.7 9.1 49 13-61 15-72 (122)
6 PF14646 MYCBPAP: MYCBP-associ 94.9 0.76 1.6E-05 42.1 13.3 115 3-138 238-365 (426)
7 PF07610 DUF1573: Protein of u 92.6 0.53 1.2E-05 29.9 5.6 43 18-61 2-45 (45)
8 PF11614 FixG_C: IG-like fold 91.3 0.71 1.5E-05 34.5 5.9 50 13-62 32-83 (118)
9 PRK09918 putative fimbrial cha 87.5 14 0.0003 31.2 11.6 96 12-121 38-138 (230)
10 PF06280 DUF1034: Fn3-like dom 86.4 2.1 4.6E-05 31.7 5.4 51 11-61 7-78 (112)
11 smart00809 Alpha_adaptinC2 Ada 84.7 6.3 0.00014 28.3 7.2 51 11-61 17-71 (104)
12 PRK11385 putativi pili assembl 83.9 19 0.00042 30.7 10.8 98 12-121 40-149 (236)
13 PF10633 NPCBM_assoc: NPCBM-as 83.5 2.3 5.1E-05 29.4 4.3 53 9-61 2-58 (78)
14 PF02883 Alpha_adaptinC2: Adap 83.0 4.4 9.6E-05 29.8 5.8 52 10-61 22-77 (115)
15 PF03173 CHB_HEX: Putative car 82.6 2.6 5.6E-05 34.2 4.7 50 12-61 30-102 (164)
16 PRK15299 fimbrial chaperone pr 82.2 26 0.00056 29.5 10.8 101 7-120 32-141 (227)
17 TIGR03079 CH4_NH3mon_ox_B meth 82.0 4.4 9.5E-05 37.2 6.4 54 9-62 279-353 (399)
18 PRK09926 putative chaperone pr 79.6 31 0.00068 29.4 10.6 102 12-121 39-151 (246)
19 PF06030 DUF916: Bacterial pro 79.1 19 0.00041 27.5 8.3 58 4-61 19-101 (121)
20 PRK15211 fimbrial chaperone pr 78.5 37 0.00081 28.8 10.6 97 12-120 36-139 (229)
21 PRK15192 fimbrial chaperone Bc 78.3 42 0.00091 28.7 11.9 95 12-121 36-144 (234)
22 PF00927 Transglut_C: Transglu 78.2 9 0.0002 27.9 6.1 52 10-61 13-74 (107)
23 PF05506 DUF756: Domain of unk 75.5 11 0.00024 26.7 5.8 44 15-61 21-65 (89)
24 PF02753 PapD_C: Pili assembly 75.2 3.6 7.8E-05 27.7 3.0 44 18-61 1-45 (68)
25 PRK15295 fimbrial assembly cha 73.8 54 0.0012 27.7 10.7 94 13-120 34-137 (226)
26 PRK15249 fimbrial chaperone pr 73.4 29 0.00064 29.7 8.8 100 13-121 43-154 (253)
27 PF12690 BsuPI: Intracellular 73.4 17 0.00038 25.9 6.3 21 14-34 2-22 (82)
28 PRK15233 putative fimbrial cha 73.0 30 0.00066 29.8 8.8 76 6-91 49-131 (246)
29 PF11611 DUF4352: Domain of un 68.0 32 0.00069 24.9 7.0 53 10-62 34-100 (123)
30 PRK15246 fimbrial assembly cha 67.4 78 0.0017 26.9 12.3 101 12-121 24-135 (233)
31 PF04744 Monooxygenase_B: Mono 66.0 20 0.00044 32.9 6.4 53 9-62 260-334 (381)
32 PRK15224 pili assembly chapero 65.8 39 0.00084 29.0 7.9 71 12-91 42-119 (237)
33 PF00553 CBM_2: Cellulose bind 61.5 23 0.0005 25.8 5.0 50 12-61 13-82 (101)
34 PRK15188 fimbrial chaperone pr 60.3 1.1E+02 0.0023 26.1 11.0 100 12-122 41-147 (228)
35 PRK15285 putative fimbrial cha 59.9 69 0.0015 27.6 8.4 74 12-90 39-119 (250)
36 PRK15218 fimbrial chaperone pr 58.4 1.1E+02 0.0025 25.8 12.0 96 12-120 32-140 (226)
37 PRK15274 putative periplasmic 57.1 80 0.0017 27.4 8.4 75 12-91 40-121 (257)
38 PF05753 TRAP_beta: Translocon 55.7 63 0.0014 26.5 7.2 51 10-61 36-95 (181)
39 smart00637 CBD_II CBD_II domai 55.1 53 0.0012 23.2 6.0 48 14-61 8-75 (92)
40 PF07705 CARDB: CARDB; InterP 54.2 41 0.0009 23.1 5.2 52 10-61 17-69 (101)
41 PRK15249 fimbrial chaperone pr 53.0 28 0.00061 29.9 4.9 56 3-59 163-219 (253)
42 PRK15290 lfpB fimbrial chapero 50.9 1.1E+02 0.0024 26.2 8.2 99 12-120 51-157 (243)
43 PRK15254 fimbrial chaperone pr 49.9 1.6E+02 0.0036 25.1 10.4 98 12-120 30-134 (239)
44 PF08277 PAN_3: PAN-like domai 49.7 24 0.00053 23.4 3.3 19 14-32 53-71 (71)
45 COG3121 FimC P pilus assembly 47.7 1.7E+02 0.0037 24.7 12.1 100 13-123 42-149 (235)
46 PRK15195 fimbrial chaperone pr 45.5 1.9E+02 0.004 24.5 12.2 103 6-121 34-145 (229)
47 PF14796 AP3B1_C: Clathrin-ada 43.9 87 0.0019 25.0 6.0 51 11-61 84-138 (145)
48 PF11538 Snurportin1: Snurport 43.2 18 0.00039 22.9 1.6 14 163-176 15-28 (40)
49 PRK15246 fimbrial assembly cha 43.2 56 0.0012 27.8 5.2 49 2-59 144-192 (233)
50 PRK15208 long polar fimbrial c 42.4 2.1E+02 0.0045 24.1 11.3 98 13-120 36-139 (228)
51 PF03168 LEA_2: Late embryogen 42.3 1.1E+02 0.0024 21.0 6.0 45 17-61 1-51 (101)
52 PRK15295 fimbrial assembly cha 41.2 63 0.0014 27.2 5.2 40 17-60 158-198 (226)
53 PRK15192 fimbrial chaperone Bc 40.9 65 0.0014 27.5 5.2 38 18-59 164-202 (234)
54 PRK09926 putative chaperone pr 39.5 81 0.0018 26.9 5.6 54 3-59 161-216 (246)
55 TIGR02745 ccoG_rdxA_fixG cytoc 38.6 3E+02 0.0065 25.7 9.6 55 7-61 340-397 (434)
56 smart00605 CW CW domain. 37.1 64 0.0014 23.0 4.0 15 24-38 66-80 (94)
57 PF07233 DUF1425: Protein of u 36.6 1.6E+02 0.0035 21.2 6.3 51 11-61 23-80 (94)
58 COG3121 FimC P pilus assembly 35.6 79 0.0017 26.8 4.9 42 16-59 165-208 (235)
59 PF11616 EZH2_WD-Binding: WD r 35.3 15 0.00032 21.9 0.3 10 160-169 18-27 (30)
60 PRK15224 pili assembly chapero 35.2 88 0.0019 26.8 5.2 48 2-58 160-208 (237)
61 PRK15308 putative fimbrial pro 34.4 3E+02 0.0064 23.6 10.0 74 11-94 30-121 (234)
62 PHA01327 hypothetical protein 33.4 36 0.00077 22.0 1.8 14 162-175 20-33 (49)
63 PRK11385 putativi pili assembl 32.9 1.1E+02 0.0023 26.2 5.3 49 2-59 158-207 (236)
64 PRK15253 putative fimbrial ass 32.5 3.2E+02 0.0069 23.4 11.9 95 13-120 48-155 (242)
65 PF13205 Big_5: Bacterial Ig-l 32.4 1.8E+02 0.0038 20.3 6.1 55 4-61 27-84 (107)
66 PF06483 ChiC: Chitinase C; I 31.8 57 0.0012 27.1 3.3 26 26-62 116-141 (180)
67 PRK15188 fimbrial chaperone pr 30.9 1.1E+02 0.0024 25.9 5.1 47 2-57 155-201 (228)
68 PRK15290 lfpB fimbrial chapero 30.0 1.2E+02 0.0027 25.9 5.2 38 17-59 177-215 (243)
69 PRK15218 fimbrial chaperone pr 29.9 1.3E+02 0.0029 25.4 5.3 50 2-59 150-199 (226)
70 PF13473 Cupredoxin_1: Cupredo 29.8 2E+02 0.0043 20.6 5.7 37 17-61 46-82 (104)
71 PRK15253 putative fimbrial ass 29.7 1.3E+02 0.0027 25.8 5.2 49 2-58 165-214 (242)
72 cd04094 selB_III This family r 29.3 2.1E+02 0.0046 20.3 6.3 51 26-85 34-85 (97)
73 PRK15208 long polar fimbrial c 28.1 1.5E+02 0.0032 25.0 5.3 39 17-59 159-198 (228)
74 COG3354 FlaG Putative archaeal 27.5 1.7E+02 0.0037 23.7 5.2 48 13-61 69-128 (154)
75 PF09640 DUF2027: Domain of un 26.8 90 0.002 25.5 3.6 69 13-92 17-85 (162)
76 PRK15299 fimbrial chaperone pr 26.8 1.4E+02 0.0031 25.0 5.0 39 17-59 161-200 (227)
77 PF06159 DUF974: Protein of un 26.4 2.2E+02 0.0049 24.2 6.2 51 11-61 13-75 (249)
78 PRK15211 fimbrial chaperone pr 26.0 1.6E+02 0.0034 25.0 5.2 51 2-58 149-204 (229)
79 KOG1769 Ubiquitin-like protein 25.4 89 0.0019 23.5 3.1 26 14-39 19-44 (99)
80 PRK09918 putative fimbrial cha 24.9 1.7E+02 0.0037 24.6 5.2 42 17-60 156-200 (230)
81 PF11906 DUF3426: Protein of u 24.5 2.1E+02 0.0046 21.7 5.3 51 11-61 67-134 (149)
82 PRK15274 putative periplasmic 23.4 2E+02 0.0044 24.9 5.4 41 17-59 167-209 (257)
83 smart00769 WHy Water Stress an 20.9 3.2E+02 0.0069 19.4 7.1 50 12-61 15-70 (100)
84 PF09478 CBM49: Carbohydrate b 20.4 3E+02 0.0065 19.0 5.4 21 14-34 19-40 (80)
85 PRK15254 fimbrial chaperone pr 20.2 2.3E+02 0.0049 24.2 5.0 42 17-60 155-199 (239)
No 1
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.8e-30 Score=213.02 Aligned_cols=177 Identities=34% Similarity=0.467 Sum_probs=154.8
Q ss_pred CceEEeCCCCCeEEEEEEEEcCCCCeEEEEEeeCCccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceE
Q 030093 2 SPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKF 81 (183)
Q Consensus 2 ~eL~F~~~~~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKF 81 (183)
.+|+|++++.+++++.|+|+|+++.++|||||||+|++|||||+.|+|.||+++.|.|.+ +|. ...|.+++|+|||
T Consensus 15 ~~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~---q~~-~~~P~d~~~r~kF 90 (218)
T KOG0439|consen 15 DELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTH---QPF-EKSPPDFKSRHKF 90 (218)
T ss_pred ceEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEe---ccC-ccCchhhcccceE
Confidence 479999999999999999999999999999999999999999999999999999999998 773 3457888899999
Q ss_pred EEEEEEeCCC-CCChhhhhhccC--CCcceEEEeEEEEeCCCCCCchHHHH---HHhHhHHHHHHHhhCCCCCCC---CC
Q 030093 82 KIISMKVKAD-VDYVPELFDEQK--DQTAAEQILRVVFLNPERPEPALEKL---KRQLADADAAVAARKKPPEDT---GP 152 (183)
Q Consensus 82 lIqs~~v~~~-~d~~~elwk~~~--~~~i~e~KLrV~f~~p~~ps~~~e~~---~~~l~~a~~~~~~~~~~~~~~---~~ 152 (183)
+||++.++.+ .....++|+..+ +..+.+.+++|.|+.|..+....+.. .+..+..++...+........ .+
T Consensus 91 ~v~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (218)
T KOG0439|consen 91 LIQSLKAPPPTTRDVVDLWKFQKETPKESFETKLRVVFVAPTETDSVVAKLQKAKKKEAEKEAFGEATKEASDGEVCVKS 170 (218)
T ss_pred EEEEEecCCccccchhhhccccccccccccceeeEEEeeCCCCCcccccccccccccCCccccccccccccCcccccchh
Confidence 9999999986 567899999988 78889999999999988776666655 667777777788877777543 57
Q ss_pred ceeccceeechh------------------hHhHHHHHHHhhhcccCC
Q 030093 153 RIIGEGLVIDEW------------------KERRERYLARQQVEGVDS 182 (183)
Q Consensus 153 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~ 182 (183)
...++++++++| +++++++++.+|.+...|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (218)
T KOG0439|consen 171 KEFGEKLELKEELKAFKLKANKVDEERLLKKKKEGRLLAELQAELVIS 218 (218)
T ss_pred hhhhccccchhhhhccccccccccccchhhhhhhHHHHHhhhhhhccC
Confidence 789999999999 899999999999876543
No 2
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]
Probab=99.95 E-value=2.2e-28 Score=202.98 Aligned_cols=114 Identities=22% Similarity=0.291 Sum_probs=107.0
Q ss_pred CceEEeCCCCCeEEEEEEEEcCCCCeEEEEEeeCCccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceE
Q 030093 2 SPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKF 81 (183)
Q Consensus 2 ~eL~F~~~~~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKF 81 (183)
.++.|+.|+....++.+.|.|++..+|+||||||+|+.||||||.|+|.|++++.|.|+| +++.+++.++.+|+|||
T Consensus 7 p~~~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVil---q~l~eEpapdfKCrdKF 83 (242)
T COG5066 7 PQTTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVIL---QGLTEEPAPDFKCRDKF 83 (242)
T ss_pred CceEEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEe---eccccCCCCCcccccee
Confidence 368899999999999999999999999999999999999999999999999999999999 89999998999999999
Q ss_pred EEEEEEeCCCC--CChhhhhhccCCCcceEEEeEEEEeC
Q 030093 82 KIISMKVKADV--DYVPELFDEQKDQTAAEQILRVVFLN 118 (183)
Q Consensus 82 lIqs~~v~~~~--d~~~elwk~~~~~~i~e~KLrV~f~~ 118 (183)
|||++..+.+. .+..++|+...+.-|.++||+|+|..
