Query 030093
Match_columns 183
No_of_seqs 146 out of 580
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 13:24:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030093.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030093hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cri_A Vesicle-associated memb 100.0 1.4E-34 4.8E-39 227.6 15.0 116 2-122 21-136 (147)
2 1z9l_A Vesicle-associated memb 100.0 4.9E-34 1.7E-38 219.2 15.9 111 2-117 17-127 (128)
3 1wic_A Hypothetical protein ri 100.0 2.5E-33 8.5E-38 222.1 12.3 117 2-126 25-146 (152)
4 1msp_A MSP, major sperm protei 100.0 1.1E-29 3.8E-34 195.3 14.4 110 2-117 15-125 (126)
5 1row_A SSP-19, MSP-domain prot 99.9 1.8E-27 6.1E-32 179.5 13.3 99 2-115 8-106 (109)
6 1m1s_A WR4; structural genomic 99.9 1E-26 3.5E-31 177.3 13.9 99 2-115 16-114 (116)
7 2ys4_A Hydrocephalus-inducing 98.1 1.5E-05 5.1E-10 59.4 9.5 65 11-85 40-104 (122)
8 3qbt_B Inositol polyphosphate 97.8 6.5E-05 2.2E-09 57.8 8.3 60 3-62 33-99 (140)
9 2e6j_A Hydin protein; PAPD, st 97.7 7.4E-05 2.5E-09 54.0 6.2 52 10-61 24-78 (112)
10 3qis_A Inositol polyphosphate 97.3 0.00073 2.5E-08 59.3 8.4 62 2-63 35-103 (366)
11 2qsv_A Uncharacterized protein 94.7 0.1 3.5E-06 42.1 7.6 58 3-61 9-67 (220)
12 2qsv_A Uncharacterized protein 94.6 0.14 4.8E-06 41.3 8.1 50 11-61 133-183 (220)
13 1yew_A Particulate methane mon 83.5 4.1 0.00014 36.1 8.1 54 9-62 261-335 (382)
14 3rfr_A PMOB; membrane, oxidore 83.4 3.5 0.00012 36.9 7.7 52 9-62 295-367 (419)
15 3q48_A Chaperone CUPB2; IG fol 82.1 20 0.00069 29.6 12.3 96 14-121 44-149 (257)
16 3zy7_A AP-1 complex subunit ga 81.7 13 0.00046 27.2 9.3 68 12-87 29-102 (122)
17 2r39_A FIXG-related protein; s 73.6 15 0.00052 26.3 7.5 49 13-61 32-81 (118)
18 3mnm_A ADP-ribosylation factor 70.7 29 0.00098 25.5 9.6 46 7-52 26-75 (123)
19 4ay0_A Chaperone protein CAF1M 70.5 31 0.0011 27.7 9.4 95 14-120 28-129 (218)
20 2xg5_A PAPD, chaperone protein 69.8 19 0.00065 28.9 7.9 96 14-120 16-119 (218)
21 3idu_A Uncharacterized protein 69.5 12 0.0004 27.9 6.1 51 10-61 31-82 (127)
22 2co7_B SAFB chaperone, putativ 68.7 19 0.00066 29.0 7.7 100 14-122 28-136 (221)
23 4djm_A DRAB; chaperone, PILI; 63.1 31 0.0011 28.2 8.0 71 14-91 38-113 (239)
24 1gyu_A Adapter-related protein 61.7 47 0.0016 24.9 8.2 43 12-54 47-93 (140)
25 1l4i_A SFAE protein; periplasm 53.4 81 0.0028 24.8 10.9 98 14-121 16-120 (206)
26 1klf_A FIMC chaperone, chapero 51.6 61 0.0021 25.6 7.7 97 14-121 16-120 (205)
27 3e38_A Two-domain protein cont 50.6 58 0.002 27.9 8.0 65 16-91 270-334 (343)
28 2g30_A AP-2 complex subunit be 49.0 41 0.0014 27.8 6.5 51 11-62 54-110 (258)
29 2e9g_A AP-1 complex subunit ga 44.5 33 0.0011 25.3 4.8 43 12-54 38-84 (131)
30 2xzz_A Protein-glutamine gamma 42.1 82 0.0028 22.2 6.4 47 11-61 19-71 (102)
31 3isy_A Bsupi, intracellular pr 42.0 1E+02 0.0034 22.7 7.4 25 10-34 16-40 (120)
32 1klf_A FIMC chaperone, chapero 41.6 53 0.0018 26.0 5.9 47 3-58 130-176 (205)
33 1iu1_A Gamma1-adaptin; coated 37.8 1.3E+02 0.0043 22.6 8.4 42 12-53 53-98 (146)
34 2huh_A Putative DNA mismatch r 37.4 45 0.0015 25.6 4.6 66 15-91 29-94 (147)
35 3hn9_A Lamin-B1; structural ge 36.6 49 0.0017 24.3 4.6 41 17-58 26-72 (123)
36 4ay0_A Chaperone protein CAF1M 35.8 37 0.0013 27.3 4.1 48 3-59 140-187 (218)
37 1c7s_A Beta-N-acetylhexosamini 35.3 60 0.002 31.6 6.1 49 13-61 39-109 (858)
38 1wm3_A Ubiquitin-like protein 35.1 37 0.0013 22.0 3.4 21 17-37 3-23 (72)
39 1yyc_A LEA protein, putative l 34.6 1.3E+02 0.0044 23.3 7.0 51 11-61 61-117 (174)
40 3vta_A Cucumisin; subtilisin-l 33.6 1.4E+02 0.0048 27.2 8.2 50 12-61 537-589 (621)
41 1xo8_A AT1G01470; structural g 31.9 85 0.0029 23.5 5.4 50 12-61 39-94 (151)
42 4djm_A DRAB; chaperone, PILI; 31.7 37 0.0013 27.7 3.5 38 17-58 171-209 (239)
43 3gfu_C Chaperone protein FAEE; 30.6 2.1E+02 0.0072 23.0 11.5 92 14-119 16-114 (224)
44 2co7_B SAFB chaperone, putativ 29.3 36 0.0012 27.3 3.0 39 17-59 154-193 (221)
45 2io0_B Small ubiquitin-related 29.2 52 0.0018 22.6 3.5 23 15-37 5-27 (91)
46 1l4i_A SFAE protein; periplasm 29.0 62 0.0021 25.6 4.3 47 3-58 130-176 (206)
47 2xg5_A PAPD, chaperone protein 28.2 59 0.002 26.0 4.1 42 17-58 140-182 (218)
48 3ndz_E Endoglucanase D; cellot 28.2 1.1E+02 0.0039 21.7 5.3 50 12-61 15-85 (107)
49 3q48_A Chaperone CUPB2; IG fol 27.3 39 0.0013 27.8 2.9 43 15-59 172-216 (257)
50 1ifr_A Lamin A/C; immunoglobul 27.2 71 0.0024 23.4 4.1 41 17-57 20-66 (121)
51 3i6s_A Subtilisin-like proteas 26.7 2.1E+02 0.0071 26.5 8.1 48 14-61 560-610 (649)
52 3o0l_A Uncharacterized protein 25.6 1.8E+02 0.0063 20.7 6.1 52 10-61 36-94 (112)
53 1p4u_A ADP-ribosylation factor 24.8 2.2E+02 0.0076 21.4 7.3 40 15-54 56-99 (153)
54 4gio_A Putative lipoprotein; u 24.5 1.7E+02 0.0059 20.8 5.7 51 11-61 35-91 (107)
55 3jt0_A Lamin-B1; structural ge 24.1 1.5E+02 0.005 22.4 5.5 42 17-58 39-85 (144)
56 2d07_B Ubiquitin-like protein 23.7 75 0.0026 21.7 3.5 24 14-37 16-39 (93)
57 1w8o_A Bacterial sialidase; 3D 23.4 89 0.0031 27.7 4.8 52 8-61 369-423 (601)
58 1kyf_A Alpha-adaptin C; protei 23.0 2.2E+02 0.0075 22.9 6.7 56 12-67 42-104 (247)
59 2lv4_A Putative outer membrane 22.9 62 0.0021 24.6 3.0 30 32-61 43-72 (146)
60 2l0d_A Cell surface protein; s 21.8 1.4E+02 0.0049 21.5 4.8 52 10-61 17-69 (114)
61 3kyd_D Small ubiquitin-related 20.9 88 0.003 22.8 3.5 25 14-38 39-63 (115)
62 2io1_B Small ubiquitin-related 20.8 1E+02 0.0036 21.1 3.8 24 14-37 6-29 (94)
63 2lll_A Lamin-B2; immunoglobuli 20.7 98 0.0033 23.3 3.8 42 17-58 35-82 (139)
No 1
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=100.00 E-value=1.4e-34 Score=227.59 Aligned_cols=116 Identities=27% Similarity=0.453 Sum_probs=106.6
Q ss_pred CceEEeCCCCCeEEEEEEEEcCCCCeEEEEEeeCCccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceE
Q 030093 2 SPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKF 81 (183)
Q Consensus 2 ~eL~F~~~~~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKF 81 (183)
++|.|.+++++.+++.|+|+|+|+.+||||||||+|++|+|||+.|+|.||+++.|.|+| ++.... ++++|+|||
T Consensus 21 ~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l---~~~~~~--p~~~~kDKF 95 (147)
T 2cri_A 21 SDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVML---QPFDYD--PNEKSKHKF 95 (147)
T ss_dssp SEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEE---CCCCCC--TTCCSCCCE
T ss_pred CeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEE---CCCcCC--ccccCCCEE
Confidence 589999999999999999999999999999999999999999999999999999999999 776443 357899999
Q ss_pred EEEEEEeCCCCCChhhhhhccCCCcceEEEeEEEEeCCCCC
Q 030093 82 KIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERP 122 (183)
Q Consensus 82 lIqs~~v~~~~d~~~elwk~~~~~~i~e~KLrV~f~~p~~p 122 (183)
+||++.++++.+++.++|++..+..++++||||+|+.|..+
T Consensus 96 lVqs~~~~~~~~d~~~~wk~~~~~~i~e~kLrv~f~~p~~~ 136 (147)
T 2cri_A 96 MVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFEMPNEN 136 (147)
T ss_dssp EEEEEECCTTCCCHHHHHHHSCTTTCEEEEEEEEEECSCCS
T ss_pred EEEEEEcCCCcccHHHHhhcCCCCceEEEEEEEEEecCCCC
Confidence 99999999887778999999988899999999999876543
No 2
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=100.00 E-value=4.9e-34 Score=219.16 Aligned_cols=111 Identities=26% Similarity=0.453 Sum_probs=103.3
Q ss_pred CceEEeCCCCCeEEEEEEEEcCCCCeEEEEEeeCCccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceE
Q 030093 2 SPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKF 81 (183)
Q Consensus 2 ~eL~F~~~~~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKF 81 (183)
++|.|.+++++++++.|+|+|+|+.+||||||||+|++|+|||+.|+|+||+++.|.|++ ++.... ++.+|+|||
T Consensus 17 ~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~---~~~~~~--p~~~~~dkF 91 (128)
T 1z9l_A 17 SDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVML---QPFDYD--PNEKSKHKF 91 (128)
T ss_dssp SEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEE---CCCCCC--TTCCCCCEE
T ss_pred CeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEE---CcCcCC--cccccCCEE
Confidence 589999999999999999999999999999999999999999999999999999999999 776443 346899999
Q ss_pred EEEEEEeCCCCCChhhhhhccCCCcceEEEeEEEEe
Q 030093 82 KIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFL 117 (183)
Q Consensus 82 lIqs~~v~~~~d~~~elwk~~~~~~i~e~KLrV~f~ 117 (183)
+||++.++++.+++.++|++..+..++++||||+|.
