Query 030094
Match_columns 183
No_of_seqs 141 out of 1420
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 08:25:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030094.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030094hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330 ATP-dependent RNA heli 100.0 7.9E-38 1.7E-42 251.9 12.5 165 1-182 131-295 (476)
2 KOG0345 ATP-dependent RNA heli 100.0 8.5E-36 1.8E-40 244.8 14.8 168 2-182 82-250 (567)
3 KOG0343 RNA Helicase [RNA proc 100.0 1.4E-35 3E-40 247.6 15.3 164 2-181 144-307 (758)
4 COG0513 SrmB Superfamily II DN 100.0 3.8E-35 8.2E-40 252.3 18.2 166 2-182 102-268 (513)
5 KOG0338 ATP-dependent RNA heli 100.0 8.9E-36 1.9E-40 246.8 13.3 152 2-170 255-406 (691)
6 KOG0328 Predicted ATP-dependen 100.0 4E-35 8.6E-40 228.4 14.7 162 1-180 97-259 (400)
7 KOG0331 ATP-dependent RNA heli 100.0 5.4E-35 1.2E-39 246.2 14.1 166 1-182 167-333 (519)
8 KOG0342 ATP-dependent RNA heli 100.0 7.7E-34 1.7E-38 234.3 15.8 168 1-182 156-324 (543)
9 KOG0339 ATP-dependent RNA heli 100.0 1.3E-33 2.8E-38 234.0 16.4 162 1-180 298-460 (731)
10 KOG0326 ATP-dependent RNA heli 100.0 2E-33 4.3E-38 222.1 10.8 160 1-179 155-314 (459)
11 KOG0329 ATP-dependent RNA heli 100.0 1.3E-33 2.7E-38 217.6 9.1 165 2-182 113-278 (387)
12 KOG0348 ATP-dependent RNA heli 100.0 4.1E-33 8.9E-38 232.1 8.7 181 1-182 213-416 (708)
13 KOG0346 RNA helicase [RNA proc 100.0 3.6E-31 7.7E-36 216.3 13.1 166 1-182 95-262 (569)
14 KOG0335 ATP-dependent RNA heli 100.0 8E-31 1.7E-35 218.2 13.2 164 1-182 154-323 (482)
15 KOG0341 DEAD-box protein abstr 100.0 9E-32 1.9E-36 217.4 5.0 162 1-179 248-414 (610)
16 KOG4284 DEAD box protein [Tran 100.0 9.7E-30 2.1E-34 215.9 14.7 154 1-172 95-249 (980)
17 KOG0333 U5 snRNP-like RNA heli 100.0 8.8E-30 1.9E-34 211.8 13.6 164 1-182 324-512 (673)
18 PRK11634 ATP-dependent RNA hel 100.0 1.5E-28 3.3E-33 215.5 18.6 164 1-181 76-239 (629)
19 PRK11776 ATP-dependent RNA hel 100.0 1.8E-28 3.9E-33 208.9 18.3 163 1-181 74-236 (460)
20 PTZ00110 helicase; Provisional 100.0 2.8E-28 6.1E-33 211.3 18.1 164 1-181 205-369 (545)
21 KOG0327 Translation initiation 100.0 3.3E-29 7.2E-34 201.8 11.3 163 1-180 96-258 (397)
22 KOG0336 ATP-dependent RNA heli 100.0 1.8E-28 3.8E-33 199.5 14.2 159 2-178 297-455 (629)
23 KOG0337 ATP-dependent RNA heli 100.0 3.4E-29 7.3E-34 203.8 9.9 163 2-182 93-255 (529)
24 PRK04837 ATP-dependent RNA hel 100.0 8.8E-28 1.9E-32 202.8 18.1 163 1-181 85-249 (423)
25 PLN00206 DEAD-box ATP-dependen 100.0 1.9E-27 4.1E-32 205.2 18.6 162 1-181 198-359 (518)
26 PRK10590 ATP-dependent RNA hel 100.0 2.8E-27 6.1E-32 201.4 18.2 159 1-177 77-235 (456)
27 KOG0340 ATP-dependent RNA heli 100.0 2.3E-28 4.9E-33 195.5 10.3 165 1-182 77-246 (442)
28 PRK04537 ATP-dependent RNA hel 100.0 4.4E-27 9.5E-32 204.8 17.7 164 1-181 86-251 (572)
29 KOG0334 RNA helicase [RNA proc 99.9 1.2E-27 2.7E-32 211.6 11.4 165 1-182 440-607 (997)
30 KOG0347 RNA helicase [RNA proc 99.9 3.3E-27 7.2E-32 197.5 11.7 165 1-182 265-459 (731)
31 PRK01297 ATP-dependent RNA hel 99.9 9.3E-26 2E-30 193.0 18.5 162 1-179 164-327 (475)
32 PRK11192 ATP-dependent RNA hel 99.9 1.6E-25 3.4E-30 189.5 18.5 153 2-172 76-229 (434)
33 KOG0350 DEAD-box ATP-dependent 99.9 8.7E-26 1.9E-30 187.2 11.4 169 1-181 217-423 (620)
34 KOG0332 ATP-dependent RNA heli 99.9 1.6E-25 3.5E-30 180.2 8.5 159 1-179 162-322 (477)
35 PTZ00424 helicase 45; Provisio 99.9 3.7E-23 8.1E-28 173.1 18.8 153 1-171 98-250 (401)
36 cd00268 DEADc DEAD-box helicas 99.9 1.9E-21 4.1E-26 148.5 16.0 131 2-135 72-202 (203)
37 PRK09401 reverse gyrase; Revie 99.9 6.1E-21 1.3E-25 176.3 16.7 155 1-179 125-321 (1176)
38 TIGR02621 cas3_GSU0051 CRISPR- 99.9 6.7E-21 1.5E-25 169.5 16.0 131 2-140 64-238 (844)
39 PF00270 DEAD: DEAD/DEAH box h 99.8 4.5E-19 9.7E-24 131.2 14.1 121 2-124 47-169 (169)
40 KOG0349 Putative DEAD-box RNA 99.8 2E-19 4.3E-24 148.0 8.3 154 1-171 288-450 (725)
41 PRK14701 reverse gyrase; Provi 99.8 2.7E-18 5.9E-23 162.3 16.1 154 1-174 124-319 (1638)
42 TIGR01054 rgy reverse gyrase. 99.8 4.2E-18 9.2E-23 157.8 14.9 148 1-171 123-313 (1171)
43 TIGR03817 DECH_helic helicase/ 99.8 1.1E-17 2.5E-22 149.6 16.2 129 1-135 83-221 (742)
44 KOG0344 ATP-dependent RNA heli 99.8 3.8E-19 8.2E-24 150.2 5.2 162 1-179 211-379 (593)
45 PRK09751 putative ATP-dependen 99.7 6.7E-17 1.4E-21 151.2 17.8 134 1-136 39-188 (1490)
46 PRK10689 transcription-repair 99.7 1.1E-16 2.4E-21 148.1 16.9 128 1-140 651-781 (1147)
47 TIGR00580 mfd transcription-re 99.7 3.4E-16 7.3E-21 142.3 16.2 128 1-140 502-632 (926)
48 PRK00254 ski2-like helicase; P 99.7 4.1E-16 8.9E-21 139.6 12.9 118 2-127 71-188 (720)
49 PRK10917 ATP-dependent DNA hel 99.7 1.8E-15 3.9E-20 134.6 15.8 114 1-126 312-428 (681)
50 PRK02362 ski2-like helicase; P 99.7 6.7E-16 1.5E-20 138.6 11.9 119 1-127 69-190 (737)
51 PRK13767 ATP-dependent helicas 99.7 7.7E-16 1.7E-20 140.1 11.6 124 1-127 86-226 (876)
52 TIGR01970 DEAH_box_HrpB ATP-de 99.6 1.3E-14 2.7E-19 130.8 16.3 127 1-139 47-175 (819)
53 PHA02653 RNA helicase NPH-II; 99.6 5.4E-15 1.2E-19 130.6 13.7 125 1-138 224-351 (675)
54 PRK11664 ATP-dependent RNA hel 99.6 1.1E-14 2.4E-19 131.2 15.8 126 1-138 50-177 (812)
55 TIGR00643 recG ATP-dependent D 99.6 1.2E-14 2.7E-19 128.3 13.4 113 1-124 286-403 (630)
56 PRK01172 ski2-like helicase; P 99.6 1.4E-14 3E-19 129.0 12.3 119 1-127 67-188 (674)
57 smart00487 DEXDc DEAD-like hel 99.6 3E-13 6.6E-18 101.1 16.2 136 2-139 57-192 (201)
58 TIGR00614 recQ_fam ATP-depende 99.6 1E-13 2.3E-18 118.7 14.8 130 1-136 53-193 (470)
59 PRK12899 secA preprotein trans 99.5 1.2E-13 2.7E-18 123.7 9.6 83 2-89 138-228 (970)
60 PLN03137 ATP-dependent DNA hel 99.5 1.9E-12 4E-17 118.4 16.8 125 1-130 502-639 (1195)
61 COG1204 Superfamily II helicas 99.5 3.6E-13 7.8E-18 120.6 11.3 124 2-133 79-205 (766)
62 COG1205 Distinct helicase fami 99.5 1.7E-12 3.7E-17 117.6 15.6 133 1-136 117-260 (851)
63 COG1111 MPH1 ERCC4-like helica 99.5 8E-13 1.7E-17 110.9 12.2 131 2-136 61-194 (542)
64 PHA02558 uvsW UvsW helicase; P 99.4 4.4E-13 9.6E-18 115.7 10.0 103 1-120 160-262 (501)
65 PRK11057 ATP-dependent DNA hel 99.4 5.9E-12 1.3E-16 111.0 15.1 128 1-135 67-204 (607)
66 COG1202 Superfamily II helicas 99.4 8.9E-13 1.9E-17 112.2 9.0 152 3-178 265-423 (830)
67 TIGR01389 recQ ATP-dependent D 99.4 7.5E-12 1.6E-16 110.1 15.0 123 1-130 55-185 (591)
68 PRK13766 Hef nuclease; Provisi 99.4 1.5E-11 3.3E-16 111.2 14.5 123 2-128 61-186 (773)
69 PRK13104 secA preprotein trans 99.3 5.9E-12 1.3E-16 113.0 10.1 85 1-89 125-215 (896)
70 TIGR03158 cas3_cyano CRISPR-as 99.3 9.2E-11 2E-15 97.3 16.5 134 2-135 42-211 (357)
71 TIGR01587 cas3_core CRISPR-ass 99.3 5.4E-12 1.2E-16 104.4 9.1 125 2-131 32-179 (358)
72 COG1201 Lhr Lhr-like helicases 99.3 9E-12 2E-16 111.2 10.5 131 1-136 75-213 (814)
73 TIGR00963 secA preprotein tran 99.3 5.5E-12 1.2E-16 111.6 8.9 86 1-90 99-190 (745)
74 cd00046 DEXDc DEAD-like helica 99.3 8.1E-11 1.7E-15 83.0 13.4 112 2-117 33-144 (144)
75 PRK11131 ATP-dependent RNA hel 99.3 5E-11 1.1E-15 110.9 12.1 115 8-139 131-247 (1294)
76 PF06862 DUF1253: Protein of u 99.3 2.1E-10 4.7E-15 96.6 14.6 160 2-170 40-271 (442)
77 PRK05580 primosome assembly pr 99.2 1.7E-10 3.8E-15 102.8 13.5 112 1-125 192-312 (679)
78 PRK12898 secA preprotein trans 99.2 1.9E-10 4.2E-15 101.1 12.0 85 1-89 146-255 (656)
79 PRK09200 preprotein translocas 99.2 8.2E-11 1.8E-15 105.3 9.5 86 1-89 121-212 (790)
80 TIGR03714 secA2 accessory Sec 99.1 2.2E-10 4.7E-15 102.0 9.6 86 2-89 114-208 (762)
81 COG1200 RecG RecG-like helicas 99.1 1.3E-09 2.8E-14 94.9 12.6 114 1-126 313-430 (677)
82 KOG0952 DNA/RNA helicase MER3/ 99.1 8.7E-10 1.9E-14 99.3 10.6 148 2-172 167-325 (1230)
83 PRK12904 preprotein translocas 99.1 7E-10 1.5E-14 99.5 9.1 84 2-89 125-214 (830)
84 TIGR00595 priA primosomal prot 99.0 5.7E-09 1.2E-13 90.3 13.3 112 1-125 27-147 (505)
85 COG4581 Superfamily II RNA hel 99.0 6.8E-09 1.5E-13 94.7 12.1 140 2-169 165-307 (1041)
86 KOG0354 DEAD-box like helicase 98.9 7.6E-09 1.6E-13 91.3 9.8 124 2-130 109-234 (746)
87 PRK13107 preprotein translocas 98.9 4E-09 8.7E-14 94.9 7.7 85 2-90 126-216 (908)
88 COG1197 Mfd Transcription-repa 98.9 1.4E-08 3E-13 93.0 10.8 128 1-140 645-775 (1139)