T Consensus 84 Liqs~~~~~~l~g~d~ad~wt~~sk~~i~~rkIrcvyse 122 (242)
T COG5066 84 LIQSYRFDWRLSGSDFADHWTSSSKKPIWTRKIRCVYSE 122 (242)
T ss_pred EEEEeccChhhccchHHHHHHhhccccchhhheeEEeec
Confidence 99999998754 45799999999888999999999984
No 3
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=99.88 E-value=3.7e-22 Score=147.51 Aligned_cols=97 Identities=31% Similarity=0.459 Sum_probs=77.5
Q ss_pred CceEEeCCCCCeEEEEEEEEcCCCCeEEEEEeeCCccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceE
Q 030093 2 SPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKF 81 (183)
Q Consensus 2 ~eL~F~~~~~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKF 81 (183)
+.|.|..++++..++.|+|+|+|+.+||||||||+|.+|+|+|+.|+|.||+++.|.|++ ++...... ...+|||
T Consensus 8 ~~i~F~~~~~~~~~~~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I~~---~~~~~~~~--~~~~dkf 82 (109)
T PF00635_consen 8 ELIFFNAPFNKQQSCELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITITF---QPFDFEPS--NKKKDKF 82 (109)
T ss_dssp SEEEEESSTSS-EEEEEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEEEE----SSSTTTT--STSSEEE
T ss_pred cceEEcCCCCceEEEEEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEEEE---EecccCCC--CCCCCEE
Confidence 478999999999999999999999999999999999999999999999999999999999 67544321 2239999
Q ss_pred EEEEEEeCCCCC----ChhhhhhccC
Q 030093 82 KIISMKVKADVD----YVPELFDEQK 103 (183)
Q Consensus 82 lIqs~~v~~~~d----~~~elwk~~~ 103 (183)
+|+++.++++.. .+..+|++.+
T Consensus 83 ~I~~~~~~~~~~~~~~~~~~~~~~~~ 108 (109)
T PF00635_consen 83 LIQSIVVPDNATDPKKDFKQIWKNGK 108 (109)
T ss_dssp EEEEEEE-TT-SSSHHHHHCCHHHSS
T ss_pred EEEEEEcCCCccchhhhHHHHHhccC
Confidence 999999987763 3567777654
No 4
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=98.12 E-value=2.4e-05 Score=57.05 Aligned_cols=59 Identities=25% Similarity=0.382 Sum_probs=50.1
Q ss_pred ceEEeC-CCCCeEEEEEEEEcCCCCeEEEEEeeCC--ccceeecCCceeeCCCCeEEEEEEe
Q 030093 3 PIFFQD-EAGKQVRSAIKIKNTSKSHVAFKFQTTA--PKSCFMRPPGAILAPGESLIATVFK 61 (183)
Q Consensus 3 eL~F~~-~~~k~~~~~LtL~N~s~~~VAFKVKTTa--P~~Y~VrP~~GiI~Pg~s~~I~V~l 61 (183)
+|.|-. ..+...+..|+|+|.|..+..|+|+... ...|.|.|..|.|+||++..+.|++
T Consensus 10 ~ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~ 71 (102)
T PF14874_consen 10 ELDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTF 71 (102)
T ss_pred EEEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEE
Confidence 445543 3578899999999999999999997533 5679999999999999999999998
No 5
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=95.40 E-value=0.19 Score=37.72 Aligned_cols=49 Identities=24% Similarity=0.350 Sum_probs=41.6
Q ss_pred eEEEEEEEEcCCCCeEEEEEeeCC----c-----cceeecCCceeeCCCCeEEEEEEe
Q 030093 13 QVRSAIKIKNTSKSHVAFKFQTTA----P-----KSCFMRPPGAILAPGESLIATVFK 61 (183)
Q Consensus 13 ~~~~~LtL~N~s~~~VAFKVKTTa----P-----~~Y~VrP~~GiI~Pg~s~~I~V~l 61 (183)
+....++|+|.++.++.+.+.... + ..|.|-|+.-.|+||++..|.|..
T Consensus 15 ~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv~~ 72 (122)
T PF00345_consen 15 QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRVYR 72 (122)
T ss_dssp SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEEEE
T ss_pred CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEEEe
Confidence 347899999999999999987543 1 268999999999999999999943
No 6
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=94.93 E-value=0.76 Score=42.11 Aligned_cols=115 Identities=14% Similarity=0.280 Sum_probs=78.9
Q ss_pred ceEEeCCCCCeEEEEEE-EEcCCCCeEEEEEeeC------------CccceeecCCceeeCCCCeEEEEEEeeccCCCCC
Q 030093 3 PIFFQDEAGKQVRSAIK-IKNTSKSHVAFKFQTT------------APKSCFMRPPGAILAPGESLIATVFKFVELPENN 69 (183)
Q Consensus 3 eL~F~~~~~k~~~~~Lt-L~N~s~~~VAFKVKTT------------aP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~ 69 (183)
.|.|.-.++......|. |.|.+...|-|.=+-- ....|......|+|-||++..+.|++ +|...
T Consensus 238 ~l~Fe~~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F---~s~~~ 314 (426)
T PF14646_consen 238 RLTFECHPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMF---KSRKV 314 (426)
T ss_pred EEEEEcccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEE---eCCCc
Confidence 47899999988888888 9999999999985422 24568899999999999999999998 56421
Q ss_pred CCCCCCCCCceEEEEEEEeCCCCCChhhhhhccCCCcceEEEeEEEEeCCCCCCchHHHHHHhHhHHHH
Q 030093 70 EKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADA 138 (183)
Q Consensus 70 e~p~~~~~kDKFlIqs~~v~~~~d~~~elwk~~~~~~i~e~KLrV~f~~p~~ps~~~e~~~~~l~~a~~ 138 (183)
.-.++...+..-+. +|- .....-+|+.+-+++..-....+.+++.|+.-.+
T Consensus 315 -----Gif~E~W~L~t~P~---------l~~----~~~l~v~L~G~~~~~~~~~~~~~~~~~~l~~k~~ 365 (426)
T PF14646_consen 315 -----GIFKERWELRTFPP---------LFG----GASLTVRLHGVCTPPDEYLDKRKMLEEELARKEA 365 (426)
T ss_pred -----eEEEEEEEEEEecc---------ccC----CCceEEEEEEEEcCchHhHHHHHHHHHHHHHHHH
Confidence 23456666655332 222 1124567777766664444455666665554443
No 7
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=92.60 E-value=0.53 Score=29.87 Aligned_cols=43 Identities=26% Similarity=0.164 Sum_probs=34.4
Q ss_pred EEEEcCCCCeE-EEEEeeCCccceeecCCceeeCCCCeEEEEEEe
Q 030093 18 IKIKNTSKSHV-AFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 61 (183)
Q Consensus 18 LtL~N~s~~~V-AFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l 61 (183)
++|+|.++.++ -.+|+|+ =+=..+..+...|.||++..|.|++
T Consensus 2 F~~~N~g~~~L~I~~v~ts-CgCt~~~~~~~~i~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQTS-CGCTTAEYSKKPIAPGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEeeEc-cCCEEeeCCcceECCCCEEEEEEEC
Confidence 68999998776 6777754 5566777888899999999999873
No 8
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=91.25 E-value=0.71 Score=34.51 Aligned_cols=50 Identities=16% Similarity=0.306 Sum_probs=35.2
Q ss_pred eEEEEEEEEcCCCCeEEEEEeeCCccceee-cCCce-eeCCCCeEEEEEEee
Q 030093 13 QVRSAIKIKNTSKSHVAFKFQTTAPKSCFM-RPPGA-ILAPGESLIATVFKF 62 (183)
Q Consensus 13 ~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~V-rP~~G-iI~Pg~s~~I~V~l~ 62 (183)
+..-.|+|.|.+..+..|.|+...+..+.+ .|... .|+||++..+.|.+.
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~ 83 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVT 83 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEE
Confidence 456789999999999999999887778888 66555 499999999888873
No 9
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=87.50 E-value=14 Score=31.19 Aligned_cols=96 Identities=18% Similarity=0.177 Sum_probs=61.7
Q ss_pred CeEEEEEEEEcCCCCeEEEEEeeCCc-----cceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEEEEEE
Q 030093 12 KQVRSAIKIKNTSKSHVAFKFQTTAP-----KSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISM 86 (183)
Q Consensus 12 k~~~~~LtL~N~s~~~VAFKVKTTaP-----~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKFlIqs~ 86 (183)
+....+++|+|.++.++......... .-|.|-|+.-.|+||++..|.|.+ .. ..|.+. ---|.+...
T Consensus 38 ~~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRii~---~~---~lp~dr--Es~f~l~v~ 109 (230)
T PRK09918 38 SDGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRFIL---KS---GSPLNT--EHLLRVSFE 109 (230)
T ss_pred CCCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEEEE---CC---CCCCCe--eEEEEEEEE
Confidence 45678999999998877666543211 249999999999999999999987 21 123332 234777777
Q ss_pred EeCCCCCChhhhhhccCCCcceEEEeEEEEeCCCC
Q 030093 87 KVKADVDYVPELFDEQKDQTAAEQILRVVFLNPER 121 (183)
Q Consensus 87 ~v~~~~d~~~elwk~~~~~~i~e~KLrV~f~~p~~ 121 (183)
.+++..+. +..=+.....++++-|-|..-
T Consensus 110 ~IP~~~~~------~~~l~ia~r~~iklfyRP~~l 138 (230)
T PRK09918 110 GVPPKPGG------KNKVVMPIRQDLPVLIQPAAL 138 (230)
T ss_pred EcCCCCCC------CCEEEEEEEeEEEEEEeCCCC
Confidence 77753321 111122335677777766543
No 10
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=86.38 E-value=2.1 Score=31.67 Aligned_cols=51 Identities=18% Similarity=0.284 Sum_probs=32.5
Q ss_pred CCeEEEEEEEEcCCCCeEEEEEeeC-----C---ccceee--c-----------CCceeeCCCCeEEEEEEe
Q 030093 11 GKQVRSAIKIKNTSKSHVAFKFQTT-----A---PKSCFM--R-----------PPGAILAPGESLIATVFK 61 (183)
Q Consensus 11 ~k~~~~~LtL~N~s~~~VAFKVKTT-----a---P~~Y~V--r-----------P~~GiI~Pg~s~~I~V~l 61 (183)
+...+..|+|+|.++..+-|++.-. . .+.|.. . |..=.|+||++..|.|++
T Consensus 7 ~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti 78 (112)
T PF06280_consen 7 GNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTI 78 (112)
T ss_dssp -SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEE
T ss_pred CCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEE
Confidence 4557889999999999999997643 1 122221 1 222358999999999998
No 11
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=84.73 E-value=6.3 Score=28.28 Aligned_cols=51 Identities=29% Similarity=0.518 Sum_probs=39.6
Q ss_pred CCeEEEEEEEEcCCCCeE-EEEEeeCCccceeec--CCce-eeCCCCeEEEEEEe
Q 030093 11 GKQVRSAIKIKNTSKSHV-AFKFQTTAPKSCFMR--PPGA-ILAPGESLIATVFK 61 (183)
Q Consensus 11 ~k~~~~~LtL~N~s~~~V-AFKVKTTaP~~Y~Vr--P~~G-iI~Pg~s~~I~V~l 61 (183)
+....-.+...|.+..++ -|.++-..|+.+.++ |..| .|+||+.+.-.+.+
T Consensus 17 ~~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l~~~s~~~l~p~~~i~q~~~i 71 (104)
T smart00809 17 PGLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQLQPPSSPTLPPGGQITQVLKV 71 (104)
T ss_pred CCeEEEEEEEEeCCCCeeeeEEEEEEcccceEEEEcCCCCCccCCCCCEEEEEEE
Confidence 457888999999998777 488888888887765 5554 89999886666665
No 12
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=83.92 E-value=19 Score=30.67 Aligned_cols=98 Identities=15% Similarity=0.228 Sum_probs=60.5
Q ss_pred CeEEEEEEEEcCCCCeEEEEEeeC------------CccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCc
Q 030093 12 KQVRSAIKIKNTSKSHVAFKFQTT------------APKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRD 79 (183)
Q Consensus 12 k~~~~~LtL~N~s~~~VAFKVKTT------------aP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kD 79 (183)
.....+++|.|.++.++.=-.... ...-|.|-|+.--|+||+...+.|.. ... ...|.|. -.
T Consensus 40 ~~~~~sv~l~N~~~~p~LvQswv~~~~~~~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~---~~~-~~LP~DR--ES 113 (236)
T PRK11385 40 DRESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLR---TES-DILPVDR--ET 113 (236)
T ss_pred CCceEEEEEEeCCCCcEEEEEEcccCccccCcccccccCCEEEcCCeEEECCCCceEEEEEE---CCC-CCCCCCc--eE
Confidence 446788999999988744333211 11249999999999999999999997 221 1124432 24
Q ss_pred eEEEEEEEeCCCCCChhhhhhccCCCcceEEEeEEEEeCCCC
Q 030093 80 KFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPER 121 (183)
Q Consensus 80 KFlIqs~~v~~~~d~~~elwk~~~~~~i~e~KLrV~f~~p~~ 121 (183)
-|.+....+++..+. ...=......+|++-|-|..-
T Consensus 114 lf~lnv~~IPp~~~~------~n~L~iair~riKLFyRP~~L 149 (236)
T PRK11385 114 LFELSIASVPSGKVE------NQSVKVAMRSVFKLFWRPEGL 149 (236)
T ss_pred EEEEEEEecCCCcCC------CceEEEEEEeeEEEEEccccc
Confidence 566766777763221 101123347778887766543
No 13
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=83.51 E-value=2.3 Score=29.41 Aligned_cols=53 Identities=23% Similarity=0.395 Sum_probs=32.5
Q ss_pred CCCCeEEEEEEEEcCCCCeE-EEEEeeCCcccee--ecCCce-eeCCCCeEEEEEEe
Q 030093 9 EAGKQVRSAIKIKNTSKSHV-AFKFQTTAPKSCF--MRPPGA-ILAPGESLIATVFK 61 (183)
Q Consensus 9 ~~~k~~~~~LtL~N~s~~~V-AFKVKTTaP~~Y~--VrP~~G-iI~Pg~s~~I~V~l 61 (183)
.+|...+-.++++|.++.++ ..++.-..|.-+. ..|... -|.||++..+.+.+
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V 58 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTV 58 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEE
Confidence 35778899999999986543 3445445688877 455443 69999999999887
No 14
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=82.98 E-value=4.4 Score=29.77 Aligned_cols=52 Identities=27% Similarity=0.509 Sum_probs=36.8
Q ss_pred CCCeEEEEEEEEcCCCCeEE-EEEeeCCccceee--cCC-ceeeCCCCeEEEEEEe
Q 030093 10 AGKQVRSAIKIKNTSKSHVA-FKFQTTAPKSCFM--RPP-GAILAPGESLIATVFK 61 (183)
Q Consensus 10 ~~k~~~~~LtL~N~s~~~VA-FKVKTTaP~~Y~V--rP~-~GiI~Pg~s~~I~V~l 61 (183)
.+...+-.++..|.+..++- |.++-..|+.|.+ .|. ...|+|+..+.-.+.+
T Consensus 22 ~~~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~l~~~s~~~i~p~~~i~Q~~~v 77 (115)
T PF02883_consen 22 NPNQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQLQPPSSSTIPPGQQITQVIKV 77 (115)
T ss_dssp ETTEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEEEEESS-SSB-TTTEEEEEEEE
T ss_pred CCCEEEEEEEEEECCCCCcceEEEEEEeccccEEEEeCCCCCeeCCCCeEEEEEEE
Confidence 36688899999999988875 8887766776655 466 4599998888777665
No 15
>PF03173 CHB_HEX: Putative carbohydrate binding domain; InterPro: IPR004866 This domain represents the N-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. Chitobiases degrade chitin, which forms the exoskeleton in insects and crustaceans, and which is one of the most abundant polysaccharides on earth []. Beta-hexosaminidases are composed of either a HexA/HexB heterodimer or a HexB homodimer, and can hydrolyse diverse substrates, including GM(2)-gangliosides; mutations in this enzyme are associated with Tay-Sachs disease []. HexB is structurally similar to chitobiase, consisting of a beta sandwich structure; this structure is similar to that found in the cellulose-binding domain of cellulase from Cellulomonas fimi (IPR001919 from INTERPRO), suggesting that it may function as a carbohydrate-binding domain.; GO: 0030246 carbohydrate binding; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=82.55 E-value=2.6 Score=34.21 Aligned_cols=50 Identities=24% Similarity=0.377 Sum_probs=33.3
Q ss_pred CeEEEEEEEEcCCCCeE---------------------EEEEeeCCccceeecCCcee--eCCCCeEEEEEEe
Q 030093 12 KQVRSAIKIKNTSKSHV---------------------AFKFQTTAPKSCFMRPPGAI--LAPGESLIATVFK 61 (183)
Q Consensus 12 k~~~~~LtL~N~s~~~V---------------------AFKVKTTaP~~Y~VrP~~Gi--I~Pg~s~~I~V~l 61 (183)
.-....|+|+|+++.++ .|+|.-=+-+.|++.|.-|+ |+||+++.|.+.-
T Consensus 30 ~c~~~~ltl~n~~~~~~~~~dW~IYf~~ir~i~~~~s~~f~i~hinGDl~kl~Pt~~F~gl~~Ges~~I~~~~ 102 (164)
T PF03173_consen 30 SCFRAELTLTNPGDAPLPKSDWAIYFSSIRPILQVDSDQFKITHINGDLHKLTPTAGFKGLAPGESLEIPFVG 102 (164)
T ss_dssp -EEEEEEEEEE-SS-B------EEEEE-SS-EEEESSTTEEEEE-STTEEEEEE-TT---B-TTEEEEEEEEE
T ss_pred cceEEEEEEEcCCCccCCCCCeEEEEecceeeeccCCCCeEEEEEcCeEEEEeECCCCCccCCCCEEEEEEEc
Confidence 34567788888765332 36676667788999999997 8999999999885
No 16
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=82.17 E-value=26 Score=29.50 Aligned_cols=101 Identities=9% Similarity=0.126 Sum_probs=61.5
Q ss_pred eCCCCCeEEEEEEEEcCCCCeEEEEEeeCC--------ccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCC
Q 030093 7 QDEAGKQVRSAIKIKNTSKSHVAFKFQTTA--------PKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSR 78 (183)
Q Consensus 7 ~~~~~k~~~~~LtL~N~s~~~VAFKVKTTa--------P~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~k 78 (183)
-++.+ ....+|+|+|.++.++.-..-+.. ..-|.|-|+.--|+||+...|.|.. .. ...|.|. -
T Consensus 32 i~~~~-~~~~sl~l~N~~~~p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~---~~--~~lP~Dr--E 103 (227)
T PRK15299 32 IFHGD-AKDASISISNSDNVPYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIR---TG--GNLPEDR--E 103 (227)
T ss_pred EEeCC-CcEEEEEEEeCCCCcEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEE---CC--CCCCCcc--e
Confidence 33433 457899999998876554432211 1239999999999999999999987 22 1123332 2
Q ss_pred ceEEEEEEEeCCCCCChhhhhhccCC-CcceEEEeEEEEeCCC
Q 030093 79 DKFKIISMKVKADVDYVPELFDEQKD-QTAAEQILRVVFLNPE 120 (183)
Q Consensus 79 DKFlIqs~~v~~~~d~~~elwk~~~~-~~i~e~KLrV~f~~p~ 120 (183)
--|.+....+++..+. ..... ......+|++.|-++.