T Consensus 92 ~V~s~~~~~~~~~~~~~w~~~~~~~i~e~kLrv~f~ 127 (128)
T 1z9l_A 92 MVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFE 127 (128)
T ss_dssp EEEEEECCTTCSCHHHHHHSCCGGGCEEEEEEEEEE
T ss_pred EEEEEECCCCcchHHHHhhcCCCCceEEEEEEEEEe
Confidence 999999999887789999999888999999999995
No 3
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=100.00 E-value=2.5e-33 Score=222.09 Aligned_cols=117 Identities=21% Similarity=0.338 Sum_probs=104.6
Q ss_pred CceEEeCCCCCeEEEEEEEEcCCCCeEEEEEeeCCccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceE
Q 030093 2 SPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKF 81 (183)
Q Consensus 2 ~eL~F~~~~~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKF 81 (183)
++|.|.+++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|.||++++|.|+| ++... ..++|||
T Consensus 25 ~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~l---q~~~~-----~~~kDKF 96 (152)
T 1wic_A 25 EELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSP---HGGLT-----VSAQDRF 96 (152)
T ss_dssp SCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEE---CSSSC-----CCSSCCE
T ss_pred CeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEe---cCccc-----CCCCCEE
Confidence 489999999999999999999999999999999999999999999999999999999999 67532 3789999
Q ss_pred EEEEEEeC--CCC--CChhhhhhccCCCcceEEEeEEEEeCC-CCCCchH
Q 030093 82 KIISMKVK--ADV--DYVPELFDEQKDQTAAEQILRVVFLNP-ERPEPAL 126 (183)
Q Consensus 82 lIqs~~v~--~~~--d~~~elwk~~~~~~i~e~KLrV~f~~p-~~ps~~~ 126 (183)
+||++.++ ++. +++.++|++..+..++++||+|+|+++ +|+|+++
T Consensus 97 lVqs~~v~~~~~~~~~d~~~~wk~~~~~~i~e~kLrv~f~~~~~p~s~~~ 146 (152)
T 1wic_A 97 LIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRCHTVESSKPNSLML 146 (152)
T ss_dssp EEEEEECCSSCCCSHHHHHHHHHHSCTTTCEEEEECBCCCCSCSSSSSCC
T ss_pred EEEEEEcCCcCCCChhhHHHHHhccCCCceEEEEEEEEECCCCCCCCccc
Confidence 99999998 443 357899999988899999999999975 5566565
No 4
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=99.97 E-value=1.1e-29 Score=195.26 Aligned_cols=110 Identities=16% Similarity=0.197 Sum_probs=95.3
Q ss_pred CceEEeCCCCCeEEEEEEEEcCCCCeEEEEEeeCCccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceE
Q 030093 2 SPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKF 81 (183)
Q Consensus 2 ~eL~F~~~~~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKF 81 (183)
++|.|.+++++++++.|+|+|+|+.+||||||||+|++|+|||++|+|.||+++.|.|+| +++...+ . ...+|||
T Consensus 15 ~~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~---q~~~~~~-~-~~~kDKf 89 (126)
T 1msp_A 15 QKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSC---DTFNAAT-E-DLNNDRI 89 (126)
T ss_dssp SCEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEE---CCCCGGG-S-CCSSCEE
T ss_pred CeEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEe---cCCCCCC-C-ccCCCEE
Confidence 589999999999999999999999999999999999999999999999999999999999 7865543 2 2459999
Q ss_pred EEEEEEeCCCCC-ChhhhhhccCCCcceEEEeEEEEe
Q 030093 82 KIISMKVKADVD-YVPELFDEQKDQTAAEQILRVVFL 117 (183)
Q Consensus 82 lIqs~~v~~~~d-~~~elwk~~~~~~i~e~KLrV~f~ 117 (183)
+||++.++++.+ .+...|....+ .+..++|+|.|.
T Consensus 90 ~Vq~~~~p~~~~~~~~~~wf~~d~-~~~~k~L~V~Yn 125 (126)
T 1msp_A 90 TIEWTNTPDGAAKQFRREWFQGDG-MVRRKNLPIEYN 125 (126)
T ss_dssp EEEEEECCTTCCSSCCTHHHHSSS-CCEEEEEEEEEE
T ss_pred EEEEEECCCCcchhhhHHhhcCCC-ceEEEEEEEEec
Confidence 999999998863 34555555444 578999999996
No 5
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.95 E-value=1.8e-27 Score=179.45 Aligned_cols=99 Identities=14% Similarity=0.154 Sum_probs=87.0
Q ss_pred CceEEeCCCCCeEEEEEEEEcCCCCeEEEEEeeCCccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceE
Q 030093 2 SPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKF 81 (183)
Q Consensus 2 ~eL~F~~~~~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKF 81 (183)
.+|.|+++. .++.|+|+|+|+.+||||||||+|++|||||+.|+|+||++++|.|++ |++ ..++|||
T Consensus 8 ~~l~F~~~~---~~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~---q~~-------~~~~dKf 74 (109)
T 1row_A 8 PACTVPAAG---VSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITR---TAG-------APKEDKL 74 (109)
T ss_dssp SSEEEETTC---EEEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEE---CSC-------CCEEEEE
T ss_pred CEeEEeCCC---CeEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEe---CCC-------CCCCCEE
Confidence 469999884 369999999999999999999999999999999999999999999999 663 2469999
Q ss_pred EEEEEEeCCCCCChhhhhhccCCCcceEEEeEEE
Q 030093 82 KIISMKVKADVDYVPELFDEQKDQTAAEQILRVV 115 (183)
Q Consensus 82 lIqs~~v~~~~d~~~elwk~~~~~~i~e~KLrV~ 115 (183)
+||++.++++..+..++|++.... ++.+|++.
T Consensus 75 lvq~~~~~~~~~d~~~~fk~~~~~--g~~~i~l~ 106 (109)
T 1row_A 75 VVHFASAPADATDAQAAFVAVAPA--GTVTIPMS 106 (109)
T ss_dssp EEEEEECCTTCSCHHHHHTTCCCC--EEEEEEEE
T ss_pred EEEEEECCCCCCCHHHHhhcCCCC--ceEEEEEE
Confidence 999999998877789999997653 66777765
No 6
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.94 E-value=1e-26 Score=177.27 Aligned_cols=99 Identities=20% Similarity=0.251 Sum_probs=87.2
Q ss_pred CceEEeCCCCCeEEEEEEEEcCCCCeEEEEEeeCCccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceE
Q 030093 2 SPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKF 81 (183)
Q Consensus 2 ~eL~F~~~~~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKF 81 (183)
.+|.|+++- .++.|+|+|+|+.+||||||||+|+.|||||+.|+|+||++++|.|++ +++ + .++|||
T Consensus 16 ~~l~F~~~g---g~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~---q~~----~---~k~DKf 82 (116)
T 1m1s_A 16 PTGNYPATG---GNSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINR---LPG----P---PKEDKI 82 (116)
T ss_dssp SEEEECTTC---EEEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEE---CSC----C---SCEEEE
T ss_pred CeEEEecCC---CEEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEe---CCC----C---CCCCEE
Confidence 468888763 489999999999999999999999999999999999999999999999 664 1 469999
Q ss_pred EEEEEEeCCCCCChhhhhhccCCCcceEEEeEEE
Q 030093 82 KIISMKVKADVDYVPELFDEQKDQTAAEQILRVV 115 (183)
Q Consensus 82 lIqs~~v~~~~d~~~elwk~~~~~~i~e~KLrV~ 115 (183)
+||++.++++..++.++|++... ..+.+|++.
T Consensus 83 lVq~~~~~~d~~d~~~~fk~~~~--~g~~~i~l~ 114 (116)
T 1m1s_A 83 VIQYAEVPAEETDPMAPFKAGAQ--QGEIIVKLI 114 (116)
T ss_dssp EEEEEEECTTCCCTTHHHHTTCC--CEEEEEEEE
T ss_pred EEEEEECCCCCCCHHHHHhcCCC--CceEEEEEE
Confidence 99999999877778999999765 478888775
No 7
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.14 E-value=1.5e-05 Score=59.36 Aligned_cols=65 Identities=15% Similarity=0.234 Sum_probs=53.0
Q ss_pred CCeEEEEEEEEcCCCCeEEEEEeeCCccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEEEEE
Q 030093 11 GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIIS 85 (183)
Q Consensus 11 ~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKFlIqs 85 (183)
+...+..|.|+|.++.++.|++++. .-|.|.|+.|.|.||+++.|.|+. .|... ......+.|..