89 KOG2340 Uncharacterized conser 98.9 2.8E-09 6.1E-14 90.3 5.9 131 2-133 296-495 (698)
90 KOG0951 RNA helicase BRR2, DEA 98.8 3E-08 6.6E-13 91.0 8.5 154 2-177 367-528 (1674)
91 TIGR01967 DEAH_box_HrpA ATP-de 98.7 2.9E-07 6.4E-12 86.4 14.8 120 5-138 117-239 (1283)
92 KOG0947 Cytoplasmic exosomal R 98.7 7.9E-08 1.7E-12 86.3 9.0 138 2-169 343-481 (1248)
93 PF14617 CMS1: U3-containing 9 98.5 2.5E-07 5.4E-12 73.0 6.2 82 2-86 129-211 (252)
94 PF04851 ResIII: Type III rest 98.5 7.4E-07 1.6E-11 66.1 8.3 110 2-118 53-183 (184)
95 KOG0948 Nuclear exosomal RNA h 98.4 4.4E-07 9.5E-12 80.0 6.7 135 2-168 175-312 (1041)
96 PRK09694 helicase Cas3; Provis 98.4 1.8E-06 3.9E-11 78.9 10.5 125 2-127 334-491 (878)
97 COG1110 Reverse gyrase [DNA re 98.4 2E-06 4.3E-11 78.1 10.4 87 2-91 128-218 (1187)
98 COG1061 SSL2 DNA or RNA helica 98.4 1.2E-06 2.7E-11 74.7 8.7 102 2-119 83-185 (442)
99 TIGR00603 rad25 DNA repair hel 98.4 2E-06 4.3E-11 77.0 8.8 106 2-119 301-413 (732)
100 COG0514 RecQ Superfamily II DN 98.3 5.9E-06 1.3E-10 72.1 11.1 128 2-136 60-197 (590)
101 TIGR00348 hsdR type I site-spe 98.2 1.2E-05 2.7E-10 71.9 10.7 107 2-119 296-404 (667)
102 PF07652 Flavi_DEAD: Flaviviru 98.2 7.8E-06 1.7E-10 59.1 7.1 106 2-124 36-143 (148)
103 PRK11448 hsdR type I restricti 98.0 2.6E-05 5.6E-10 73.3 8.9 113 2-120 466-597 (1123)
104 PF00176 SNF2_N: SNF2 family N 98.0 2.5E-05 5.5E-10 62.4 7.0 110 2-117 61-172 (299)
105 PRK13103 secA preprotein trans 97.9 3.8E-05 8.2E-10 69.9 8.1 85 1-89 125-215 (913)
106 KOG0949 Predicted helicase, DE 97.9 3.6E-05 7.8E-10 70.0 7.3 114 2-120 559-674 (1330)
107 PLN03142 Probable chromatin-re 97.8 0.00028 6.1E-09 65.7 11.6 107 2-118 222-330 (1033)
108 KOG0385 Chromatin remodeling c 97.7 0.0004 8.7E-09 62.0 10.3 111 3-123 221-334 (971)
109 PRK07246 bifunctional ATP-depe 97.7 0.00051 1.1E-08 63.0 10.8 87 1-90 293-450 (820)
110 TIGR03117 cas_csf4 CRISPR-asso 97.6 0.00064 1.4E-08 60.5 10.4 40 50-90 181-220 (636)
111 KOG0351 ATP-dependent DNA heli 97.5 0.0028 6.1E-08 58.7 12.9 129 2-136 307-451 (941)
112 KOG0352 ATP-dependent DNA heli 97.4 0.00058 1.3E-08 57.5 7.2 130 1-138 63-209 (641)
113 PRK12326 preprotein translocas 97.3 0.00081 1.7E-08 60.3 7.2 85 1-89 121-211 (764)
114 PRK12906 secA preprotein trans 97.3 0.00091 2E-08 60.7 7.2 85 1-89 123-213 (796)
115 PRK04914 ATP-dependent helicas 97.2 0.0016 3.4E-08 60.6 8.3 126 2-135 202-335 (956)
116 KOG0389 SNF2 family DNA-depend 97.2 0.0048 1E-07 55.5 10.7 116 3-126 452-572 (941)
117 PRK12902 secA preprotein trans 97.2 0.0017 3.6E-08 59.4 7.9 84 2-89 129-218 (939)
118 PRK14873 primosome assembly pr 97.1 0.0034 7.4E-08 56.3 9.6 113 1-125 190-311 (665)
119 KOG0950 DNA polymerase theta/e 97.1 0.00093 2E-08 60.9 5.7 113 2-120 272-390 (1008)
120 KOG0387 Transcription-coupled 97.1 0.0042 9E-08 55.9 9.6 115 2-126 258-385 (923)
121 PF07517 SecA_DEAD: SecA DEAD- 97.0 0.0065 1.4E-07 48.6 9.4 84 2-89 121-210 (266)
122 CHL00122 secA preprotein trans 97.0 0.0025 5.5E-08 58.1 7.0 84 2-89 120-209 (870)
123 TIGR01407 dinG_rel DnaQ family 96.9 0.0083 1.8E-07 55.5 10.4 39 51-90 416-454 (850)
124 COG1198 PriA Primosomal protei 96.9 0.013 2.7E-07 53.1 11.2 112 1-125 247-367 (730)
125 COG1643 HrpA HrpA-like helicas 96.9 0.027 5.8E-07 51.8 13.3 83 50-137 138-222 (845)
126 KOG0353 ATP-dependent DNA heli 96.9 0.017 3.7E-07 48.2 10.8 122 1-127 136-270 (695)
127 COG4096 HsdR Type I site-speci 96.8 0.003 6.5E-08 57.0 6.5 103 2-121 218-324 (875)
128 KOG0920 ATP-dependent RNA heli 96.8 0.023 4.9E-07 52.5 12.1 122 5-139 225-348 (924)
129 COG4098 comFA Superfamily II D 96.8 0.018 3.8E-07 47.5 10.3 102 3-124 148-250 (441)
130 COG1203 CRISPR-associated heli 96.6 0.0071 1.5E-07 55.0 7.3 136 2-138 249-401 (733)
131 KOG0391 SNF2 family DNA-depend 96.5 0.0095 2.1E-07 55.9 7.2 108 3-120 669-779 (1958)
132 PRK10689 transcription-repair 96.4 0.057 1.2E-06 51.5 12.2 78 1-88 811-891 (1147)
133 TIGR00596 rad1 DNA repair prot 96.4 0.015 3.2E-07 53.4 7.8 89 51-140 7-101 (814)
134 KOG4439 RNA polymerase II tran 96.3 0.0058 1.3E-07 54.4 4.4 126 2-134 386-521 (901)
135 TIGR00580 mfd transcription-re 96.2 0.026 5.6E-07 52.6 8.7 78 1-88 662-742 (926)
136 KOG0392 SNF2 family DNA-depend 96.1 0.034 7.4E-07 52.5 8.6 119 2-131 1034-1156(1549)
137 COG0610 Type I site-specific r 96.0 0.06 1.3E-06 50.5 10.2 108 2-118 306-414 (962)
138 KOG3089 Predicted DEAD-box-con 96.0 0.014 3E-07 45.0 4.8 44 41-85 186-229 (271)
139 KOG0922 DEAH-box RNA helicase 95.7 0.38 8.2E-06 42.9 13.0 83 51-139 140-224 (674)
140 TIGR00631 uvrb excinuclease AB 95.6 0.34 7.4E-06 43.7 12.6 114 2-127 445-563 (655)
141 TIGR02562 cas3_yersinia CRISPR 95.5 0.022 4.8E-07 53.2 5.0 72 51-123 562-640 (1110)
142 PRK04837 ATP-dependent RNA hel 95.4 0.09 2E-06 44.6 8.0 71 1-83 257-330 (423)
143 PRK04537 ATP-dependent RNA hel 95.3 0.15 3.1E-06 45.3 9.4 73 1-85 259-334 (572)
144 TIGR00643 recG ATP-dependent D 95.3 0.37 8E-06 43.2 11.9 81 1-88 450-538 (630)
145 PRK10917 ATP-dependent DNA hel 95.2 0.39 8.5E-06 43.5 11.9 81 1-88 473-561 (681)
146 PF02399 Herpes_ori_bp: Origin 95.0 0.59 1.3E-05 42.9 12.3 123 2-137 81-211 (824)
147 COG0513 SrmB Superfamily II DN 94.8 0.18 3.8E-06 44.2 8.5 69 1-81 275-346 (513)
148 TIGR00614 recQ_fam ATP-depende 94.8 0.19 4.1E-06 43.4 8.4 73 2-86 229-304 (470)
149 PRK10590 ATP-dependent RNA hel 94.8 0.22 4.8E-06 42.8 8.8 70 1-82 247-319 (456)
150 PRK11192 ATP-dependent RNA hel 94.6 0.18 3.9E-06 42.9 7.8 69 2-82 248-319 (434)
151 PRK05580 primosome assembly pr 94.6 0.85 1.8E-05 41.4 12.3 98 11-118 438-550 (679)
152 PRK11776 ATP-dependent RNA hel 94.5 0.2 4.3E-06 43.0 7.9 72 2-85 245-319 (460)
153 PRK11634 ATP-dependent RNA hel 94.3 0.28 6.1E-06 44.0 8.6 70 1-82 247-319 (629)
154 PRK01297 ATP-dependent RNA hel 94.1 0.31 6.8E-06 42.0 8.3 71 1-83 337-410 (475)
155 PRK08074 bifunctional ATP-depe 94.0 0.53 1.1E-05 44.2 10.1 39 51-90 431-469 (928)
156 PTZ00110 helicase; Provisional 94.0 0.35 7.5E-06 42.7 8.5 69 2-82 380-451 (545)
157 PRK05298 excinuclease ABC subu 94.0 1.2 2.5E-05 40.3 11.9 75 2-88 449-526 (652)
158 KOG0951 RNA helicase BRR2, DEA 93.8 0.26 5.7E-06 47.0 7.5 111 2-124 1189-1305(1674)
159 PTZ00424 helicase 45; Provisio 93.7 0.35 7.6E-06 40.5 7.8 70 2-83 270-342 (401)
160 KOG1001 Helicase-like transcri 93.7 0.25 5.5E-06 44.6 7.1 110 2-126 192-302 (674)
161 COG4098 comFA Superfamily II D 93.6 3.2 7E-05 34.6 12.6 111 2-125 308-424 (441)
162 PLN00206 DEAD-box ATP-dependen 93.6 0.47 1E-05 41.5 8.5 71 2-83 370-443 (518)
163 PRK11057 ATP-dependent DNA hel 93.5 0.45 9.7E-06 42.5 8.3 71 2-84 239-312 (607)
164 cd00079 HELICc Helicase superf 93.4 1.1 2.5E-05 30.5 8.9 74 2-87 31-107 (131)
165 PRK15483 type III restriction- 93.3 0.5 1.1E-05 44.3 8.4 114 2-119 92-240 (986)
166 TIGR00595 priA primosomal prot 93.2 0.95 2.1E-05 39.6 9.8 97 13-119 272-383 (505)
167 TIGR01389 recQ ATP-dependent D 93.1 0.59 1.3E-05 41.6 8.5 71 2-84 227-300 (591)
168 KOG1123 RNA polymerase II tran 93.1 0.32 7E-06 42.3 6.4 109 2-122 348-463 (776)
169 PRK12903 secA preprotein trans 93.1 0.37 8.1E-06 44.5 7.1 84 2-89 122-211 (925)
170 PRK13767 ATP-dependent helicas 93.0 0.85 1.8E-05 42.6 9.7 76 2-84 287-366 (876)
171 COG0556 UvrB Helicase subunit 93.0 1.5 3.3E-05 38.5 10.3 110 2-126 449-566 (663)
172 KOG0344 ATP-dependent RNA heli 92.9 1.8 3.9E-05 38.1 10.7 75 2-87 390-467 (593)
173 PF13872 AAA_34: P-loop contai 92.6 0.15 3.2E-06 41.5 3.6 114 2-125 94-228 (303)
174 COG1197 Mfd Transcription-repa 92.3 1.3 2.9E-05 42.1 9.7 104 1-118 805-911 (1139)
175 KOG4150 Predicted ATP-dependen 92.2 0.31 6.7E-06 43.1 5.3 147 3-170 335-497 (1034)
176 PF02463 SMC_N: RecF/RecN/SMC 92.0 0.21 4.6E-06 38.3 3.8 41 75-115 157-197 (220)
177 TIGR01970 DEAH_box_HrpB ATP-de 91.9 1.1 2.4E-05 41.6 8.8 71 2-81 212-285 (819)
178 KOG0390 DNA repair protein, SN 91.9 3.8 8.3E-05 37.7 11.9 126 2-135 301-434 (776)
179 KOG0386 Chromatin remodeling c 91.8 0.24 5.3E-06 46.1 4.4 106 3-117 448-554 (1157)
180 PHA02653 RNA helicase NPH-II; 91.7 0.83 1.8E-05 41.4 7.7 70 2-81 398-469 (675)
181 KOG1002 Nucleotide excision re 91.7 0.97 2.1E-05 39.4 7.6 116 2-126 234-364 (791)
182 TIGR01054 rgy reverse gyrase. 91.6 0.72 1.6E-05 44.4 7.4 73 1-82 328-404 (1171)