T Consensus 104 slf~lnv~eIP~~~~~-----~~~n~l~iavr~riKLfyRP~~ 141 (227)
T PRK15299 104 SLYWLDIKSIPSSNPD-----NKHNTLMLAVKAEFKLIYRPKA 141 (227)
T ss_pred EEEEEEeEecCCCCcc-----cccceEEEEEeeeeeEEEcccc
Confidence 3577777777763221 00111 2334677788886654
No 17
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=82.00 E-value=4.4 Score=37.19 Aligned_cols=54 Identities=22% Similarity=0.290 Sum_probs=39.5
Q ss_pred CCCCeEEEEEEEEcCCCCeEEEEEeeCCccc-------eeecCCc-------e-------eeCCCCeEEEEEEee
Q 030093 9 EAGKQVRSAIKIKNTSKSHVAFKFQTTAPKS-------CFMRPPG-------A-------ILAPGESLIATVFKF 62 (183)
Q Consensus 9 ~~~k~~~~~LtL~N~s~~~VAFKVKTTaP~~-------Y~VrP~~-------G-------iI~Pg~s~~I~V~l~ 62 (183)
-+++..+-++++||.++.+|-.+==+|+.-+ |...|+. | -|.|||+.+|.|..+
T Consensus 279 VPGR~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~v~aq 353 (399)
T TIGR03079 279 VPGRALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVKMEAK 353 (399)
T ss_pred cCCcEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcCCCcceEEEEEEe
Confidence 3688999999999999999987744444333 3333332 2 289999999999983
No 18
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=79.62 E-value=31 Score=29.39 Aligned_cols=102 Identities=12% Similarity=0.121 Sum_probs=61.8
Q ss_pred CeEEEEEEEEcCCCCeEEEEEeeCCcc----------ceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceE
Q 030093 12 KQVRSAIKIKNTSKSHVAFKFQTTAPK----------SCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKF 81 (183)
Q Consensus 12 k~~~~~LtL~N~s~~~VAFKVKTTaP~----------~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKF 81 (183)
+....+|+|.|.++.++.--.-...-+ -|.|-|+.--|+||+...|.|.. ... ...|.|.. --|
T Consensus 39 ~~~~~sv~l~N~~~~p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~---~~~-~~lP~DrE--Slf 112 (246)
T PRK09926 39 DQKDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMY---TAS-TALPKDRE--SVF 112 (246)
T ss_pred CCceEEEEEEeCCCCcEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEe---CCC-CCCCCCce--EEE
Confidence 446788999999988776554332111 29999999999999999999997 221 01343322 347
Q ss_pred EEEEEEeCCCCCChhhhhhccCC-CcceEEEeEEEEeCCCC
Q 030093 82 KIISMKVKADVDYVPELFDEQKD-QTAAEQILRVVFLNPER 121 (183)
Q Consensus 82 lIqs~~v~~~~d~~~elwk~~~~-~~i~e~KLrV~f~~p~~ 121 (183)
.+....+++..+.... +.... +.....+|++-|-+..-
T Consensus 113 ~lnv~eIP~~~~~~~~--~~~n~l~iair~~IKLFyRP~~l 151 (246)
T PRK09926 113 WFNVLEVPPKPDAEKV--ANQSLLQLAFRTRIKLFYRPDGL 151 (246)
T ss_pred EEEeeecCCCCccccc--cccceEEEeeeeeEEEEEcCccC
Confidence 7776777663221000 00111 23346778887766543
No 19
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=79.07 E-value=19 Score=27.54 Aligned_cols=58 Identities=21% Similarity=0.312 Sum_probs=41.6
Q ss_pred eEEeCCCCCeEEEEEEEEcCCCCeEEEEEe-----eCCccc--e-----------------eec-CCceeeCCCCeEEEE
Q 030093 4 IFFQDEAGKQVRSAIKIKNTSKSHVAFKFQ-----TTAPKS--C-----------------FMR-PPGAILAPGESLIAT 58 (183)
Q Consensus 4 L~F~~~~~k~~~~~LtL~N~s~~~VAFKVK-----TTaP~~--Y-----------------~Vr-P~~GiI~Pg~s~~I~ 58 (183)
..+...+++...-.++|+|.|+..+-|+|. |+..+. | .|. |..-.|+|+++..|.
T Consensus 19 FdL~~~P~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl~~~~sk~V~ 98 (121)
T PF06030_consen 19 FDLKVKPGQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTLPPNESKTVT 98 (121)
T ss_pred EEEEeCCCCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEECCCCEEEEE
Confidence 345578999999999999999999999985 332322 2 122 233458888888888
Q ss_pred EEe
Q 030093 59 VFK 61 (183)
Q Consensus 59 V~l 61 (183)
+.+
T Consensus 99 ~~i 101 (121)
T PF06030_consen 99 FTI 101 (121)
T ss_pred EEE
Confidence 776
No 20
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=78.46 E-value=37 Score=28.81 Aligned_cols=97 Identities=11% Similarity=0.125 Sum_probs=59.4
Q ss_pred CeEEEEEEEEcCCCCeEEEEEeeC------CccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEEEEE
Q 030093 12 KQVRSAIKIKNTSKSHVAFKFQTT------APKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIIS 85 (183)
Q Consensus 12 k~~~~~LtL~N~s~~~VAFKVKTT------aP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKFlIqs 85 (183)
.....+|+|+|.++.++.-..... ..--|.|-|+.--|+||+...|.|.. ... ..|.|. ---|.+..
T Consensus 36 ~~~~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPPlfrl~p~~~q~lRI~~---~~~--~LP~DR--ESlf~lnv 108 (229)
T PRK15211 36 GRKNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPPFFKVRPKEKQIIRIMK---TDS--ALPKDR--ESLFWLNV 108 (229)
T ss_pred CCceEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEE---CCC--CCCCCc--eEEEEEEE
Confidence 345789999999988754433221 11249999999999999999999997 221 224433 23566666
Q ss_pred EEeCCCCCChhhhhhccCC-CcceEEEeEEEEeCCC
Q 030093 86 MKVKADVDYVPELFDEQKD-QTAAEQILRVVFLNPE 120 (183)
Q Consensus 86 ~~v~~~~d~~~elwk~~~~-~~i~e~KLrV~f~~p~ 120 (183)
..+|+..+. ..... +.....+|++-|-|..
T Consensus 109 ~~IP~~~~~-----~~~n~l~iair~~iKLfyRP~~ 139 (229)
T PRK15211 109 QEIPPKPKA-----SEGNVLAVALNTQVKLIYRPKA 139 (229)
T ss_pred EEcCCCCCc-----cccceEEEEEEeeeeeEEcchh
Confidence 666653211 01111 2334677777776653
No 21
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=78.32 E-value=42 Score=28.65 Aligned_cols=95 Identities=13% Similarity=0.140 Sum_probs=59.9
Q ss_pred CeEEEEEEEEcCCCCeEEEEEeeC----------C----ccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCC
Q 030093 12 KQVRSAIKIKNTSKSHVAFKFQTT----------A----PKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKS 77 (183)
Q Consensus 12 k~~~~~LtL~N~s~~~VAFKVKTT----------a----P~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~ 77 (183)
.....+|+|.|.++.+ |=|++. . ..-|.|-|+.--|+||+...+.|.. .. ...|.|.
T Consensus 36 ~~k~~sv~l~N~~~~p--~LvQswv~~~~~w~~~~~~~~~~PFivtPPlfrl~p~~~~~lRI~~---~~--~~LP~DR-- 106 (234)
T PRK15192 36 GAPALSVPVSNHSEAS--WLIDTHILPGGRWPGTKNEGNITPFVVTPPLFMLSARQENSMRVVY---TG--APLPADR-- 106 (234)
T ss_pred CCceEEEEEEeCCCCc--EEEEEEeccCccccccCCccccCCEEEcCCeEEECCCCceEEEEEE---CC--CCCCCcc--
Confidence 4456789999999876 555541 1 1139999999999999999999997 22 1123332
Q ss_pred CceEEEEEEEeCCCCCChhhhhhccCCCcceEEEeEEEEeCCCC
Q 030093 78 RDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPER 121 (183)
Q Consensus 78 kDKFlIqs~~v~~~~d~~~elwk~~~~~~i~e~KLrV~f~~p~~ 121 (183)
---|.+....+|+..+. ++ .=......+|++-|-|..-
T Consensus 107 ESlf~lnv~~IPp~~~~-----~n-~l~iair~riKlFYRP~~L 144 (234)
T PRK15192 107 ESLFTLSIAAIPSGKPE-----AN-RVQMAFRSALKLLYRPEGL 144 (234)
T ss_pred eEEEEEEEEecCCCCCC-----Cc-EEEEEEEeeeeEEEccccc
Confidence 23577777777763221 11 1123346777777776543
No 22
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=78.19 E-value=9 Score=27.89 Aligned_cols=52 Identities=21% Similarity=0.235 Sum_probs=38.1
Q ss_pred CCCeEEEEEEEEcCCCCe--------EEEEEeeCCcc--ceeecCCceeeCCCCeEEEEEEe
Q 030093 10 AGKQVRSAIKIKNTSKSH--------VAFKFQTTAPK--SCFMRPPGAILAPGESLIATVFK 61 (183)
Q Consensus 10 ~~k~~~~~LtL~N~s~~~--------VAFKVKTTaP~--~Y~VrP~~GiI~Pg~s~~I~V~l 61 (183)
.|+.....++++|+++.+ .|+-|--|.-- .+...-..+.|.||++..+.+.+
T Consensus 13 vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i 74 (107)
T PF00927_consen 13 VGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTI 74 (107)
T ss_dssp TTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE
T ss_pred CCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEE
Confidence 588999999999999876 55555433322 25677888899999999999998
No 23
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=75.54 E-value=11 Score=26.72 Aligned_cols=44 Identities=16% Similarity=0.114 Sum_probs=30.9
Q ss_pred EEEEEEEcCCCCeEEEEEeeCCcccee-ecCCceeeCCCCeEEEEEEe
Q 030093 15 RSAIKIKNTSKSHVAFKFQTTAPKSCF-MRPPGAILAPGESLIATVFK 61 (183)
Q Consensus 15 ~~~LtL~N~s~~~VAFKVKTTaP~~Y~-VrP~~GiI~Pg~s~~I~V~l 61 (183)
.-.|+|.|.+...+.|.|... .|. -.|-.=.|.||++..+..-+
T Consensus 21 ~l~l~l~N~g~~~~~~~v~~~---~y~~~~~~~~~v~ag~~~~~~w~l 65 (89)
T PF05506_consen 21 NLRLTLSNPGSAAVTFTVYDN---AYGGGGPWTYTVAAGQTVSLTWPL 65 (89)
T ss_pred EEEEEEEeCCCCcEEEEEEeC---CcCCCCCEEEEECCCCEEEEEEee
Confidence 568999999999999999762 122 23344456667777777665
No 24
>PF02753 PapD_C: Pili assembly chaperone PapD, C-terminal domain; InterPro: IPR016148 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the C-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of eight strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2UY7_C 2UY6_A 2W07_A 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 1PDK_A 2XG4_A ....
Probab=75.25 E-value=3.6 Score=27.67 Aligned_cols=44 Identities=14% Similarity=0.078 Sum_probs=27.6
Q ss_pred EEEEcCCCCeEEEE-EeeCCccceeecCCceeeCCCCeEEEEEEe
Q 030093 18 IKIKNTSKSHVAFK-FQTTAPKSCFMRPPGAILAPGESLIATVFK 61 (183)
Q Consensus 18 LtL~N~s~~~VAFK-VKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l 61 (183)
|+++|+|..+|.|- ++....++=.--...++|+|.++..+.+.-
T Consensus 1 L~v~NpTPy~vtl~~~~~~~~~~~~~~~~~~mi~P~s~~~~~~~~ 45 (68)
T PF02753_consen 1 LTVKNPTPYYVTLSSLKLNGGGKKKKIDNSGMIAPFSSKSFPLPA 45 (68)
T ss_dssp EEEEE-SSS-EEEEEEEETHHHCCEECCCETEE-TTEEEEEETST
T ss_pred CEEECCCCcEEEEEeeeecccccccccCCceEECCCCceEEeccC
Confidence 78999999999886 444434433333444499999998876653
No 25
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=73.77 E-value=54 Score=27.65 Aligned_cols=94 Identities=13% Similarity=0.206 Sum_probs=57.9
Q ss_pred eEEEEEEEEcCCCCeEEEEEee--C--C-----ccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEEE
Q 030093 13 QVRSAIKIKNTSKSHVAFKFQT--T--A-----PKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKI 83 (183)
Q Consensus 13 ~~~~~LtL~N~s~~~VAFKVKT--T--a-----P~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKFlI 83 (183)
....+|+|.|.++.++. |++ . . ..-|.|-|+.--|+||+...|.|.. ... ..|.|. ---|.+
T Consensus 34 ~~~~si~i~N~~~~p~L--vQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~---~~~--~LP~Dr--Eslf~l 104 (226)
T PRK15295 34 NDESSINVENKDSKANL--VQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIR---SGA--PLPADR--ESMYWL 104 (226)
T ss_pred CceeEEEEEeCCCCcEE--EEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEE---CCC--CCCCCc--eEEEEE
Confidence 35778999999987644 543 1 1 1249999999999999999999987 221 123332 234666
Q ss_pred EEEEeCCCCCChhhhhhccCC-CcceEEEeEEEEeCCC
Q 030093 84 ISMKVKADVDYVPELFDEQKD-QTAAEQILRVVFLNPE 120 (183)
Q Consensus 84 qs~~v~~~~d~~~elwk~~~~-~~i~e~KLrV~f~~p~ 120 (183)
....+++..+. ..... ......+|++-|-|..