T Consensus 40 ~~~~~~~~~l~N~g~~~~~f~~~~~--~~F~i~P~~g~L~pg~~~~i~V~F---~P~~~-----g~~~~~l~v~~ 104 (122)
T 2ys4_A 40 KYSTQKILLVRNIGNKNAVFHIKTC--RPFSIEPAIGTLNVGESMQLEVEF---EPQSV-----GDHSGRLIVCY 104 (122)
T ss_dssp SSCEEEEEEEECCSSSCEEEEEECC--TTEEEESSEEEECTTCEEEEEEEE---CCSSS-----BCCCCBCEEEE
T ss_pred CCeEEEEEEEEECCCCCEEEEEecC--CCeEEECCcCEECCCCEEEEEEEE---EcCCC-----ccEEEEEEEEE
Confidence 5788899999999999999999975 469999999999999999999998 66422 23445555543
No 8
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=97.84 E-value=6.5e-05 Score=57.82 Aligned_cols=60 Identities=15% Similarity=0.212 Sum_probs=49.9
Q ss_pred ceEEe-CCCCCeEEEEEEEEcCCCCeEEEEEeeC------CccceeecCCceeeCCCCeEEEEEEee
Q 030093 3 PIFFQ-DEAGKQVRSAIKIKNTSKSHVAFKFQTT------APKSCFMRPPGAILAPGESLIATVFKF 62 (183)
Q Consensus 3 eL~F~-~~~~k~~~~~LtL~N~s~~~VAFKVKTT------aP~~Y~VrP~~GiI~Pg~s~~I~V~l~ 62 (183)
+|.|- ..+++..+..|+|+|++.-+.-|++... .+.-+.|.|+.|.|.||+++.|.|+++
T Consensus 33 ~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~ 99 (140)
T 3qbt_B 33 EFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVY 99 (140)
T ss_dssp EEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEEC
T ss_pred eEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEE
Confidence 45555 3467888999999999999999999742 234578999999999999999999985
No 9
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.70 E-value=7.4e-05 Score=54.01 Aligned_cols=52 Identities=12% Similarity=0.163 Sum_probs=45.3
Q ss_pred CCCeEEEEEEEEcCCCCeEEEEEeeCC-c--cceeecCCceeeCCCCeEEEEEEe
Q 030093 10 AGKQVRSAIKIKNTSKSHVAFKFQTTA-P--KSCFMRPPGAILAPGESLIATVFK 61 (183)
Q Consensus 10 ~~k~~~~~LtL~N~s~~~VAFKVKTTa-P--~~Y~VrP~~GiI~Pg~s~~I~V~l 61 (183)
.+...+..++|+|+++.++.|++.... + .-|.+.|+.|.|.||++..|.|++
T Consensus 24 ~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f 78 (112)
T 2e6j_A 24 TGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISF 78 (112)
T ss_dssp SSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEE
T ss_pred ECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEE
Confidence 467788999999999999999996421 1 459999999999999999999999
No 10
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=97.30 E-value=0.00073 Score=59.32 Aligned_cols=62 Identities=16% Similarity=0.236 Sum_probs=50.6
Q ss_pred CceEEe-CCCCCeEEEEEEEEcCCCCeEEEEEeeCCcc-c-----eeecCCceeeCCCCeEEEEEEeec
Q 030093 2 SPIFFQ-DEAGKQVRSAIKIKNTSKSHVAFKFQTTAPK-S-----CFMRPPGAILAPGESLIATVFKFV 63 (183)
Q Consensus 2 ~eL~F~-~~~~k~~~~~LtL~N~s~~~VAFKVKTTaP~-~-----Y~VrP~~GiI~Pg~s~~I~V~l~~ 63 (183)
++|.|- ..++...+.+|+|+|++.-++.|.+.....+ . +.|.|+.|.|.||+++.|.|++++
T Consensus 35 ~~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v 103 (366)
T 3qis_A 35 REFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV 103 (366)
T ss_dssp SEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred CeEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEE
Confidence 345663 4578899999999999999999999754222 2 569999999999999999999954
No 11
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=94.69 E-value=0.1 Score=42.12 Aligned_cols=58 Identities=12% Similarity=0.087 Sum_probs=48.0
Q ss_pred ceEEeCC-CCCeEEEEEEEEcCCCCeEEEEEeeCCccceeecCCceeeCCCCeEEEEEEe
Q 030093 3 PIFFQDE-AGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 61 (183)
Q Consensus 3 eL~F~~~-~~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l 61 (183)
.|.|.-- .+......++++|+++.++-++.-.. |..+..++..+.|+||++..|.|++
T Consensus 9 ~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt~ 67 (220)
T 2qsv_A 9 RLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLSL 67 (220)
T ss_dssp EEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEEE
T ss_pred eeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEEE
Confidence 4445432 45677789999999999999997544 8888889999999999999999999
No 12
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=94.55 E-value=0.14 Score=41.30 Aligned_cols=50 Identities=20% Similarity=0.331 Sum_probs=44.7
Q ss_pred CCeEEEEEEEEcCCCCeEEE-EEeeCCccceeecCCceeeCCCCeEEEEEEe
Q 030093 11 GKQVRSAIKIKNTSKSHVAF-KFQTTAPKSCFMRPPGAILAPGESLIATVFK 61 (183)
Q Consensus 11 ~k~~~~~LtL~N~s~~~VAF-KVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l 61 (183)
+...+..++|+|.++.++.+ +|+|+. +-..+.++.+.|+||++..|.|++
T Consensus 133 g~~~~~~f~i~N~G~~pL~I~~v~~sc-gct~~~~~~~~i~PGe~~~i~v~~ 183 (220)
T 2qsv_A 133 GETTKAAIEIRNVGAGPLRLHSVTTRN-PALTAVPDRTEIKPGGSTLLRIAV 183 (220)
T ss_dssp TSCEEEEEEEEECSSSCEEEEEEEECS-TTEEEEESCSEECTTCEEEEEEEE
T ss_pred CCeEEEEEEEEECCCCCEEEEEEEeCC-CCEeeecCCccCCCCCEEEEEEEE
Confidence 78889999999999999987 888764 677788889999999999999998
No 13
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=83.51 E-value=4.1 Score=36.07 Aligned_cols=54 Identities=26% Similarity=0.288 Sum_probs=41.3
Q ss_pred CCCCeEEEEEEEEcCCCCeEEEEEeeCCccceee---------cC------------CceeeCCCCeEEEEEEee
Q 030093 9 EAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFM---------RP------------PGAILAPGESLIATVFKF 62 (183)
Q Consensus 9 ~~~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~V---------rP------------~~GiI~Pg~s~~I~V~l~ 62 (183)
.+++..+-+++++|.++++|-..==+|+.-+|.- -| +..-|+||++.++.|..+
T Consensus 261 vpgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~~pI~PGETr~~~v~a~ 335 (382)
T 1yew_A 261 VPGRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSPLAPGETRTVDVTAS 335 (382)
T ss_dssp SSCSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCSCBCTTCEEEEEEEEE
T ss_pred cCCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCCCCcCCCceeEEEEEee
Confidence 4789999999999999999988755666655522 12 122389999999999984
No 14
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=83.40 E-value=3.5 Score=36.87 Aligned_cols=52 Identities=25% Similarity=0.294 Sum_probs=40.7
Q ss_pred CCCCeEEEEEEEEcCCCCeEEEEEeeCCcccee--------------------e-cCCceeeCCCCeEEEEEEee
Q 030093 9 EAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCF--------------------M-RPPGAILAPGESLIATVFKF 62 (183)
Q Consensus 9 ~~~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~--------------------V-rP~~GiI~Pg~s~~I~V~l~ 62 (183)
.+++..+-+++++|.++++|-+.==+|+.-+|. + .|+ -|+||++.+++|..+
T Consensus 295 vpgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~--pI~PGETrt~~V~a~ 367 (419)
T 3rfr_A 295 VPGRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDD--VIAPGESKEIVVKIQ 367 (419)
T ss_dssp SSSSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCC--CBCTTCEEEEEEEEE
T ss_pred cCCcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCC--CcCCCcceEEEEEee
Confidence 468899999999999999998874455555543 1 233 599999999999984
No 15
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=82.10 E-value=20 Score=29.60 Aligned_cols=96 Identities=14% Similarity=0.158 Sum_probs=60.8
Q ss_pred EEEEEEEEcCCCCeEEEEEeeCC------c----cceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEEE
Q 030093 14 VRSAIKIKNTSKSHVAFKFQTTA------P----KSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKI 83 (183)
Q Consensus 14 ~~~~LtL~N~s~~~VAFKVKTTa------P----~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKFlI 83 (183)
...+|+|+|.++.++.--+-... | .-|.|-|+.-.|+||+...|.|.. ... ..|.|.. --|.+
T Consensus 44 k~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~---~~~--~LP~DrE--Slf~l 116 (257)
T 3q48_A 44 REVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAY---LKA--PLPTDRE--SLFWL 116 (257)
T ss_dssp SEEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEE---CCC--CCCSSSC--EEEEE
T ss_pred cEEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEE---CCC--CCCCCce--eEEEE
Confidence 35899999999887765543211 1 139999999999999999999987 221 1244433 35777
Q ss_pred EEEEeCCCCCChhhhhhccCCCcceEEEeEEEEeCCCC
Q 030093 84 ISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPER 121 (183)
Q Consensus 84 qs~~v~~~~d~~~elwk~~~~~~i~e~KLrV~f~~p~~ 121 (183)
....+++..+. ....=+.....+|++-|-+..-
T Consensus 117 nv~eIPp~~~~-----~~n~Lqiair~rIKLFyRP~~L 149 (257)
T 3q48_A 117 NILEVPPRDED-----ENNALQFSFRSRFKLFFRPSQL 149 (257)
T ss_dssp EEEEECCC--------------CCEEEEEEEEEECTTC
T ss_pred EeeecCCCCCC-----CCceEEEEEEEEEEEEEecccC
Confidence 77777664322 1111133457889998887543
No 16
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=81.67 E-value=13 Score=27.22 Aligned_cols=68 Identities=18% Similarity=0.285 Sum_probs=45.4
Q ss_pred CeEEEEEEEEcCCCCeE-EEEEeeCCccceeec--CCce-eeCC--CCeEEEEEEeeccCCCCCCCCCCCCCCceEEEEE
Q 030093 12 KQVRSAIKIKNTSKSHV-AFKFQTTAPKSCFMR--PPGA-ILAP--GESLIATVFKFVELPENNEKPMYQKSRDKFKIIS 85 (183)
Q Consensus 12 k~~~~~LtL~N~s~~~V-AFKVKTTaP~~Y~Vr--P~~G-iI~P--g~s~~I~V~l~~~~p~~~e~p~~~~~kDKFlIqs 85 (183)
....-.++.+|.+..+| -|.++.-.|+.|.++ |.+| .|.| +..++=.+.+ ..+. ....+=|+.|.+
T Consensus 29 ~~~~i~~~~~N~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~l~p~~~~~itQ~l~i--~n~~------~~~lklR~klsY 100 (122)
T 3zy7_A 29 SVTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKV--LNPQ------KQQLRMRIKLTF 100 (122)
T ss_dssp CEEEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGSCCEEEEEEE--ECTT------CCCCCEEEEEEE
T ss_pred CeEEEEEEEEECCCCccccEEEEEEcCcccEEEecCCCCCccCCCCCCCEEEEEEE--ECCC------CCCEEEEEEEEE
Confidence 34677888899987666 899999999998766 7777 6888 6555444443 2342 123455666665
Q ss_pred EE
Q 030093 86 MK 87 (183)
Q Consensus 86 ~~ 87 (183)
..
T Consensus 101 ~~ 102 (122)
T 3zy7_A 101 NW 102 (122)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 17
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=73.64 E-value=15 Score=26.29 Aligned_cols=49 Identities=12% Similarity=0.158 Sum_probs=37.4
Q ss_pred eEEEEEEEEcCCCCeEEEEEeeCCccceee-cCCceeeCCCCeEEEEEEe
Q 030093 13 QVRSAIKIKNTSKSHVAFKFQTTAPKSCFM-RPPGAILAPGESLIATVFK 61 (183)
Q Consensus 13 ~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~V-rP~~GiI~Pg~s~~I~V~l 61 (183)
+..-+|+|.|.+..+..|.+.......+.+ .|..=.|+||+...+.|.+
T Consensus 32 ~N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g~~~i~v~~g~~~~~~v~v 81 (118)
T 2r39_A 32 ENTYTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGEVLNLPMSL 81 (118)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEESCSSCEEESCCEEEECTTCEEEEEEEE
T ss_pred EEEEEEEEEECCCCCEEEEEEEeCCcccEEeCCCcEEECCCCEEEEEEEE
Confidence 566899999999988999888766444554 3554478899988877776
No 18
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae}
Probab=70.65 E-value=29 Score=25.48 Aligned_cols=46 Identities=22% Similarity=0.301 Sum_probs=35.5
Q ss_pred eCCCCCeEEEEEEEEcCCCCeE-EEEEeeCCccceeec--CCce-eeCCC
Q 030093 7 QDEAGKQVRSAIKIKNTSKSHV-AFKFQTTAPKSCFMR--PPGA-ILAPG 52 (183)
Q Consensus 7 ~~~~~k~~~~~LtL~N~s~~~V-AFKVKTTaP~~Y~Vr--P~~G-iI~Pg 52 (183)
.........-.++.+|.+..+| -|.++.-.|+.|.++ |.+| .|.|+
T Consensus 26 ~~~~~~~~~i~~~fsN~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~L~p~ 75 (123)
T 3mnm_A 26 SRESNSVIRIXSFFTNLSSSPISNLVFLLAVPKSMSLXLQPQSSNFMIGN 75 (123)
T ss_dssp EECSSSCEEEEEEEEECSSSCEEEEEEEEECCTTSEEEECCCSCSCBCTT
T ss_pred EeCCCCeEEEEEEEecCCCCccccEEEEEecCcccEEEeECCCcCccCCC
Confidence 3334445677888899987766 899999999998766 7777 69998
No 19
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=70.55 E-value=31 Score=27.75 Aligned_cols=95 Identities=12% Similarity=0.054 Sum_probs=56.8
Q ss_pred EEEEEEEEcCCCCeEEEEEee-------CCccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEEEEEE
Q 030093 14 VRSAIKIKNTSKSHVAFKFQT-------TAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISM 86 (183)
Q Consensus 14 ~~~~LtL~N~s~~~VAFKVKT-------TaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKFlIqs~ 86 (183)
-..+|+|+|.++.++.--... +...-|.|-|+.--|+||+...|.|.. ... ..|.|. ---|.+...
