BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030094
(183 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FLB0|RH18_ARATH DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis thaliana
GN=RH18 PE=2 SV=1
Length = 593
Score = 268 bits (686), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 133/167 (79%), Positives = 151/167 (90%), Gaps = 4/167 (2%)
Query: 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60
MG+IISPTRELS+QIY+VAQPF+STL +V SVLLVGG EVKAD+K IEEEG N+LIGTPG
Sbjct: 92 MGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVLIGTPG 151
Query: 61 RLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120
RL DIMERM++LDFRNLEIL+LDEADRLL+MGFQ+Q++YIISRLPK RRTGLFSATQTE
Sbjct: 152 RLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRRTGLFSATQTEG 211
Query: 121 VEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEVI 167
VEEL+KAGLRNPVRVEVRA+SKS SSQQL +SKTP GLHLE +
Sbjct: 212 VEELAKAGLRNPVRVEVRAKSKSE----SSQQLTNSKTPSGLHLEYM 254
>sp|Q761Z9|RH18_ORYSJ DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa subsp.
japonica GN=Os01g0164500 PE=1 SV=2
Length = 647
Score = 251 bits (640), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 120/181 (66%), Positives = 153/181 (84%), Gaps = 2/181 (1%)
Query: 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60
+G+IISPTRELSSQIY+VAQPF +TL V S+LLVGG ++KA++KK+EEEGAN+L+GTPG
Sbjct: 98 LGIIISPTRELSSQIYNVAQPFFATLKGVSSMLLVGGFDIKAELKKLEEEGANILVGTPG 157
Query: 61 RLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120
+L+D+MER+D L+++NLEIL+LDEADRLLD+GFQKQI+ IIS+LPKLRRTGLFSATQTEA
Sbjct: 158 KLFDVMERLDTLNYKNLEILILDEADRLLDLGFQKQITSIISKLPKLRRTGLFSATQTEA 217
Query: 121 VEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEVIWNVNQMRNHHNLL 180
V+EL+KAGLRNPVRVEV+ E K + Q+L SKTPLGL LE + + + N + L
Sbjct: 218 VKELAKAGLRNPVRVEVKTEVKPTGKDGAQQELGPSKTPLGLRLE--YMICEASNKSSQL 275
Query: 181 I 181
+
Sbjct: 276 V 276
>sp|Q8GXD6|RH49_ARATH DEAD-box ATP-dependent RNA helicase 49 OS=Arabidopsis thaliana
GN=RH49 PE=2 SV=2
Length = 558
Score = 226 bits (575), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 111/148 (75%), Positives = 130/148 (87%)
Query: 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60
MG+IISPTRELS+QI+ VA+PF+STLP+V SVLLVGG EV+AD+ +EEEGANLLIGTPG
Sbjct: 92 MGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIGTPG 151
Query: 61 RLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120
RL D+M+RM+ LDFRNLEIL+LDEADRLLDMGFQKQ++YIISRLPK RRTGLFSATQT+A
Sbjct: 152 RLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQA 211
Query: 121 VEELSKAGLRNPVRVEVRAESKSHHVSA 148
V +L+KAGLRN + V AESKS S
Sbjct: 212 VADLAKAGLRNAMEVISGAESKSKTSSG 239
>sp|Q9FVV4|RH55_ARATH DEAD-box ATP-dependent RNA helicase 55 OS=Arabidopsis thaliana
GN=RH55 PE=2 SV=1
Length = 465
Score = 184 bits (467), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 94/146 (64%), Positives = 115/146 (78%), Gaps = 9/146 (6%)
Query: 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60
MG+IISPTRELS+QI+ VA+ + EV+AD+ +EEEGANLLIGTPG
Sbjct: 93 MGVIISPTRELSAQIHKVARAVRLDFAKCR--------EVEADMNTLEEEGANLLIGTPG 144
Query: 61 RLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120
RL D+M+RM+ LDFRNLEIL+LDEADRLLDMGFQKQ++YIISRLPK RRTGLFSATQT+A
Sbjct: 145 RLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQA 204
Query: 121 VEELSKAGLRNPVRVEVRAESKSHHV 146
V +L+KAGLRNP ++ A+ KS +
Sbjct: 205 VADLAKAGLRNPY-LKCEADQKSSQL 229
>sp|Q8JHJ2|DDX55_DANRE ATP-dependent RNA helicase DDX55 OS=Danio rerio GN=ddx55 PE=2 SV=2
Length = 593
Score = 150 bits (380), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 84/166 (50%), Positives = 111/166 (66%), Gaps = 13/166 (7%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+II+PTREL+ QI V F+ P +LL+GG DV+K++ +GAN++I TPGR
Sbjct: 85 ALIITPTRELAMQISEVMGRFLQGFPQFTQILLIGGSNPIEDVEKLKTQGANIIIATPGR 144
Query: 62 LYDIMER-MDVLDF----RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116
L D+ R D LD ++L++LVLDEADRLLDMGF+ ++ I+ LPK RRTGLFSAT
Sbjct: 145 LEDMFRRKADGLDLATAVKSLDVLVLDEADRLLDMGFEASLNTILGYLPKQRRTGLFSAT 204
Query: 117 QTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGL 162
QT+ +E+L +AGLRNPVR+ V K V+ASS Q KTP L
Sbjct: 205 QTQELEKLVRAGLRNPVRITV----KEKGVAASSVQ----KTPAKL 242
>sp|Q6AZV7|DDX55_XENLA ATP-dependent RNA helicase DDX55 OS=Xenopus laevis GN=ddx55 PE=2
SV=1
Length = 594
Score = 149 bits (376), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 82/167 (49%), Positives = 107/167 (64%), Gaps = 13/167 (7%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+II+PTREL+ QI V F P +LL+GG DV+K +E G N+++ TPGR
Sbjct: 85 ALIITPTRELAVQIDEVLSCFTKHFPQFSQILLIGGSNPVDDVRKFKEHGGNIIVATPGR 144
Query: 62 LYDIMERM-DVLDF----RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116
L D+ R D LD + L++L+LDEADRLLDMGF+ I+ I+ LPK RRTGLFSAT
Sbjct: 145 LEDMFRRQADGLDLVICVKTLDVLILDEADRLLDMGFEASINTILGFLPKQRRTGLFSAT 204
Query: 117 QTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLH 163
QT+ +E L +AGLRNPVR+ V K V+A+S Q KTP+ L
Sbjct: 205 QTQELENLVRAGLRNPVRIAV----KEKGVAATSTQ----KTPIRLQ 243
>sp|Q5ZLN8|DDX55_CHICK ATP-dependent RNA helicase DDX55 OS=Gallus gallus GN=DDX55 PE=2
SV=1
Length = 591