T Consensus 105 nv~~IP~~~~~-----~~~n~l~iair~rIKLFyRP~~ 137 (226)
T PRK15295 105 NIKGIPSIDDN-----ASANRVEISINTQIKLIYRPPA 137 (226)
T ss_pred EEEEcCCCCCc-----CccceEEEEeeeeeeEEEchhh
Confidence 66666663221 01111 2334667777776654
No 26
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=73.42 E-value=29 Score=29.74 Aligned_cols=100 Identities=11% Similarity=0.102 Sum_probs=59.2
Q ss_pred eEEEEEEEEcCCCCeEEEEEeeCC------c-----cceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceE
Q 030093 13 QVRSAIKIKNTSKSHVAFKFQTTA------P-----KSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKF 81 (183)
Q Consensus 13 ~~~~~LtL~N~s~~~VAFKVKTTa------P-----~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKF 81 (183)
.....|+|.|.++.++....-+.. | .-|.|-|+.--|+||+...|.|.. .. ....|.|.. --|
T Consensus 43 ~~~~sl~l~N~~~~p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~---~~-~~~lP~DRE--Slf 116 (253)
T PRK15249 43 ASSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIY---NN-TKKLPQDRE--SVF 116 (253)
T ss_pred CcceeEEEEcCCCCcEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEE---cC-CCCCCCCce--EEE
Confidence 366789999999887655542211 1 139999999999999999999997 21 112343322 246
Q ss_pred EEEEEEeCCCCCChhhhhhccCC-CcceEEEeEEEEeCCCC
Q 030093 82 KIISMKVKADVDYVPELFDEQKD-QTAAEQILRVVFLNPER 121 (183)
Q Consensus 82 lIqs~~v~~~~d~~~elwk~~~~-~~i~e~KLrV~f~~p~~ 121 (183)
.+....+|+..+...+ .... ......+|++-|-|..-
T Consensus 117 ~lnv~eIP~~~~~~~~---~~n~l~ialr~~IKLFyRP~~L 154 (253)
T PRK15249 117 WFNVLQVPPTNIGSDS---GQNKMLVMLRSRIKLFYRPDGL 154 (253)
T ss_pred EEEeeecCCCCccccc---ccceEEEEeeeEEEEEEccccC
Confidence 6666666653221000 1111 23346677777766543
No 27
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=73.36 E-value=17 Score=25.88 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=15.4
Q ss_pred EEEEEEEEcCCCCeEEEEEee
Q 030093 14 VRSAIKIKNTSKSHVAFKFQT 34 (183)
Q Consensus 14 ~~~~LtL~N~s~~~VAFKVKT 34 (183)
+.-.|+|+|+++.+|-+.+.|
T Consensus 2 v~~~l~v~N~s~~~v~l~f~s 22 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPS 22 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESS
T ss_pred EEEEEEEEeCCCCeEEEEeCC
Confidence 566899999999999888754
No 28
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=73.00 E-value=30 Score=29.84 Aligned_cols=76 Identities=12% Similarity=0.029 Sum_probs=50.2
Q ss_pred EeCCCCCeEEEEEEEEcCCCCeEEEEEee----CC---ccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCC
Q 030093 6 FQDEAGKQVRSAIKIKNTSKSHVAFKFQT----TA---PKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSR 78 (183)
Q Consensus 6 F~~~~~k~~~~~LtL~N~s~~~VAFKVKT----Ta---P~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~k 78 (183)
+-|+.++ ...+|+|.|.++.+ |-|++ .. ..-|.|.|+.--|+||+...+.|.. .. ...|.|..
T Consensus 49 vIy~~~~-~~~sl~i~N~~~~p--~LvQsWvd~~~~~~~~pFiVtPPLfRLep~~~~~lRIi~---~~--~~LP~DRE-- 118 (246)
T PRK15233 49 VIYKEDA-PSTSFWIMNEKEYP--ILVQTQVYNDDKSSKAPFIVTPPILKVESNARTRLKVIP---TS--NLFNKNEE-- 118 (246)
T ss_pred EEEeCCC-cEEEEEEEcCCCCc--EEEEEEEecCCCCccCCEEECCCeEEECCCCceEEEEEE---CC--CCCCcCce--
Confidence 3344443 66789999987776 55554 11 1249999999999999999999998 21 12344322
Q ss_pred ceEEEEEEEeCCC
Q 030093 79 DKFKIISMKVKAD 91 (183)
Q Consensus 79 DKFlIqs~~v~~~ 91 (183)
--|.+....+|+.
T Consensus 119 Slfwlnv~~IPp~ 131 (246)
T PRK15233 119 SLYWLCVKGVPPL 131 (246)
T ss_pred EEEEEEEEEcCCC
Confidence 2466666667664
No 29
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=67.99 E-value=32 Score=24.94 Aligned_cols=53 Identities=19% Similarity=0.208 Sum_probs=32.4
Q ss_pred CCCeEEEEEEEEcCCCCeEE-----EEEeeCCccceeec---------CCceeeCCCCeEEEEEEee
Q 030093 10 AGKQVRSAIKIKNTSKSHVA-----FKFQTTAPKSCFMR---------PPGAILAPGESLIATVFKF 62 (183)
Q Consensus 10 ~~k~~~~~LtL~N~s~~~VA-----FKVKTTaP~~Y~Vr---------P~~GiI~Pg~s~~I~V~l~ 62 (183)
-++-+.-.++|+|.++.++. |++.+..-..|... +..+-|.||+++...+...
T Consensus 34 g~~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~ 100 (123)
T PF11611_consen 34 GNKFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFE 100 (123)
T ss_dssp -SEEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEE
T ss_pred CCEEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEE
Confidence 34568889999999987775 67876665665432 2457899999999998873
No 30
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=67.37 E-value=78 Score=26.91 Aligned_cols=101 Identities=11% Similarity=0.178 Sum_probs=61.0
Q ss_pred CeEEEEEEEEcCCCCeEEEEEeeC------Ccc----ceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceE
Q 030093 12 KQVRSAIKIKNTSKSHVAFKFQTT------APK----SCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKF 81 (183)
Q Consensus 12 k~~~~~LtL~N~s~~~VAFKVKTT------aP~----~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKF 81 (183)
.....+|+|.|.++.++.=-.-.. .|. -|.|-|+.--|+||+...+.|.+ ... ...|.|. ---|
T Consensus 24 ~~~~~sv~l~N~~~~p~LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~~~~~~lRI~~---~~~-~~LP~DR--ESlf 97 (233)
T PRK15246 24 DDVAQSLTLSNDNTTPMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLL---SSR-QQLATDR--ESLF 97 (233)
T ss_pred CCceEEEEEEeCCCCcEEEEEEEeCCCCccCcccccCcEEECCcceEECCCCceEEEEEE---CCC-CCCCCCc--eEEE
Confidence 456788999999987644333111 111 49999999999999999999997 211 1123332 2357
Q ss_pred EEEEEEeCCCCCChhhhhhccCC-CcceEEEeEEEEeCCCC
Q 030093 82 KIISMKVKADVDYVPELFDEQKD-QTAAEQILRVVFLNPER 121 (183)
Q Consensus 82 lIqs~~v~~~~d~~~elwk~~~~-~~i~e~KLrV~f~~p~~ 121 (183)
.+....+++..+... +.... ......+|++-|-|..-
T Consensus 98 ~lnv~~IP~~~~~~~---~~~~~l~iair~rIKlFyRP~~L 135 (233)
T PRK15246 98 WLNIYQIPPVTQDIK---NHPRKLVLPLRLRLKILIRPTGL 135 (233)
T ss_pred EEEEEEcCCCCcccc---cccceEEEEeeeEEEEEECCccc
Confidence 777777776432200 00011 23346778887877543
No 31
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=65.95 E-value=20 Score=32.93 Aligned_cols=53 Identities=23% Similarity=0.221 Sum_probs=35.3
Q ss_pred CCCCeEEEEEEEEcCCCCeEEEEEeeCCccce----------------------eecCCceeeCCCCeEEEEEEee
Q 030093 9 EAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSC----------------------FMRPPGAILAPGESLIATVFKF 62 (183)
Q Consensus 9 ~~~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y----------------------~VrP~~GiI~Pg~s~~I~V~l~ 62 (183)
.+++..+-+|+++|.++++|-..==+|+.-+| .|.|+ +-|+||++.+++|..+
T Consensus 260 vpgR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~-~pI~PGETrtl~V~a~ 334 (381)
T PF04744_consen 260 VPGRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDN-SPIAPGETRTLTVEAQ 334 (381)
T ss_dssp SSSSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES---S-B-TT-EEEEEEEEE
T ss_pred cCCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCC-CCcCCCceEEEEEEee
Confidence 47889999999999999999877434444443 23333 3589999999999984
No 32
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=65.80 E-value=39 Score=28.95 Aligned_cols=71 Identities=11% Similarity=0.165 Sum_probs=48.8
Q ss_pred CeEEEEEEEEcCCCCeEEEEEee----CC---ccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEEEE
Q 030093 12 KQVRSAIKIKNTSKSHVAFKFQT----TA---PKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKII 84 (183)
Q Consensus 12 k~~~~~LtL~N~s~~~VAFKVKT----Ta---P~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKFlIq 84 (183)
.....+|+|.|.++.+ |=|++ .. ..-|.|-|+.--|+|++...+.|.. .. ...|.|.. --|.+.
T Consensus 42 ~~k~~sl~v~N~~~~p--yLvQsWvd~~~~~~~~pFivtPPlfRlep~~~~~lRI~~---~~--~~LP~DRE--SlFwln 112 (237)
T PRK15224 42 GTAGATLSVSNPQNYP--ILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVR---TG--GDMPTDRE--TLQWVC 112 (237)
T ss_pred CCcEEEEEEEcCCCCc--EEEEEEEeCCCCCccCCEEECCCeEEECCCCceEEEEEE---CC--CCCCCcee--EEEEEE
Confidence 3456789999998776 66665 11 1239999999999999999999998 21 12344432 356666
Q ss_pred EEEeCCC
Q 030093 85 SMKVKAD 91 (183)
Q Consensus 85 s~~v~~~ 91 (183)
...+|+.
T Consensus 113 v~~IPp~ 119 (237)
T PRK15224 113 IKAVPPE 119 (237)
T ss_pred EEEcCCC
Confidence 6666663
No 33
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=61.52 E-value=23 Score=25.81 Aligned_cols=50 Identities=18% Similarity=0.325 Sum_probs=34.2
Q ss_pred CeEEEEEEEEcCCCCeEE-EEEeeCCc-----------------cceeecCCc--eeeCCCCeEEEEEEe
Q 030093 12 KQVRSAIKIKNTSKSHVA-FKFQTTAP-----------------KSCFMRPPG--AILAPGESLIATVFK 61 (183)
Q Consensus 12 k~~~~~LtL~N~s~~~VA-FKVKTTaP-----------------~~Y~VrP~~--GiI~Pg~s~~I~V~l 61 (183)
.-....|+|+|.++.++. ++|.=+-| ..|.|+|.. +.|+||+++.+-+..
T Consensus 13 ~Gf~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~~~Wna~~s~~g~~~~v~~~~wn~~i~~G~s~~~Gf~~ 82 (101)
T PF00553_consen 13 GGFQGEVTVTNNGSSPINGWTVTFTFPSGQTITSSWNATVSQSGNTVTVTNPSWNGTIAPGGSVTFGFQA 82 (101)
T ss_dssp SEEEEEEEEEESSSSTEESEEEEEEESTTEEEEEEESCEEEEETTEEEEEESSTCSEEEESEEEEEEEEE
T ss_pred CCeEEEEEEEECCCCccCCEEEEEEeCCCCEEeeeeccEEEecCCEEEEEcCCcCcccCCCCeEEEEEEE
Confidence 345678999999887752 33332222 457888654 699999998887665
No 34
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=60.34 E-value=1.1e+02 Score=26.07 Aligned_cols=100 Identities=13% Similarity=0.173 Sum_probs=59.4
Q ss_pred CeEEEEEEEEcCCCC-eEEEEEee-C-C---ccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEEEEE
Q 030093 12 KQVRSAIKIKNTSKS-HVAFKFQT-T-A---PKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIIS 85 (183)
Q Consensus 12 k~~~~~LtL~N~s~~-~VAFKVKT-T-a---P~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKFlIqs 85 (183)
.....+++|+|.++. +..-..-. + . ..-|.|-|+.--|+||+...+.|.. .. ...|.|. ---|.+..
T Consensus 41 ~~~~~sv~i~N~~~~~p~LvQsWv~~~~~~~~~pFivtPPlfrl~~~~~~~lRI~~---~~--~~lP~DR--ESlf~lnv 113 (228)
T PRK15188 41 GSKQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPPLFVIQPKKENILRIMY---VG--PSLPTDR--ESVFYLNS 113 (228)
T ss_pred CCceEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEE---CC--CCCCCCc--eEEEEEEE
Confidence 345789999999854 34322111 1 1 1249999999999999999999997 21 1123333 24566666
Q ss_pred EEeCCCCCChhhhhhccCC-CcceEEEeEEEEeCCCCC
Q 030093 86 MKVKADVDYVPELFDEQKD-QTAAEQILRVVFLNPERP 122 (183)
Q Consensus 86 ~~v~~~~d~~~elwk~~~~-~~i~e~KLrV~f~~p~~p 122 (183)
..+++..+... +... ......+|++-|-|..-+
T Consensus 114 ~~IP~~~~~~~----~~n~l~ia~r~~IKLFyRP~~l~ 147 (228)
T PRK15188 114 KAIPSVDKNKL----TGNSLQIATQSVIKLFIRPKNLA 147 (228)
T ss_pred EecCCCCcccc----ccceEEEEEeeeEEEEECCccCC
Confidence 66666322100 1111 233467788877765543
No 35
>PRK15285 putative fimbrial chaperone protein StfD; Provisional
Probab=59.92 E-value=69 Score=27.61 Aligned_cols=74 Identities=11% Similarity=0.132 Sum_probs=45.8
Q ss_pred CeEEEEEEEEcCCCC-eEEEEE--eeCCcc----ceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEEEE
Q 030093 12 KQVRSAIKIKNTSKS-HVAFKF--QTTAPK----SCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKII 84 (183)
Q Consensus 12 k~~~~~LtL~N~s~~-~VAFKV--KTTaP~----~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKFlIq 84 (183)
.....+++|+|.++. ++.--. -....+ -|.|-|+.--|+||+...+.|.. .+.....|.|.. --|-+.