T Consensus 28 k~~sl~l~N~~~~p~LvQswv~~~~~~~~~~~pFivtPPl~Rl~p~~~q~lRI~~---~~~--~LP~DR--ESlf~lnv~ 100 (218)
T 4ay0_A 28 AGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQ---AGG--VFPRDK--ESLKWLCVK 100 (218)
T ss_dssp SCEEEEEECCSSSCEEEEEEEECTTSCCCSSCSEEEESSEEEECTTCEEEEEEEE---CSC--CCCSSS--CEEEEEEEE
T ss_pred cEEEEEEEcCCCCCEEEEEEEecCCCCccccCCEEECCCeEEeCCCCceEEEEEe---cCC--CCCcCc--EEEEEEEEE
Confidence 357899999998886555332 111239999999999999999999987 221 124432 234777777
Q ss_pred EeCCCCCChhhhhhccCCCcceEEEeEEEEeCCC
Q 030093 87 KVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE 120 (183)
Q Consensus 87 ~v~~~~d~~~elwk~~~~~~i~e~KLrV~f~~p~ 120 (183)
.+++..+... ..=+.....+|++-|-+..
T Consensus 101 eIPp~~~~~~-----n~lqia~r~rIKlFyRP~~ 129 (218)
T 4ay0_A 101 GIPPKDEDIW-----VDVQFAINNCIKLLVRPNE 129 (218)
T ss_dssp EECC-------------------CEEEEEEECTT
T ss_pred ecCCCCcccc-----ceeEEEEEEEEEEEEcCcc
Confidence 7776432100 0112334678888887754
No 20
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=69.78 E-value=19 Score=28.94 Aligned_cols=96 Identities=14% Similarity=0.177 Sum_probs=59.6
Q ss_pred EEEEEEEEcCCCC-eEEEEEeeCC-------ccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEEEEE
Q 030093 14 VRSAIKIKNTSKS-HVAFKFQTTA-------PKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIIS 85 (183)
Q Consensus 14 ~~~~LtL~N~s~~-~VAFKVKTTa-------P~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKFlIqs 85 (183)
-..+|+|+|.++. ++.--+-... ..-|.|-|+.--|+||+...|.|.. .......|.|.. .-|.+..
T Consensus 16 k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~---~~~~~~lP~DrE--Slf~lnv 90 (218)
T 2xg5_A 16 KSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLST---TPDISKLPQDRE--SLFYFNL 90 (218)
T ss_dssp SEEEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEEEEE---CGGGGGSCSSSC--EEEEEEE
T ss_pred CEEEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEEEEe---cCCCCCCCCCce--EEEEEEe
Confidence 4668999999987 7665543211 2249999999999999999999987 221011244432 3566666
Q ss_pred EEeCCCCCChhhhhhccCCCcceEEEeEEEEeCCC
Q 030093 86 MKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE 120 (183)
Q Consensus 86 ~~v~~~~d~~~elwk~~~~~~i~e~KLrV~f~~p~ 120 (183)
..+++..+. .+ .=+.....+|++-|-+..
T Consensus 91 ~eIPp~~~~-----~n-~lqia~r~rIKlFyRP~~ 119 (218)
T 2xg5_A 91 REIPPRSEK-----AN-VLQIALQTKIKLFYRPAA 119 (218)
T ss_dssp EEECCCCCC-----TT-EEEEEEEEEEEEEEECGG
T ss_pred ecCCCCCCC-----Cc-eEEEEehheeeEEEcCcc
Confidence 666653221 01 012234677888776643
No 21
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=69.53 E-value=12 Score=27.89 Aligned_cols=51 Identities=16% Similarity=0.094 Sum_probs=38.6
Q ss_pred CCCeEEEEEEEEcCCCCe-EEEEEeeCCccceeecCCceeeCCCCeEEEEEEe
Q 030093 10 AGKQVRSAIKIKNTSKSH-VAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 61 (183)
Q Consensus 10 ~~k~~~~~LtL~N~s~~~-VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l 61 (183)
.++.++-.++++|.+... =+|+|+-...+...-.-..+ |+||++..|.+..
T Consensus 31 ~G~~~ti~vtV~N~G~~~a~~~~V~lyvng~~v~t~~v~-La~G~s~tv~f~~ 82 (127)
T 3idu_A 31 VNKLAEYEVHVKNLGGIGVPSTKVRVYINGTLYKNWTVS-LGPKEEKVLTFNW 82 (127)
T ss_dssp TTCCEEEEEEEEECSSSCEEEEEEEEEETTEEEEEEEEE-ECTTCEEEEEEEE
T ss_pred CCCEEEEEEEEEECCCCccCCcEEEEEECCEEEeeEEec-cCCCCeEEEEEEE
Confidence 478899999999998644 48888865555544332333 9999999999998
No 22
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=68.74 E-value=19 Score=28.95 Aligned_cols=100 Identities=9% Similarity=0.127 Sum_probs=60.5
Q ss_pred EEEEEEEEcCCCCeEEEEEeeC-----CccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEEEEEEEe
Q 030093 14 VRSAIKIKNTSKSHVAFKFQTT-----APKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKV 88 (183)
Q Consensus 14 ~~~~LtL~N~s~~~VAFKVKTT-----aP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKFlIqs~~v 88 (183)
-..+|+|+|.++.++.--+-.. ...-|.|-|+.--|+||+...|.|.. ... ..|.|. ---|.+....+
T Consensus 28 k~~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~---~~~--~lP~Dr--Eslf~lnv~eI 100 (221)
T 2co7_B 28 AGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVR---TGG--DMPTDR--ETLQWVCIKAV 100 (221)
T ss_dssp SCEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEE---CCC--CCCSSS--CEEEEEEEEEE
T ss_pred CEEEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCCEEEECCCCceEEEEEE---CCC--CCCCCc--eEEEEEEeecC
Confidence 4568999999988775554321 12249999999999999999999987 221 234443 23677766677
Q ss_pred CCCCCChhhhhhccC---C-CcceEEEeEEEEeCCCCC
Q 030093 89 KADVDYVPELFDEQK---D-QTAAEQILRVVFLNPERP 122 (183)
Q Consensus 89 ~~~~d~~~elwk~~~---~-~~i~e~KLrV~f~~p~~p 122 (183)
++..+.... .... . +.....+|++-|-+..-+
T Consensus 101 Pp~~~~~~~--~~~n~~~~lqia~r~rIKlFyRP~~l~ 136 (221)
T 2co7_B 101 PPENEPSDT--QAKGATLDLNLSINACDKLIFRPDAVK 136 (221)
T ss_dssp CCC-------------CEEEEEEEEEEEEEEEECTTSC
T ss_pred CCCcccccc--cccCcceeEEEEeeeeeeEEEeccccc
Confidence 653221000 0001 1 123477888888776543
No 23
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=63.08 E-value=31 Score=28.19 Aligned_cols=71 Identities=13% Similarity=0.107 Sum_probs=47.3
Q ss_pred EEEEEEEEcCCCCeEEEEEee-----CCccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEEEEEEEe
Q 030093 14 VRSAIKIKNTSKSHVAFKFQT-----TAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKV 88 (183)
Q Consensus 14 ~~~~LtL~N~s~~~VAFKVKT-----TaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKFlIqs~~v 88 (183)
-..+|+|+|.++.++.--+-. +...-|.|-|+.--|+||+...|.|.. ... ..|.|.. --|.+....+
T Consensus 38 k~~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~---~~~--~LP~DRE--Slf~lnv~eI 110 (239)
T 4djm_A 38 SGETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRIVR---TGG--EFPPDRE--SLQWICVKGI 110 (239)
T ss_dssp SCEEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESSEEEECTTEEEEEEEEE---CSC--CCCSSSC--EEEEEEEEEE
T ss_pred CEEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCCeEEECCCCceEEEEEE---CCC--CCCCCce--EEEEEEEEec
Confidence 357899999988876544321 112249999999999999999999987 221 1244432 3566666666
Q ss_pred CCC
Q 030093 89 KAD 91 (183)
Q Consensus 89 ~~~ 91 (183)
|+.
T Consensus 111 Pp~ 113 (239)
T 4djm_A 111 PPK 113 (239)
T ss_dssp CC-
T ss_pred CCC
Confidence 653
No 24
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=61.70 E-value=47 Score=24.90 Aligned_cols=43 Identities=19% Similarity=0.385 Sum_probs=32.3
Q ss_pred CeEEEEEEEEcCCCCeE-EEEEeeCCccceeec--CCce-eeCCCCe
Q 030093 12 KQVRSAIKIKNTSKSHV-AFKFQTTAPKSCFMR--PPGA-ILAPGES 54 (183)
Q Consensus 12 k~~~~~LtL~N~s~~~V-AFKVKTTaP~~Y~Vr--P~~G-iI~Pg~s 54 (183)
....-.++.+|.+..+| -|.++.-.|+.|.++ |.+| .|.|+..
T Consensus 47 ~~~~i~~~f~N~s~~~it~f~fQaAVPKs~kLqL~ppSg~~L~p~~~ 93 (140)
T 1gyu_A 47 SVTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNT 93 (140)
T ss_dssp TEEEEEEEEEECSSSCBEEEEEEEECCTTCEEEECCCSCSCBCGGGC
T ss_pred CEEEEEEEEEECCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCC
Confidence 34666788999887655 899998899998776 6666 5888443
No 25
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=53.37 E-value=81 Score=24.85 Aligned_cols=98 Identities=10% Similarity=0.055 Sum_probs=59.8
Q ss_pred EEEEEEEEcCCC-CeEEEEEeeC-----CccceeecCCceeeCCCCeEEEEEE-eeccCCCCCCCCCCCCCCceEEEEEE
Q 030093 14 VRSAIKIKNTSK-SHVAFKFQTT-----APKSCFMRPPGAILAPGESLIATVF-KFVELPENNEKPMYQKSRDKFKIISM 86 (183)
Q Consensus 14 ~~~~LtL~N~s~-~~VAFKVKTT-----aP~~Y~VrP~~GiI~Pg~s~~I~V~-l~~~~p~~~e~p~~~~~kDKFlIqs~ 86 (183)
...+|+|+|.++ .++.--+-.. ...-|.|-|+.--|+||+...|.|. . .. ...|.|.. .-|.+...
T Consensus 16 k~~sl~l~N~~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~---~~--~~lP~DrE--slf~lnv~ 88 (206)
T 1l4i_A 16 KQVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKENTLRIIDA---TN--GQMPEDRE--SLFWVNVK 88 (206)
T ss_dssp SEEEEEEEECCTTCEEEEEEEEEETTSCBCSSEEEESSEEEEESSEEEEEEEEEC---CT--TCSCSSSC--EEEEEEEE
T ss_pred cEEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEec---CC--CCCCCCce--EEEEEEee
Confidence 467999999986 7766554321 1124999999999999999999998 6 21 11344433 35666555
Q ss_pred EeCCCCCChhhhhhccCCCcceEEEeEEEEeCCCC
Q 030093 87 KVKADVDYVPELFDEQKDQTAAEQILRVVFLNPER 121 (183)
Q Consensus 87 ~v~~~~d~~~elwk~~~~~~i~e~KLrV~f~~p~~ 121 (183)
.+++..+... ....=+.....+|++-|-+..-
T Consensus 89 eIPp~~~~~~---~~n~lqia~r~riKlFyRP~~l 120 (206)
T 1l4i_A 89 AIPAMDKAKT---GENYLQFAIVSRIKLLYRPQGL 120 (206)
T ss_dssp EEECCC-----------CCCEEEEEEEEEEECTTC
T ss_pred cCCCCccccc---CCceEEEEhhheeeEEEecccc
Confidence 5554322100 0011133457889998887654
No 26
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=51.56 E-value=61 Score=25.61 Aligned_cols=97 Identities=8% Similarity=0.061 Sum_probs=60.4
Q ss_pred EEEEEEEEcCCCC-eEEEEEeeC-----CccceeecCCceeeCCCCeEEEEEEe-eccCCCCCCCCCCCCCCceEEEEEE
Q 030093 14 VRSAIKIKNTSKS-HVAFKFQTT-----APKSCFMRPPGAILAPGESLIATVFK-FVELPENNEKPMYQKSRDKFKIISM 86 (183)
Q Consensus 14 ~~~~LtL~N~s~~-~VAFKVKTT-----aP~~Y~VrP~~GiI~Pg~s~~I~V~l-~~~~p~~~e~p~~~~~kDKFlIqs~ 86 (183)
...+|+|+|.++. ++.--+-.. ...-|.|-|+.--|+||+...|.|.. . . ...|.|. -.-|.+...