Score = 147 bits (371), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 85/185 (45%), Positives = 115/185 (62%), Gaps = 15/185 (8%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+II+PTREL+ QI V F P +LL+GG DV+K +E G N+++ TPGR
Sbjct: 85 AIIITPTRELAIQIDEVLTHFTKHFPKFSQILLIGGRNPMEDVEKFKEHGGNIIVATPGR 144
Query: 62 LYDIMER-MDVLDF----RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116
L D+ R D LD ++L++LVLDEADRLLDMGF+ ++ I++ LPK RRTGLFSAT
Sbjct: 145 LEDLFRRKADGLDLASCVKSLDVLVLDEADRLLDMGFESSLNAILAFLPKQRRTGLFSAT 204
Query: 117 QTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEVIWNVNQMRNH 176
QT+ VE L +AGLRNPVR+ V K V+A++ Q KTP LE + + +
Sbjct: 205 QTQEVENLVRAGLRNPVRISV----KEKGVAATNTQ----KTP--TRLENYYMICKADEK 254
Query: 177 HNLLI 181
N L+
Sbjct: 255 FNQLV 259
>sp|Q8NHQ9|DDX55_HUMAN ATP-dependent RNA helicase DDX55 OS=Homo sapiens GN=DDX55 PE=1 SV=3
Length = 600
Score = 147 bits (370), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 87/185 (47%), Positives = 115/185 (62%), Gaps = 15/185 (8%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+II+PTREL+ QI V F P+ +L +GG DV++ +++G N+++ TPGR
Sbjct: 85 AIIITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQQGGNIIVATPGR 144
Query: 62 LYDIMER-MDVLDF----RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116
L D+ R + LD R+L++LVLDEADRLLDMGF+ I+ I+ LPK RRTGLFSAT
Sbjct: 145 LEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSAT 204
Query: 117 QTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEVIWNVNQMRNH 176
QT+ VE L +AGLRNPVRV V K V+ASS Q KTP LE + V +
Sbjct: 205 QTQEVENLVRAGLRNPVRVSV----KEKGVAASSAQ----KTP--SRLENYYMVCKADEK 254
Query: 177 HNLLI 181
N L+
Sbjct: 255 FNQLV 259
>sp|Q2NL08|DDX55_BOVIN ATP-dependent RNA helicase DDX55 OS=Bos taurus GN=DDX55 PE=2 SV=1
Length = 601
Score = 147 bits (370), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 86/186 (46%), Positives = 113/186 (60%), Gaps = 26/186 (13%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+II+PTREL+ QI V F P +L +GG DV + +E G N+++ TPGR
Sbjct: 85 AIIITPTRELAVQIEEVLSHFTKPFPQFSQILWIGGRNPGEDVARFKELGGNIIVATPGR 144
Query: 62 LYDIMER-MDVLDF----RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116
L D+ R + LD R+LE+LVLDEADRLLDMGF+ I+ I+ LPK RRTGLFSAT
Sbjct: 145 LEDMFRRKAEGLDLASCVRSLEVLVLDEADRLLDMGFETSINTILEFLPKQRRTGLFSAT 204
Query: 117 QTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEVIWNVNQMRNH 176
QT+ VE L +AGLRNPVR+ V K V+ASS Q KTP +++ NH
Sbjct: 205 QTQEVENLVRAGLRNPVRISV----KEKGVAASSTQ----KTP-----------SRLENH 245
Query: 177 HNLLIC 182
+ ++C
Sbjct: 246 Y--MVC 249
>sp|Q6ZPL9|DDX55_MOUSE ATP-dependent RNA helicase DDX55 OS=Mus musculus GN=Ddx55 PE=2 SV=2
Length = 600
Score = 143 bits (360), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 114/186 (61%), Gaps = 26/186 (13%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
++I+PTREL+ QI V F P +L +GG DV++ ++ G N+++ TPGR
Sbjct: 85 AIVITPTRELAIQIDEVLSHFTKHFPQFSQILWIGGRNPGEDVERFKQHGGNIIVATPGR 144
Query: 62 LYDIMER-MDVLDF----RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116
L D+ R + LD ++L++LVLDEADRLLDMGF+ I+ I+ LPK RRTGLFSAT
Sbjct: 145 LEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSAT 204
Query: 117 QTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEVIWNVNQMRNH 176
QT+ VE L +AGLRNPVR+ V K V+ASS Q KTP +++ NH
Sbjct: 205 QTQEVENLVRAGLRNPVRISV----KEKGVAASSTQ----KTP-----------SRLENH 245
Query: 177 HNLLIC 182
+ +IC
Sbjct: 246 Y--MIC 249
>sp|Q9VHU1|DDX55_DROME Probable ATP-dependent RNA helicase DDX55 homolog OS=Drosophila
melanogaster GN=CG9630 PE=2 SV=1
Length = 613
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 96/147 (65%), Gaps = 7/147 (4%)
Query: 2 GMIISPTRELSSQIYHVAQPFIS--TLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTP 59
++ISPTREL+ QI V F+ L + L+VGG ++ D+ + E +L+ TP
Sbjct: 85 ALVISPTRELARQISEVLAQFLEHEDLEHLNQQLIVGGNSIEEDIATLRRETPCILVCTP 144
Query: 60 GRLYDIMERM-DVLDF----RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114
GRL D+ +R D L+ ++LE LVLDEADRLLD+GF+ ++ I+ LP+ RRTGLFS
Sbjct: 145 GRLEDLFQRKGDDLNLAAQVKSLEFLVLDEADRLLDLGFKTSVNNILGYLPRQRRTGLFS 204
Query: 115 ATQTEAVEELSKAGLRNPVRVEVRAES 141
ATQT V +L +AGLRNPV V V+ ++
Sbjct: 205 ATQTTEVTDLIRAGLRNPVLVSVKEKA 231
>sp|Q2UBZ5|SPB4_ASPOR ATP-dependent rRNA helicase spb4 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=spb4 PE=3 SV=1
Length = 638
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 100/168 (59%), Gaps = 26/168 (15%)
Query: 2 GMIISPTRELSSQIYHV------------------------AQPFISTLPDVKSVLLVGG 37
+IISPTREL+SQIYHV Q F S+ V LL+GG
Sbjct: 90 AIIISPTRELASQIYHVLLSLLAFHPPSASVINPSEDDDVPRQKFPSSTLKVVPQLLLGG 149
Query: 38 VEVKA-DVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQK 95
A D+ K ++ NLL+ TPGRL +++ V + E+LVLDEADRLLD+GF++
Sbjct: 150 STTPAEDLSKFLKQSPNLLVSTPGRLLELLSSPHVHCPQSSFEMLVLDEADRLLDLGFKE 209
Query: 96 QISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKS 143
+ II RLPK RRTGLFSA+ +EAV+++ + GLRNPV+V V+ + S
Sbjct: 210 TLQNIIRRLPKQRRTGLFSASISEAVDQIVRVGLRNPVKVMVKVKGTS 257
>sp|Q750F8|SPB4_ASHGO ATP-dependent rRNA helicase SPB4 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SPB4
PE=3 SV=2
Length = 599
Score = 120 bits (302), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 94/147 (63%), Gaps = 7/147 (4%)