T Consensus 39 ~~~~~sv~i~N~~~~~p~LvQsWvd~~~~~~~~~pFiVtPPlfRl~p~~~~~lRI~~---~~~~~~LP~DRE--Slfwln 113 (250)
T PRK15285 39 EDKSISVDLKNANSKLPYLAQSWVEDEKGVKITSPLIVVPPVQRIEPSAIGQVKIQG---MPALASLPQDRE--TLFYYN 113 (250)
T ss_pred CCceEEEEEEeCCCCCcEEEEEEeeCCCCCcccCCEEEcCCeEEECCCCceEEEEEE---CCCCCCCCCCce--EEEEEE
Confidence 445678999999864 433222 111111 39999999999999999999997 221112233322 356666
Q ss_pred EEEeCC
Q 030093 85 SMKVKA 90 (183)
Q Consensus 85 s~~v~~ 90 (183)
...+|+
T Consensus 114 v~~IPp 119 (250)
T PRK15285 114 VREIPP 119 (250)
T ss_pred EEEcCC
Confidence 666665
No 36
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=58.44 E-value=1.1e+02 Score=25.80 Aligned_cols=96 Identities=17% Similarity=0.270 Sum_probs=59.8
Q ss_pred CeEEEEEEEEcCCCCeEEEEEee---CC-----c----cceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCc
Q 030093 12 KQVRSAIKIKNTSKSHVAFKFQT---TA-----P----KSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRD 79 (183)
Q Consensus 12 k~~~~~LtL~N~s~~~VAFKVKT---Ta-----P----~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kD 79 (183)
.....+|+|.|.++.+ |=|++ +. | .-|.|-|+.--|+||+...+.|.. .. ...|.|. --
T Consensus 32 ~~~~~si~i~N~~~~p--yLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~---~~--~~LP~DR--ES 102 (226)
T PRK15218 32 QKKDITVQLMNDGKRS--SLIQAWIDNGDTSLPPEKLQVPFIMTPPVIRVAANSGQQLKIKK---LA--NNLPGDR--ES 102 (226)
T ss_pred CCcEEEEEEEcCCCCc--EEEEEEEeCCCCCCCcccccCCEEECCCeEEECCCCceEEEEEE---CC--CCCCcce--eE
Confidence 4456788999999876 44443 11 1 149999999999999999999997 22 1234433 23
Q ss_pred eEEEEEEEeCCCCCChhhhhhccCC-CcceEEEeEEEEeCCC
Q 030093 80 KFKIISMKVKADVDYVPELFDEQKD-QTAAEQILRVVFLNPE 120 (183)
Q Consensus 80 KFlIqs~~v~~~~d~~~elwk~~~~-~~i~e~KLrV~f~~p~ 120 (183)
-|.+....+|+..+.. +.... +.....+|++-|-|..
T Consensus 103 lfwlnv~~IPp~~~~~----~~~n~L~iairtrIKLfYRP~~ 140 (226)
T PRK15218 103 LFYLNVLDIPPNSDEN----KDKNIIKFALQNRIKLIYRPPG 140 (226)
T ss_pred EEEEEEEEcCCCCCCc----CcCcEEEEEeeeEEEEEEcccc
Confidence 5777777777643211 01111 2333677777776654
No 37
>PRK15274 putative periplasmic fimbrial chaperone protein SteC; Provisional
Probab=57.08 E-value=80 Score=27.38 Aligned_cols=75 Identities=13% Similarity=0.127 Sum_probs=47.8
Q ss_pred CeEEEEEEEEcCCCC-eEEEEEee-C-C----ccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEEEE
Q 030093 12 KQVRSAIKIKNTSKS-HVAFKFQT-T-A----PKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKII 84 (183)
Q Consensus 12 k~~~~~LtL~N~s~~-~VAFKVKT-T-a----P~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKFlIq 84 (183)
.....+|+|+|.++. ++.-..-. . . ..-|.|-|+.--|+||+...|.|.. .......|.|.. --|-+.
T Consensus 40 ~~~~~sv~v~N~~~~~p~LVQsWvdd~~~~~~~~pFivtPPLfRlep~~~q~lRI~~---~~~~~~LP~DRE--SlFwlN 114 (257)
T PRK15274 40 NENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQP---LPAAASLPQDRE--SLFYFN 114 (257)
T ss_pred CCceEEEEEEeCCCCCcEEEEEEccCCCCCcccCCEEEcCCeEEECCCCceEEEEEE---CCCCCCCCCcee--EEEEEE
Confidence 444678999999865 54333211 1 1 1149999999999999999999997 221112344332 356777
Q ss_pred EEEeCCC
Q 030093 85 SMKVKAD 91 (183)
Q Consensus 85 s~~v~~~ 91 (183)
...+|+.
T Consensus 115 v~eIPp~ 121 (257)
T PRK15274 115 VREIPPK 121 (257)
T ss_pred EEEcCCC
Confidence 7777763
No 38
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=55.71 E-value=63 Score=26.47 Aligned_cols=51 Identities=22% Similarity=0.312 Sum_probs=36.5
Q ss_pred CCCeEEEEEEEEcCCCCeEEEEEeeCC----ccceeecCC-----ceeeCCCCeEEEEEEe
Q 030093 10 AGKQVRSAIKIKNTSKSHVAFKFQTTA----PKSCFMRPP-----GAILAPGESLIATVFK 61 (183)
Q Consensus 10 ~~k~~~~~LtL~N~s~~~VAFKVKTTa----P~~Y~VrP~-----~GiI~Pg~s~~I~V~l 61 (183)
.++.+...++|+|..+. -||.|+-+. ++.|-+.-- ...|+||+++.-.+++
T Consensus 36 ~g~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv 95 (181)
T PF05753_consen 36 EGEDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVV 95 (181)
T ss_pred CCcEEEEEEEEEECCCC-eEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEE
Confidence 47899999999999766 799998776 244443211 2457788877777776
No 39
>smart00637 CBD_II CBD_II domain.
Probab=55.07 E-value=53 Score=23.17 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=31.2
Q ss_pred EEEEEEEEcCCCCeE-----EEEEee--C-----------CccceeecCCc--eeeCCCCeEEEEEEe
Q 030093 14 VRSAIKIKNTSKSHV-----AFKFQT--T-----------APKSCFMRPPG--AILAPGESLIATVFK 61 (183)
Q Consensus 14 ~~~~LtL~N~s~~~V-----AFKVKT--T-----------aP~~Y~VrP~~--GiI~Pg~s~~I~V~l 61 (183)
....|+|+|+++.++ .|.+-- + ....|.++|.. +.|+||+++.+-+..
T Consensus 8 ~~~~v~vtN~~~~~~~~W~v~~~~~~~~~i~~~Wn~~~~~~g~~~~~~~~~wn~~i~~G~s~~~gf~~ 75 (92)
T smart00637 8 FTANVTVTNTGSSAINGWTVTFDLPGGQTVTNSWNATVSQSGGHVTATNASWNGTIAPGGSVSFGFQG 75 (92)
T ss_pred EEEEEEEEeCCCCcccCeEEEEEcCCCcEEeeeEEEEEEecCCEEEEecCccccccCCCCEEEEEEEe
Confidence 467899999876543 444311 0 22368888644 799999988776553
No 40
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=54.18 E-value=41 Score=23.10 Aligned_cols=52 Identities=21% Similarity=0.192 Sum_probs=33.7
Q ss_pred CCCeEEEEEEEEcCCCC-eEEEEEeeCCccceeecCCceeeCCCCeEEEEEEe
Q 030093 10 AGKQVRSAIKIKNTSKS-HVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 61 (183)
Q Consensus 10 ~~k~~~~~LtL~N~s~~-~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l 61 (183)
.++..+-.++|+|.... .=.|+|+-...+...-.-..+-|+||++..+.+.+
T Consensus 17 ~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~~~~~i~~L~~g~~~~v~~~~ 69 (101)
T PF07705_consen 17 PGEPVTITVTVKNNGTADAENVTVRLYLDGNSVSTVTIPSLAPGESETVTFTW 69 (101)
T ss_dssp TTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEEEEEEESEB-TTEEEEEEEEE
T ss_pred CCCEEEEEEEEEECCCCCCCCEEEEEEECCceeccEEECCcCCCcEEEEEEEE
Confidence 47889999999999764 34566653322222222223778999999999998
No 41
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=53.01 E-value=28 Score=29.88 Aligned_cols=56 Identities=13% Similarity=0.059 Sum_probs=33.0
Q ss_pred ceEEeCCCCCeEEEEEEEEcCCCCeEEEE-EeeCCccceeecCCceeeCCCCeEEEEE
Q 030093 3 PIFFQDEAGKQVRSAIKIKNTSKSHVAFK-FQTTAPKSCFMRPPGAILAPGESLIATV 59 (183)
Q Consensus 3 eL~F~~~~~k~~~~~LtL~N~s~~~VAFK-VKTTaP~~Y~VrP~~GiI~Pg~s~~I~V 59 (183)
.|.|....+......|+++|+|..++.|- ++....++ .+....|+|.|+++..+.+
T Consensus 163 ~L~~~~~~~~~~~~~l~v~Nptpyyitl~~l~~~~~~~-~~~~~~~mv~P~s~~~~~l 219 (253)
T PRK15249 163 KLQIKTVNKGSGKSGIVIVNPQPWFASLSNLNVKVNGA-SYNLDADMIAPFSSQTWWL 219 (253)
T ss_pred ceEEEEeeccCCCCEEEEECCCceEEEeeeeeeccCCe-ecCCCCceECCCCccEEEc
Confidence 45555432111223599999999998775 33211221 1222457899999988764
No 42
>PRK15290 lfpB fimbrial chaperone protein; Provisional
Probab=50.92 E-value=1.1e+02 Score=26.15 Aligned_cols=99 Identities=8% Similarity=0.103 Sum_probs=60.6
Q ss_pred CeEEEEEEEEcCCC-CeEEEEEeeC--C-c----cceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEEE
Q 030093 12 KQVRSAIKIKNTSK-SHVAFKFQTT--A-P----KSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKI 83 (183)
Q Consensus 12 k~~~~~LtL~N~s~-~~VAFKVKTT--a-P----~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKFlI 83 (183)
+....+|+|+|.++ .++.--.-.. . . .-|.|-|+.--|+||+...+.|.. ... ...|.|. ---|.+
T Consensus 51 ~~~~~sl~v~N~~~~~p~LvQsWvd~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~---~~~-~~LP~DR--ESlf~l 124 (243)
T PRK15290 51 NNPDKSISVFSKEEKIPYLIQAWVDPFNKEDKSKAPFTVIPPVSRLEPSQEKVLRIIH---TKG-VSLPDDR--ESVFWL 124 (243)
T ss_pred CCceEEEEEEeCCCCCcEEEEEEEecCCCCCcccCCEEEcCCeEEECCCCceEEEEEE---cCC-CCCCCCe--eEEEEE
Confidence 44567899999985 4665554332 1 1 139999999999999999999997 221 1134433 245777
Q ss_pred EEEEeCCCCCChhhhhhccCCCcceEEEeEEEEeCCC
Q 030093 84 ISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE 120 (183)
Q Consensus 84 qs~~v~~~~d~~~elwk~~~~~~i~e~KLrV~f~~p~ 120 (183)
....+|+..+. .+ ++ .=......+|++-|-|..
T Consensus 125 nv~eIPp~~~~-~~--~n-~L~iair~rIKlFyRP~~ 157 (243)
T PRK15290 125 NIKNIPPSASN-KA--TN-SLEIAVKTRIKLFWRPAS 157 (243)
T ss_pred EEEEcCCCCcc-cc--cc-eEEEEEEEeeeEEEeccc
Confidence 77777763221 00 01 112334777888887654
No 43
>PRK15254 fimbrial chaperone protein StdC; Provisional
Probab=49.87 E-value=1.6e+02 Score=25.08 Aligned_cols=98 Identities=14% Similarity=0.144 Sum_probs=58.6
Q ss_pred CeEEEEEEEEcCCC-CeEEEEEee--CC--c-cceeecCCceeeCCCCeEEEEEEeeccCCC-CCCCCCCCCCCceEEEE
Q 030093 12 KQVRSAIKIKNTSK-SHVAFKFQT--TA--P-KSCFMRPPGAILAPGESLIATVFKFVELPE-NNEKPMYQKSRDKFKII 84 (183)
Q Consensus 12 k~~~~~LtL~N~s~-~~VAFKVKT--Ta--P-~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~-~~e~p~~~~~kDKFlIq 84 (183)
+....+++|.|.++ .++.=..-. .. + .-|.|-|+.--|+||+...|.|.. ... ....|.|. ---|.+.
T Consensus 30 ~~~~~sv~v~N~~~~~p~LvQsWv~d~~~~~~~pFivtPPlfrl~p~~~~~lRI~~---~~~~~~~lP~DR--ESlf~ln 104 (239)
T PRK15254 30 PQKTVAITLNNDDKTTPFLAQSWVTDADGVRTDALMALPPLQRIDAGQKSQVRITQ---VRGLTDKLPQDR--ETLFWFN 104 (239)
T ss_pred CCceEEEEEEeCCCCCcEEEEEEEecCCCCCcCCEEEcCCeEEECCCCceEEEEEE---cccCCCCCCCCc--eEEEEEE
Confidence 44677899999975 455433211 11 1 249999999999999999999987 211 11234443 2456666
Q ss_pred EEEeCCCCCChhhhhhccCCCcceEEEeEEEEeCCC
Q 030093 85 SMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE 120 (183)
Q Consensus 85 s~~v~~~~d~~~elwk~~~~~~i~e~KLrV~f~~p~ 120 (183)
...+++..+. +..=......+|++-|-|..
T Consensus 105 v~~IP~~~~~------~n~L~iair~~iKLFyRP~~ 134 (239)
T PRK15254 105 VRGVPPKPED------DNVLQLAMQSQLKLFYRPKA 134 (239)
T ss_pred EEEcCCCCCC------CceEEEEEEeEEeEEEcccc
Confidence 6667663221 00012234677777776654
No 44
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=49.75 E-value=24 Score=23.44 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=13.4
Q ss_pred EEEEEEEEcCCCCeEEEEE
Q 030093 14 VRSAIKIKNTSKSHVAFKF 32 (183)
Q Consensus 14 ~~~~LtL~N~s~~~VAFKV 32 (183)
+...-++...+...||||+
T Consensus 53 i~~v~~~~~~~~~~VA~K~ 71 (71)
T PF08277_consen 53 ISTVQKTDSSSGNKVAFKI 71 (71)
T ss_pred EEEEEEeecCCCeEEEEEC
Confidence 4555556666678999996
No 45
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=47.69 E-value=1.7e+02 Score=24.70 Aligned_cols=100 Identities=10% Similarity=0.140 Sum_probs=66.9
Q ss_pred eEEEEEEEEcCCCCeEEEEEeeC-------CccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEEEEE
Q 030093 13 QVRSAIKIKNTSKSHVAFKFQTT-------APKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIIS 85 (183)
Q Consensus 13 ~~~~~LtL~N~s~~~VAFKVKTT-------aP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKFlIqs 85 (183)
.....|+|.|.++.++.-.+-.- ...-|.|-|+.-.|+||+...|.|.+ .+. ..|.|. ...|.+.-
T Consensus 42 ~k~~sl~l~N~~~~p~LvQ~wvd~~~~~~~~~~pfvvtPPv~rl~p~~~q~vRi~~---~~~--~lP~dr--Eslf~lnv 114 (235)
T COG3121 42 DKETSLTLRNDGNQPYLVQSWVDDGLEPEKSTVPFVVTPPVFRLEPGQEQQLRILY---TGN--KLPADR--ESLFRLNV 114 (235)
T ss_pred CceeEEEEEcCCCCCEEEEEEEcCCCCCccccCCEEecCCeEEECCCCccEEEEEe---cCC--CCCCCc--eeEEEEEe
Confidence 45678999998889998885443 23349999999999999999999998 332 124433 35677777
Q ss_pred EEeCCCCC-ChhhhhhccCCCcceEEEeEEEEeCCCCCC
Q 030093 86 MKVKADVD-YVPELFDEQKDQTAAEQILRVVFLNPERPE 123 (183)
Q Consensus 86 ~~v~~~~d-~~~elwk~~~~~~i~e~KLrV~f~~p~~ps 123 (183)
..+++... .-.. + .-+....++|++-|-++.-+.