T Consensus 16 k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~--~---~~lP~Dr--Eslf~lnv~ 88 (205)
T 1klf_A 16 KQVQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDAT--N---NQLPQDR--ESLFWMNVK 88 (205)
T ss_dssp SEEEEEEEECCSSCCEEEEEEEEETTSCCCSSEEEESSEEEECSSEEEEEEEEECS--C---SCSCSSS--CEEEEEEEE
T ss_pred cEEEEEEEcCCCCCcEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecC--C---CCCCCCc--eEEEEEEeE
Confidence 4679999999987 766554321 12349999999999999999999986 2 1 1124433 236666666
Q ss_pred EeCCCCCChhhhhhccCC-CcceEEEeEEEEeCCCC
Q 030093 87 KVKADVDYVPELFDEQKD-QTAAEQILRVVFLNPER 121 (183)
Q Consensus 87 ~v~~~~d~~~elwk~~~~-~~i~e~KLrV~f~~p~~ 121 (183)
.+++..+... .... +.....+|++-|-+..-
T Consensus 89 eIPp~~~~~~----~~n~lqia~r~riKlFyRP~~l 120 (205)
T 1klf_A 89 AIPSMDKSKL----TENTLQLAIISRIKLYYRPAKL 120 (205)
T ss_dssp EECCCCTTST----TSCEEEEEEEEEEEEEEECTTC
T ss_pred ecCCCCcccc----CCceEEEEeeeeeeEEEccccc
Confidence 6665322100 0111 22337788888877543
No 27
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=50.60 E-value=58 Score=27.86 Aligned_cols=65 Identities=15% Similarity=0.178 Sum_probs=47.8
Q ss_pred EEEEEEcCCCCeEEEEEeeCCccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEEEEEEEeCCC
Q 030093 16 SAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKAD 91 (183)
Q Consensus 16 ~~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKFlIqs~~v~~~ 91 (183)
-++.|+|.|+-. |.++-+.+..|.+.++.-.|+|+++..+.|-+ ... .....-+|-|.-..+.++
T Consensus 270 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------~~~~~~~~~~~~~~~~~~ 334 (343)
T 3e38_A 270 VTLSITNVTDLV--LKLKKTAHDTLLVYFRDMTLKPHTRYTVRIGF---KQG------IKGGDVNFEVTNFIVAPD 334 (343)
T ss_dssp EEEEEEECSSSC--EEEEECSCCTTEECCSEEEECTTEEEEEEEEE---CTT------CCCCEEEEEEEEEEEETT
T ss_pred eEEEeecCCCcc--eeeeccccccccccCceEEecCCCeEEEEEec---ccc------ccceEEEEEeeeeeecCC
Confidence 578888888764 56666899999999999999999999999987 111 112345777765554443
No 28
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=48.97 E-value=41 Score=27.80 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=35.6
Q ss_pred CCeEEEEEEEEcCCCCeE-EEEEeeCCccceeecCCc-----eeeCCCCeEEEEEEee
Q 030093 11 GKQVRSAIKIKNTSKSHV-AFKFQTTAPKSCFMRPPG-----AILAPGESLIATVFKF 62 (183)
Q Consensus 11 ~k~~~~~LtL~N~s~~~V-AFKVKTTaP~~Y~VrP~~-----GiI~Pg~s~~I~V~l~ 62 (183)
+.++.=.|+++|.+..++ -|.|+-+ .+.|-+-|.. .-|.||+++++.|-+-
T Consensus 54 ~g~i~l~l~~~N~s~~~is~faIQfN-kNsFGL~p~~~~~~~~~L~pgqs~~v~lpl~ 110 (258)
T 2g30_A 54 QGHIYMEMNFTNKALQHMTDFAIQFN-KNSFGVIPSTPLAIHTPLMPNQSIDVSLPLN 110 (258)
T ss_dssp TTEEEEEEEEEECSSSCBCCCEEEEC-CBTTCCEESSCCCCCSCBCTTCEEEEEEEEE
T ss_pred CCEEEEEEEEecCCccceeeeEEEEc-ccccCcccCccccCCCccCCCCcEEEEEeee
Confidence 456778899999998664 4555443 4455544432 3499999999998874
No 29
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.54 E-value=33 Score=25.31 Aligned_cols=43 Identities=23% Similarity=0.302 Sum_probs=32.7
Q ss_pred CeEEEEEEEEcCCCCeE-EEEEeeCCccceeec--CCce-eeCCCCe
Q 030093 12 KQVRSAIKIKNTSKSHV-AFKFQTTAPKSCFMR--PPGA-ILAPGES 54 (183)
Q Consensus 12 k~~~~~LtL~N~s~~~V-AFKVKTTaP~~Y~Vr--P~~G-iI~Pg~s 54 (183)
+...-.++.+|.+..+| -|.++.-.|+.|.++ |.+| .|.|+..
T Consensus 38 ~~~~i~~~~~N~s~~~it~f~fQaAVPK~~kLqL~p~Sg~~l~p~~~ 84 (131)
T 2e9g_A 38 ALLLITITATNFSEGDVTHFICQAAVPKSLQLQLQAPSGNTVPARGG 84 (131)
T ss_dssp TEEEEEEEEEECSSSCEEEEEEEEECCTTSCCEECCCSCSEECTTTC
T ss_pred CeEEEEEEEEECCCCccccEEEEEEcCcccEEEeeCCCCCCcCCCCC
Confidence 34667788999987655 889998889998766 6666 6888554
No 30
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=42.15 E-value=82 Score=22.22 Aligned_cols=47 Identities=19% Similarity=0.238 Sum_probs=36.5
Q ss_pred CCeEEEEEEEEcCCC---CeEEEEEeeC---CccceeecCCceeeCCCCeEEEEEEe
Q 030093 11 GKQVRSAIKIKNTSK---SHVAFKFQTT---APKSCFMRPPGAILAPGESLIATVFK 61 (183)
Q Consensus 11 ~k~~~~~LtL~N~s~---~~VAFKVKTT---aP~~Y~VrP~~GiI~Pg~s~~I~V~l 61 (183)
++.....++++|+=+ ....|-|--. .+..+. .|-|.||+++.+++.+
T Consensus 19 ~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~~~~~~----~~~v~pg~~~~~~~~~ 71 (102)
T 2xzz_A 19 GQECEVQIVFKNPLPVTLTNVVFRLEGSGLQRPKILN----VGDIGGNETVTLRQSF 71 (102)
T ss_dssp SSCEEEEEEEECCSSSCBCSEEEEEEETTTEEEEEEE----ECCBCTTCEEEEEEEE
T ss_pred CCeEEEEEEEECCCCCcccCEEEEEECCCCCcceEEE----cCcCCCCCEEEEEEEE
Confidence 688999999999976 5668887642 233343 3669999999999998
No 31
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=42.04 E-value=1e+02 Score=22.65 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=20.9
Q ss_pred CCCeEEEEEEEEcCCCCeEEEEEee
Q 030093 10 AGKQVRSAIKIKNTSKSHVAFKFQT 34 (183)
Q Consensus 10 ~~k~~~~~LtL~N~s~~~VAFKVKT 34 (183)
.+..+.-.|+|+|+++.++-+-+.+
T Consensus 16 ~g~~v~~~ltv~N~s~~~v~l~f~S 40 (120)
T 3isy_A 16 EPEQIKFNMSLKNQSERAIEFQFST 40 (120)
T ss_dssp CSSCEEEEEEEEECSSSCEEEEESS
T ss_pred CCCeEEEEEEEEcCCCCcEEEEeCC
Confidence 4568899999999999999888754
No 32
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=41.60 E-value=53 Score=25.97 Aligned_cols=47 Identities=11% Similarity=0.167 Sum_probs=30.6
Q ss_pred ceEEeCCCCCeEEEEEEEEcCCCCeEEEEEeeCCccceeecCCceeeCCCCeEEEE
Q 030093 3 PIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIAT 58 (183)
Q Consensus 3 eL~F~~~~~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~ 58 (183)
.|.|...- ..|+++|+|..+|.|-=-+.+-+.+ . .+.|.|+++..+.
T Consensus 130 ~L~~~~~~-----~~l~v~Nptpy~vtl~~l~~~g~~~---~-~~mv~P~s~~~~~ 176 (205)
T 1klf_A 130 KLRFRRSA-----NSLTLINPTPYYLTVTELNAGTRVL---E-NALVPPMGESTVK 176 (205)
T ss_dssp GCEECCCS-----SEEEEEECSSSCEEEEEEESSSSBC---C-CEEECTTEEEEEE
T ss_pred eeEEEEcC-----CEEEEECCCCCEEEEEEEEeCCccc---c-cceEcCCCcceee
Confidence 46665421 2599999999999885322222222 2 3799999988765
No 33
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2
Probab=37.83 E-value=1.3e+02 Score=22.57 Aligned_cols=42 Identities=21% Similarity=0.389 Sum_probs=31.7
Q ss_pred CeEEEEEEEEcCCCCeE-EEEEeeCCccceeec--CCce-eeCCCC
Q 030093 12 KQVRSAIKIKNTSKSHV-AFKFQTTAPKSCFMR--PPGA-ILAPGE 53 (183)
Q Consensus 12 k~~~~~LtL~N~s~~~V-AFKVKTTaP~~Y~Vr--P~~G-iI~Pg~ 53 (183)
....-.++.+|.+..+| -|.++.-.|+.|.++ |.+| .|.|+.