Query: 3 MIISPTRELSSQIYHVAQPFISTLPD----VKSVLLVGG--VEVKADVKKIEEEGANLLI 56
+IISPTREL+SQI V + F++ PD +KS LL+G V+ DV E +L+
Sbjct: 87 IIISPTRELASQIQGVIEAFLTYYPDGEYPIKSQLLIGSNTSSVRDDVAAFLEHRPQILV 146
Query: 57 GTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116
GTPGRL D + +M + + +LDEAD+LLDM F+K + I+ LPK RRTGLFSAT
Sbjct: 147 GTPGRLLDFL-KMPNIKTSSCGAAILDEADKLLDMNFEKDVETILKMLPKQRRTGLFSAT 205
Query: 117 QTEAVEELSKAGLRNPVRVEVRAESKS 143
+ A ++ K G+RNPV+V V+ +K+
Sbjct: 206 VSSAGTQVFKTGMRNPVKVSVKTSNKA 232
>sp|Q6CN92|SPB4_KLULA ATP-dependent rRNA helicase SPB4 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=SPB4 PE=3 SV=1
Length = 596
Score = 120 bits (300), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 92/143 (64%), Gaps = 7/143 (4%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPD----VKSVLLVG--GVEVKADVKKIEEEGANLL 55
+IISPTREL+SQI+ V + F+ PD ++S LLVG V+ D+ + +L
Sbjct: 86 SLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNRPQIL 145
Query: 56 IGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115
+GTPGR+ D +++ +V + +VLDEAD+LLD+ FQK + I+ LPK RRTGLFSA
Sbjct: 146 VGTPGRVLDFLQKTNV-KTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTGLFSA 204
Query: 116 TQTEAVEELSKAGLRNPVRVEVR 138
T A ++ K G+RNPV+V V+
Sbjct: 205 TIESAGAQIFKTGMRNPVKVAVK 227
>sp|Q6BXG0|DBP4_DEBHA ATP-dependent RNA helicase DBP4 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DBP4 PE=3 SV=2
Length = 766
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 107/170 (62%), Gaps = 8/170 (4%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+IISPTREL+ QI+ V I + + L+ GG +VK + +++ + N+L+GTPGR
Sbjct: 121 ALIISPTRELAVQIFEVLVK-IGKHNNFSAGLVTGGKDVKYEKERVSK--MNILVGTPGR 177
Query: 62 LYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
+ + ++ NL++LVLDEADR LDMGF+KQI I+ LP R+T LFSATQ+++V
Sbjct: 178 ISQHLNESVGMETSNLQVLVLDEADRCLDMGFKKQIDNILGHLPPTRQTLLFSATQSDSV 237
Query: 122 EELSKAGLRNPVRVEVRAESKSHHVSASSQQLASS--KTPLGLHLEVIWN 169
++L++ L NP RV + S +SA+ + L K PL L+V+W+
Sbjct: 238 KDLARLSLANPKRVGI---SSDQELSATPESLEQYYIKIPLDEKLDVLWS 284
>sp|Q4P9E5|SPB4_USTMA ATP-dependent rRNA helicase SPB4 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=SPB4 PE=3 SV=2
Length = 767
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 119/237 (50%), Gaps = 64/237 (27%)
Query: 2 GMIISPTRELSSQIYHVAQPFIS-------------------------------TLPDVK 30
+I+SPTREL+ QIY V F+ T PD
Sbjct: 104 ALIVSPTRELAEQIYKVLVMFLDAQNHAHVQAQQQQDQDEQDEQDEQEAQSDSDTDPDAS 163
Query: 31 SVL----------------------LVGGVEVKA--DVKKIEEEGANLLIGTPGRLYDIM 66
+ L +VGG + D +++ + GA++L+GTPGRL +++
Sbjct: 164 TALNNKRKSSNHLVARKNMISGAQLVVGGSKCTPLDDYRQLRDSGADILVGTPGRLEELL 223
Query: 67 ERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126
+ V +LE+LVLDEADRLLD+GF + + I+S LPK RRTGLFSAT T+A+ EL +
Sbjct: 224 SKKGVKK-SSLEVLVLDEADRLLDLGFTENLRRILSLLPKQRRTGLFSATMTDALSELVR 282
Query: 127 AGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEVIWNVNQMRNHHNLLICL 183
GLRNPVRV V+ E+K H S+S S +TP L N+ Q+ N L L
Sbjct: 283 IGLRNPVRVVVKVEAK-HKTSSSIDD--SRRTPATLQ-----NLYQLCRAQNKLAQL 331
>sp|Q5AF95|DBP4_CANAL ATP-dependent RNA helicase DBP4 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=DBP4 PE=3 SV=1
Length = 765
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 104/170 (61%), Gaps = 8/170 (4%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+I+SPTREL+ QI+ V I + L+ GG +V+ + +++ N+L+GTPGR
Sbjct: 123 ALIVSPTRELAVQIFEVLTK-IGKYNTFSAGLVTGGKDVQFEKERVSR--MNILVGTPGR 179
Query: 62 LYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
+ + ++ NL++LVLDEADR LDMGF+KQI I+ LP R+T LFSATQ+E+V
Sbjct: 180 ISQHLNEAVGMETSNLQVLVLDEADRCLDMGFKKQIDNILGHLPTTRQTLLFSATQSESV 239
Query: 122 EELSKAGLRNPVRVEVRAESKSHHVSASSQQLASS--KTPLGLHLEVIWN 169
+L++ L NP ++ V S VSA+ + L K PL L+V+W+
Sbjct: 240 NDLARLSLTNPNKIGV---SSDQEVSATPESLEQYYVKVPLDEKLDVLWS 286
>sp|A3LX02|SPB4_PICST ATP-dependent rRNA helicase SPB4 OS=Scheffersomyces stipitis
(strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL
Y-11545) GN=SPB4 PE=3 SV=2
Length = 617
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 101/155 (65%), Gaps = 6/155 (3%)
Query: 1 MGMIISPTRELSSQIYHVAQPFISTLPD----VKSVLLVGGVE-VKADVKKIEEEGANLL 55
+ +++SPTREL+SQI V I LP+ +K+ LLVG + V+ D+ + ++ ++L
Sbjct: 95 LAIVLSPTRELASQIQSVFNNVIEYLPEDKIPIKTQLLVGSLSTVRDDLDRFLKDKPHIL 154
Query: 56 IGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115
I TPGR+ D M V ++EI +LDEAD+LLD F+K + I+ RLPK RRTGLFSA
Sbjct: 155 IATPGRMLDFMSSQYV-KMNSVEIAILDEADKLLDFSFEKDVVNILKRLPKQRRTGLFSA 213
Query: 116 TQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASS 150
T + A + +AG+ NPV+V V+++S + + + S+
Sbjct: 214 TISAAGNTIFRAGMNNPVKVAVKSKSTTANSAPSA 248
>sp|O74764|SPB4_SCHPO ATP-dependent rRNA helicase spb4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=spb4 PE=3 SV=1
Length = 606
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 95/150 (63%), Gaps = 12/150 (8%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPD--------VKSVLLVGGVEVKADVKKIEEEGAN 53
+I++PTREL++QI++V + ++ PD V + + G + D+ E+ +
Sbjct: 75 ALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTNDLASFREKNPS 134
Query: 54 LLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLF 113