183 TIGR03158 cas3_cyano CRISPR-as 91.6 1.5 3.3E-05 36.5 8.6 68 2-83 275-342 (357)
184 KOG0331 ATP-dependent RNA heli 91.6 1 2.2E-05 39.4 7.7 84 2-105 344-430 (519)
185 KOG0333 U5 snRNP-like RNA heli 91.5 1.1 2.5E-05 39.2 7.8 68 2-81 520-590 (673)
186 PF09848 DUF2075: Uncharacteri 91.4 2.3 5.1E-05 35.2 9.6 73 55-128 63-149 (352)
187 COG1198 PriA Primosomal protei 91.3 3.1 6.7E-05 38.1 10.8 69 13-91 494-567 (730)
188 TIGR03817 DECH_helic helicase/ 91.2 1.2 2.6E-05 40.9 8.3 78 1-85 273-356 (742)
189 KOG0925 mRNA splicing factor A 91.0 0.65 1.4E-05 40.3 5.9 78 57-138 133-219 (699)
190 KOG0384 Chromodomain-helicase 91.0 1.6 3.5E-05 41.7 8.8 125 3-137 424-557 (1373)
191 PRK11664 ATP-dependent RNA hel 90.7 1.5 3.3E-05 40.6 8.5 71 2-81 215-288 (812)
192 PF06733 DEAD_2: DEAD_2; Inte 90.7 0.19 4.2E-06 37.3 2.3 38 51-90 119-159 (174)
193 COG1200 RecG RecG-like helicas 90.5 0.68 1.5E-05 41.5 5.8 96 1-107 475-578 (677)
194 PF13401 AAA_22: AAA domain; P 90.5 0.26 5.7E-06 34.2 2.7 36 78-115 89-124 (131)
195 KOG1000 Chromatin remodeling p 90.4 1.8 3.9E-05 37.8 8.0 103 3-117 245-348 (689)
196 TIGR01587 cas3_core CRISPR-ass 90.3 1.5 3.2E-05 36.2 7.4 72 1-83 224-302 (358)
197 PLN03137 ATP-dependent DNA hel 89.5 1.7 3.8E-05 41.5 7.8 69 2-82 683-754 (1195)
198 PRK09694 helicase Cas3; Provis 89.5 2.4 5.2E-05 39.7 8.7 74 2-85 563-647 (878)
199 COG4889 Predicted helicase [Ge 89.2 2.3 5.1E-05 39.8 8.1 86 2-90 209-318 (1518)
200 smart00489 DEXDc3 DEAD-like he 89.1 0.37 8.1E-06 39.0 2.9 39 51-90 211-250 (289)
201 smart00488 DEXDc2 DEAD-like he 89.1 0.37 8.1E-06 39.0 2.9 39 51-90 211-250 (289)
202 PRK09401 reverse gyrase; Revie 89.0 1.1 2.4E-05 43.2 6.4 72 1-82 330-405 (1176)
203 PRK12900 secA preprotein trans 88.4 0.94 2E-05 42.5 5.3 84 2-89 182-271 (1025)
204 KOG0332 ATP-dependent RNA heli 88.4 2.9 6.3E-05 35.2 7.6 122 1-136 332-464 (477)
205 PRK11747 dinG ATP-dependent DN 88.3 0.58 1.3E-05 42.6 3.9 41 50-90 218-260 (697)
206 PRK12422 chromosomal replicati 88.2 12 0.00026 32.3 11.6 120 5-124 115-252 (445)
207 KOG0354 DEAD-box like helicase 88.0 2.7 5.8E-05 38.4 7.7 75 2-85 416-501 (746)
208 KOG0328 Predicted ATP-dependen 87.8 3.3 7.1E-05 33.7 7.3 69 1-81 268-339 (400)
209 KOG0388 SNF2 family DNA-depend 87.4 2 4.4E-05 39.2 6.5 106 3-118 621-734 (1185)
210 PF13086 AAA_11: AAA domain; P 87.0 2.5 5.5E-05 31.9 6.3 35 50-89 169-205 (236)
211 KOG0964 Structural maintenance 86.8 0.91 2E-05 42.3 4.1 51 78-130 1121-1171(1200)
212 KOG0989 Replication factor C, 86.6 1.1 2.5E-05 36.6 4.2 53 75-128 128-183 (346)
213 PRK05642 DNA replication initi 86.1 9.6 0.00021 29.7 9.2 69 50-119 72-141 (234)
214 PRK01172 ski2-like helicase; P 86.0 6.4 0.00014 35.6 9.2 77 1-85 238-337 (674)
215 TIGR00708 cobA cob(I)alamin ad 86.0 1.7 3.8E-05 32.5 4.7 54 74-127 95-150 (173)
216 KOG2170 ATPase of the AAA+ sup 85.9 1.2 2.7E-05 36.3 4.1 58 74-132 176-240 (344)
217 KOG0991 Replication factor C, 85.7 1.9 4.2E-05 34.2 4.9 44 74-118 111-154 (333)
218 COG0553 HepA Superfamily II DN 85.4 4.8 0.0001 37.0 8.3 85 2-90 393-486 (866)
219 PRK11131 ATP-dependent RNA hel 85.4 4.8 0.0001 39.2 8.3 71 2-81 289-360 (1294)
220 cd00561 CobA_CobO_BtuR ATP:cor 85.1 2.2 4.8E-05 31.5 4.8 54 74-127 93-148 (159)
221 KOG0926 DEAH-box RNA helicase 85.1 5.9 0.00013 36.8 8.2 65 50-118 348-425 (1172)
222 PRK09751 putative ATP-dependen 84.9 6.5 0.00014 39.0 9.0 75 1-82 246-351 (1490)
223 TIGR01967 DEAH_box_HrpA ATP-de 84.8 5.4 0.00012 38.9 8.4 71 2-81 282-353 (1283)
224 PF03354 Terminase_1: Phage Te 84.7 2.2 4.8E-05 37.0 5.5 104 2-115 57-161 (477)
225 PF13604 AAA_30: AAA domain; P 84.7 15 0.00032 27.7 9.7 39 74-116 91-130 (196)
226 PF05127 Helicase_RecD: Helica 84.4 0.74 1.6E-05 34.6 2.1 96 2-118 29-124 (177)
227 PF05621 TniB: Bacterial TniB 84.3 1.4 2.9E-05 36.0 3.7 42 74-115 143-186 (302)
228 PRK05986 cob(I)alamin adenolsy 84.1 2.4 5.2E-05 32.2 4.8 55 74-128 113-169 (191)
229 PRK13766 Hef nuclease; Provisi 83.8 8.1 0.00017 35.5 8.9 83 2-100 368-461 (773)
230 PRK12901 secA preprotein trans 83.8 1.8 3.9E-05 41.0 4.6 85 2-89 213-303 (1112)
231 KOG0923 mRNA splicing factor A 83.8 7.3 0.00016 35.4 8.1 76 54-134 358-435 (902)
232 TIGR01447 recD exodeoxyribonuc 83.6 6 0.00013 35.4 7.7 37 74-114 257-293 (586)
233 PRK07414 cob(I)yrinic acid a,c 83.6 2.5 5.5E-05 31.8 4.6 54 74-127 113-168 (178)
234 PRK10875 recD exonuclease V su 83.2 6.9 0.00015 35.2 8.0 37 74-114 263-299 (615)
235 PF02572 CobA_CobO_BtuR: ATP:c 82.8 2.4 5.2E-05 31.7 4.3 55 73-127 93-149 (172)
236 PRK04914 ATP-dependent helicas 82.6 8.9 0.00019 36.4 8.7 73 2-85 496-573 (956)
237 KOG0327 Translation initiation 81.7 5.8 0.00013 33.4 6.4 70 1-82 265-337 (397)
238 COG1196 Smc Chromosome segrega 81.6 2 4.2E-05 41.5 4.2 67 49-115 1047-1127(1163)
239 TIGR03420 DnaA_homol_Hda DnaA 80.8 22 0.00048 26.9 9.7 45 75-119 89-134 (226)
240 COG1111 MPH1 ERCC4-like helica 80.7 13 0.00028 32.6 8.3 73 2-85 369-452 (542)
241 PRK06893 DNA replication initi 80.7 4.2 9.1E-05 31.5 5.1 47 74-120 89-137 (229)
242 TIGR02621 cas3_GSU0051 CRISPR- 80.6 10 0.00022 35.4 8.2 70 1-85 274-362 (844)
243 PHA02544 44 clamp loader, smal 80.0 3.7 8E-05 33.2 4.8 41 75-115 99-139 (316)
244 COG4555 NatA ABC-type Na+ tran 79.9 3.8 8.3E-05 31.8 4.5 55 74-128 149-203 (245)
245 KOG0952 DNA/RNA helicase MER3/ 79.9 1.2 2.6E-05 42.0 2.0 119 2-127 976-1102(1230)
246 KOG1556 26S proteasome regulat 79.6 8.5 0.00018 30.5 6.3 55 87-141 69-129 (309)
247 KOG0924 mRNA splicing factor A 79.6 23 0.00049 32.6 9.6 74 53-132 447-523 (1042)
248 PHA02558 uvsW UvsW helicase; P 79.3 10 0.00022 33.1 7.5 71 2-83 347-420 (501)
249 COG1110 Reverse gyrase [DNA re 79.1 5.5 0.00012 37.8 5.9 74 2-85 338-415 (1187)
250 COG2109 BtuR ATP:corrinoid ade 79.1 6.3 0.00014 30.0 5.3 54 75-128 121-176 (198)
251 COG1203 CRISPR-associated heli 78.9 6.9 0.00015 36.0 6.6 53 2-59 443-502 (733)
252 PF13173 AAA_14: AAA domain 78.7 4.9 0.00011 28.0 4.5 40 76-118 61-100 (128)
253 PRK08084 DNA replication initi 77.8 26 0.00056 27.2 8.8 90 28-119 44-142 (235)
254 PRK14701 reverse gyrase; Provi 77.8 5.7 0.00012 39.8 6.0 75 1-82 332-407 (1638)
255 PF15586 Imm47: Immunity prote 77.4 6.6 0.00014 27.4 4.7 50 51-105 44-93 (116)
256 KOG0298 DEAD box-containing he 77.0 10 0.00023 36.7 7.2 116 2-126 423-559 (1394)
257 KOG0335 ATP-dependent RNA heli 76.9 9.2 0.0002 33.2 6.4 108 2-125 340-453 (482)
258 COG1201 Lhr Lhr-like helicases 76.4 23 0.0005 33.0 9.1 86 2-106 256-344 (814)
259 PF00308 Bac_DnaA: Bacterial d 75.8 15 0.00033 28.3 6.9 115 5-122 12-145 (219)
260 PRK00254 ski2-like helicase; P 75.6 19 0.00041 33.0 8.5 76 1-83 240-346 (720)
261 PRK02362 ski2-like helicase; P 75.6 18 0.00039 33.2 8.3 75 1-82 245-353 (737)
262 COG0497 RecN ATPase involved i 75.3 3.5 7.7E-05 36.4 3.6 51 76-128 453-503 (557)
263 COG1199 DinG Rad3-related DNA 75.1 3.3 7.1E-05 37.3 3.5 40 50-90 193-234 (654)
264 PRK08903 DnaA regulatory inact 75.1 35 0.00075 26.1 10.6 86 28-119 41-133 (227)
265 PF02562 PhoH: PhoH-like prote 74.9 5.5 0.00012 30.6 4.2 35 78-116 121-155 (205)
266 PF13177 DNA_pol3_delta2: DNA 74.5 6.8 0.00015 28.7 4.5 65 51-117 67-142 (162)
267 PF13514 AAA_27: AAA domain 74.4 7.3 0.00016 37.5 5.8 55 79-135 1054-1108(1111)
268 PRK10536 hypothetical protein; 74.2 4.9 0.00011 32.1 3.8 34 78-115 178-211 (262)
269 TIGR00604 rad3 DNA repair heli 73.9 2.1 4.6E-05 39.0 1.9 39 51-90 195-234 (705)
270 KOG0990 Replication factor C, 72.7 5.2 0.00011 33.1 3.7 38 76-114 131-168 (360)
271 PRK06835 DNA replication prote 72.7 53 0.0012 27.1 12.2 130 8-138 161-315 (329)
272 PLN03025 replication factor C 72.5 6.3 0.00014 32.2 4.3 39 75-114 98-136 (319)
273 COG4408 Uncharacterized protei 72.4 50 0.0011 27.7 9.2 132 3-139 7-147 (431)
274 PRK07764 DNA polymerase III su 72.1 6.7 0.00015 36.6 4.7 46 75-122 119-164 (824)
275 COG1435 Tdk Thymidine kinase [ 72.1 20 0.00042 27.5 6.5 50 52-104 60-109 (201)
276 PF02302 PTS_IIB: PTS system, 72.1 15 0.00033 23.5 5.4 56 2-62 2-58 (90)
277 PF00004 AAA: ATPase family as 71.7 9.5 0.00021 25.9 4.5 16 77-92 59-74 (132)
278 KOG0350 DEAD-box ATP-dependent 70.7 15 0.00034 32.2 6.2 72 2-81 432-506 (620)
279 PRK10869 recombination and rep 69.3 6.9 0.00015 34.7 4.1 40 76-115 452-491 (553)