T Consensus 53 ~~~~i~~~f~N~s~~~it~f~fQaAVPK~~kLqL~ppSg~~L~p~~ 98 (146)
T 1iu1_A 53 SVTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSIVPAFN 98 (146)
T ss_dssp TEEEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGG
T ss_pred CEEEEEEEEEeCCCCccccEEEEEEcCcccEEEeeCCCCCccCCCC
Confidence 34666788999887655 888888899998776 6666 588844
No 34
>2huh_A Putative DNA mismatch repair protein; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.54A {Bacteroides thetaiotaomicron} SCOP: b.7.5.1
Probab=37.35 E-value=45 Score=25.64 Aligned_cols=66 Identities=12% Similarity=0.177 Sum_probs=50.2
Q ss_pred EEEEEEEcCCCCeEEEEEeeCCccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEEEEEEEeCCC
Q 030093 15 RSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKAD 91 (183)
Q Consensus 15 ~~~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKFlIqs~~v~~~ 91 (183)
.-..-|-|.|+..+.|=..+..-+.+.++ ..|.|+|+..+.|.=.- .. +...-.+|.||-+.-..+
T Consensus 29 ~fe~YlVNdSNy~l~f~y~~~~~~~w~l~-~~G~iePntk~~ieef~---~~-------eln~~~~~~vQ~layK~~ 94 (147)
T 2huh_A 29 PFEAYLVNDSNYYLYYTYLSAEGKAWNNR-SHGLVEPNTKLLLEEFT---KD-------VLNEMERVAVQLIAFKDG 94 (147)
T ss_dssp CEEEEEEECSSSEEEEEEEEEETTEEEEE-EEEEECTTEEEEEEEEC---GG-------GGGGCSSEEEEEEEECSS
T ss_pred ceEEEEEeCCCcEEEEEEEEeeCCeEEEE-EeeEECCCcEEEEEeeC---hh-------HhcCCceEEEEEEEEcCC
Confidence 44678899999999999987777777666 78999999998886442 11 223356899999998774
No 35
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=36.60 E-value=49 Score=24.27 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=28.5
Q ss_pred EEEEEcCCCCeEE---EEEeeCCcc---ceeecCCceeeCCCCeEEEE
Q 030093 17 AIKIKNTSKSHVA---FKFQTTAPK---SCFMRPPGAILAPGESLIAT 58 (183)
Q Consensus 17 ~LtL~N~s~~~VA---FKVKTTaP~---~Y~VrP~~GiI~Pg~s~~I~ 58 (183)
-++|.|.++..+. |+++-...+ .|.. |+.=+|.||+++.|-
T Consensus 26 fV~L~N~s~~~~~L~gW~l~r~v~~~~~~y~F-p~~~~L~pg~~vtVw 72 (123)
T 3hn9_A 26 FIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKY-TSRYVLKAGQTVTIW 72 (123)
T ss_dssp EEEEEECSSSCEECTTCEEEEEETTEEEEEEC-CTTCEECTTCEEEEE
T ss_pred EEEEEECCCCceecCCcEEEEEeCCCceEEEc-CCCcEECCCCEEEEE
Confidence 5899999986664 777644332 3544 666689999997653
No 36
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=35.75 E-value=37 Score=27.31 Aligned_cols=48 Identities=13% Similarity=0.139 Sum_probs=31.0
Q ss_pred ceEEeCCCCCeEEEEEEEEcCCCCeEEEEEeeCCccceeecCCceeeCCCCeEEEEE
Q 030093 3 PIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATV 59 (183)
Q Consensus 3 eL~F~~~~~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V 59 (183)
+|.|...- ..|+++|+|..+|.|-=-+-+-+ .+ ..+.|.|+++..+.+
T Consensus 140 ~L~~~~~g-----~~l~v~NptPyyvtl~~l~~~g~--~i--~~~mv~P~s~~~~~l 187 (218)
T 4ay0_A 140 NLSWKVDG-----GKLIAENPSPFYMNIGELTFGGK--SI--PSHYIPPKSTWAFDL 187 (218)
T ss_dssp GCEEEEET-----TEEEEEECSSSCEEEEEEEETTE--EC--CCCEECTTEEEEEEC
T ss_pred ceEEEEeC-----CEEEEECCCCCEEEEEEEEECCE--Ec--cCcEECCCCeeEEEC
Confidence 45665432 35999999999998842222222 23 247999999877654
No 37
>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis, A/B(TIM)-barrel, site directed mutagenesis; HET: CBS; 1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3 c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*
Probab=35.29 E-value=60 Score=31.55 Aligned_cols=49 Identities=14% Similarity=0.207 Sum_probs=35.7
Q ss_pred eEEEEEEEEcCC------CCeEE--------------EEEeeCCccceeecCCcee--eCCCCeEEEEEEe
Q 030093 13 QVRSAIKIKNTS------KSHVA--------------FKFQTTAPKSCFMRPPGAI--LAPGESLIATVFK 61 (183)
Q Consensus 13 ~~~~~LtL~N~s------~~~VA--------------FKVKTTaP~~Y~VrP~~Gi--I~Pg~s~~I~V~l 61 (183)
-.+..|+|+|.+ +=.+. |||..-+-+.|.+.|..++ |+||+++.|.++.
T Consensus 39 ~~~~~~tl~n~~~~~~~~~w~iyf~~~r~i~~~~~~~~~i~~~~gd~~~l~P~~~f~~~~~g~~~~~~~~~ 109 (858)
T 1c7s_A 39 CNRVLFTLSNDGQAIDGKDWVIYFHSPRQTLRVDNDQFKIAHLTGDLYKLEPTAKFSGFPAGKAVEIPVVA 109 (858)
T ss_dssp EEEEEEEEEECSSCBCCCCCEEEEECSSCEEEECSTTEEEEECSTTEEEEEECTTCCCBCTTEEEEEEEEE
T ss_pred eeEEEEEEEcCCCCcCCCCcEEEEecceeeecCCCCCeeEEEEeCeEEEEecCCCCCccCCCCEEEEEEEe
Confidence 567899999992 22233 4554445566888898886 9999999999974
No 38
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=35.11 E-value=37 Score=22.02 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=17.8
Q ss_pred EEEEEcCCCCeEEEEEeeCCc
Q 030093 17 AIKIKNTSKSHVAFKFQTTAP 37 (183)
Q Consensus 17 ~LtL~N~s~~~VAFKVKTTaP 37 (183)
.|++...+...+.|||+.|.+
T Consensus 3 ~lkV~~~~g~~v~~~v~~~t~ 23 (72)
T 1wm3_A 3 NLKVAGQDGSVVQFKIKRHTP 23 (72)
T ss_dssp EEEEECTTSCEEEEEECTTSC
T ss_pred EEEEECCCCCEEEEEECCCCh
Confidence 578888888899999997766
No 39
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=34.57 E-value=1.3e+02 Score=23.35 Aligned_cols=51 Identities=12% Similarity=0.183 Sum_probs=38.5
Q ss_pred CCeEEEEEEEEcCCC-----CeEEEEEeeCCccc-eeecCCceeeCCCCeEEEEEEe
Q 030093 11 GKQVRSAIKIKNTSK-----SHVAFKFQTTAPKS-CFMRPPGAILAPGESLIATVFK 61 (183)
Q Consensus 11 ~k~~~~~LtL~N~s~-----~~VAFKVKTTaP~~-Y~VrP~~GiI~Pg~s~~I~V~l 61 (183)
+-.....|.|+|+++ .-++|.++...-.. --+-|..|.|.++++..+.|-+
T Consensus 61 ~~~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v~Vpv 117 (174)
T 1yyc_A 61 GVDYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLDVPV 117 (174)
T ss_dssp SEEEEEEEEEEECSSSCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEEEEEEE
T ss_pred eEEEEEEEEEECCCCCCccccceEEEEEECCEEEEEEecCCCceECCCCcEEEEEEE
Confidence 346778999999987 55789998754333 2466888999999988887776
No 40
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=33.57 E-value=1.4e+02 Score=27.22 Aligned_cols=50 Identities=10% Similarity=0.074 Sum_probs=37.6
Q ss_pred CeEEEEEEEEcCCCCeEEEEEeeCCccce--eecCCceee-CCCCeEEEEEEe
Q 030093 12 KQVRSAIKIKNTSKSHVAFKFQTTAPKSC--FMRPPGAIL-APGESLIATVFK 61 (183)
Q Consensus 12 k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y--~VrP~~GiI-~Pg~s~~I~V~l 61 (183)
...+-+-+++|.....-.|++..++|.-. .|.|+.=.+ ..|++..++|++
T Consensus 537 ~~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~ 589 (621)
T 3vta_A 537 FNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTV 589 (621)
T ss_dssp EEEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEE
T ss_pred eEEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEE
Confidence 34555668999999889999998888754 456877655 467888777776
No 41
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=31.86 E-value=85 Score=23.55 Aligned_cols=50 Identities=10% Similarity=0.125 Sum_probs=36.1
Q ss_pred CeEEEEEEEEcCCC-----CeEEEEEeeCCccce-eecCCceeeCCCCeEEEEEEe
Q 030093 12 KQVRSAIKIKNTSK-----SHVAFKFQTTAPKSC-FMRPPGAILAPGESLIATVFK 61 (183)
Q Consensus 12 k~~~~~LtL~N~s~-----~~VAFKVKTTaP~~Y-~VrP~~GiI~Pg~s~~I~V~l 61 (183)
-.....|.++|+++ .-++|.++...-..- -+-|..|.|.++++..+.|-.
T Consensus 39 ~~~~~~l~V~NPN~~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~v~vpv 94 (151)
T 1xo8_A 39 VEYLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTALDIPV 94 (151)
T ss_dssp ECEEEEEEEECSSSSCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEEEEECC
T ss_pred eEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEecCCCcEECCCCcEEEEEEE
Confidence 35678999999987 456888886544333 455777888888888777665
No 42
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=31.74 E-value=37 Score=27.74 Aligned_cols=38 Identities=16% Similarity=0.083 Sum_probs=26.5
Q ss_pred EEEEEcCCCCeEEEE-EeeCCccceeecCCceeeCCCCeEEEE
Q 030093 17 AIKIKNTSKSHVAFK-FQTTAPKSCFMRPPGAILAPGESLIAT 58 (183)
Q Consensus 17 ~LtL~N~s~~~VAFK-VKTTaP~~Y~VrP~~GiI~Pg~s~~I~ 58 (183)
.|+++|+|..+|.|- ++- .-+ .+. ..|.|.|+++..+.
T Consensus 171 ~l~v~NptPyyvtl~~l~~-~g~--~~~-~~~mV~P~s~~~~~ 209 (239)
T 4djm_A 171 RLKGVNPTPFYINLSTLTV-GGK--EVK-EREYIAPFSSREYP 209 (239)
T ss_dssp EEEEECCSSSCBCEEEEEE-TTE--ECS-SCCCBCTTCEEEEE
T ss_pred EEEEECCCceEEEEEEEEE-CCE--ecc-CceeEcCCcceEEE
Confidence 599999999988774 322 122 222 56899999988764
No 43
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A
Probab=30.62 E-value=2.1e+02 Score=22.98 Aligned_cols=92 Identities=9% Similarity=0.111 Sum_probs=57.3
Q ss_pred EEEEEEEEcCCCC-eEEEE--EeeCC----ccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEEEEEE
Q 030093 14 VRSAIKIKNTSKS-HVAFK--FQTTA----PKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISM 86 (183)
Q Consensus 14 ~~~~LtL~N~s~~-~VAFK--VKTTa----P~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKFlIqs~ 86 (183)
-..+|+|+|.++. ++.-- |.... ..-|.|-|+.--|+||+...|.|.. ... ..|.|.. --|.+...
T Consensus 16 k~~sl~l~N~~~~~p~LvQsWid~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~---~~~--~LP~DRE--Slf~lnv~ 88 (224)
T 3gfu_C 16 DALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIM---ASD--HLPKDKE--SVYWLNLQ 88 (224)
T ss_dssp SCEEEEEEECCSSCCEEEEEEEEESSCCSCSCSEEEESSEEEECTTCEEEEEEEE---CSC--CCCSSSC--EEEEEEEE
T ss_pred ceEEEEEEeCCCCccEEEEEEEecCCCCcccCCEEEcCCeEEECCCCceEEEEEE---CCC--CCCCCce--EEEEEEee
Confidence 3578999999875 54332 22211 1239999999999999999999987 221 1244432 45666666
Q ss_pred EeCCCCCChhhhhhccCCCcceEEEeEEEEeCC
Q 030093 87 KVKADVDYVPELFDEQKDQTAAEQILRVVFLNP 119 (183)
Q Consensus 87 ~v~~~~d~~~elwk~~~~~~i~e~KLrV~f~~p 119 (183)
.+++..+ ...=+.....+|++-|-+.