++IGTPGRL +++ + ++LEIL+LDEAD L+DMGFQ+ + IIS+LPK RRTGLF
Sbjct: 135 VVIGTPGRLNEMLSHISS---KHLEILILDEADTLIDMGFQRTLQSIISQLPKQRRTGLF 191
Query: 114 SATQTEAVEELSK-AGLRNPVRVEVRAESK 142
SAT + V K AGLRN VRV V SK
Sbjct: 192 SATMNDTVSSFLKIAGLRNSVRVSVTVTSK 221
>sp|Q54EC2|DDX55_DICDI Probable ATP-dependent RNA helicase ddx55 OS=Dictyostelium
discoideum GN=ddx55 PE=3 SV=1
Length = 663
Score = 117 bits (292), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 98/195 (50%), Gaps = 47/195 (24%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDV-------------------------------- 29
+IISPTREL+ QI V F++ L +
Sbjct: 86 SIIISPTRELAIQIQQVLLEFLNDLNRIDDQNDLENIKTLEDELLEEQEEEENEKEEEEI 145
Query: 30 -----------KSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM----DVLDF 74
S+LL+GG ++ D+ + G N+LIGTPGR + + R+ F
Sbjct: 146 EKKKKKKKIEISSLLLIGGTDIYQDLVNYKNYGGNILIGTPGRTDEFLTRVVRNDQQFKF 205
Query: 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVR 134
+ E+L+LDEADRLLDMGF I+ I+ +LPK RRTGLFSATQT V+EL++ G+RNP +
Sbjct: 206 KEFEMLILDEADRLLDMGFHLPINSILLKLPKQRRTGLFSATQTSEVKELARTGMRNPFK 265
Query: 135 VEVRAESKSHHVSAS 149
V V + H S
Sbjct: 266 VSVSVKHIETHEDQS 280
>sp|A5E3K3|DBP4_LODEL ATP-dependent RNA helicase DBP4 OS=Lodderomyces elongisporus
(strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 /
NRRL YB-4239) GN=DBP4 PE=3 SV=1
Length = 775
Score = 117 bits (292), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 104/170 (61%), Gaps = 8/170 (4%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+I+SPTREL+ QI+ V I + L+ GG +V+ + ++I N+L+GTPGR
Sbjct: 123 ALIVSPTRELAVQIFEVLAK-IGKYNSFSAGLVTGGKDVQYEKERISR--MNILVGTPGR 179
Query: 62 LYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
+ + ++ NL++LVLDEADR LDMGF+KQI I++ LP+ R+T LFSAT T++V
Sbjct: 180 ISQHLNESVGMETSNLQVLVLDEADRCLDMGFRKQIDNILNHLPRTRQTLLFSATHTDSV 239
Query: 122 EELSKAGLRNPVRVEVRAESKSHHVSASSQQLASS--KTPLGLHLEVIWN 169
++L++ L NP R+ S +SA + L K PL L+V+W+
Sbjct: 240 QDLARLSLTNPKRI---GTSSDQDISAIPESLDQYYVKVPLNEKLDVLWS 286
>sp|Q0UP45|SPB4_PHANO ATP-dependent rRNA helicase SPB4 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=SPB4 PE=3 SV=1
Length = 633
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 108/199 (54%), Gaps = 36/199 (18%)
Query: 2 GMIISPTRELSSQIYHVAQPFIS--------------------------------TLPDV 29
+IISPTREL++QI+ V + TL V
Sbjct: 87 AIIISPTRELATQIHTVLSSLLKFHAPSAAMLEPDDEDTDMEDADTPPKPTFPPGTLKAV 146
Query: 30 KSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRL 88
+LL G V D+ ++ N+LIGTPGRL +++ V + + LV+DEADRL
Sbjct: 147 PQLLLGGSVTPAQDLSAFLKKSPNILIGTPGRLLELLRSPHVHCPQSSFDALVMDEADRL 206
Query: 89 LDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSA 148
LD+GF++ + IISRLPK RRTGLFSA+ +EAV++L + GLRNPVR+ V+ ++++ +
Sbjct: 207 LDLGFKEDLQKIISRLPKQRRTGLFSASMSEAVDQLIRVGLRNPVRIAVKVKARA---TG 263
Query: 149 SSQQLASSKTPLGLHLEVI 167
++ +TP L + +
Sbjct: 264 EDGKIEDKRTPASLQMSYL 282
>sp|Q4HVW2|SPB4_GIBZE ATP-dependent rRNA helicase SPB4 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=SPB4 PE=3
SV=1
Length = 637
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 105/188 (55%), Gaps = 32/188 (17%)
Query: 2 GMIISPTRELSSQIYHV-----------------------AQPFISTLPDVKSVLLVGGV 38
+I+SPTREL++QI+ V +PF +T+P + LLVGG
Sbjct: 90 AIIVSPTRELAAQIHTVLMKLLQFHEASAEILPHLKDDDEKRPF-TTVPAIVPQLLVGGT 148
Query: 39 EVKA-DVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQKQ 96
D++ N+LI +PGRL ++M V + E+LVLDEADRLLD+GF+
Sbjct: 149 TTTVQDLRFFLRHSPNVLISSPGRLVELMSSPHVHCPQSSFEVLVLDEADRLLDLGFKPD 208
Query: 97 ISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASS 156
+ I+S LPK RRTGLFSA+ +EAV E+ + GLRNPV++EV+ + K + L
Sbjct: 209 LQKILSHLPKQRRTGLFSASVSEAVGEIIRVGLRNPVKIEVKVKIKGGGI------LEDR 262
Query: 157 KTPLGLHL 164
KTP L +
Sbjct: 263 KTPASLQM 270
>sp|Q2UHB7|DBP4_ASPOR ATP-dependent RNA helicase dbp4 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=dbp4 PE=3 SV=1
Length = 796
Score = 114 bits (286), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 103/169 (60%), Gaps = 5/169 (2%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+I+SPTREL+ QI+ V + I + L++GG +K + +++ N+L+ TPGR
Sbjct: 120 ALILSPTRELAIQIFEVLRK-IGRYHTFSAGLIIGGKSLKEEQERLGR--MNILVCTPGR 176
Query: 62 LYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
+ +++ + D NL++LVLDEADR+LDMGFQK + I+ LPK R+T LFSATQT+ V
Sbjct: 177 MLQHLDQTAMFDVFNLQMLVLDEADRILDMGFQKTVDAIVGHLPKERQTLLFSATQTKKV 236
Query: 122 EELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEVIWNV 170
+L++ L++P V V + S S Q TPL L+V+W+
Sbjct: 237 SDLARLSLQDPEYVAVHETASSATPSTLQQHYVV--TPLSQKLDVLWSF 283
>sp|Q0CMM5|DBP4_ASPTN ATP-dependent RNA helicase dbp4 OS=Aspergillus terreus (strain NIH
2624 / FGSC A1156) GN=dbp4 PE=3 SV=2
Length = 804
Score = 113 bits (283), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 106/168 (63%), Gaps = 5/168 (2%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+I+SPTREL+ QI+ V + + + L++GG +K + +++ + N+L+ TPGR
Sbjct: 121 ALILSPTRELAIQIFEVLRK-VGRYHHFSAGLVIGGKSLKEEQERLGK--MNILVCTPGR 177
Query: 62 LYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
+ +++ + D NL++LVLDEADR++DMGFQK + II LPK R+T LFSATQT+ V
Sbjct: 178 MLQHLDQTALFDTYNLQMLVLDEADRIMDMGFQKTVDAIIGHLPKERQTMLFSATQTKKV 237