280 PRK08727 hypothetical protein; 69.3 10 0.00022 29.4 4.7 91 30-121 42-140 (233)
281 PRK06620 hypothetical protein; 69.0 50 0.0011 25.3 10.0 125 4-140 19-147 (214)
282 PRK04195 replication factor C 68.3 80 0.0017 27.4 10.9 80 10-90 21-112 (482)
283 KOG0340 ATP-dependent RNA heli 68.3 38 0.00082 28.6 7.7 68 2-81 257-327 (442)
284 PRK00149 dnaA chromosomal repl 68.1 31 0.00068 29.6 7.8 94 29-122 148-259 (450)
285 KOG1015 Transcription regulato 68.0 58 0.0013 31.3 9.5 43 77-121 822-864 (1567)
286 KOG4284 DEAD box protein [Tran 68.0 6.4 0.00014 35.7 3.5 69 1-81 274-345 (980)
287 cd00133 PTS_IIB PTS_IIB: subun 67.7 26 0.00056 21.5 6.6 53 2-60 2-55 (84)
288 PRK12898 secA preprotein trans 67.7 41 0.00089 30.6 8.6 65 2-78 476-544 (656)
289 PRK07413 hypothetical protein; 67.4 11 0.00023 31.9 4.6 54 74-127 123-178 (382)
290 PRK12323 DNA polymerase III su 67.3 9.8 0.00021 34.6 4.6 39 75-114 123-161 (700)
291 PF13304 AAA_21: AAA domain; P 66.8 9 0.0002 28.7 3.9 37 78-114 259-296 (303)
292 COG3587 Restriction endonuclea 66.8 19 0.00042 33.6 6.3 113 3-122 108-247 (985)
293 PRK06526 transposase; Provisio 66.7 24 0.00052 28.0 6.3 92 49-140 124-234 (254)
294 TIGR00362 DnaA chromosomal rep 66.4 37 0.0008 28.6 7.8 114 6-122 115-247 (405)
295 PRK14088 dnaA chromosomal repl 66.4 85 0.0018 27.0 11.4 119 5-126 109-246 (440)
296 TIGR01448 recD_rel helicase, p 66.4 8.9 0.00019 35.2 4.3 37 75-115 415-451 (720)
297 KOG0330 ATP-dependent RNA heli 66.3 28 0.00061 29.7 6.7 68 2-81 303-373 (476)
298 TIGR00634 recN DNA repair prot 65.6 8.6 0.00019 34.1 3.9 40 76-115 462-501 (563)
299 TIGR00631 uvrb excinuclease AB 65.5 13 0.00029 33.7 5.1 23 2-24 57-79 (655)
300 KOG0018 Structural maintenance 65.5 11 0.00024 35.8 4.6 37 77-115 1074-1110(1141)
301 PF00271 Helicase_C: Helicase 65.4 29 0.00063 21.3 5.9 51 28-85 7-60 (78)
302 COG1131 CcmA ABC-type multidru 64.7 5.7 0.00012 32.2 2.5 65 74-138 152-219 (293)
303 COG4588 AcfC Accessory coloniz 64.5 44 0.00095 26.0 6.9 91 17-111 37-129 (252)
304 PF01182 Glucosamine_iso: Gluc 64.2 15 0.00032 27.9 4.5 77 9-105 3-84 (199)
305 PRK00440 rfc replication facto 64.0 29 0.00064 27.7 6.5 40 75-115 101-140 (319)
306 PF05872 DUF853: Bacterial pro 63.8 22 0.00048 30.9 5.8 34 73-106 251-288 (502)
307 KOG0343 RNA Helicase [RNA proc 63.8 46 0.001 29.9 7.8 70 2-81 316-388 (758)
308 TIGR00824 EIIA-man PTS system, 63.4 46 0.00099 22.9 6.6 75 53-129 3-80 (116)
309 PRK09112 DNA polymerase III su 63.3 11 0.00025 31.4 4.0 39 75-114 140-178 (351)
310 PRK14087 dnaA chromosomal repl 63.2 58 0.0013 28.2 8.4 71 51-121 171-253 (450)
311 TIGR00678 holB DNA polymerase 63.2 12 0.00026 27.8 3.8 40 74-114 94-133 (188)
312 KOG0933 Structural maintenance 62.9 8.1 0.00017 36.5 3.2 79 28-115 1065-1143(1174)
313 PRK04296 thymidine kinase; Pro 62.7 20 0.00043 26.9 5.0 53 56-116 62-114 (190)
314 PF02608 Bmp: Basic membrane p 62.6 53 0.0011 26.6 7.8 115 13-128 19-150 (306)
315 KOG0338 ATP-dependent RNA heli 62.6 30 0.00066 30.6 6.4 71 2-84 429-502 (691)
316 COG0466 Lon ATP-dependent Lon 62.3 20 0.00043 32.9 5.5 66 32-104 380-445 (782)
317 KOG1132 Helicase of the DEAD s 62.3 8.7 0.00019 35.8 3.3 40 50-90 221-261 (945)
318 cd03239 ABC_SMC_head The struc 62.1 12 0.00026 27.9 3.6 41 75-115 115-156 (178)
319 PRK07413 hypothetical protein; 62.1 16 0.00036 30.8 4.7 53 75-127 304-359 (382)
320 PF12846 AAA_10: AAA-like doma 62.0 15 0.00033 28.8 4.5 34 75-108 219-253 (304)
321 cd01120 RecA-like_NTPases RecA 62.0 14 0.0003 25.9 3.9 46 74-119 83-138 (165)
322 PRK07003 DNA polymerase III su 61.4 13 0.00027 34.6 4.2 42 75-118 118-159 (830)
323 PRK14958 DNA polymerase III su 61.2 10 0.00022 33.3 3.6 39 75-114 118-156 (509)
324 TIGR02673 FtsE cell division A 61.2 8.4 0.00018 29.2 2.7 53 74-126 153-205 (214)
325 COG0653 SecA Preprotein transl 60.9 18 0.0004 33.6 5.1 83 3-89 125-213 (822)
326 cd00267 ABC_ATPase ABC (ATP-bi 60.9 7.8 0.00017 27.8 2.4 51 74-124 96-146 (157)
327 TIGR03714 secA2 accessory Sec 60.7 67 0.0014 29.9 8.6 54 1-59 426-480 (762)
328 COG1875 NYN ribonuclease and A 60.7 11 0.00024 31.8 3.4 33 78-114 353-385 (436)
329 KOG0349 Putative DEAD-box RNA 60.4 43 0.00093 29.2 6.9 72 1-81 507-581 (725)
330 KOG0341 DEAD-box protein abstr 59.7 33 0.00072 29.4 6.1 84 2-105 424-510 (610)
331 KOG0996 Structural maintenance 59.5 8.2 0.00018 37.0 2.7 49 78-128 1219-1267(1293)
332 TIGR02169 SMC_prok_A chromosom 59.4 12 0.00027 35.6 4.1 42 75-116 1095-1136(1164)
333 COG0470 HolB ATPase involved i 59.3 23 0.0005 28.3 5.2 61 52-114 74-146 (325)
334 cd00009 AAA The AAA+ (ATPases 58.9 20 0.00044 24.2 4.2 30 74-104 82-111 (151)
335 PRK12402 replication factor C 58.3 18 0.0004 29.2 4.4 40 75-115 124-163 (337)
336 PRK05298 excinuclease ABC subu 58.1 23 0.00051 32.1 5.4 23 2-24 60-82 (652)
337 PF01637 Arch_ATPase: Archaeal 58.0 23 0.0005 26.5 4.7 40 78-117 120-165 (234)
338 cd03263 ABC_subfamily_A The AB 58.0 12 0.00026 28.4 3.1 52 74-126 149-200 (220)
339 cd03274 ABC_SMC4_euk Eukaryoti 57.3 18 0.00039 27.7 4.0 38 77-114 150-187 (212)
340 cd03278 ABC_SMC_barmotin Barmo 57.3 18 0.0004 27.3 4.0 40 75-114 134-173 (197)
341 PRK08451 DNA polymerase III su 57.1 16 0.00035 32.3 4.1 40 74-114 115-154 (535)
342 TIGR01198 pgl 6-phosphoglucono 56.9 39 0.00085 26.3 5.9 56 57-115 38-99 (233)
343 COG0556 UvrB Helicase subunit 56.4 19 0.00042 31.9 4.3 23 2-24 60-82 (663)
344 cd03273 ABC_SMC2_euk Eukaryoti 56.2 15 0.00033 28.7 3.5 42 75-116 187-228 (251)
345 PRK07471 DNA polymerase III su 56.0 19 0.00042 30.1 4.3 43 74-117 139-181 (365)
346 cd01400 6PGL 6PGL: 6-Phosphogl 55.6 38 0.00081 26.1 5.5 56 57-114 33-94 (219)
347 PRK14086 dnaA chromosomal repl 55.3 67 0.0014 29.1 7.6 71 51-121 344-424 (617)
348 PRK04132 replication factor C 55.3 36 0.00079 32.0 6.1 37 76-113 630-666 (846)
349 cd03269 ABC_putative_ATPase Th 55.0 14 0.00031 27.8 3.1 53 74-126 144-196 (210)
350 PF12340 DUF3638: Protein of u 55.0 43 0.00093 26.3 5.7 62 2-65 73-144 (229)
351 PRK11448 hsdR type I restricti 54.9 76 0.0017 30.9 8.4 76 2-84 701-782 (1123)
352 COG0514 RecQ Superfamily II DN 54.8 49 0.0011 29.7 6.6 53 2-59 233-288 (590)
353 PRK14949 DNA polymerase III su 54.8 23 0.0005 33.5 4.8 46 75-122 118-163 (944)
354 cd03225 ABC_cobalt_CbiO_domain 54.7 12 0.00025 28.3 2.5 52 74-125 150-201 (211)
355 PRK09200 preprotein translocas 54.6 56 0.0012 30.5 7.2 53 2-59 431-484 (790)
356 PRK11264 putative amino-acid A 54.5 13 0.00029 28.8 2.9 52 75-126 161-212 (250)
357 cd03229 ABC_Class3 This class 54.4 11 0.00023 27.9 2.2 52 74-125 116-168 (178)
358 COG0593 DnaA ATPase involved i 54.2 1.4E+02 0.0031 25.6 9.2 116 3-122 89-223 (408)
359 PF10100 DUF2338: Uncharacteri 54.0 1.4E+02 0.0031 25.6 10.7 131 3-139 4-145 (429)
360 COG1444 Predicted P-loop ATPas 53.5 33 0.00072 31.7 5.5 34 77-118 324-357 (758)
361 cd03215 ABC_Carb_Monos_II This 53.4 14 0.0003 27.3 2.7 53 74-126 120-172 (182)
362 PRK04841 transcriptional regul 53.2 21 0.00045 33.2 4.3 41 78-118 123-163 (903)
363 cd05566 PTS_IIB_galactitol PTS 53.2 54 0.0012 20.9 5.3 54 2-60 3-57 (89)
364 PRK14952 DNA polymerase III su 53.1 30 0.00064 31.1 5.1 46 75-122 117-162 (584)
365 cd00860 ThrRS_anticodon ThrRS 52.9 56 0.0012 20.6 7.0 54 2-57 4-59 (91)
366 cd03226 ABC_cobalt_CbiO_domain 52.8 12 0.00026 28.2 2.3 52 74-125 142-193 (205)
367 cd06353 PBP1_BmpA_Med_like Per 52.7 87 0.0019 24.6 7.3 111 16-128 20-141 (258)
368 COG0363 NagB 6-phosphogluconol 52.1 56 0.0012 25.7 6.0 63 57-119 42-110 (238)
369 PRK07399 DNA polymerase III su 51.8 59 0.0013 26.6 6.3 39 75-115 123-161 (314)
370 TIGR03522 GldA_ABC_ATP gliding 51.6 19 0.00041 29.1 3.4 53 74-127 149-201 (301)
371 PRK08181 transposase; Validate 51.4 90 0.0019 25.0 7.2 72 49-120 132-212 (269)
372 PHA02533 17 large terminase pr 50.6 46 0.001 29.5 5.9 102 2-117 107-210 (534)
373 cd03216 ABC_Carb_Monos_I This 50.6 16 0.00034 26.6 2.6 53 74-126 98-150 (163)
374 TIGR00348 hsdR type I site-spe 50.5 71 0.0015 29.1 7.2 77 2-85 517-618 (667)
375 PRK13342 recombination factor 50.3 41 0.0009 28.5 5.4 38 76-118 92-129 (413)
376 PRK14873 primosome assembly pr 49.8 1.2E+02 0.0025 27.9 8.4 61 18-91 443-503 (665)
377 PF05876 Terminase_GpA: Phage 49.6 57 0.0012 29.1 6.3 110 2-120 65-182 (557)