T Consensus 89 eIPp~~~-------~n~Lqiair~rIKLFyRP~ 114 (224)
T 3gfu_C 89 DIPPALE-------GSGIAVALRTKLKLFYRPK 114 (224)
T ss_dssp EECCCCS-------SSBCCEEEEEEEEEEEECG
T ss_pred cCCCCCC-------CCeEEEEEEEEeeEEEccc
Confidence 6665321 1112334577888888764
No 44
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=29.31 E-value=36 Score=27.28 Aligned_cols=39 Identities=10% Similarity=0.122 Sum_probs=27.0
Q ss_pred EEEEEcCCCCeEEEE-EeeCCccceeecCCceeeCCCCeEEEEE
Q 030093 17 AIKIKNTSKSHVAFK-FQTTAPKSCFMRPPGAILAPGESLIATV 59 (183)
Q Consensus 17 ~LtL~N~s~~~VAFK-VKTTaP~~Y~VrP~~GiI~Pg~s~~I~V 59 (183)
.|+++|+|..+|.|- ++. .-+. +. ..|.|.|+++..+.+
T Consensus 154 ~l~v~Nptpy~vtl~~l~~-~g~~--~~-~~~mv~P~s~~~~~l 193 (221)
T 2co7_B 154 KLKVENPTPFYMNLASVTV-GGKP--IT-GLEYVPPFADKTLNM 193 (221)
T ss_dssp EEEEEECSSSCBCEEEEEE-TTEE--CC-CCCCBCTTEEEEEC-
T ss_pred EEEEECCCCcEEEEEEEee-CCee--cc-CceeEcCCCceEEec
Confidence 599999999888764 332 2222 32 578999999887653
No 45
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=29.22 E-value=52 Score=22.65 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=18.9
Q ss_pred EEEEEEEcCCCCeEEEEEeeCCc
Q 030093 15 RSAIKIKNTSKSHVAFKFQTTAP 37 (183)
Q Consensus 15 ~~~LtL~N~s~~~VAFKVKTTaP 37 (183)
.-.|+++..+...|.|||+.|.+
T Consensus 5 ~i~ikVk~~~g~~v~~~vk~~t~ 27 (91)
T 2io0_B 5 HINLKVAGQDGSVVQFKIKRHTP 27 (91)
T ss_dssp EEEEEEECTTSCEEEEEEETTSC
T ss_pred eEEEEEECCCCCEEEEEECCCCh
Confidence 34788888888899999997766
No 46
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=29.02 E-value=62 Score=25.56 Aligned_cols=47 Identities=13% Similarity=0.226 Sum_probs=29.0
Q ss_pred ceEEeCCCCCeEEEEEEEEcCCCCeEEEEEeeCCccceeecCCceeeCCCCeEEEE
Q 030093 3 PIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIAT 58 (183)
Q Consensus 3 eL~F~~~~~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~ 58 (183)
.|.|... ...|+++|+|..+|.|-=-+.+-+. +. .|.|.|+++..+.
T Consensus 130 ~L~~~~~-----~~~l~v~Nptpy~vtl~~l~~~g~~--~~--~~mv~P~s~~~~~ 176 (206)
T 1l4i_A 130 KLEFTRE-----NGGLTLFNPTPYYLTVTDLKAGNKS--LE--NTMVPPQGKVTVN 176 (206)
T ss_dssp GCEEECC--------CEEECCSSSCEEEEEEEETTEE--CC--CEEECTTCEEECC
T ss_pred eeEEEEc-----CCEEEEECCCCceEEEEEEeeCCcE--ee--eeEEcCCCcceee
Confidence 4666542 1259999999999987522222222 22 2899999987654
No 47
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=28.22 E-value=59 Score=25.97 Aligned_cols=42 Identities=14% Similarity=0.078 Sum_probs=27.7
Q ss_pred EEEEEcCCCCeEEEEEeeCCccceeecC-CceeeCCCCeEEEE
Q 030093 17 AIKIKNTSKSHVAFKFQTTAPKSCFMRP-PGAILAPGESLIAT 58 (183)
Q Consensus 17 ~LtL~N~s~~~VAFKVKTTaP~~Y~VrP-~~GiI~Pg~s~~I~ 58 (183)
.|+++|+|..+|.|-=-+-.++.-.+.. ..|.|.|+++..+.
T Consensus 140 ~l~v~Nptpy~vtl~~l~~~~~g~~~~~~~~~mv~P~s~~~~~ 182 (218)
T 2xg5_A 140 GYRIENPTPYYVTVIGLGGSEKQAEEGEFETVMLSPRSEQTVK 182 (218)
T ss_dssp EEEEEECSSSCEEEEEEESSHHHHHHSCCCCEEECTTEEEEEE
T ss_pred EEEEECCCCCeEEEEEEEEccCCcCccccCcceEcCCCceeec
Confidence 5999999999998852222212111211 46899999988765
No 48
>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E*
Probab=28.21 E-value=1.1e+02 Score=21.70 Aligned_cols=50 Identities=10% Similarity=0.139 Sum_probs=33.2
Q ss_pred CeEEEEEEEEcCCCCeE-----EEEEe-------------eCCccceeecCC--ceeeCC-CCeEEEEEEe
Q 030093 12 KQVRSAIKIKNTSKSHV-----AFKFQ-------------TTAPKSCFMRPP--GAILAP-GESLIATVFK 61 (183)
Q Consensus 12 k~~~~~LtL~N~s~~~V-----AFKVK-------------TTaP~~Y~VrP~--~GiI~P-g~s~~I~V~l 61 (183)
.-....++|+|.++.+| .|-+- +.+-..|.++|. .|-|+| |+++.+-+.-
T Consensus 15 ~Gf~~~vtVtN~g~~~i~gWtv~~~~p~g~~it~~Wna~~s~sG~~vt~~n~~wN~~la~~G~s~~fGf~g 85 (107)
T 3ndz_E 15 SGASVNVTIKNNGTTPINGWTLKWTMPINQTITNMWSASFVASGTTLSVTNAGYNGTIAANGGTQSFGFNI 85 (107)
T ss_dssp SEEEEEEEEEECSSSCEESCEEEEECCTTEEEEEEESEEEEEETTEEEEEECSTTCEECTTTEEEEEEEEE
T ss_pred CCEEEEEEEEeCCCCcccCcEEEEEcCCCCEEecccceEEEecCCEEEEEECCcccccCCCCccEEEEEEE
Confidence 34567899999986554 34321 112356888864 489999 9988876654
No 49
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=27.30 E-value=39 Score=27.85 Aligned_cols=43 Identities=12% Similarity=0.165 Sum_probs=26.9
Q ss_pred EEEEEEEcCCCCeEEEE-EeeC-CccceeecCCceeeCCCCeEEEEE
Q 030093 15 RSAIKIKNTSKSHVAFK-FQTT-APKSCFMRPPGAILAPGESLIATV 59 (183)
Q Consensus 15 ~~~LtL~N~s~~~VAFK-VKTT-aP~~Y~VrP~~GiI~Pg~s~~I~V 59 (183)
...|+++|+|..+|.|- ++.. ....+.. ..|.|.|+++..+.+
T Consensus 172 ~~~L~v~Nptpyyvtl~~l~~~~~~~~~~~--~~~mV~P~s~~~~~l 216 (257)
T 3q48_A 172 KTVVQVNNPTPYYVSFASVELIVDGRVMSV--GKGMVAPFSTKEFDW 216 (257)
T ss_dssp --CEEEEECSSSCEEEEEEEEEETTEEEEE--EEEEECTTEEEEECC
T ss_pred CcEEEEECCCceEEEEEEEEEccCCeeccc--cceeEcCCceeEEec
Confidence 34599999999999874 3221 1222222 357899999887653
No 50
>1ifr_A Lamin A/C; immunoglobulin, immune system; 1.40A {Homo sapiens} SCOP: b.1.16.1 PDB: 1ivt_A 3gef_A
Probab=27.18 E-value=71 Score=23.37 Aligned_cols=41 Identities=17% Similarity=0.389 Sum_probs=27.5
Q ss_pred EEEEEcCCCCeE---EEEEeeCC---ccceeecCCceeeCCCCeEEE
Q 030093 17 AIKIKNTSKSHV---AFKFQTTA---PKSCFMRPPGAILAPGESLIA 57 (183)
Q Consensus 17 ~LtL~N~s~~~V---AFKVKTTa---P~~Y~VrP~~GiI~Pg~s~~I 57 (183)
.++|.|.++..+ -|+++-.. +..-+.=|+.=+|.||.++.|
T Consensus 20 fV~l~N~s~~~~~L~gW~l~r~v~~~~~~~y~Fp~~~~L~pg~~vtI 66 (121)
T 1ifr_A 20 FVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAGQVVTI 66 (121)
T ss_dssp EEEEEECSSSCEECTTCEEEEEETTSCCEEEECCSSCEECTTCEEEE
T ss_pred EEEEEeCCCCccccCCCEEEEEcCCCccEEEEeCCCcEECCCCEEEE
Confidence 589999988666 36776432 223334577778999998654
No 51
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=26.68 E-value=2.1e+02 Score=26.48 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=37.7
Q ss_pred EEEEEEEEcCCCCeEEEEEeeCCccceee--cCCceee-CCCCeEEEEEEe
Q 030093 14 VRSAIKIKNTSKSHVAFKFQTTAPKSCFM--RPPGAIL-APGESLIATVFK 61 (183)
Q Consensus 14 ~~~~LtL~N~s~~~VAFKVKTTaP~~Y~V--rP~~GiI-~Pg~s~~I~V~l 61 (183)
.+-+-|+||..+..-.|+++-++|.-..| .|..=.. ..|++...+|++
T Consensus 560 ~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~ 610 (649)
T 3i6s_A 560 QKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTI 610 (649)
T ss_dssp EEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEE
T ss_pred EEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEE
Confidence 67788999999877889999888987664 5988766 489999888887
No 52
>3o0l_A Uncharacterized protein; PFAM DUF1425 family member, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.81A {Shewanella loihica}
Probab=25.59 E-value=1.8e+02 Score=20.71 Aligned_cols=52 Identities=13% Similarity=0.112 Sum_probs=37.5
Q ss_pred CCCeEEEEEEEEcCCCCe--EEEEEeeCCccceeecCC-ce----eeCCCCeEEEEEEe
Q 030093 10 AGKQVRSAIKIKNTSKSH--VAFKFQTTAPKSCFMRPP-GA----ILAPGESLIATVFK 61 (183)
Q Consensus 10 ~~k~~~~~LtL~N~s~~~--VAFKVKTTaP~~Y~VrP~-~G----iI~Pg~s~~I~V~l 61 (183)
.+...+....|+|.+..+ +.||+-==...-+-|.|. .. +|.+++++.|.-.-
T Consensus 36 ~~g~l~~~~~l~N~~~~~~~l~Yrf~WyD~~Gl~v~~~~~~W~~l~l~~~~~~~l~~va 94 (112)
T 3o0l_A 36 EAGFLRARGTIISKSPKDQRLQYKFTWYDINGATVEDEGVSWKSLKLHGKQQMQVTALS 94 (112)
T ss_dssp GGGCEEEEEEEEECSSSCEEEEEEEEEECTTSCBCCCTTCCCEEEEECTTCEEEEEEEC
T ss_pred cCCeEEEEEEEEeCCCCCEEEEEEEEEECCCCCCcCCCCCCcEEEEECCCCeEEEEEEC
Confidence 456678899999999766 788886555666777765 22 47888887777664
No 53
>1p4u_A ADP-ribosylation factor binding protein GGA3; protein transport; 2.20A {Homo sapiens} SCOP: b.1.10.2 PDB: 1om9_A 1na8_A 2dwy_A 2dwx_A
Probab=24.84 E-value=2.2e+02 Score=21.38 Aligned_cols=40 Identities=28% Similarity=0.400 Sum_probs=29.4
Q ss_pred EEEEEEEcCCCCeE-EEEEeeCCccceeec--CCce-eeCCCCe
Q 030093 15 RSAIKIKNTSKSHV-AFKFQTTAPKSCFMR--PPGA-ILAPGES 54 (183)
Q Consensus 15 ~~~LtL~N~s~~~V-AFKVKTTaP~~Y~Vr--P~~G-iI~Pg~s 54 (183)
.-.++.+|.+..+| -|.++.-.|+.|.++ |.+| .|.|+..