Query: 122 EELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEVIWN 169
+L++ L++P V V + S + S+ Q TPL L+++W+
Sbjct: 238 SDLARLSLQDPEYVAVHEAAAS--ATPSTLQQHYVVTPLPQKLDILWS 283
>sp|A7TJS7|SPB4_VANPO ATP-dependent rRNA helicase SPB4 OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=SPB4 PE=3 SV=1
Length = 607
Score = 113 bits (283), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 95/148 (64%), Gaps = 7/148 (4%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPD----VKSVLLVGG--VEVKADVKKIEEEGANLL 55
+I+SPT+EL+ QI+ V + F+ P+ ++S LLVG V+ DV E +L
Sbjct: 86 SLIVSPTKELAKQIHSVFESFLEHYPENLYPIRSQLLVGTNVKTVRDDVSDFMENKPQIL 145
Query: 56 IGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115
IGTPGR+ D + ++ + +++LDEADRLLD+ F K + I++ LPK RRTGLFSA
Sbjct: 146 IGTPGRILDFL-KIPSVKTSMCSMVILDEADRLLDVSFLKDMENIMNILPKQRRTGLFSA 204
Query: 116 TQTEAVEELSKAGLRNPVRVEVRAESKS 143
T T A + + K GLRNPV+V V ++S++
Sbjct: 205 TITSAGDNIFKTGLRNPVKVTVNSKSQA 232
>sp|Q4WYJ7|SPB4_ASPFU ATP-dependent rRNA helicase spb4 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=spb4
PE=3 SV=2
Length = 640
Score = 113 bits (282), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 96/168 (57%), Gaps = 26/168 (15%)
Query: 2 GMIISPTRELSSQIYHVAQPFI-------------------------STLPDVKSVLLVG 36
+IISPTREL+SQIY+V + STL V +LL G
Sbjct: 90 AIIISPTRELASQIYNVLSSLLAFHPPSAAAINPSEDDDAPRPKFPSSTLKVVPQLLLGG 149
Query: 37 GVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQK 95
D+ + N+L+ TPGRL +++ V + E+LVLDEADRLLD+GF++
Sbjct: 150 STTPAEDLSTFLKRSPNVLVSTPGRLLELLSSPHVHCPQSSFEMLVLDEADRLLDLGFKE 209
Query: 96 QISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKS 143
+ I+ RLPK RRTGLFSA+ +EAV+++ + GLRNPV+V V+ + S
Sbjct: 210 TLQNILRRLPKQRRTGLFSASVSEAVDQIVRVGLRNPVKVMVKVKGGS 257
>sp|A1D699|SPB4_NEOFI ATP-dependent rRNA helicase spb4 OS=Neosartorya fischeri (strain
ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=spb4
PE=3 SV=1
Length = 640
Score = 113 bits (282), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 96/168 (57%), Gaps = 26/168 (15%)
Query: 2 GMIISPTRELSSQIYHVAQPFI-------------------------STLPDVKSVLLVG 36
+IISPTREL+SQIY+V + STL V +LL G
Sbjct: 90 AIIISPTRELASQIYNVLSSLLAFHPPSAAAINPSEDDDAPRPKFPSSTLKVVPQLLLGG 149
Query: 37 GVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQK 95
D+ + N+L+ TPGRL +++ V + E+LVLDEADRLLD+GF++
Sbjct: 150 STTPAEDLSTFLKRSPNVLVSTPGRLLELLSSPHVHCPQSSFEMLVLDEADRLLDLGFKE 209
Query: 96 QISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKS 143
+ I+ RLPK RRTGLFSA+ +EAV+++ + GLRNPV+V V+ + S
Sbjct: 210 TLQNILRRLPKQRRTGLFSASVSEAVDQIVRVGLRNPVKVMVKVKGGS 257
>sp|A2QE29|SPB4_ASPNC ATP-dependent rRNA helicase spb4 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=spb4 PE=3 SV=2
Length = 642
Score = 112 bits (281), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 97/169 (57%), Gaps = 27/169 (15%)
Query: 2 GMIISPTRELSSQIYHV-------------------------AQPFISTLPDVKSVLLVG 36
+IISPTREL+SQIY+V Q F S+ V LL+G
Sbjct: 90 AIIISPTRELASQIYNVLTSLLAFHPPSASTLKPSDDDDDAPRQKFPSSTLKVVPQLLLG 149
Query: 37 GVEVKA-DVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQ 94
G A D+ + NLL+ TPGRL +++ V + E+LV+DEADRLLD+GF+
Sbjct: 150 GSTTPAEDLSTFLKRSPNLLVSTPGRLLELLSSPHVHCPQSSFEMLVMDEADRLLDLGFK 209
Query: 95 KQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKS 143
+ I+ RLPK RRTGLFSA+ +EAV+++ + GLRNPV+V V+ + S
Sbjct: 210 DTLQNILRRLPKQRRTGLFSASVSEAVDQIVRVGLRNPVKVMVKVKGTS 258
>sp|A7F2S3|SPB4_SCLS1 ATP-dependent rRNA helicase spb4 OS=Sclerotinia sclerotiorum
(strain ATCC 18683 / 1980 / Ss-1) GN=spb4 PE=3 SV=1
Length = 625
Score = 112 bits (281), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 107/183 (58%), Gaps = 26/183 (14%)
Query: 2 GMIISPTRELSSQIYHVAQPFI----------------------STLPDVKSVLLVGGVE 39
+I+SPTREL++QI+ V + STL V S LL+GG
Sbjct: 90 AIIVSPTRELATQIHSVLTSLLAFHEPSAGALKPLEEGEKRKPSSTL-RVVSQLLLGGTT 148
Query: 40 VKA-DVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQKQI 97
A D+ + + NLLI TPGRL +++ V + E+LVLDEADRLLD+GF+ +
Sbjct: 149 TPAQDLSRFLKNSPNLLISTPGRLLELLSSPHVHCPQSSFEVLVLDEADRLLDLGFKDDL 208
Query: 98 SYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAE-SKSHHVSASSQQLASS 156
I+SRLPK RRTGLFSA+ +EAV E+ + GLRNPV++ V+ + + ++ +S Q++
Sbjct: 209 QKILSRLPKQRRTGLFSASVSEAVGEIVRVGLRNPVKIAVKVKGAGGDKMTPASLQMSYL 268
Query: 157 KTP 159
TP
Sbjct: 269 LTP 271
>sp|A3GGE9|DBP4_PICST ATP-dependent RNA helicase DBP4 OS=Scheffersomyces stipitis (strain
ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
GN=DBP4 PE=3 SV=2
Length = 765
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 103/170 (60%), Gaps = 8/170 (4%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+I+SPTREL+ Q + V I + L+ GG +V+ + +++ N+L+GTPGR
Sbjct: 122 ALIVSPTRELAVQTFEVLTK-IGKYNTFSAGLVTGGKDVQYEKERVSR--MNILVGTPGR 178
Query: 62 LYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
+ + ++ NL++LVLDEADR LDMGF+KQI I+ LP R+T LFSAT +++V
Sbjct: 179 ISQHLNEAVGMETSNLQVLVLDEADRCLDMGFKKQIDNIVGHLPPTRQTLLFSATVSDSV 238
Query: 122 EELSKAGLRNPVRVEVRAESKSHHVSASSQQLASS--KTPLGLHLEVIWN 169
++L++ L NP R+ V S VSA+ + L + PL L+V+W+
Sbjct: 239 KDLARLSLTNPKRIGV---SSDQDVSATPESLDQYYIRIPLDEKLDVLWS 285