T Consensus 115 ~eIPp~~~~~~~~---n-~lq~a~r~riKlf~RP~~l~~ 149 (235)
T COG3121 115 DEIPPKSKDDKGP---N-VLQLALRSRIKLFYRPAGLAG 149 (235)
T ss_pred eecCCCCcccCCc---c-eEEEEeeeeeeEEECcccCCC
Confidence 77766532 1010 0 013344788888888765443
No 46
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=45.47 E-value=1.9e+02 Score=24.45 Aligned_cols=103 Identities=11% Similarity=0.088 Sum_probs=59.1
Q ss_pred EeCCCCCeEEEEEEEEcCCCC-eEEEEEee---CC----ccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCC
Q 030093 6 FQDEAGKQVRSAIKIKNTSKS-HVAFKFQT---TA----PKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKS 77 (183)
Q Consensus 6 F~~~~~k~~~~~LtL~N~s~~-~VAFKVKT---Ta----P~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~ 77 (183)
+-|+.++. ...++|.|.++. +.. |++ +. ..-|.|-|+.--|+||+...|.|.. .. ...|.|..
T Consensus 34 vIy~~~~~-~~si~l~N~~~~~~~L--vQsWv~~~~~~~~~pfivtPPlfrl~p~~~q~lRIi~---~~--~~LP~DrE- 104 (229)
T PRK15195 34 VIYPADAK-QTSLAIRNSHTNERYL--VNSWIENSSGVKEKSFIVTPPLFVSEPKSENTLRIIY---AG--PPLAADRE- 104 (229)
T ss_pred EEEeCCCc-eEEEEEEeCCCCccEE--EEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEE---CC--CCCCCCee-
Confidence 44443333 389999999864 444 443 11 1249999999999999999999997 21 11233322
Q ss_pred CceEEEEEEEeCCCCCChhhhhhccCC-CcceEEEeEEEEeCCCC
Q 030093 78 RDKFKIISMKVKADVDYVPELFDEQKD-QTAAEQILRVVFLNPER 121 (183)
Q Consensus 78 kDKFlIqs~~v~~~~d~~~elwk~~~~-~~i~e~KLrV~f~~p~~ 121 (183)
--|.+....+|+..+... .+... ......+|++-|-+..-
T Consensus 105 -Slf~Lnv~eIP~~~~~~~---~~~n~l~iair~~iKlFyRP~~l 145 (229)
T PRK15195 105 -SLFWMNVKAIPSVDKNAL---EGRNVLQLAILSRIKLFVRPINL 145 (229)
T ss_pred -EEEEEEeeecCCCCcccc---cccceEEEEEEeEEEEEEccccc
Confidence 346666666665321100 01111 23346777877766543
No 47
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=43.88 E-value=87 Score=24.99 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=35.1
Q ss_pred CCeEEEEEEEEcCCCCeEE-EEEeeCC-ccceeec--CCceeeCCCCeEEEEEEe
Q 030093 11 GKQVRSAIKIKNTSKSHVA-FKFQTTA-PKSCFMR--PPGAILAPGESLIATVFK 61 (183)
Q Consensus 11 ~k~~~~~LtL~N~s~~~VA-FKVKTTa-P~~Y~Vr--P~~GiI~Pg~s~~I~V~l 61 (183)
.+.+.-.|+++|.|+..+. -+|.... +.--+|. |..+.|+||+++.+.+-.
T Consensus 84 ~~mvsIql~ftN~s~~~i~~I~i~~k~l~~g~~i~~F~~I~~L~pg~s~t~~lgI 138 (145)
T PF14796_consen 84 PSMVSIQLTFTNNSDEPIKNIHIGEKKLPAGMRIHEFPEIESLEPGASVTVSLGI 138 (145)
T ss_pred CCcEEEEEEEEecCCCeecceEECCCCCCCCcEeeccCcccccCCCCeEEEEEEE
Confidence 4678889999999987652 3333322 2233444 888899999998877664
No 48
>PF11538 Snurportin1: Snurportin1; InterPro: IPR024721 Snurportin-1 is a nuclear import receptor that contains an N-terminal importin beta binding domain which is essential for its function as an snRNP-specific nuclear import receptor []. Snurportin-1 interacts with m3G-cap where it enhances the m3G-cap dependent nuclear import of U snRNPs in Xenopus laevis oocytes and digitonin-permeabilized HeLa cells []. This entry represents the snurportin-1 N-terminal importin beta binding domain (IBB). The essential role of the IBB domain for snurportin-1 function suggests that snurportin-1 cooperates with importin beta in mediating nuclear import of snRNPs.; GO: 0005515 protein binding; PDB: 3LWW_D 3NC0_E 3NBZ_E 2Q5D_C 3NBY_B 3GB8_B 3GJX_B 2QNA_B 2P8Q_B.
Probab=43.24 E-value=18 Score=22.85 Aligned_cols=14 Identities=43% Similarity=0.786 Sum_probs=11.7
Q ss_pred hhhHhHHHHHHHhh
Q 030093 163 EWKERRERYLARQQ 176 (183)
Q Consensus 163 ~~~~~~~~~~~~~~ 176 (183)
+=.|||+++|.+|-
T Consensus 15 ~Q~eRR~~~Le~QK 28 (40)
T PF11538_consen 15 DQEERRREFLERQK 28 (40)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 45799999999885
No 49
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=43.17 E-value=56 Score=27.79 Aligned_cols=49 Identities=18% Similarity=0.290 Sum_probs=31.4
Q ss_pred CceEEeCCCCCeEEEEEEEEcCCCCeEEEEEeeCCccceeecCCceeeCCCCeEEEEE
Q 030093 2 SPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATV 59 (183)
Q Consensus 2 ~eL~F~~~~~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V 59 (183)
++|.|....+ .|++.|+|..+|.|---.-.-+. + ...+|+|.++..+.+
T Consensus 144 ~~L~~~~~~~-----~l~v~NpTPyyvtl~~l~~~~~~--~--~~~mi~P~s~~~~~~ 192 (233)
T PRK15246 144 KKLRFIAKEN-----TIRIVNPTSWYMSLTLTMDNKKS--I--GDIMVAPKTALDVPL 192 (233)
T ss_pred hccEEEEcCC-----EEEEECCCCcEEEEEeEEECCcc--c--CcceECCCCccEEEc
Confidence 4566763222 39999999999988632222222 2 246899999887753
No 50
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=42.44 E-value=2.1e+02 Score=24.08 Aligned_cols=98 Identities=14% Similarity=0.213 Sum_probs=56.4
Q ss_pred eEEEEEEEEcCCCC-eEEEEEee-C-Cc---cceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEEEEEE
Q 030093 13 QVRSAIKIKNTSKS-HVAFKFQT-T-AP---KSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISM 86 (183)
Q Consensus 13 ~~~~~LtL~N~s~~-~VAFKVKT-T-aP---~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKFlIqs~ 86 (183)
....+|+|.|.++. ++....-. . .. .-|.|-|+.--|+||+...|.|.. .. ...|.|. ---|.+...
T Consensus 36 ~~~~si~i~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRIi~---~~--~~lP~Dr--ESlf~lnv~ 108 (228)
T PRK15208 36 KKEASLTVNNKSKTEEFLIQSWIDDANGNKKTPFIITPPLFKLDPTKNNVLRIVN---IT--NTLPQDR--ESVYWINVK 108 (228)
T ss_pred CceEEEEEEeCCCCCcEEEEEEEECCCCCccCCEEECCCeEEECCCCccEEEEEE---CC--CCCCCCe--eEEEEEEEE
Confidence 45789999999863 44322211 1 11 129999999999999999999987 22 1123332 234666666
Q ss_pred EeCCCCCChhhhhhccCCCcceEEEeEEEEeCCC
Q 030093 87 KVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE 120 (183)
Q Consensus 87 ~v~~~~d~~~elwk~~~~~~i~e~KLrV~f~~p~ 120 (183)
.+|+..+... ++..=......+|++-|-|..
T Consensus 109 eIP~~~~~~~---~~n~l~ia~r~~IKlFyRP~~ 139 (228)
T PRK15208 109 AIPAKSEDAE---NKNVLQIAVRTRLKLFYRPAG 139 (228)
T ss_pred EcCCCCCCcc---ccceEEEEeeeeeeEEEchhh
Confidence 6665322110 010012334677777776544
No 51
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=42.30 E-value=1.1e+02 Score=20.96 Aligned_cols=45 Identities=9% Similarity=0.062 Sum_probs=22.5
Q ss_pred EEEEEcCCCCeEEE-----EEeeCCccce-eecCCceeeCCCCeEEEEEEe
Q 030093 17 AIKIKNTSKSHVAF-----KFQTTAPKSC-FMRPPGAILAPGESLIATVFK 61 (183)
Q Consensus 17 ~LtL~N~s~~~VAF-----KVKTTaP~~Y-~VrP~~GiI~Pg~s~~I~V~l 61 (183)
+|+++|++...+-| .|.-..-.-- ...+..+.++|+++..+.+.+
T Consensus 1 ~l~v~NPN~~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v 51 (101)
T PF03168_consen 1 TLSVRNPNSFGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPV 51 (101)
T ss_dssp EEEEEESSSS-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEE
T ss_pred CEEEECCCceeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEE
Confidence 57899998743333 2332221112 344555566666666555544
No 52
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=41.21 E-value=63 Score=27.24 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=28.5
Q ss_pred EEEEEcCCCCeEEEE-EeeCCccceeecCCceeeCCCCeEEEEEE
Q 030093 17 AIKIKNTSKSHVAFK-FQTTAPKSCFMRPPGAILAPGESLIATVF 60 (183)
Q Consensus 17 ~LtL~N~s~~~VAFK-VKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~ 60 (183)
.|+++|+|..+|.|- ++... +. +. +.|.|+|+++..+.+-
T Consensus 158 ~l~v~NptPyyitl~~l~~~~-~~--~~-~~~mI~P~s~~~~~~~ 198 (226)
T PRK15295 158 VITVNNPTPYYMNFASVTLNS-HE--VK-SATFVPPKSSASFKLG 198 (226)
T ss_pred EEEEECCCceEEEEEEEEECC-cc--cC-CCceECCCCccEEEcc
Confidence 499999999999765 54432 22 22 3589999999887643
No 53
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=40.93 E-value=65 Score=27.47 Aligned_cols=38 Identities=11% Similarity=0.176 Sum_probs=26.3
Q ss_pred EEEEcCCCCeEEEE-EeeCCccceeecCCceeeCCCCeEEEEE
Q 030093 18 IKIKNTSKSHVAFK-FQTTAPKSCFMRPPGAILAPGESLIATV 59 (183)
Q Consensus 18 LtL~N~s~~~VAFK-VKTTaP~~Y~VrP~~GiI~Pg~s~~I~V 59 (183)
|+++|+|..+|.|- ++-. -+. + ...++|+|.++..+.+
T Consensus 164 l~v~NpTPyyvtl~~l~v~-~~~--~-~~~~miaPfs~~~~~~ 202 (234)
T PRK15192 164 ATVRNPTPYYVTLFLLRAN-ERA--Q-DNAGVVAPFATRQTDW 202 (234)
T ss_pred EEEECCCCcEEEEEeEEEc-Ccc--c-CCCceECCCCccEEec
Confidence 99999999999875 2322 221 2 2346899999877764
No 54
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=39.50 E-value=81 Score=26.86 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=32.2
Q ss_pred ceEEeCCCCCeEEEEEEEEcCCCCeEEEE-EeeCC-ccceeecCCceeeCCCCeEEEEE
Q 030093 3 PIFFQDEAGKQVRSAIKIKNTSKSHVAFK-FQTTA-PKSCFMRPPGAILAPGESLIATV 59 (183)
Q Consensus 3 eL~F~~~~~k~~~~~LtL~N~s~~~VAFK-VKTTa-P~~Y~VrP~~GiI~Pg~s~~I~V 59 (183)
.|.|....+.. ...|+++|+|..++.|- ++-.. -+.+.+ ..+.|.|+++..+.+
T Consensus 161 ~L~~~~~~~~~-~~~L~v~Nptpy~itl~~l~~~~~g~~~~~--~~~mi~P~s~~~~~l 216 (246)
T PRK09926 161 ALKWSWAGSEG-KASLRVTNPTPYYVSFSSGDLEAGGKRYPV--DSKMIAPFSDESMKV 216 (246)
T ss_pred ccEEEEecCCC-eEEEEEECCCceEEEEEeeeeecCCeeccc--CcceECCCCcceEec
Confidence 45555432221 24599999999998765 33222 222222 347899999887764
No 55
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=38.63 E-value=3e+02 Score=25.67 Aligned_cols=55 Identities=16% Similarity=0.248 Sum_probs=38.4
Q ss_pred eCCCCC-eEEEEEEEEcCCCCeEEEEEeeCCccceeec-C-CceeeCCCCeEEEEEEe
Q 030093 7 QDEAGK-QVRSAIKIKNTSKSHVAFKFQTTAPKSCFMR-P-PGAILAPGESLIATVFK 61 (183)
Q Consensus 7 ~~~~~k-~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~Vr-P-~~GiI~Pg~s~~I~V~l 61 (183)
..+.+. ...-+++|.|.+..+..|.++........+. + +.=.|+||+...+.|++
T Consensus 340 ~~~~g~i~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~~g~~~~~~v~v 397 (434)
T TIGR02745 340 RNSDGVVENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVKAGEKVKLPVFL 397 (434)
T ss_pred ECCCCcEEEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEECCCCEEEEEEEE
Confidence 334443 6678999999999888888776544333332 2 23479999999888887
No 56
>smart00605 CW CW domain.
Probab=37.11 E-value=64 Score=22.96 Aligned_cols=15 Identities=47% Similarity=0.625 Sum_probs=10.9
Q ss_pred CCCeEEEEEeeCCcc
Q 030093 24 SKSHVAFKFQTTAPK 38 (183)
Q Consensus 24 s~~~VAFKVKTTaP~ 38 (183)
+...||||+.++.+.
T Consensus 66 ~~~~VAfK~~~~~~~ 80 (94)
T smart00605 66 SGKKVAFKVSTDQPS 80 (94)
T ss_pred CCcEEEEEEeCCCCC
Confidence 458899999865443
No 57
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=36.58 E-value=1.6e+02 Score=21.18 Aligned_cols=51 Identities=14% Similarity=0.251 Sum_probs=30.1
Q ss_pred CCeEEEEEEEEcCCCCe--EEEEEeeCCccceeecCC-----ceeeCCCCeEEEEEEe
Q 030093 11 GKQVRSAIKIKNTSKSH--VAFKFQTTAPKSCFMRPP-----GAILAPGESLIATVFK 61 (183)
Q Consensus 11 ~k~~~~~LtL~N~s~~~--VAFKVKTTaP~~Y~VrP~-----~GiI~Pg~s~~I~V~l 61 (183)
+......+.|+|.++.+ +.||+-==...-+-|.|. .=+|.++++..|.-+-
T Consensus 23 ~g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~~~~w~~~~l~~~~~~~l~~~a 80 (94)
T PF07233_consen 23 NGLLRAQATLSNKSSKPLTLQYRFYWYDKQGLEVDPEQSPWQSLTLPGGQTVTLSAVA 80 (94)
T ss_dssp CCEEEEEEEEEE-SSS-EEEEEEEEEE-TTS-EE--TT---EEEEE-TT-EEEEEEE-
T ss_pred CCeEEEEEEEEECCCCcEEEEEEEEEECCCCCCcCCCCCCCEEEEEcCCCEEEEEEEC
Confidence 67788999999999755 788876555566666666 2356777776666553
No 58
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=35.59 E-value=79 Score=26.75 Aligned_cols=42 Identities=12% Similarity=0.071 Sum_probs=30.5
Q ss_pred EEEEEEcCCCCeEEEE--EeeCCccceeecCCceeeCCCCeEEEEE
Q 030093 16 SAIKIKNTSKSHVAFK--FQTTAPKSCFMRPPGAILAPGESLIATV 59 (183)
Q Consensus 16 ~~LtL~N~s~~~VAFK--VKTTaP~~Y~VrP~~GiI~Pg~s~~I~V 59 (183)
..|+++|+|..++.|- .-+. .++-.. -+.+.|.|+++..+.+
T Consensus 165 ~~l~v~Nptpy~vtl~~~~l~~-~~~~~~-~~~~mv~P~s~~~~~l 208 (235)
T COG3121 165 NLLTVKNPTPYYVTLANLTLNV-GGRKLG-LNSGMVAPFSTRQFPL 208 (235)
T ss_pred CEEEEECCCCcEEEEEEEEEee-CceecC-CCcceECCCccceeec
Confidence 5899999999999887 3333 333332 6788999999887443
No 59
>PF11616 EZH2_WD-Binding: WD repeat binding protein EZH2; InterPro: IPR021654 This family of proteins represents Enhancer of zest homologue 2, (EZH2) a 30 residue peptide which binds to a WD-repeat domain of EED by residues 39-68. EED is a component of PRC2 complex which is involved in gene expression []. This interaction is required for the HMTase activity of PCR2 []. ; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 2QXV_B.