378 PRK13536 nodulation factor exp 49.5 15 0.00032 30.5 2.5 54 74-127 188-241 (340)
379 PRK14961 DNA polymerase III su 49.2 22 0.00047 29.7 3.5 39 75-114 118-156 (363)
380 PRK08691 DNA polymerase III su 49.2 30 0.00064 31.8 4.5 39 75-114 118-156 (709)
381 PRK07940 DNA polymerase III su 49.1 35 0.00076 29.0 4.7 72 51-124 84-163 (394)
382 TIGR01407 dinG_rel DnaQ family 49.0 89 0.0019 29.3 7.7 75 2-84 677-753 (850)
383 PRK14956 DNA polymerase III su 48.8 25 0.00055 30.7 3.9 17 75-91 120-136 (484)
384 cd03266 ABC_NatA_sodium_export 48.7 17 0.00037 27.6 2.6 53 74-126 152-204 (218)
385 PRK14969 DNA polymerase III su 48.6 22 0.00048 31.4 3.6 39 75-114 118-156 (527)
386 TIGR00960 3a0501s02 Type II (G 48.6 18 0.00039 27.4 2.8 52 74-125 154-205 (216)
387 PF05707 Zot: Zonular occluden 48.5 22 0.00047 26.7 3.1 52 77-128 80-136 (193)
388 PRK00411 cdc6 cell division co 48.5 23 0.00051 29.5 3.6 26 78-103 140-165 (394)
389 PRK13543 cytochrome c biogenes 48.4 19 0.00041 27.4 2.9 53 74-126 153-205 (214)
390 PRK14957 DNA polymerase III su 48.4 27 0.00058 31.1 4.1 39 75-114 118-156 (546)
391 COG2842 Uncharacterized ATPase 48.3 39 0.00084 27.6 4.6 30 74-104 163-192 (297)
392 cd03230 ABC_DR_subfamily_A Thi 48.2 20 0.00042 26.3 2.8 49 74-122 111-159 (173)
393 cd03213 ABCG_EPDR ABCG transpo 48.1 21 0.00046 26.7 3.0 53 74-126 127-180 (194)
394 PRK14974 cell division protein 48.0 47 0.001 27.6 5.3 54 76-129 222-276 (336)
395 PRK13341 recombination factor 47.9 46 0.001 30.7 5.6 46 76-126 109-154 (725)
396 cd03240 ABC_Rad50 The catalyti 47.8 29 0.00064 26.3 3.8 41 75-115 138-181 (204)
397 cd03260 ABC_PstB_phosphate_tra 47.6 21 0.00046 27.2 3.0 52 74-126 157-208 (227)
398 cd03218 ABC_YhbG The ABC trans 47.5 18 0.00039 27.7 2.6 53 74-126 149-201 (232)
399 CHL00181 cbbX CbbX; Provisiona 47.5 48 0.001 26.7 5.1 48 78-125 124-177 (287)
400 cd03262 ABC_HisP_GlnQ_permease 47.3 18 0.00039 27.3 2.5 53 74-126 151-203 (213)
401 PRK09493 glnQ glutamine ABC tr 47.2 19 0.00042 27.8 2.7 53 74-126 152-204 (240)
402 cd03300 ABC_PotA_N PotA is an 47.1 14 0.00031 28.4 2.0 53 74-126 146-199 (232)
403 cd03276 ABC_SMC6_euk Eukaryoti 46.9 21 0.00046 27.0 2.9 49 74-122 129-180 (198)
404 PRK13537 nodulation ABC transp 46.9 18 0.00039 29.3 2.6 54 74-127 154-207 (306)
405 PRK07994 DNA polymerase III su 46.9 28 0.00061 31.6 4.0 45 75-121 118-162 (647)
406 KOG0334 RNA helicase [RNA proc 46.8 77 0.0017 30.3 6.8 72 2-85 616-690 (997)
407 TIGR02324 CP_lyasePhnL phospho 46.7 24 0.00052 26.9 3.2 53 74-126 165-217 (224)
408 TIGR03771 anch_rpt_ABC anchore 46.5 18 0.00039 27.7 2.5 53 74-126 129-181 (223)
409 PRK14951 DNA polymerase III su 46.4 37 0.00079 30.7 4.6 44 75-120 123-166 (618)
410 TIGR01277 thiQ thiamine ABC tr 46.3 18 0.00038 27.4 2.4 52 74-125 144-196 (213)
411 PRK14253 phosphate ABC transpo 46.3 20 0.00043 27.8 2.7 52 74-126 161-212 (249)
412 cd03235 ABC_Metallic_Cations A 46.0 20 0.00043 27.1 2.6 53 74-126 148-200 (213)
413 TIGR02168 SMC_prok_B chromosom 45.9 27 0.00059 33.3 4.0 42 75-116 1110-1151(1179)
414 cd03275 ABC_SMC1_euk Eukaryoti 45.8 33 0.00072 26.7 3.9 40 76-115 177-217 (247)
415 cd03219 ABC_Mj1267_LivG_branch 45.8 20 0.00043 27.5 2.6 53 74-126 159-211 (236)
416 TIGR03740 galliderm_ABC gallid 45.5 23 0.00051 26.9 3.0 53 74-126 140-192 (223)
417 PF13558 SbcCD_C: Putative exo 45.5 56 0.0012 21.3 4.4 39 62-101 50-88 (90)
418 smart00490 HELICc helicase sup 45.5 66 0.0014 19.3 6.8 51 28-85 11-64 (82)
419 PRK11231 fecE iron-dicitrate t 45.4 24 0.00051 27.6 3.0 54 74-127 154-207 (255)
420 PRK14960 DNA polymerase III su 45.2 32 0.00069 31.5 4.0 38 75-113 117-154 (702)
421 PRK11124 artP arginine transpo 45.2 21 0.00045 27.6 2.7 53 74-126 157-209 (242)
422 PF14792 DNA_pol_B_palm: DNA p 45.1 19 0.00042 24.7 2.2 48 9-60 4-51 (112)
423 TIGR03871 ABC_peri_MoxJ_2 quin 44.9 53 0.0012 24.7 4.9 43 21-64 28-70 (232)
424 cd03241 ABC_RecN RecN ATPase i 44.7 36 0.00079 27.1 4.0 41 76-116 192-232 (276)
425 PRK11034 clpA ATP-dependent Cl 44.4 31 0.00068 31.9 4.0 44 78-121 280-327 (758)
426 PF05970 PIF1: PIF1-like helic 44.3 19 0.00042 30.0 2.5 30 74-104 100-129 (364)
427 PF03129 HGTP_anticodon: Antic 43.9 85 0.0018 20.1 6.9 55 1-57 1-60 (94)
428 cd03259 ABC_Carb_Solutes_like 43.8 19 0.00042 27.1 2.3 53 74-126 146-199 (213)
429 PRK13538 cytochrome c biogenes 43.6 26 0.00056 26.3 2.9 47 74-120 145-191 (204)
430 cd03224 ABC_TM1139_LivF_branch 43.5 26 0.00055 26.6 2.9 53 74-126 148-200 (222)
431 TIGR01184 ntrCD nitrate transp 43.5 20 0.00042 27.7 2.3 53 74-126 130-183 (230)
432 PRK08699 DNA polymerase III su 43.4 1.1E+02 0.0023 25.2 6.7 40 74-114 111-150 (325)
433 PHA03368 DNA packaging termina 43.3 26 0.00056 32.1 3.2 102 2-119 287-392 (738)
434 COG4626 Phage terminase-like p 43.2 67 0.0015 28.6 5.6 96 3-115 122-223 (546)
435 TIGR00972 3a0107s01c2 phosphat 43.2 25 0.00055 27.3 2.9 53 74-127 160-212 (247)
436 PF08967 DUF1884: Domain of un 42.9 75 0.0016 20.7 4.4 35 50-86 26-60 (85)
437 PRK14260 phosphate ABC transpo 42.8 33 0.00072 26.8 3.5 52 74-126 166-217 (259)
438 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 42.7 25 0.00054 27.0 2.7 52 74-125 158-209 (224)
439 cd03298 ABC_ThiQ_thiamine_tran 42.6 23 0.00051 26.7 2.5 53 74-126 144-197 (211)
440 PRK08769 DNA polymerase III su 42.5 43 0.00094 27.6 4.2 40 75-115 112-151 (319)
441 PRK14964 DNA polymerase III su 42.5 53 0.0011 28.8 4.9 68 51-120 84-158 (491)
442 TIGR02881 spore_V_K stage V sp 42.5 56 0.0012 25.7 4.7 28 78-105 107-138 (261)
443 PRK06645 DNA polymerase III su 42.3 54 0.0012 28.9 5.0 43 75-119 127-169 (507)
444 TIGR03873 F420-0_ABC_ATP propo 42.3 24 0.00052 27.6 2.6 54 74-127 153-206 (256)
445 PRK14243 phosphate transporter 41.9 32 0.00069 27.1 3.3 52 74-126 167-218 (264)
446 PRK09111 DNA polymerase III su 41.8 60 0.0013 29.3 5.3 40 74-114 130-169 (598)
447 PRK11614 livF leucine/isoleuci 41.8 22 0.00048 27.4 2.3 53 74-126 153-205 (237)
448 TIGR01128 holA DNA polymerase 41.7 1.7E+02 0.0038 23.0 8.0 44 76-119 46-89 (302)
449 cd03292 ABC_FtsE_transporter F 41.6 26 0.00056 26.4 2.7 51 74-124 152-202 (214)
450 cd05563 PTS_IIB_ascorbate PTS_ 41.6 90 0.002 19.7 5.4 52 2-60 2-54 (86)
451 KOG0921 Dosage compensation co 41.5 31 0.00068 32.7 3.4 31 54-88 475-505 (1282)
452 PRK14259 phosphate ABC transpo 41.4 33 0.00072 27.1 3.3 52 74-126 170-221 (269)
453 cd03268 ABC_BcrA_bacitracin_re 41.3 28 0.0006 26.2 2.8 52 74-125 142-193 (208)
454 PRK03695 vitamin B12-transport 41.2 25 0.00054 27.4 2.6 51 76-126 151-201 (248)
455 TIGR00069 hisD histidinol dehy 40.7 80 0.0017 26.9 5.5 67 1-81 233-299 (393)
456 cd03214 ABC_Iron-Siderophores_ 40.2 24 0.00051 26.0 2.2 52 74-125 113-165 (180)
457 PRK14239 phosphate transporter 40.2 32 0.0007 26.7 3.1 52 74-126 164-215 (252)
458 COG2812 DnaX DNA polymerase II 40.1 20 0.00044 31.5 2.0 29 74-102 117-145 (515)
459 PRK05563 DNA polymerase III su 40.1 39 0.00084 30.1 3.8 45 74-120 117-161 (559)
460 cd03234 ABCG_White The White s 40.0 29 0.00062 26.5 2.7 53 74-126 159-212 (226)
461 KOG0740 AAA+-type ATPase [Post 39.9 62 0.0013 27.9 4.8 64 76-139 245-321 (428)
462 cd03409 Chelatase_Class_II Cla 39.8 1E+02 0.0022 19.9 6.7 32 28-59 34-66 (101)
463 cd03232 ABC_PDR_domain2 The pl 39.8 45 0.00097 24.8 3.7 46 74-119 124-169 (192)
464 PRK13770 histidinol dehydrogen 39.6 74 0.0016 27.3 5.2 27 1-27 254-280 (416)
465 PRK13643 cbiO cobalt transport 39.5 32 0.00069 27.6 3.0 53 74-126 160-212 (288)
466 TIGR02315 ABC_phnC phosphonate 39.4 24 0.00053 27.2 2.3 53 74-126 161-214 (243)
467 CHL00073 chlN photochlorophyll 39.4 1.2E+02 0.0025 26.5 6.5 55 4-59 343-399 (457)
468 TIGR01188 drrA daunorubicin re 39.2 27 0.00059 28.2 2.5 53 74-126 140-192 (302)
469 TIGR03410 urea_trans_UrtE urea 39.2 27 0.00058 26.7 2.4 53 74-126 147-200 (230)
470 PRK08058 DNA polymerase III su 39.1 40 0.00086 27.7 3.5 61 52-114 78-147 (329)
471 cd03217 ABC_FeS_Assembly ABC-t 38.8 27 0.00057 26.3 2.3 47 74-120 120-166 (200)
472 TIGR00968 3a0106s01 sulfate AB 38.7 28 0.00061 26.9 2.5 53 74-126 146-199 (237)
473 PF05729 NACHT: NACHT domain 38.7 1.3E+02 0.0029 20.9 6.5 58 79-139 84-149 (166)
474 PRK13649 cbiO cobalt transport 38.7 27 0.00057 27.8 2.4 53 74-126 161-213 (280)