>sp|A5DLF4|DBP4_PICGU ATP-dependent RNA helicase DBP4 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=DBP4 PE=3 SV=2
Length = 754
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 102/168 (60%), Gaps = 4/168 (2%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+I+SPTREL+ Q + V I + L+ GG +VK + ++I N+LIGTPGR
Sbjct: 121 ALIVSPTRELAVQTFEVLTK-IGKYNSFSAGLVTGGKDVKYEKERISR--MNILIGTPGR 177
Query: 62 LYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
+ + ++ NL++LVLDEADR LDMGF+KQI I+ LP R+T LFSATQ++ V
Sbjct: 178 ISQHLNEAVGMETSNLQVLVLDEADRCLDMGFRKQIDNILGHLPVTRQTLLFSATQSDNV 237
Query: 122 EELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEVIWN 169
++L++ L NP RV V ++ + + S +Q K L ++V+W+
Sbjct: 238 KDLARLSLVNPKRVGVSSDQEVSSIPESLEQYY-IKISLASKMDVLWS 284
>sp|A1CL59|SPB4_ASPCL ATP-dependent rRNA helicase spb4 OS=Aspergillus clavatus (strain
ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)
GN=spb4 PE=3 SV=1
Length = 639
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 97/168 (57%), Gaps = 26/168 (15%)
Query: 2 GMIISPTRELSSQIYHVAQPFI-------------------------STLPDVKSVLLVG 36
+IISPTREL+SQI+ V Q + STL V +LL G
Sbjct: 90 AIIISPTRELASQIHSVMQSLLAFHPPSAAAMTPLDDDDAPRQKFPSSTLKVVPQLLLGG 149
Query: 37 GVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQK 95
D+ + + N+L+ TPGRL +++ V + E+LVLDEADRLLD+GF++
Sbjct: 150 STTPAEDLSRFLKLSPNVLVSTPGRLLELLSSPHVHCPQSSFEMLVLDEADRLLDLGFKE 209
Query: 96 QISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKS 143
+ I+ RLPK RRTGLFSA+ +EAV+++ + GLRNPV++ V+ + S
Sbjct: 210 TLQNILRRLPKQRRTGLFSASVSEAVDQIVRVGLRNPVKIMVKVKGTS 257
>sp|A5DGM4|SPB4_PICGU ATP-dependent rRNA helicase SPB4 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=SPB4 PE=3 SV=2
Length = 601
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 96/156 (61%), Gaps = 9/156 (5%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPD----VKSVLLVGGVE-VKADVKKIEEEGANLLI 56
G++ISPTREL++QI V + P+ +K+ L+VG + V+ D+ E ++I
Sbjct: 91 GIVISPTRELANQINTVFHTLLQFYPEDQPPIKTQLIVGSLATVREDLNAFAENKPQIII 150
Query: 57 GTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116
TPGRL D + + +E++VLDEADRLLD+ FQ + I+ +LPK RRTGLFSAT
Sbjct: 151 ATPGRLLDFFSS-NAVKRSTVEMVVLDEADRLLDISFQNDVVSILKKLPKQRRTGLFSAT 209
Query: 117 QTEAVEELSKAGLRNPVRVEV---RAESKSHHVSAS 149
+ A + + + G+ NPV++ V +AESK ++ +
Sbjct: 210 LSSAGDSIFRTGMSNPVKISVNSNKAESKPQSLTVN 245
>sp|A6RMZ2|SPB4_BOTFB ATP-dependent rRNA helicase spb4 OS=Botryotinia fuckeliana (strain
B05.10) GN=spb4 PE=3 SV=1
Length = 626
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 103/183 (56%), Gaps = 25/183 (13%)
Query: 2 GMIISPTRELSSQIYHVA--------------QPF--------ISTLPDVKSVLLVGGVE 39
+I+SPTREL++QI+ V QP STL + +LL G
Sbjct: 90 AIIVSPTRELATQIHSVLTSLLKFHEPSAEALQPLEEGEKRKPSSTLRVIPQLLLGGTTT 149
Query: 40 VKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQKQIS 98
D+ + + NLLI TPGRL +++ V + E+LVLDEADRLLD+GF+ +
Sbjct: 150 PAQDLSRFLKNSPNLLISTPGRLLELLSSPHVHCPQSSFEVLVLDEADRLLDLGFKDDLQ 209
Query: 99 YIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVR--VEVRAESKSHHVSASSQQLASS 156
I+ RLPK RRTGLFSA+ +EAV E+ + GLRNPV+ V+V+ ++ +S Q++
Sbjct: 210 KILGRLPKQRRTGLFSASVSEAVGEIVRVGLRNPVKIAVKVKGAGGGDKMTPASLQMSYL 269
Query: 157 KTP 159
TP
Sbjct: 270 LTP 272
>sp|Q59N29|SPB41_CANAL ATP-dependent rRNA helicase SPB41 OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=SPB41 PE=3 SV=1
Length = 631
Score = 111 bits (277), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 97/159 (61%), Gaps = 6/159 (3%)
Query: 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSV-----LLVGGV-EVKADVKKIEEEGANL 54
+ +++SPTREL++QI V + LP+ K LLVG + V+ D+ + +
Sbjct: 95 LSIVLSPTRELANQIQSVFNQVLQYLPEDKGTRINTQLLVGSIGNVREDLNQFLTNQPQI 154
Query: 55 LIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114
LIGTPGR+ + + + +LEI++LDEAD+LLD F+K + I+ +LPK RRTGLFS
Sbjct: 155 LIGTPGRILEFLGSSQSIKTSSLEIVILDEADKLLDFSFEKDVINILKKLPKQRRTGLFS 214
Query: 115 ATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQL 153
AT + A + + G+ NPV+V+V++++ S S + L
Sbjct: 215 ATISSAGNTIFRTGMNNPVKVQVKSKNYFGEQSNSPKSL 253
>sp|Q59NP8|SPB42_CANAL ATP-dependent rRNA helicase SPB42 OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=SPB42 PE=3 SV=1
Length = 631
Score = 111 bits (277), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 97/159 (61%), Gaps = 6/159 (3%)
Query: 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSV-----LLVGGV-EVKADVKKIEEEGANL 54
+ +++SPTREL++QI V + LP+ K LLVG + V+ D+ + +
Sbjct: 95 LSIVLSPTRELANQIQSVFNQVLQYLPEDKGTRINTQLLVGSIGNVREDLNQFLTNQPQI 154
Query: 55 LIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114
LIGTPGR+ + + + +LEI++LDEAD+LLD F+K + I+ +LPK RRTGLFS
Sbjct: 155 LIGTPGRILEFLGSSQSIKTSSLEIVILDEADKLLDFSFEKDVINILKKLPKQRRTGLFS 214
Query: 115 ATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQL 153
AT + A + + G+ NPV+V+V++++ S S + L
Sbjct: 215 ATISSAGNTIFRTGMNNPVKVQVKSKNYFGEQSNSPKSL 253
>sp|P25808|SPB4_YEAST ATP-dependent rRNA helicase SPB4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SPB4 PE=1 SV=1
Length = 606
Score = 111 bits (277), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 88/148 (59%), Gaps = 7/148 (4%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPD----VKSVLLVGGVE--VKADVKKIEEEGANLL 55