Probab=35.30 E-value=15 Score=21.87 Aligned_cols=10 Identities=40% Similarity=0.790 Sum_probs=5.2
Q ss_pred eechhhHhHH
Q 030093 160 VIDEWKERRE 169 (183)
Q Consensus 160 ~~~~~~~~~~ 169 (183)
.=+|||.||-
T Consensus 18 LN~eWk~lRi 27 (30)
T PF11616_consen 18 LNEEWKKLRI 27 (30)
T ss_dssp HHHHHHH---
T ss_pred HHHHHHHhcc
Confidence 3468999983
No 60
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=35.23 E-value=88 Score=26.76 Aligned_cols=48 Identities=8% Similarity=0.122 Sum_probs=31.0
Q ss_pred CceEEeCCCCCeEEEEEEEEcCCCCeEEEE-EeeCCccceeecCCceeeCCCCeEEEE
Q 030093 2 SPIFFQDEAGKQVRSAIKIKNTSKSHVAFK-FQTTAPKSCFMRPPGAILAPGESLIAT 58 (183)
Q Consensus 2 ~eL~F~~~~~k~~~~~LtL~N~s~~~VAFK-VKTTaP~~Y~VrP~~GiI~Pg~s~~I~ 58 (183)
++|.|.... ..|++.|+|..+|.|- ++.. -+. + .+.++|+|.++..+.
T Consensus 160 ~~L~~~~~g-----~~l~v~NpTPYyvtl~~l~~~-~~~--~-~~~~miaPfs~~~~~ 208 (237)
T PRK15224 160 GNLRWVETG-----NKLKVENPTPFYMNLASVTVG-GKP--I-TGLEYIPPFADKTLN 208 (237)
T ss_pred hccEEEEcC-----CEEEEECCCCcEEEeEeEEEC-Ccc--c-CCceeECCCCccEEE
Confidence 456676432 2499999999999874 3332 222 2 224679999887765
No 61
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=34.40 E-value=3e+02 Score=23.57 Aligned_cols=74 Identities=12% Similarity=0.201 Sum_probs=52.3
Q ss_pred CCeEEEEEEEEcCCCCeEEEEEee---CCc----c-----------ceeecCCceeeCCCCeEEEEEEeeccCCCCCCCC
Q 030093 11 GKQVRSAIKIKNTSKSHVAFKFQT---TAP----K-----------SCFMRPPGAILAPGESLIATVFKFVELPENNEKP 72 (183)
Q Consensus 11 ~k~~~~~LtL~N~s~~~VAFKVKT---TaP----~-----------~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p 72 (183)
+.+....++|+|.++.+..++|.. ++| + .-.+-|+.-+|.||++-.|.+..+ ++.
T Consensus 30 ~~~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L~pg~~q~IRli~l--g~~----- 102 (234)
T PRK15308 30 GREEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFALPAGTTRTVRVISL--QAP----- 102 (234)
T ss_pred CCcceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEECCCCeEEEEEEEc--CCC-----
Confidence 346678999999999888777642 343 1 257789999999999999998862 221
Q ss_pred CCCCCCceEEEEEEEeCCCCCC
Q 030093 73 MYQKSRDKFKIISMKVKADVDY 94 (183)
Q Consensus 73 ~~~~~kDKFlIqs~~v~~~~d~ 94 (183)
..-.-|.|...+++...+.
T Consensus 103 ---~kE~~YRl~~~pvp~~~~~ 121 (234)
T PRK15308 103 ---EREEAWRVYFEPVAELEDD 121 (234)
T ss_pred ---CcEEEEEEEEEecCCcccc
Confidence 1134688888888765433
No 62
>PHA01327 hypothetical protein
Probab=33.37 E-value=36 Score=21.98 Aligned_cols=14 Identities=43% Similarity=1.037 Sum_probs=11.3
Q ss_pred chhhHhHHHHHHHh
Q 030093 162 DEWKERRERYLARQ 175 (183)
Q Consensus 162 ~~~~~~~~~~~~~~ 175 (183)
++|.|||.+.-.|.
T Consensus 20 e~wqer~drmkkrh 33 (49)
T PHA01327 20 EEWQERKDRMKKRH 33 (49)
T ss_pred HHHHHHHHHHHHHH
Confidence 68999999887653
No 63
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=32.91 E-value=1.1e+02 Score=26.15 Aligned_cols=49 Identities=6% Similarity=0.180 Sum_probs=31.3
Q ss_pred CceEEeCCCCCeEEEEEEEEcCCCCeEEEE-EeeCCccceeecCCceeeCCCCeEEEEE
Q 030093 2 SPIFFQDEAGKQVRSAIKIKNTSKSHVAFK-FQTTAPKSCFMRPPGAILAPGESLIATV 59 (183)
Q Consensus 2 ~eL~F~~~~~k~~~~~LtL~N~s~~~VAFK-VKTTaP~~Y~VrP~~GiI~Pg~s~~I~V 59 (183)
.+|.|....+ .|++.|+|..+|.|- ++-. -+ .+ .+.++|+|.++..+.+
T Consensus 158 ~~L~~~~~g~-----~l~v~NpTPyyvtl~~l~~~-~~--~~-~~~~mi~Pfs~~~~~~ 207 (236)
T PRK11385 158 QQLRWTRNSQ-----GVQLTNPTPYYINLIQVSVN-GK--AL-SNAGVVPPKSQRQTSW 207 (236)
T ss_pred hheEEEEcCC-----EEEEECCCCcEEEEEeEEEC-Cc--cc-CCCceECCCCccEEec
Confidence 3566663222 499999999999764 3332 22 22 2356899999887764
No 64
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=32.45 E-value=3.2e+02 Score=23.36 Aligned_cols=95 Identities=14% Similarity=0.246 Sum_probs=58.8
Q ss_pred eEEEEEEEEcCCCCeEEEEEee---CC-----c----cceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCce
Q 030093 13 QVRSAIKIKNTSKSHVAFKFQT---TA-----P----KSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDK 80 (183)
Q Consensus 13 ~~~~~LtL~N~s~~~VAFKVKT---Ta-----P----~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDK 80 (183)
....+++|.|.++.+ |=|++ .. | .-|.|-|+.--|+|++...+.|.. .. ...|.|. ---
T Consensus 48 ~k~~sv~i~N~~~~p--yLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~---~~--~~LP~DR--ESl 118 (242)
T PRK15253 48 KKEVVVQLVNQGEQA--SLVQSWIDDGNTSLPPEKIQVPFMLTPPVARVAAESGQQIKIKK---MP--NSLPDNK--ESL 118 (242)
T ss_pred CceEEEEEEcCCCCc--EEEEEEEECCCCCCCcccccCCEEECCCeEEECCCCceEEEEEE---CC--CCCCcce--eEE
Confidence 456789999999876 44443 11 1 149999999999999999999997 22 1234432 235
Q ss_pred EEEEEEEeCCCCCChhhhhhccCC-CcceEEEeEEEEeCCC
Q 030093 81 FKIISMKVKADVDYVPELFDEQKD-QTAAEQILRVVFLNPE 120 (183)
Q Consensus 81 FlIqs~~v~~~~d~~~elwk~~~~-~~i~e~KLrV~f~~p~ 120 (183)
|-+....+|+..+. . +.... ......+|++-|-|..
T Consensus 119 fwlnv~~IPp~~~~-~---~~~n~l~iairtriKLFYRP~~ 155 (242)
T PRK15253 119 FYLNVLDIPPNSQE-N---AGKNVLKFAMQNRIKLIWRPSR 155 (242)
T ss_pred EEEEEEEcCCCCCC-c---CcCcEEEEEeeeEEEEEEcchh
Confidence 77777777763221 1 01111 2233677777776643
No 65
>PF13205 Big_5: Bacterial Ig-like domain
Probab=32.36 E-value=1.8e+02 Score=20.33 Aligned_cols=55 Identities=27% Similarity=0.371 Sum_probs=34.9
Q ss_pred eEEeCCCC-CeEEEEEEEEc--CCCCeEEEEEeeCCccceeecCCceeeCCCCeEEEEEEe
Q 030093 4 IFFQDEAG-KQVRSAIKIKN--TSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 61 (183)
Q Consensus 4 L~F~~~~~-k~~~~~LtL~N--~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l 61 (183)
|.|.-+.+ ......+.+.+ ....+|.+. ....+.+.+.|. +-|.+|....|+|.-
T Consensus 27 i~Fs~~v~~~s~~~~~~~~~~~~~~~~v~~~--~~~~~~~~i~p~-~~L~~~t~Y~v~i~~ 84 (107)
T PF13205_consen 27 ITFSEPVDPASVSSAITITDSNGSGVPVSFS--SWDGNTLTITPS-QPLKPGTTYTVTIDS 84 (107)
T ss_pred EEECCceecCccceEEEEEecCCCcEEEEEE--EccCCEEEEEEC-CcCCCCCEEEEEECC
Confidence 55655543 34555666654 334555555 333488889998 557889999998854
No 66
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=31.79 E-value=57 Score=27.10 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=22.4
Q ss_pred CeEEEEEeeCCccceeecCCceeeCCCCeEEEEEEee
Q 030093 26 SHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKF 62 (183)
Q Consensus 26 ~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~ 62 (183)
++|+||+ |...-|+||+++++++...
T Consensus 116 Hrvs~tl-----------p~wqslapG~s~~~~~~Yy 141 (180)
T PF06483_consen 116 HRVSFTL-----------PAWQSLAPGASVELDMVYY 141 (180)
T ss_pred EEEEEEC-----------CCccccCCCCEEEEeEEEE
Confidence 6777776 8888999999999998875
No 67
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=30.90 E-value=1.1e+02 Score=25.95 Aligned_cols=47 Identities=23% Similarity=0.349 Sum_probs=28.4
Q ss_pred CceEEeCCCCCeEEEEEEEEcCCCCeEEEEEeeCCccceeecCCceeeCCCCeEEE
Q 030093 2 SPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIA 57 (183)
Q Consensus 2 ~eL~F~~~~~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I 57 (183)
++|.|....+ .|+++|+|..+|.|-=-+-+-+. + ..++|+|.++..+
T Consensus 155 ~~L~~~~~~~-----~l~v~NpTPyyvtl~~l~v~~~~--~--~~~mi~P~s~~~~ 201 (228)
T PRK15188 155 STLRCRNERG-----QLTITNPSPYYVSMVELYSAGKK--L--PNTMVPPKGAITL 201 (228)
T ss_pred hceEEEEcCC-----EEEEECCCCcEEEEEEEEECCcc--c--CCceECCCCccee
Confidence 4566764322 49999999999987421112222 2 2367888888543
No 68
>PRK15290 lfpB fimbrial chaperone protein; Provisional
Probab=30.05 E-value=1.2e+02 Score=25.93 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=27.1
Q ss_pred EEEEEcCCCCeEEE-EEeeCCccceeecCCceeeCCCCeEEEEE
Q 030093 17 AIKIKNTSKSHVAF-KFQTTAPKSCFMRPPGAILAPGESLIATV 59 (183)
Q Consensus 17 ~LtL~N~s~~~VAF-KVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V 59 (183)
.|+++|+|..++.| .++-. -+ .+ ..+.|+|+++..+.+
T Consensus 177 ~l~v~NptPyyvtl~~l~v~-g~--~~--~~~mI~P~s~~~~~~ 215 (243)
T PRK15290 177 NLIAENPNPIHISVMDVIVD-GH--DV--PLNMIRPFETLTLPL 215 (243)
T ss_pred EEEEECCCcEEEEEEEEeec-Cc--cc--CCceECCCCceEEEc
Confidence 59999999999987 45432 22 22 246899999987753
No 69
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=29.90 E-value=1.3e+02 Score=25.41 Aligned_cols=50 Identities=20% Similarity=0.206 Sum_probs=31.6
Q ss_pred CceEEeCCCCCeEEEEEEEEcCCCCeEEEEEeeCCccceeecCCceeeCCCCeEEEEE
Q 030093 2 SPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATV 59 (183)
Q Consensus 2 ~eL~F~~~~~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V 59 (183)
++|.|.... ..|+++|+|..+|.|-=-.- .+. +....++|+|.++..+.+
T Consensus 150 ~~L~~~~~~-----~~l~v~NpTPyyitl~~l~~-~~~--~~~~~~mi~Pfs~~~~~~ 199 (226)
T PRK15218 150 SRLQLLRAP-----GSISVKNNSANWITIPEIKA-KSK--VNKETLLLAPWSSQSITT 199 (226)
T ss_pred hccEEEEcC-----CEEEEECCCCcEEEeEeeec-CCc--ccCCcceECCCCccEEEc
Confidence 456666322 24999999999998863221 222 222346899999877753
No 70
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=29.85 E-value=2e+02 Score=20.58 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=23.3
Q ss_pred EEEEEcCCCCeEEEEEeeCCccceeecCCceeeCCCCeEEEEEEe
Q 030093 17 AIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 61 (183)
Q Consensus 17 ~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l 61 (183)
.|+++|.++..-.|-+.. +.+ ...|.||++..++++-
T Consensus 46 ~l~~~N~~~~~h~~~i~~-----~~~---~~~l~~g~~~~~~f~~ 82 (104)
T PF13473_consen 46 TLTFTNNDSRPHEFVIPD-----LGI---SKVLPPGETATVTFTP 82 (104)
T ss_dssp EEEEEE-SSS-EEEEEGG-----GTE---EEEE-TT-EEEEEEEE
T ss_pred EEEEEECCCCcEEEEECC-----Cce---EEEECCCCEEEEEEcC
Confidence 488889987777777654 111 1579999999999854
No 71
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=29.73 E-value=1.3e+02 Score=25.85 Aligned_cols=49 Identities=10% Similarity=0.125 Sum_probs=31.7
Q ss_pred CceEEeCCCCCeEEEEEEEEcCCCCeEEEE-EeeCCccceeecCCceeeCCCCeEEEE
Q 030093 2 SPIFFQDEAGKQVRSAIKIKNTSKSHVAFK-FQTTAPKSCFMRPPGAILAPGESLIAT 58 (183)
Q Consensus 2 ~eL~F~~~~~k~~~~~LtL~N~s~~~VAFK-VKTTaP~~Y~VrP~~GiI~Pg~s~~I~ 58 (183)
++|.|... ...|+++|+|..++.|- ++-. -+ .+....++|+|.++..+.
T Consensus 165 ~~L~~~~~-----g~~l~v~NpTPyyvtl~~l~~~-~~--~~~~~~~mi~Pfs~~~~~ 214 (242)
T PRK15253 165 QRIGLFRS-----NKTVIMKNDTANWITVTDVKAG-NT--KINDQTIMLPPLSTQNIN 214 (242)
T ss_pred hceEEEEc-----CCEEEEECCCCcEEEeEeeEEC-Cc--ccCCCCceECCCCccEEe
Confidence 35666632 12499999999999885 3322 22 233345689999988765
No 72
>cd04094 selB_III This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=29.33 E-value=2.1e+02 Score=20.28 Aligned_cols=51 Identities=24% Similarity=0.223 Sum_probs=32.2
Q ss_pred CeEEEEEeeCCccceeec-CCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEEEEE
Q 030093 26 SHVAFKFQTTAPKSCFMR-PPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIIS 85 (183)
Q Consensus 26 ~~VAFKVKTTaP~~Y~Vr-P~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKFlIqs 85 (183)
.++-|=+-|.. -..+|. +....+.||++..+++.+- .| .-....|+|.|..