T Consensus 56 ~i~~~~~N~s~~~is~f~fQaAVPK~~kLqL~ppSg~~L~p~~~ 99 (153)
T 1p4u_A 56 VVVVSMLNMAPLPVKSIVLQAAAPKSMKVKLQPPSGTELSPFSP 99 (153)
T ss_dssp EEEEEEEECSSSCBEEEEEEEECBTTSEEEECCCSCSCBCCCBT
T ss_pred EEEEEEEeCCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCc
Confidence 34677889887655 888888889998776 6666 5877653
No 54
>4gio_A Putative lipoprotein; unknown function; 1.90A {Campylobacter jejuni subsp}
Probab=24.52 E-value=1.7e+02 Score=20.76 Aligned_cols=51 Identities=12% Similarity=0.189 Sum_probs=37.4
Q ss_pred CCeEEEEEEEEcCCCCeEEEEEeeCCccceeecCC------ceeeCCCCeEEEEEEe
Q 030093 11 GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPP------GAILAPGESLIATVFK 61 (183)
Q Consensus 11 ~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~------~GiI~Pg~s~~I~V~l 61 (183)
+......++++|.++..+.||+.==...-+-|.+. .=+|.+++++.|.-+-
T Consensus 35 nG~l~v~v~~~s~~~~~l~Yrf~WyD~~G~~v~~~~~~~W~~~~l~g~~~~~i~~va 91 (107)
T 4gio_A 35 NGYLEFEVILRSTFAKDVIYKVDWLDKDGFVLRDVLNEDYQALRIPAGQEVILRKLA 91 (107)
T ss_dssp TSCEEEEEEECCSSCEEEEEEEEEECTTSCBCCSSCCCCCEEEEECTTCCEEEEEEC
T ss_pred CCEEEEEEEecCCCceEEEEEEEEECCCCCCcCCCCCCCCEEEEEcCCCeEEEEEEC
Confidence 44567888899999999999997656666777653 2357788887777663
No 55
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=24.11 E-value=1.5e+02 Score=22.41 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=26.8
Q ss_pred EEEEEcCCCCeEE---EEEeeCCcc--ceeecCCceeeCCCCeEEEE
Q 030093 17 AIKIKNTSKSHVA---FKFQTTAPK--SCFMRPPGAILAPGESLIAT 58 (183)
Q Consensus 17 ~LtL~N~s~~~VA---FKVKTTaP~--~Y~VrP~~GiI~Pg~s~~I~ 58 (183)
-++|.|+++..+. |+++=+..+ .-+.=|+.=+|.||++++|-
T Consensus 39 fV~L~N~s~~~~~LgGW~L~r~v~g~~~~y~FP~~~~L~pg~~VtVw 85 (144)
T 3jt0_A 39 FIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKYTSRYVLKAGQTVTIW 85 (144)
T ss_dssp EEEEEECSSSCEECTTCEEEEEETTEEEEEECCTTCEECTTCEEEEE
T ss_pred EEEEEECCCCceecCCcEEEEEeCCCceEEEcCCCcEECCCCEEEEE
Confidence 5889999876663 566532222 12344666689999997653
No 56
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=23.75 E-value=75 Score=21.74 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=19.1
Q ss_pred EEEEEEEEcCCCCeEEEEEeeCCc
Q 030093 14 VRSAIKIKNTSKSHVAFKFQTTAP 37 (183)
Q Consensus 14 ~~~~LtL~N~s~~~VAFKVKTTaP 37 (183)
..-.|++...+...|.|||+.|.+
T Consensus 16 ~~i~ikV~~~~g~~i~~~v~~~t~ 39 (93)
T 2d07_B 16 DHINLKVAGQDGSVVQFKIKRHTP 39 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSC
T ss_pred CeEEEEEECCCCCEEEEEEccCCH
Confidence 456788888878889999987766
No 57
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A*
Probab=23.36 E-value=89 Score=27.66 Aligned_cols=52 Identities=23% Similarity=0.264 Sum_probs=37.4
Q ss_pred CCCCCeEEEEEEEEcCCCCeE---EEEEeeCCccceeecCCceeeCCCCeEEEEEEe
Q 030093 8 DEAGKQVRSAIKIKNTSKSHV---AFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 61 (183)
Q Consensus 8 ~~~~k~~~~~LtL~N~s~~~V---AFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l 61 (183)
.++++..+..++|+|.....+ .+.| +.|..|.+.....-+.||++.++.+++
T Consensus 369 ~~~g~~~~~~~~vtn~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~t~~~~v 423 (601)
T 1w8o_A 369 LEPGQQVTVPVAVTNQSGIAVPKPSLQL--DASPDWQVQGSVEPLMPGRQAKGQVTI 423 (601)
T ss_dssp ECTTCEEEEEEEEECCSSSCBSSCEEEE--ECCTTSEEEEEECCBCTTCEEEEEEEE
T ss_pred ecCCceeEEEEEEECCCceeccCceEEE--ecCCCcEEeccccccCCCCceEEEEEE
Confidence 456788899999999866443 4444 347778777655668899998886555
No 58
>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A
Probab=22.95 E-value=2.2e+02 Score=22.94 Aligned_cols=56 Identities=13% Similarity=0.008 Sum_probs=39.2
Q ss_pred CeEEEEEEEEcCCCCeEE-EEEeeCCcc----cee--ecCCceeeCCCCeEEEEEEeeccCCC
Q 030093 12 KQVRSAIKIKNTSKSHVA-FKFQTTAPK----SCF--MRPPGAILAPGESLIATVFKFVELPE 67 (183)
Q Consensus 12 k~~~~~LtL~N~s~~~VA-FKVKTTaP~----~Y~--VrP~~GiI~Pg~s~~I~V~l~~~~p~ 67 (183)
...+-.|.+.|.+..++. |.+....|. .+. ..|.-+.|+||+.+...|.+-.-.|.
T Consensus 42 ~~gri~l~~gNKs~~~l~~f~~~i~~~~~~~~~l~~~~~~~~~~I~~~~q~qq~i~v~~~~~f 104 (247)
T 1kyf_A 42 NLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTVDGGAQVQQVVNIECISDF 104 (247)
T ss_dssp TEEEEEEEEEECSSSCBEEEEEEEECCHHHHHHEEEEECCCCSCBCTTCEEEEEEEEEECSCC
T ss_pred CeEEEEEEEEcCCCCceeeEEEEEecCcccCCCeeEecCCCCceeCCCcEEEEEEEEEEcccc
Confidence 366788999999987764 888664544 244 46777889999988877665322444
No 59
>2lv4_A Putative outer membrane or exported protein; antivirulence, adhesion, protein binding; NMR {Salmonella enterica subsp}
Probab=22.91 E-value=62 Score=24.58 Aligned_cols=30 Identities=30% Similarity=0.395 Sum_probs=25.6
Q ss_pred EeeCCccceeecCCceeeCCCCeEEEEEEe
Q 030093 32 FQTTAPKSCFMRPPGAILAPGESLIATVFK 61 (183)
Q Consensus 32 VKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l 61 (183)
++|.+|+.=.|.=..-+|.||+|..|++..
T Consensus 43 ~n~pSpDLtvisiDk~vL~PGESA~it~Iv 72 (146)
T 2lv4_A 43 SNTPSPDLTVMSIDKSVLSPGESATITTIV 72 (146)
T ss_dssp CCCBCGGGCEEECCCCCBCTTCEEEEEEEC
T ss_pred ecCCCCCcEEEecCccccCCCcceEEEEEE
Confidence 455678888888888999999999999887
No 60
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=21.83 E-value=1.4e+02 Score=21.46 Aligned_cols=52 Identities=10% Similarity=0.006 Sum_probs=33.3
Q ss_pred CCCeEEEEEEEEcCCC-CeEEEEEeeCCccceeecCCceeeCCCCeEEEEEEe
Q 030093 10 AGKQVRSAIKIKNTSK-SHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 61 (183)
Q Consensus 10 ~~k~~~~~LtL~N~s~-~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l 61 (183)
.+..++-..+|+|.+. ..-+|.|+-...+...=.-+.+-|++|++..|.++.
T Consensus 17 ~~~~~ti~atVkN~G~~~a~~~~V~ly~~g~~v~t~~v~~LaaG~s~tv~~~w 69 (114)
T 2l0d_A 17 PNTVNTMTATIENQGNKDSTSFNVSLLVDGIVVDTQTVTSLESENSTNVDFHW 69 (114)
T ss_dssp TTSEEEEEEEEEECSSSCBCCEEEEEEETTEEEEEEEESCBCBTCEEEEEEEE
T ss_pred CCCeEEEEEEEEECCCCCCCCEEEEEEECCEEEcceecccccCCCEEEEEEEE
Confidence 4778899999999975 334555543222221111133458999999999886
No 61
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=20.94 E-value=88 Score=22.80 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=19.7
Q ss_pred EEEEEEEEcCCCCeEEEEEeeCCcc
Q 030093 14 VRSAIKIKNTSKSHVAFKFQTTAPK 38 (183)
Q Consensus 14 ~~~~LtL~N~s~~~VAFKVKTTaP~ 38 (183)
..-.|++...+...|-|||+.|.|-
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L 63 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHL 63 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCT
T ss_pred CeEEEEEEcCCCCEEEEEEccCChH
Confidence 4557888888888899999977773
No 62
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=20.75 E-value=1e+02 Score=21.09 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=19.1
Q ss_pred EEEEEEEEcCCCCeEEEEEeeCCc
Q 030093 14 VRSAIKIKNTSKSHVAFKFQTTAP 37 (183)
Q Consensus 14 ~~~~LtL~N~s~~~VAFKVKTTaP 37 (183)
..-.|+++..+...|.|||+.|.+
T Consensus 6 ~~i~ikVk~~~g~~i~~~v~~~t~ 29 (94)
T 2io1_B 6 DHINLKVAGQDGSVVQFKIKRHTP 29 (94)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSC
T ss_pred CeEEEEEECCCCCEEEEEECCCCH
Confidence 345788888888899999997766
No 63
>2lll_A Lamin-B2; immunoglobulin-like fold, structural protein, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=20.66 E-value=98 Score=23.28 Aligned_cols=42 Identities=17% Similarity=0.300 Sum_probs=27.9
Q ss_pred EEEEEcCCCCeE---EEEEeeCCcc---ceeecCCceeeCCCCeEEEE
Q 030093 17 AIKIKNTSKSHV---AFKFQTTAPK---SCFMRPPGAILAPGESLIAT 58 (183)
Q Consensus 17 ~LtL~N~s~~~V---AFKVKTTaP~---~Y~VrP~~GiI~Pg~s~~I~ 58 (183)
.++|.|.++..+ -|+++=...+ .-+.=|+.=+|.||+++.|-
T Consensus 35 fV~L~N~s~~~~~L~GW~L~r~v~g~~~~~y~Fp~~~~L~pg~~VtIw 82 (139)
T 2lll_A 35 FVQLKNNSDKDQSLGNWRIKRQVLEGEEIAYKFTPKYILRAGQMVTVW 82 (139)
T ss_dssp EEEEEECSSSCEECSSCEEEEEETTSCEEEEECCTTCEECTTCEEEEE
T ss_pred EEEEEECCCCccccCCCEEEEecCCCccEEEEECCCcEECCCCEEEEE
Confidence 689999987666 4677643221 23335777789999986543
Done!