+II+PTRELS QI V F+ P +K LLVG E V+ DV +L
Sbjct: 86 SLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVRDDVSNFLRNRPQIL 145
Query: 56 IGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115
IGTPGR+ D ++ M + ++V+DEADRLLDM F K I+ LPK RRTGLFSA
Sbjct: 146 IGTPGRVLDFLQ-MPAVKTSACSMVVMDEADRLLDMSFIKDTEKILRLLPKQRRTGLFSA 204
Query: 116 TQTEAVEELSKAGLRNPVRVEVRAESKS 143
T A ++ K GLRNPVR+ V +++++
Sbjct: 205 TMRSAGSDIFKTGLRNPVRITVNSKNQA 232
>sp|A7A237|SPB4_YEAS7 ATP-dependent rRNA helicase SPB4 OS=Saccharomyces cerevisiae
(strain YJM789) GN=SPB4 PE=3 SV=1
Length = 606
Score = 111 bits (277), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 88/148 (59%), Gaps = 7/148 (4%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPD----VKSVLLVGGVE--VKADVKKIEEEGANLL 55
+II+PTRELS QI V F+ P +K LLVG E V+ DV +L
Sbjct: 86 SLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVRDDVSNFLRNRPQIL 145
Query: 56 IGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115
IGTPGR+ D ++ M + ++V+DEADRLLDM F K I+ LPK RRTGLFSA
Sbjct: 146 IGTPGRVLDFLQ-MPAVKTSACSMVVMDEADRLLDMSFIKDTEKILRLLPKQRRTGLFSA 204
Query: 116 TQTEAVEELSKAGLRNPVRVEVRAESKS 143
T A ++ K GLRNPVR+ V +++++
Sbjct: 205 TMRSAGSDIFKTGLRNPVRITVNSKNQA 232
>sp|Q1E1R7|SPB4_COCIM ATP-dependent rRNA helicase SPB4 OS=Coccidioides immitis (strain
RS) GN=SPB4 PE=3 SV=2
Length = 653
Score = 111 bits (277), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 94/168 (55%), Gaps = 31/168 (18%)
Query: 2 GMIISPTRELSSQIYHV--------------AQPFIS--------TLPDVKSV------- 32
+I+SPTREL+ QIY V QP S TLP S
Sbjct: 93 AIIVSPTRELAEQIYKVLLSLLAFHAPSAAAIQPSTSDETADGETTLPSYPSSTLKVVPQ 152
Query: 33 LLVGGVEVKA-DVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLD 90
LL+GG A D+ + NL + TPGRL +++ V + E+LVLDEADRLLD
Sbjct: 153 LLLGGATTPAQDLSTFLKRSPNLFVSTPGRLLELLSSPHVHCPQTSFEVLVLDEADRLLD 212
Query: 91 MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVR 138
+GF+ + ++RLPK RRTGLFSAT ++AV+++ + GLRNPV++ V+
Sbjct: 213 LGFKDDLQKTLARLPKQRRTGLFSATVSDAVDQIIRVGLRNPVKIAVK 260
>sp|Q6FKS8|SPB4_CANGA ATP-dependent rRNA helicase SPB4 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=SPB4 PE=3 SV=1
Length = 617
Score = 111 bits (277), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/148 (43%), Positives = 95/148 (64%), Gaps = 7/148 (4%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPD----VKSVLLVGGVE--VKADVKKIEEEGANLL 55
+I++PTRELS QI +V F+ P+ ++S L+VG E V+ DV + +E +L
Sbjct: 86 SLILAPTRELSMQIQNVVSSFLEHYPEDQYPIRSQLVVGTNEKSVRDDVNTLLDERPQIL 145
Query: 56 IGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115
IGTPGR+ D ++ V + ++VLDEADRLLD+ F K + I++ LPK RRTGLFSA
Sbjct: 146 IGTPGRVLDFLQSPSV-KTSSCGMVVLDEADRLLDVSFFKDVEKILNVLPKQRRTGLFSA 204
Query: 116 TQTEAVEELSKAGLRNPVRVEVRAESKS 143
T + A + K GLRNPV++ V ++ K+
Sbjct: 205 TISSAGTLIFKTGLRNPVKITVNSQGKN 232
>sp|A2QS00|DBP4_ASPNC ATP-dependent RNA helicase dbp4 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=dbp4 PE=3 SV=1
Length = 802
Score = 110 bits (276), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 102/168 (60%), Gaps = 5/168 (2%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+++SPTREL+ QI+ V + + + L++GG ++ + +++ N+L+ TPGR
Sbjct: 122 ALVLSPTRELAIQIFEVLRK-VGRYHTFSAGLVIGGKSLREEQERLGR--MNILVCTPGR 178
Query: 62 LYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
+ +++ + NL++LVLDEADR+LDMGFQK + II LPK R+T LFSATQT+ V
Sbjct: 179 MLQHLDQTSFFETHNLQMLVLDEADRILDMGFQKTVDAIIGHLPKERQTLLFSATQTKKV 238
Query: 122 EELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEVIWN 169
+L++ L++P V V + S S Q TPL L+V+W+
Sbjct: 239 SDLARLSLQDPEYVAVHEAASSATPSKLQQHYVV--TPLPQKLDVLWS 284
>sp|Q8SR49|SPB4_ENCCU ATP-dependent rRNA helicase SPB4 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=SPB4 PE=3 SV=1
Length = 463
Score = 110 bits (276), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 95/135 (70%), Gaps = 7/135 (5%)
Query: 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
++I+PTREL+ QI VA F DVK +GG+ ++ D K+++EE ++ +GTPGRL
Sbjct: 80 VVITPTRELALQIREVAGLF-----DVKCECFIGGMSIEEDYKRMKEE-FSIAVGTPGRL 133
Query: 63 YDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122
+I+ + + F +L LVLDEAD+LL GF++++ ++++LP+ R TGLFSAT+ ++V+
Sbjct: 134 LEIVGK-ETKKFSSLSHLVLDEADKLLGFGFEEKLMQLLAKLPRNRVTGLFSATRNDSVD 192
Query: 123 ELSKAGLRNPVRVEV 137
+LS+ LRNPV + V
Sbjct: 193 KLSRVFLRNPVSINV 207
>sp|Q4WM60|DBP4_ASPFU ATP-dependent RNA helicase dbp4 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=dbp4
PE=3 SV=1
Length = 787
Score = 110 bits (276), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 103/169 (60%), Gaps = 5/169 (2%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+I+SPTREL+ QI+ V + I + L++GG +K + +++ N+L+ TPGR
Sbjct: 122 ALILSPTRELAIQIFEVLRK-IGRYHTFSAGLVIGGKSLKEEQERLGR--MNILVCTPGR 178
Query: 62 LYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
+ +++ + D NL++LVLDEADR+LD+GFQ+ + II LPK R+T LFSATQT+ V
Sbjct: 179 MLQHLDQTALFDTYNLQMLVLDEADRILDLGFQQTVDAIIGHLPKERQTLLFSATQTKKV 238
Query: 122 EELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEVIWNV 170
+L++ L++P V V + S S Q TPL L+++W+
Sbjct: 239 SDLARLSLQDPEYVAVHETASSATPSKLQQHYVI--TPLPQKLDILWSF 285