T Consensus 34 ~~v~~~~Gt~~-v~~ri~ll~~~~~~pg~~~~a~l~l~--~p------l~~~~gdrfilR~ 85 (97)
T cd04094 34 QRVHLHHGTSE-VLARVVLLDRDELAPGEEALAQLRLE--EP------LVALRGDRFILRS 85 (97)
T ss_pred CeEEEEeccce-EEEEEEeCCccccCCCCEEEEEEEEC--Cc------EeecCCCeEEEee
Confidence 55666665543 223333 3345788999999999981 22 2344579999964
No 73
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=28.09 E-value=1.5e+02 Score=24.99 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=27.7
Q ss_pred EEEEEcCCCCeEEEE-EeeCCccceeecCCceeeCCCCeEEEEE
Q 030093 17 AIKIKNTSKSHVAFK-FQTTAPKSCFMRPPGAILAPGESLIATV 59 (183)
Q Consensus 17 ~LtL~N~s~~~VAFK-VKTTaP~~Y~VrP~~GiI~Pg~s~~I~V 59 (183)
.|+++|+|..++.|- ++-. -+ .+. ..|.|.|+++..+.+
T Consensus 159 ~l~v~Nptpy~vtl~~l~~~-g~--~~~-~~~mi~P~s~~~~~l 198 (228)
T PRK15208 159 QIKVENPSAFNLTFNQFYAN-GR--DIE-KAGMVPAKGSLNIEL 198 (228)
T ss_pred EEEEECCCccEEEEEEEEEC-Cc--ccC-CCceECCCCccEEEc
Confidence 599999999999875 4432 22 222 358999999887764
No 74
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=27.49 E-value=1.7e+02 Score=23.66 Aligned_cols=48 Identities=27% Similarity=0.236 Sum_probs=36.9
Q ss_pred eEEEEEEEEcCCCCeEEEE-----------EeeCCccceeecCCcee-eCCCCeEEEEEEe
Q 030093 13 QVRSAIKIKNTSKSHVAFK-----------FQTTAPKSCFMRPPGAI-LAPGESLIATVFK 61 (183)
Q Consensus 13 ~~~~~LtL~N~s~~~VAFK-----------VKTTaP~~Y~VrP~~Gi-I~Pg~s~~I~V~l 61 (183)
..+-++-++|+.+..++|- +.|-+--.|..-+..|+ |.||+--. .|++
T Consensus 69 ~~t~t~yiKNtG~~~~~fd~~sitVliDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~-ev~v 128 (154)
T COG3354 69 PYTYTFYIKNTGSDSIAFDNTSITVLIDGNIVTPAYVTFTSVNGSSIRLSPGQVGR-EVTV 128 (154)
T ss_pred ceEEEEEEecCCCcccccCCCeEEEEEcCcEeccceEEEEecCCCeeEecCCceee-EEEe
Confidence 4467889999999999986 45556667888899999 99999774 4444
No 75
>PF09640 DUF2027: Domain of unknown function (DUF2027); InterPro: IPR018598 This protein domain is of unknown function. though putatively involved in DNA mismatch repair. It is associated with IPR002625 from INTERPRO. ; PDB: 2HUH_A.
Probab=26.85 E-value=90 Score=25.50 Aligned_cols=69 Identities=17% Similarity=0.240 Sum_probs=47.2
Q ss_pred eEEEEEEEEcCCCCeEEEEEeeCCccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEEEEEEEeCCCC
Q 030093 13 QVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADV 92 (183)
Q Consensus 13 ~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKFlIqs~~v~~~~ 92 (183)
..+-..-|-|-|...+.|-..+...+.|.+| +.|.|+|+..+-|.-.- ... ...-.+..||.+.-..+.
T Consensus 17 ~T~fE~YlVNDSNYy~~y~y~~~~g~~w~lr-s~G~iEPNtKl~ieef~---~~e-------LN~~~~v~vQ~iAyK~~K 85 (162)
T PF09640_consen 17 TTRFECYLVNDSNYYLHYTYLTAEGNSWTLR-SAGEIEPNTKLFIEEFS---KEE-------LNDLERVAVQLIAYKKDK 85 (162)
T ss_dssp T--EEEEEEE-SSSEEEEEEEEEETTEEEEE-EEEEE-TTEEEEEEEE----GGG-------GGG-SSEEEEEEEE-SSS
T ss_pred CCceEEEEEecCccEEEEEEEeccCCeEEEE-ecceECCCceeehhhcC---HHH-------hhccceeEEEEEEEcCCC
Confidence 3455678999999999999998888888888 78999999998886553 111 123457788888866654
No 76
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=26.80 E-value=1.4e+02 Score=24.97 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=26.9
Q ss_pred EEEEEcCCCCeEEEE-EeeCCccceeecCCceeeCCCCeEEEEE
Q 030093 17 AIKIKNTSKSHVAFK-FQTTAPKSCFMRPPGAILAPGESLIATV 59 (183)
Q Consensus 17 ~LtL~N~s~~~VAFK-VKTTaP~~Y~VrP~~GiI~Pg~s~~I~V 59 (183)
.|+++|+|..++.|- ++-... . + ...|.|.|+++..+.+
T Consensus 161 ~l~v~Nptpy~vtl~~l~~~~~-~--~-~~~~mv~P~s~~~~~l 200 (227)
T PRK15299 161 TLTVKNPTPYYMNFATLSVGSQ-K--V-KAPRYVAPFGNAQYTL 200 (227)
T ss_pred EEEEECCCccEEEEEeEEECCc-c--c-CCCceECCCCccEEEc
Confidence 599999999998764 333322 1 2 2357899999887764
No 77
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins.
Probab=26.37 E-value=2.2e+02 Score=24.22 Aligned_cols=51 Identities=31% Similarity=0.331 Sum_probs=35.0
Q ss_pred CCeEEEEEEEEcCCC---CeEEEEE--eeCCc-cceeecC---C---ceeeCCCCeEEEEEEe
Q 030093 11 GKQVRSAIKIKNTSK---SHVAFKF--QTTAP-KSCFMRP---P---GAILAPGESLIATVFK 61 (183)
Q Consensus 11 ~k~~~~~LtL~N~s~---~~VAFKV--KTTaP-~~Y~VrP---~---~GiI~Pg~s~~I~V~l 61 (183)
|..-+|.|-+.|.+. ..|.+|+ +|..- .+...-+ . .+-|+||++++..|..
T Consensus 13 GEtF~~~l~~~N~s~~~v~~v~ikvemqT~s~~~r~~L~~~~~~~~~~~~L~p~~~l~~iv~~ 75 (249)
T PF06159_consen 13 GETFSCYLSVNNDSNKPVRNVRIKVEMQTPSQSLRLPLSDNENSDSPVASLAPGESLDFIVSH 75 (249)
T ss_pred cCCEEEEEEeecCCCCceEEeEEEEEEeCCCCCccccCCCCccccccccccCCCCeEeEEEEE
Confidence 567899999999987 4568887 44433 1333322 2 3469999999877775
No 78
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=26.02 E-value=1.6e+02 Score=24.99 Aligned_cols=51 Identities=14% Similarity=0.051 Sum_probs=30.1
Q ss_pred CceEEeCCCCCeEEEEEEEEcCCCCeEEEE-EeeCCccceeecC----CceeeCCCCeEEEE
Q 030093 2 SPIFFQDEAGKQVRSAIKIKNTSKSHVAFK-FQTTAPKSCFMRP----PGAILAPGESLIAT 58 (183)
Q Consensus 2 ~eL~F~~~~~k~~~~~LtL~N~s~~~VAFK-VKTTaP~~Y~VrP----~~GiI~Pg~s~~I~ 58 (183)
..|.|... ...|++.|+|..++.|- ++-. .+...+.. ..++|+|.++..+.
T Consensus 149 ~~L~~~~~-----~~~l~v~NpTPyyitl~~l~v~-~~~~~~~~~~~~~~~mi~Pfs~~~~~ 204 (229)
T PRK15211 149 KNLQIIHR-----GGETYLKNPTPYYFAVTGVKLN-GQPVKLSDRVMNEIAQLAPFSEVSLG 204 (229)
T ss_pred hccEEEEe-----CCEEEEECCCCcEEEeEeEEEC-CeeccccccccccceeECCCCcceEe
Confidence 35666532 22499999999999874 3322 22221111 23578998887654
No 79
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=25.43 E-value=89 Score=23.53 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=20.1
Q ss_pred EEEEEEEEcCCCCeEEEEEeeCCccc
Q 030093 14 VRSAIKIKNTSKSHVAFKFQTTAPKS 39 (183)
Q Consensus 14 ~~~~LtL~N~s~~~VAFKVKTTaP~~ 39 (183)
-.-.|++.+-..+-+-||||.++|-+
T Consensus 19 ~hi~LKV~gqd~~~~~Fkikr~t~Lk 44 (99)
T KOG1769|consen 19 EHINLKVKGQDGSVVVFKIKRHTPLK 44 (99)
T ss_pred ceEEEEEecCCCCEEEEEeecCChHH
Confidence 45677777855678899999888865
No 80
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=24.90 E-value=1.7e+02 Score=24.56 Aligned_cols=42 Identities=24% Similarity=0.296 Sum_probs=27.9
Q ss_pred EEEEEcCCCCeEEEE-E-eeC-CccceeecCCceeeCCCCeEEEEEE
Q 030093 17 AIKIKNTSKSHVAFK-F-QTT-APKSCFMRPPGAILAPGESLIATVF 60 (183)
Q Consensus 17 ~LtL~N~s~~~VAFK-V-KTT-aP~~Y~VrP~~GiI~Pg~s~~I~V~ 60 (183)
.|+++|+|..++-|- + +.. .-+.+.+ ..|.|.|+++..+.+-
T Consensus 156 ~l~v~N~~p~~i~l~~l~~~~~~g~~~~~--~~~~v~P~s~~~~~l~ 200 (230)
T PRK09918 156 NLVVSNPSPYVVRLGQQVILLPSGKVVAL--PKPYILPGESLTVAIT 200 (230)
T ss_pred EEEEECCCCEEEEEeccEEEccCCceecc--CCceECCCceEEEEcc
Confidence 599999999888764 2 221 2233332 3489999999888643
No 81
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=24.45 E-value=2.1e+02 Score=21.73 Aligned_cols=51 Identities=20% Similarity=0.152 Sum_probs=31.3
Q ss_pred CCeEEEEEEEEcCCCCeEEE---EEe------------eCCccceeecC--CceeeCCCCeEEEEEEe
Q 030093 11 GKQVRSAIKIKNTSKSHVAF---KFQ------------TTAPKSCFMRP--PGAILAPGESLIATVFK 61 (183)
Q Consensus 11 ~k~~~~~LtL~N~s~~~VAF---KVK------------TTaP~~Y~VrP--~~GiI~Pg~s~~I~V~l 61 (183)
+....-..+|.|.++.+++| ++. +-.|.-|...+ +..-|.||+++.+.+.+
T Consensus 67 ~~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~ 134 (149)
T PF11906_consen 67 PGVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRL 134 (149)
T ss_pred CCEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEe
Confidence 44555566777777655544 111 12355555543 24459999999999998
No 82
>PRK15274 putative periplasmic fimbrial chaperone protein SteC; Provisional
Probab=23.36 E-value=2e+02 Score=24.90 Aligned_cols=41 Identities=10% Similarity=0.203 Sum_probs=26.2
Q ss_pred EEEEEcCCCCeEEEE-EeeCCccc-eeecCCceeeCCCCeEEEEE
Q 030093 17 AIKIKNTSKSHVAFK-FQTTAPKS-CFMRPPGAILAPGESLIATV 59 (183)
Q Consensus 17 ~LtL~N~s~~~VAFK-VKTTaP~~-Y~VrP~~GiI~Pg~s~~I~V 59 (183)
.|+++|+|..+|.|. ++-...+. ..+ ..++|+|.++..+.+
T Consensus 167 ~l~v~NpTPYyvtl~~i~~~~~~~~~~~--~~~mi~Pfs~~~~~l 209 (257)
T PRK15274 167 GVIFDNPTPFYLVISNAGSKENETASGF--KNLLIAPREKVTSPI 209 (257)
T ss_pred EEEEECCCCcEEEeeeeEeccCcccccC--CCceECCCCccEEec
Confidence 499999999999885 22211111 011 346899999877754
No 83
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=20.93 E-value=3.2e+02 Score=19.43 Aligned_cols=50 Identities=10% Similarity=0.084 Sum_probs=31.9
Q ss_pred CeEEEEEEEEcCCCCe-----EEEEEeeCCccceee-cCCceeeCCCCeEEEEEEe
Q 030093 12 KQVRSAIKIKNTSKSH-----VAFKFQTTAPKSCFM-RPPGAILAPGESLIATVFK 61 (183)
Q Consensus 12 k~~~~~LtL~N~s~~~-----VAFKVKTTaP~~Y~V-rP~~GiI~Pg~s~~I~V~l 61 (183)
....-.|+|+|++..+ +.|+|.-..-..=.. .+..|.|+++++..+.|.+
T Consensus 15 ~~~~l~l~v~NPN~~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~ 70 (100)
T smart00769 15 IEIVLKVKVQNPNPFPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPV 70 (100)
T ss_pred EEEEEEEEEECCCCCccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEE
Confidence 3566788899998744 455565532222222 2567888888887777666
No 84
>PF09478 CBM49: Carbohydrate binding domain CBM49; InterPro: IPR019028 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This domain is found at the C-terminal of cellulases and in vitro binding studies have shown it to binds to crystalline cellulose []. ; GO: 0030246 carbohydrate binding, 0005576 extracellular region
Probab=20.45 E-value=3e+02 Score=18.99 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=14.0
Q ss_pred EEEEEEEEcCCCCeE-EEEEee
Q 030093 14 VRSAIKIKNTSKSHV-AFKFQT 34 (183)
Q Consensus 14 ~~~~LtL~N~s~~~V-AFKVKT 34 (183)
..-.++|+|.+..+| -++|.+
T Consensus 19 ~qy~v~I~N~~~~~I~~~~i~~ 40 (80)
T PF09478_consen 19 TQYDVTITNNGSKPIKSLKISI 40 (80)
T ss_pred EEEEEEEEECCCCeEEEEEEEE
Confidence 446789999998666 344443
No 85
>PRK15254 fimbrial chaperone protein StdC; Provisional
Probab=20.18 E-value=2.3e+02 Score=24.24 Aligned_cols=42 Identities=14% Similarity=0.250 Sum_probs=27.1
Q ss_pred EEEEEcCCCCeEEEE-EeeCCccceeec--CCceeeCCCCeEEEEEE
Q 030093 17 AIKIKNTSKSHVAFK-FQTTAPKSCFMR--PPGAILAPGESLIATVF 60 (183)
Q Consensus 17 ~LtL~N~s~~~VAFK-VKTTaP~~Y~Vr--P~~GiI~Pg~s~~I~V~ 60 (183)
.|+++|+|..+|.|- ++-. ++-.+. ....+|+|.++..+.+.
T Consensus 155 ~l~v~NpTPYyitl~~l~~~--~~~~~~~~~~~~mi~Pfs~~~~~~~ 199 (239)
T PRK15254 155 HLTLRNPTPYYITVAWLGAD--RSHRLSGFREGVMVPPLGSLPLKAV 199 (239)
T ss_pred EEEEECCCceEEEeeeEEec--CcccccccCCCceECCCCceEEecc
Confidence 499999999999774 3322 111121 14468999998877653
Done!