475 cd03261 ABC_Org_Solvent_Resist 38.5 28 0.0006 26.8 2.4 53 74-126 152-205 (235)
476 PF02670 DXP_reductoisom: 1-de 38.5 1.4E+02 0.0031 21.1 8.3 62 3-67 2-63 (129)
477 PRK14953 DNA polymerase III su 38.5 64 0.0014 28.2 4.8 40 75-116 118-157 (486)
478 TIGR03411 urea_trans_UrtD urea 38.4 42 0.00091 25.8 3.4 52 74-126 159-210 (242)
479 PRK10619 histidine/lysine/argi 38.3 31 0.00067 27.0 2.7 53 74-126 168-220 (257)
480 PRK06921 hypothetical protein; 38.2 2E+02 0.0044 22.8 8.7 91 29-120 117-227 (266)
481 cd03255 ABC_MJ0796_Lo1CDE_FtsE 38.1 36 0.00077 25.7 3.0 47 74-120 156-203 (218)
482 COG4152 ABC-type uncharacteriz 38.1 70 0.0015 25.8 4.5 54 75-128 147-200 (300)
483 cd03258 ABC_MetN_methionine_tr 38.1 25 0.00054 27.0 2.1 53 74-126 156-209 (233)
484 KOG0326 ATP-dependent RNA heli 38.1 46 0.001 27.8 3.6 69 1-81 324-395 (459)
485 PRK10895 lipopolysaccharide AB 38.1 32 0.00069 26.6 2.7 53 74-126 153-205 (241)
486 TIGR02397 dnaX_nterm DNA polym 38.0 39 0.00085 27.6 3.4 39 74-113 115-153 (355)
487 PRK14959 DNA polymerase III su 37.9 66 0.0014 29.2 4.9 46 75-122 118-163 (624)
488 cd03267 ABC_NatA_like Similar 37.9 32 0.00068 26.6 2.6 53 74-126 169-222 (236)
489 PF13307 Helicase_C_2: Helicas 37.8 40 0.00086 24.6 3.1 77 2-86 12-91 (167)
490 PRK14254 phosphate ABC transpo 37.7 46 0.001 26.6 3.7 53 74-127 196-248 (285)
491 PRK14273 phosphate ABC transpo 37.6 38 0.00083 26.4 3.1 52 74-126 166-217 (254)
492 PRK00877 hisD bifunctional his 37.6 90 0.002 26.9 5.4 67 1-81 264-330 (425)
493 COG1124 DppF ABC-type dipeptid 37.4 32 0.00069 27.3 2.5 62 76-138 159-224 (252)
494 PRK14261 phosphate ABC transpo 37.3 38 0.00082 26.4 3.1 53 74-127 165-217 (253)
495 cd03228 ABCC_MRP_Like The MRP 37.3 66 0.0014 23.4 4.2 46 74-120 112-157 (171)
496 PRK05707 DNA polymerase III su 37.3 55 0.0012 27.0 4.1 61 51-113 71-142 (328)
497 PRK06305 DNA polymerase III su 37.2 48 0.0011 28.6 3.9 38 75-113 120-157 (451)
498 PRK13638 cbiO cobalt transport 37.2 29 0.00062 27.5 2.4 53 74-126 152-204 (271)
499 cd03244 ABCC_MRP_domain2 Domai 36.9 63 0.0014 24.4 4.2 45 74-119 155-199 (221)
500 COG1474 CDC6 Cdc6-related prot 36.5 1.2E+02 0.0026 25.5 6.0 44 76-120 123-167 (366)
No 1
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.9e-38 Score=251.88 Aligned_cols=165 Identities=34% Similarity=0.588 Sum_probs=159.1
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
+|+||+||||||.||.++++.++..+ +++++.++||.+...+...+. ..|||+|||||+|++++++++.++++.++++
T Consensus 131 ~~lVLtPtRELA~QI~e~fe~Lg~~i-glr~~~lvGG~~m~~q~~~L~-kkPhilVaTPGrL~dhl~~Tkgf~le~lk~L 208 (476)
T KOG0330|consen 131 FALVLTPTRELAQQIAEQFEALGSGI-GLRVAVLVGGMDMMLQANQLS-KKPHILVATPGRLWDHLENTKGFSLEQLKFL 208 (476)
T ss_pred eEEEecCcHHHHHHHHHHHHHhcccc-CeEEEEEecCchHHHHHHHhh-cCCCEEEeCcHHHHHHHHhccCccHHHhHHH
Confidence 58999999999999999999999888 999999999999999999985 5899999999999999998899999999999
Q ss_pred EEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCCcc
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (183)
|+||||++++++|.+.+..|++.+|.++|+++||||++..+..+.+.-+.+|+.|.+... +.+.+
T Consensus 209 VlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~k---------------y~tv~ 273 (476)
T KOG0330|consen 209 VLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSK---------------YQTVD 273 (476)
T ss_pred hhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccch---------------hcchH
Confidence 999999999999999999999999999999999999999999999999999999999888 99999
Q ss_pred CceEEEEEecCcchhhhhhccc
Q 030094 161 GLHLEVIWNVNQMRNHHNLLIC 182 (183)
Q Consensus 161 ~l~q~~i~~~~~~k~~~ll~ll 182 (183)
+++|+|++++..+|..+|+.+|
T Consensus 274 ~lkQ~ylfv~~k~K~~yLV~ll 295 (476)
T KOG0330|consen 274 HLKQTYLFVPGKDKDTYLVYLL 295 (476)
T ss_pred HhhhheEeccccccchhHHHHH
Confidence 9999999999999999999875
No 2
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.5e-36 Score=244.81 Aligned_cols=168 Identities=57% Similarity=0.879 Sum_probs=158.9
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHh-cCCcCCCCceEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-MDVLDFRNLEIL 80 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~-~~~~~l~~l~~l 80 (183)
|||+.||||||.||++++..+..+++++.+.+++||.+.+++...+...+|+|+|||||||.+++.+ ...+++++++++
T Consensus 82 alIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~L 161 (567)
T KOG0345|consen 82 ALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEIL 161 (567)
T ss_pred EEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceE
Confidence 8999999999999999999999998999999999999999999999999999999999999999987 445778899999
Q ss_pred EEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCCcc
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (183)
|+||||+++++||...++.|++.+|++|++=+||||.+.++..+++..++||+.|.+..+++ ..+|+
T Consensus 162 VLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~-------------~~tPS 228 (567)
T KOG0345|consen 162 VLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSK-------------SATPS 228 (567)
T ss_pred EecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeeccccc-------------ccCch
Confidence 99999999999999999999999999999999999999999999999999999999988843 34999
Q ss_pred CceEEEEEecCcchhhhhhccc
Q 030094 161 GLHLEVIWNVNQMRNHHNLLIC 182 (183)
Q Consensus 161 ~l~q~~i~~~~~~k~~~ll~ll 182 (183)
.++.+|+.|++.+|.+.|+.+|
T Consensus 229 ~L~~~Y~v~~a~eK~~~lv~~L 250 (567)
T KOG0345|consen 229 SLALEYLVCEADEKLSQLVHLL 250 (567)
T ss_pred hhcceeeEecHHHHHHHHHHHH
Confidence 9999999999999999998775
No 3
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-35 Score=247.57 Aligned_cols=164 Identities=40% Similarity=0.586 Sum_probs=154.5
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
|||+.||||||.|+++++.+.+++. ++++.++.||...+.+...+ ++++|+|||||||+.+|..+..++.++++++|
T Consensus 144 alIISPTRELA~QtFevL~kvgk~h-~fSaGLiiGG~~~k~E~eRi--~~mNILVCTPGRLLQHmde~~~f~t~~lQmLv 220 (758)
T KOG0343|consen 144 ALIISPTRELALQTFEVLNKVGKHH-DFSAGLIIGGKDVKFELERI--SQMNILVCTPGRLLQHMDENPNFSTSNLQMLV 220 (758)
T ss_pred eEEecchHHHHHHHHHHHHHHhhcc-ccccceeecCchhHHHHHhh--hcCCeEEechHHHHHHhhhcCCCCCCcceEEE
Confidence 8999999999999999999998876 99999999999998888887 57999999999999999997889999999999
Q ss_pred EcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCCccC
Q 030094 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLG 161 (183)
Q Consensus 82 vDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (183)
+||||+++++||...+..|++.+|+.+|+++||||-+..+..+++..++||.+|.+..... ..+|++
T Consensus 221 LDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~-------------~atP~~ 287 (758)
T KOG0343|consen 221 LDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAV-------------AATPSN 287 (758)
T ss_pred eccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEecccc-------------ccChhh
Confidence 9999999999999999999999999999999999999999999999999999999875432 789999
Q ss_pred ceEEEEEecCcchhhhhhcc
Q 030094 162 LHLEVIWNVNQMRNHHNLLI 181 (183)
Q Consensus 162 l~q~~i~~~~~~k~~~ll~l 181 (183)
++|+|+.|+-++|++.|..+
T Consensus 288 L~Q~y~~v~l~~Ki~~L~sF 307 (758)
T KOG0343|consen 288 LQQSYVIVPLEDKIDMLWSF 307 (758)
T ss_pred hhheEEEEehhhHHHHHHHH
Confidence 99999999999999988765
No 4
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-35 Score=252.29 Aligned_cols=166 Identities=34% Similarity=0.556 Sum_probs=153.2
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
|||++||||||.|+++.+.+++.+.+++++..++||.+...+...+.. ++||+|||||||++++.+ +.+++++++++|
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~-~~~ivVaTPGRllD~i~~-~~l~l~~v~~lV 179 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR-GVDIVVATPGRLLDLIKR-GKLDLSGVETLV 179 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc-CCCEEEECccHHHHHHHc-CCcchhhcCEEE
Confidence 899999999999999999999987657999999999999999988854 799999999999999999 789999999999
Q ss_pred EcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCCccC
Q 030094 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLG 161 (183)
Q Consensus 82 vDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (183)
+||||+|+++||.+++..|++.+|.++|+++||||+++.+..+++.++++|..|.+..+.. ..+..+
T Consensus 180 lDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~-------------~~~~~~ 246 (513)