>sp|A1DNF9|DBP4_NEOFI ATP-dependent RNA helicase dbp4 OS=Neosartorya fischeri (strain
ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp4
PE=3 SV=1
Length = 810
Score = 110 bits (275), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 103/169 (60%), Gaps = 5/169 (2%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+I+SPTREL+ QI+ V + I + L++GG +K + +++ N+L+ TPGR
Sbjct: 122 ALILSPTRELAIQIFEVLRK-IGRYHTFSAGLVIGGKSLKEEQERLGR--MNILVCTPGR 178
Query: 62 LYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
+ +++ + D NL++LVLDEADR+LD+GFQ+ + II LPK R+T LFSATQT+ V
Sbjct: 179 MLQHLDQTALFDTYNLQMLVLDEADRILDLGFQQTVDAIIGHLPKERQTLLFSATQTKKV 238
Query: 122 EELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEVIWNV 170
+L++ L++P V V + S S Q TPL L+++W+
Sbjct: 239 SDLARLSLQDPEYVAVHETASSATPSKLQQHYVI--TPLPQKLDILWSF 285
>sp|A7TJ71|DBP4_VANPO ATP-dependent RNA helicase DBP4 OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=DBP4 PE=3 SV=1
Length = 768
Score = 110 bits (275), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 91/130 (70%), Gaps = 3/130 (2%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+IISPTREL+ QIY V I T + L++GG +VK ++++I + N+LIGTPGR
Sbjct: 116 ALIISPTRELAMQIYEVLLK-IGTSTSFSAGLVIGGKDVKFEMERISK--INILIGTPGR 172
Query: 62 LYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
+ M++ L+ NL++LVLDEADR LDMGF+K + I+S LP R+T LFSATQ++++
Sbjct: 173 ILQHMDQAIGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSNLPPTRQTLLFSATQSQSL 232
Query: 122 EELSKAGLRN 131
E+L++ L +
Sbjct: 233 EDLARLSLTD 242
>sp|P34640|DDX55_CAEEL Probable ATP-dependent RNA helicase DDX55 homolog OS=Caenorhabditis
elegans GN=ZK512.2 PE=3 SV=2
Length = 578
Score = 109 bits (273), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 90/145 (62%), Gaps = 4/145 (2%)
Query: 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+I+SP+REL SQI V QPF L ++ + GG +V ++K + + N+L+ TPGR
Sbjct: 83 ALILSPSRELCSQIVSVIQPFAEKL-NLTVETVTGGQKVDKNIKMFKNKNVNILVATPGR 141
Query: 62 LYDIMERMDVL---DFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118
L+ I++ L R L++LV+DEADR ++ F+ + I+S +PK RRTGLFSATQ
Sbjct: 142 LFQIIQHEKTLIARKMRTLQLLVIDEADRFNEIQFEDHMREILSCIPKQRRTGLFSATQV 201
Query: 119 EAVEELSKAGLRNPVRVEVRAESKS 143
+ ++L GLRN +V+V E S
Sbjct: 202 KEEDDLMVFGLRNAKQVKVAQERNS 226
>sp|Q54S03|DDX18_DICDI Probable ATP-dependent RNA helicase ddx18 OS=Dictyostelium
discoideum GN=ddx18 PE=3 SV=1
Length = 602
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 93/139 (66%), Gaps = 3/139 (2%)
Query: 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+IISPTREL+ QIY VA+ + ++ +GG K + +++E+ G NLL+ TPGRL
Sbjct: 195 IIISPTRELALQIYGVARELMKYHTQTHGIV-IGGASKKPEEERLEK-GVNLLVATPGRL 252
Query: 63 YDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122
D ++ +NL+ L++DEADR+L++GF++++ II ++PK R+T LFSATQT V+
Sbjct: 253 LDHLQNTKGFITKNLKCLIIDEADRILEVGFEEEMHQIIKKVPKTRQTMLFSATQTRKVD 312
Query: 123 ELSKAGLRN-PVRVEVRAE 140
+++K L N PV V V E
Sbjct: 313 DIAKVSLNNSPVYVGVDDE 331
>sp|Q0CQF3|SPB4_ASPTN ATP-dependent rRNA helicase spb4 OS=Aspergillus terreus (strain NIH
2624 / FGSC A1156) GN=spb4 PE=3 SV=1
Length = 639
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 95/168 (56%), Gaps = 26/168 (15%)
Query: 2 GMIISPTRELSSQIYHVAQPFI-------------------------STLPDVKSVLLVG 36
+IISPTREL+SQI+ V + STL V +LL G
Sbjct: 90 AIIISPTRELASQIHQVLLSLLAFHPPSAAAIKPPGEDDAPREKFSASTLKVVPQLLLGG 149
Query: 37 GVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQK 95
D+ + N+LI TPGRL +++ V + E+LVLDEADRLLD+GF++
Sbjct: 150 STTPAEDLSYFLKHSPNVLISTPGRLLELLSSPHVHCPQSSFEMLVLDEADRLLDLGFKE 209
Query: 96 QISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKS 143
+ I+ RLPK RRTGLFSA+ +EAV+++ + GLRNPV+V V+ + S
Sbjct: 210 TLQNILRRLPKQRRTGLFSASISEAVDQIVRVGLRNPVKVLVKVKGTS 257
>sp|Q2GV49|SPB4_CHAGB ATP-dependent rRNA helicase SPB4 OS=Chaetomium globosum (strain
ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL
1970) GN=SPB4 PE=3 SV=1
Length = 646
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 94/163 (57%), Gaps = 23/163 (14%)
Query: 2 GMIISPTRELSSQIYHVAQPFI---------------------STLPDVKSVLLVGGVEV 40
+IISPTREL+SQIY+V F+ +T P V LLVGG
Sbjct: 91 AIIISPTRELASQIYNVLVSFLKFHAPSAHLLPHAKGDEKRPATTEPVVVPQLLVGGTTK 150
Query: 41 KA-DVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQKQIS 98
A D+ N+LIGTPGRL +++ V + E+LV+DEADRLLD+GF ++++
Sbjct: 151 AAEDLSTFLRLSPNILIGTPGRLAELLSTPYVKAPSSSFEVLVMDEADRLLDLGFSQELT 210
Query: 99 YIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAES 141
I+ LPK RRTGLFSA+ +EAVE L GL P ++ VR +S
Sbjct: 211 RILGYLPKQRRTGLFSASLSEAVERLITVGLLYPHKITVRVKS 253
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,237,978
Number of Sequences: 539616
Number of extensions: 2268462
Number of successful extensions: 11422
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 195
Number of HSP's that attempted gapping in prelim test: 8245
Number of HSP's gapped (non-prelim): 1271
length of query: 183
length of database: 191,569,459
effective HSP length: 110
effective length of query: 73
effective length of database: 132,211,699
effective search space: 9651454027
effective search space used: 9651454027
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)