T COG0513 180 LDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKL-------------ERTLKK 246 (513)
T ss_pred eccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccc-------------cccccC
Confidence 9999999999999999999999999999999999999999999999999999999885521 448999
Q ss_pred ceEEEEEecCcc-hhhhhhccc
Q 030094 162 LHLEVIWNVNQM-RNHHNLLIC 182 (183)
Q Consensus 162 l~q~~i~~~~~~-k~~~ll~ll 182 (183)
|.|+|+.|++.+ |...|..+|
T Consensus 247 i~q~~~~v~~~~~k~~~L~~ll 268 (513)
T COG0513 247 IKQFYLEVESEEEKLELLLKLL 268 (513)
T ss_pred ceEEEEEeCCHHHHHHHHHHHH
Confidence 999999999887 888776654
No 5
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.9e-36 Score=246.82 Aligned_cols=152 Identities=38% Similarity=0.565 Sum_probs=145.3
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
+||||||||||.|++++.++++.+. ++.+++++||-+.+.|...|. .+|||+|+||||+.+|+++..+|+++++..+|
T Consensus 255 VLVL~PTRELaiQv~sV~~qlaqFt-~I~~~L~vGGL~lk~QE~~LR-s~PDIVIATPGRlIDHlrNs~sf~ldsiEVLv 332 (691)
T KOG0338|consen 255 VLVLVPTRELAIQVHSVTKQLAQFT-DITVGLAVGGLDLKAQEAVLR-SRPDIVIATPGRLIDHLRNSPSFNLDSIEVLV 332 (691)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhc-cceeeeeecCccHHHHHHHHh-hCCCEEEecchhHHHHhccCCCccccceeEEE
Confidence 6999999999999999999999988 899999999999999988884 68999999999999999998899999999999
Q ss_pred EcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCCccC
Q 030094 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLG 161 (183)
Q Consensus 82 vDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (183)
+||||+||+.+|.++|+.|++.+|++||+++||||+++++..+++..+++|+.|.++.. ..++..
T Consensus 333 lDEADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~---------------~~~a~~ 397 (691)
T KOG0338|consen 333 LDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPN---------------KDTAPK 397 (691)
T ss_pred echHHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCc---------------cccchh
Confidence 99999999999999999999999999999999999999999999999999999999998 778899
Q ss_pred ceEEEEEec
Q 030094 162 LHLEVIWNV 170 (183)
Q Consensus 162 l~q~~i~~~ 170 (183)
+.|.|+.+-
T Consensus 398 LtQEFiRIR 406 (691)
T KOG0338|consen 398 LTQEFIRIR 406 (691)
T ss_pred hhHHHheec
Confidence 999998764
No 6
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4e-35 Score=228.43 Aligned_cols=162 Identities=32% Similarity=0.472 Sum_probs=153.4
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
||+||.||||||.|+.+++..++.++ ++.+..+.||.+..++.+.+ +.|+|++.|||||+.+++++ +.+..+.++++
T Consensus 97 Q~lilsPTRELa~Qi~~vi~alg~~m-nvq~hacigg~n~gedikkl-d~G~hvVsGtPGrv~dmikr-~~L~tr~vkml 173 (400)
T KOG0328|consen 97 QALILSPTRELAVQIQKVILALGDYM-NVQCHACIGGKNLGEDIKKL-DYGQHVVSGTPGRVLDMIKR-RSLRTRAVKML 173 (400)
T ss_pred eEEEecChHHHHHHHHHHHHHhcccc-cceEEEEecCCccchhhhhh-cccceEeeCCCchHHHHHHh-ccccccceeEE
Confidence 69999999999999999999999888 99999999999999999988 58999999999999999999 99999999999
Q ss_pred EEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCCcc
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (183)
|+||||.|++.+|.+++-.+.+.+|+.+|++++|||+|.++.+..++|+.+|+.|.+... ..+.+
T Consensus 174 VLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrd---------------eltlE 238 (400)
T KOG0328|consen 174 VLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRD---------------ELTLE 238 (400)
T ss_pred EeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecC---------------CCchh
Confidence 999999999999999999999999999999999999999999999999999999999888 67888
Q ss_pred CceEEEEEecCcc-hhhhhhc
Q 030094 161 GLHLEVIWNVNQM-RNHHNLL 180 (183)
Q Consensus 161 ~l~q~~i~~~~~~-k~~~ll~ 180 (183)
+|+|||+.++.++ |+..|-.
T Consensus 239 gIKqf~v~ve~EewKfdtLcd 259 (400)
T KOG0328|consen 239 GIKQFFVAVEKEEWKFDTLCD 259 (400)
T ss_pred hhhhheeeechhhhhHhHHHH
Confidence 9999999998776 8877643
No 7
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.4e-35 Score=246.24 Aligned_cols=166 Identities=33% Similarity=0.505 Sum_probs=152.8
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.+|||+||||||.||.+.+.+++... .+++.+++||.+...|.+.+ +.++||+||||+||.++++. +.+++++|.++
T Consensus 167 ~vLVL~PTRELA~QV~~~~~~~~~~~-~~~~~cvyGG~~~~~Q~~~l-~~gvdiviaTPGRl~d~le~-g~~~l~~v~yl 243 (519)
T KOG0331|consen 167 IVLVLAPTRELAVQVQAEAREFGKSL-RLRSTCVYGGAPKGPQLRDL-ERGVDVVIATPGRLIDLLEE-GSLNLSRVTYL 243 (519)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHcCCC-CccEEEEeCCCCccHHHHHH-hcCCcEEEeCChHHHHHHHc-CCccccceeEE
Confidence 48999999999999999999999887 79999999999999999999 56899999999999999999 99999999999
Q ss_pred EEcccchhhccchHHHHHHHHHhC-CCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCCc
Q 030094 81 VLDEADRLLDMGFQKQISYIISRL-PKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTP 159 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l-~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (183)
|+||||+|+++||+++++.|++.+ ++.+|+++||||||..++.++..|+.+|..+.+....+ ....
T Consensus 244 VLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~-------------~~a~ 310 (519)
T KOG0331|consen 244 VLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKE-------------LKAN 310 (519)
T ss_pred EeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhh-------------hhhh
Confidence 999999999999999999999999 56679999999999999999999999999999875521 5667
Q ss_pred cCceEEEEEecCcchhhhhhccc
Q 030094 160 LGLHLEVIWNVNQMRNHHNLLIC 182 (183)
Q Consensus 160 ~~l~q~~i~~~~~~k~~~ll~ll 182 (183)
.++.|....|+...|...|..+|
T Consensus 311 ~~i~qive~~~~~~K~~~l~~lL 333 (519)
T KOG0331|consen 311 HNIRQIVEVCDETAKLRKLGKLL 333 (519)
T ss_pred cchhhhhhhcCHHHHHHHHHHHH
Confidence 88999999999988988887654
No 8
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=7.7e-34 Score=234.25 Aligned_cols=168 Identities=38% Similarity=0.555 Sum_probs=155.4
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.|+|+|||||||.|++.+++.+.++.++..+..+.||.+...+.+.+.+ +|+|+|+|||||.+++++.+.+-.++++++
T Consensus 156 ~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k-~~niliATPGRLlDHlqNt~~f~~r~~k~l 234 (543)
T KOG0342|consen 156 GVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVK-GCNILIATPGRLLDHLQNTSGFLFRNLKCL 234 (543)
T ss_pred eEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhc-cccEEEeCCchHHhHhhcCCcchhhcccee
Confidence 3799999999999999999999998889999999999999999888865 999999999999999999788889999999
Q ss_pred EEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCC-CCeEEEEccCCcccccccchhhcccCCCc
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLR-NPVRVEVRAESKSHHVSASSQQLASSKTP 159 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (183)
|+||||++++.||.++++.|++.+|+.+|+.+||||.+++|+++++.-++ +|.+|...++++ ..+.
T Consensus 235 vlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~-------------~~Th 301 (543)
T KOG0342|consen 235 VLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGE-------------RETH 301 (543)
T ss_pred EeecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCC-------------cchh
Confidence 99999999999999999999999999999999999999999999998877 599999988754 7788
Q ss_pred cCceEEEEEecCcchhhhhhccc
Q 030094 160 LGLHLEVIWNVNQMRNHHNLLIC 182 (183)
Q Consensus 160 ~~l~q~~i~~~~~~k~~~ll~ll 182 (183)
+.+.|.|++++...++..+..+|
T Consensus 302 e~l~Qgyvv~~~~~~f~ll~~~L 324 (543)
T KOG0342|consen 302 ERLEQGYVVAPSDSRFSLLYTFL 324 (543)
T ss_pred hcccceEEeccccchHHHHHHHH
Confidence 99999999999999877666554
No 9
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-33 Score=233.98 Aligned_cols=162 Identities=34% Similarity=0.507 Sum_probs=149.7
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
++||+|||||||.||+.+|++|++.+ ++++.+++||.+..+|.+.|. .+|.||||||+||.++++- +..++.++.+|
T Consensus 298 i~vilvPTrela~Qi~~eaKkf~K~y-gl~~v~~ygGgsk~eQ~k~Lk-~g~EivVaTPgRlid~Vkm-Katn~~rvS~L 374 (731)
T KOG0339|consen 298 IGVILVPTRELASQIFSEAKKFGKAY-GLRVVAVYGGGSKWEQSKELK-EGAEIVVATPGRLIDMVKM-KATNLSRVSYL 374 (731)
T ss_pred eEEEEeccHHHHHHHHHHHHHhhhhc-cceEEEeecCCcHHHHHHhhh-cCCeEEEechHHHHHHHHh-hcccceeeeEE
Confidence 58999999999999999999999988 999999999999999999996 7999999999999999988 89999999999
Q ss_pred EEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCCcc
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (183)
|+||||+|+++||..+++.|..++.+++|+++||||++..++.+++.++.+|+.+...+- .....
T Consensus 375 V~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~v---------------gean~ 439 (731)
T KOG0339|consen 375 VLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEV---------------GEANE 439 (731)
T ss_pred EEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeeh---------------hcccc
Confidence 999999999999999999999999999999999999999999999999999999887755 44577
Q ss_pred CceEEEEEecCcc-hhhhhhc
Q 030094 161 GLHLEVIWNVNQM-RNHHNLL 180 (183)
Q Consensus 161 ~l~q~~i~~~~~~-k~~~ll~ 180 (183)
.|.|.+.+|++++ |.++|+.
T Consensus 440 dITQ~V~V~~s~~~Kl~wl~~ 460 (731)
T KOG0339|consen 440 DITQTVSVCPSEEKKLNWLLR 460 (731)
T ss_pred chhheeeeccCcHHHHHHHHH
Confidence 8899998887666 6666654
No 10
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-33 Score=222.10 Aligned_cols=160 Identities=31% Similarity=0.504 Sum_probs=149.9
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
||+|+|||||||.|+.++|.++++++ +++++..+||.+..++.-.+ ...+|++||||||+++++++ +.-+++++.++
T Consensus 155 Q~~ilVPtrelALQtSqvc~~lskh~-~i~vmvttGGT~lrDDI~Rl-~~~VH~~vgTPGRIlDL~~K-gVa~ls~c~~l 231 (459)
T KOG0326|consen 155 QAIILVPTRELALQTSQVCKELSKHL-GIKVMVTTGGTSLRDDIMRL-NQTVHLVVGTPGRILDLAKK-GVADLSDCVIL 231 (459)
T ss_pred eEEEEeecchhhHHHHHHHHHHhccc-CeEEEEecCCcccccceeee-cCceEEEEcCChhHHHHHhc-ccccchhceEE
Confidence 68999999999999999999999998 89999999999999888887 56899999999999999988 88899999999
Q ss_pred EEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCCcc
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (183)
|+||||.|++..|.+.++.++..+|+++|+++||||+|-.+..|+++||++|..|++-++ .++.
T Consensus 232 V~DEADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e----------------Ltl~ 295 (459)
T KOG0326|consen 232 VMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE----------------LTLK 295 (459)
T ss_pred EechhhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhh----------------hhhc
Confidence 999999999999999999999999999999999999999999999999999999987665 6788
Q ss_pred CceEEEEEecCcchhhhhh
Q 030094 161 GLHLEVIWNVNQMRNHHNL 179 (183)
Q Consensus 161 ~l~q~~i~~~~~~k~~~ll 179 (183)
++.|||-+|++.+|..-|-
T Consensus 296 GvtQyYafV~e~qKvhCLn 314 (459)
T KOG0326|consen 296 GVTQYYAFVEERQKVHCLN 314 (459)
T ss_pred chhhheeeechhhhhhhHH
Confidence 9999999999998876543
No 11
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-33 Score=217.60 Aligned_cols=165 Identities=24% Similarity=0.424 Sum_probs=154.3
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
+|++|.|||||.||.....++++++|+++++.++||.+++.+...++ +.|||+||||||++.+.++ +.+++++++.+|
T Consensus 113 vlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk-~~PhivVgTPGrilALvr~-k~l~lk~vkhFv 190 (387)
T KOG0329|consen 113 VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLK-NCPHIVVGTPGRILALVRN-RSLNLKNVKHFV 190 (387)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHh-CCCeEEEcCcHHHHHHHHh-ccCchhhcceee
Confidence 68999999999999999999999999999999999999998888885 4899999999999999998 999999999999
Q ss_pred Ecccchhhcc-chHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCCcc
Q 030094 82 LDEADRLLDM-GFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (183)
Q Consensus 82 vDEad~ll~~-~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (183)
+||+|.|+++ ..+.+++.|++..|+..|..+||||++.+++..+++||.||..|.++++. ..+..
T Consensus 191 lDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~--------------KLtLH 256 (387)
T KOG0329|consen 191 LDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEA--------------KLTLH 256 (387)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchh--------------hhhhh
Confidence 9999999864 57899999999999999999999999999999999999999999999995 56889
Q ss_pred CceEEEEEecCcchhhhhhccc
Q 030094 161 GLHLEVIWNVNQMRNHHNLLIC 182 (183)
Q Consensus 161 ~l~q~~i~~~~~~k~~~ll~ll 182 (183)
+++|||+..++.+|..++.-||
T Consensus 257 GLqQ~YvkLke~eKNrkl~dLL 278 (387)
T KOG0329|consen 257 GLQQYYVKLKENEKNRKLNDLL 278 (387)
T ss_pred hHHHHHHhhhhhhhhhhhhhhh
Confidence 9999999999999888876654
No 12
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.1e-33 Score=232.07 Aligned_cols=181 Identities=32% Similarity=0.503 Sum_probs=155.5
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
+|||+|||||||.|+|+.+.+|.+.+.=+..+.+.||...+.+...+. .|++|+|||||||.++++++..+.++.++++
T Consensus 213 ~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLR-KGiNILIgTPGRLvDHLknT~~i~~s~LRwl 291 (708)
T KOG0348|consen 213 YALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLR-KGINILIGTPGRLVDHLKNTKSIKFSRLRWL 291 (708)
T ss_pred eEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHh-cCceEEEcCchHHHHHHhccchheeeeeeEE
Confidence 699999999999999999999998776678889999999999999984 6999999999999999999889999999999
Q ss_pred EEcccchhhccchHHHHHHHHHhC-------------CCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCc-----
Q 030094 81 VLDEADRLLDMGFQKQISYIISRL-------------PKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESK----- 142 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l-------------~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~----- 142 (183)
|+||||++++.||+.++..|++.+ |+..|.+++|||+++.|.++++.-++||+.|..+....
T Consensus 292 VlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~ 371 (708)
T KOG0348|consen 292 VLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPK 371 (708)
T ss_pred EecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcc
Confidence 999999999999999999998877 23479999999999999999999999999999443211
Q ss_pred -----ccccccchhhcccCCCccCceEEEEEecCcchhhhhhccc
Q 030094 143 -----SHHVSASSQQLASSKTPLGLHLEVIWNVNQMRNHHNLLIC 182 (183)
Q Consensus 143 -----~~~~~~~~~~~~~~~~~~~l~q~~i~~~~~~k~~~ll~ll 182 (183)
+..+.+.........+|+++.|.|.+|++.-+...|.++|
T Consensus 372 ~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L 416 (708)
T KOG0348|consen 372 DKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALL 416 (708)
T ss_pred hhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHH
Confidence 1111111112344789999999999999999999888776
No 13
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=3.6e-31 Score=216.32 Aligned_cols=166 Identities=24% Similarity=0.377 Sum_probs=145.7
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCC-CceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCC-cCCCCce
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLP-DVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLE 78 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~-~~l~~l~ 78 (183)
.|+|||||||||+|+|.++.++..+++ .+++.-+....+-......+ ...|||+||||+++..++.. +. ..+++++
T Consensus 95 sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L-~d~pdIvV~TP~~ll~~~~~-~~~~~~~~l~ 172 (569)
T KOG0346|consen 95 SAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVAL-MDLPDIVVATPAKLLRHLAA-GVLEYLDSLS 172 (569)
T ss_pred eeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHH-ccCCCeEEeChHHHHHHHhh-ccchhhhhee
Confidence 389999999999999999999988875 57777666555544444444 56899999999999999988 65 6789999
Q ss_pred EEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCC
Q 030094 79 ILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKT 158 (183)
Q Consensus 79 ~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (183)
++|+||||.+++.||++++..+.+.+|+..|.+++|||+++++..+.+.+++||+.+.+.+.+ -..
T Consensus 173 ~LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~e--------------l~~ 238 (569)
T KOG0346|consen 173 FLVVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGE--------------LPN 238 (569)
T ss_pred eEEechhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEecccc--------------CCC
Confidence 999999999999999999999999999999999999999999999999999999999987773 447
Q ss_pred ccCceEEEEEecCcchhhhhhccc
Q 030094 159 PLGLHLEVIWNVNQMRNHHNLLIC 182 (183)
Q Consensus 159 ~~~l~q~~i~~~~~~k~~~ll~ll 182 (183)
+++++||++.|++++|+..+..++
T Consensus 239 ~dqL~Qy~v~cse~DKflllyall 262 (569)
T KOG0346|consen 239 PDQLTQYQVKCSEEDKFLLLYALL 262 (569)
T ss_pred cccceEEEEEeccchhHHHHHHHH
Confidence 889999999999999998776654
No 14
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=8e-31 Score=218.24 Aligned_cols=164 Identities=35% Similarity=0.552 Sum_probs=151.9
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.+||++||||||.|+|+.++++.... .+++...+||.+...+.+.+ ..+|||+|||||||.++++. +.+.+.+++++
T Consensus 154 ~~lIlapTReL~~Qi~nea~k~~~~s-~~~~~~~ygg~~~~~q~~~~-~~gcdIlvaTpGrL~d~~e~-g~i~l~~~k~~ 230 (482)
T KOG0335|consen 154 RALILAPTRELVDQIYNEARKFSYLS-GMKSVVVYGGTDLGAQLRFI-KRGCDILVATPGRLKDLIER-GKISLDNCKFL 230 (482)
T ss_pred ceEEEeCcHHHhhHHHHHHHhhcccc-cceeeeeeCCcchhhhhhhh-ccCccEEEecCchhhhhhhc-ceeehhhCcEE
Confidence 37999999999999999999996544 89999999999999998888 56999999999999999999 99999999999
Q ss_pred EEcccchhhc-cchHHHHHHHHHhCCC----CCeEEEEeecCChHHHHHHHhhCCC-CeEEEEccCCcccccccchhhcc
Q 030094 81 VLDEADRLLD-MGFQKQISYIISRLPK----LRRTGLFSATQTEAVEELSKAGLRN-PVRVEVRAESKSHHVSASSQQLA 154 (183)
Q Consensus 81 VvDEad~ll~-~~~~~~l~~i~~~l~~----~~Q~v~~SAT~~~~v~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~ 154 (183)
|+||||+|+| ++|.+++++|+...+. ++|+++||||++.++..++..|+.+ .+++.+..-
T Consensus 231 vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rv-------------- 296 (482)
T KOG0335|consen 231 VLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRV-------------- 296 (482)
T ss_pred EecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeee--------------
Confidence 9999999999 9999999999998854 7999999999999999999999996 888888887
Q ss_pred cCCCccCceEEEEEecCcchhhhhhccc
Q 030094 155 SSKTPLGLHLEVIWNVNQMRNHHNLLIC 182 (183)
Q Consensus 155 ~~~~~~~l~q~~i~~~~~~k~~~ll~ll 182 (183)
.....++.|.+++|.+.+|..+|+-+|
T Consensus 297 -g~~~~ni~q~i~~V~~~~kr~~Lldll 323 (482)
T KOG0335|consen 297 -GSTSENITQKILFVNEMEKRSKLLDLL 323 (482)
T ss_pred -ccccccceeEeeeecchhhHHHHHHHh
Confidence 677999999999999999999998776
No 15
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.97 E-value=9e-32 Score=217.44 Aligned_cols=162 Identities=33% Similarity=0.597 Sum_probs=143.3
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhh-----hCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCC
Q 030094 1 MGMIISPTRELSSQIYHVAQPFIS-----TLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFR 75 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~-----~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~ 75 (183)
++||+||+||||.|+++.+..+.+ .+|.++..+|.||.+..++.... +.|.||+|+|||||.+++.. +.+++.
T Consensus 248 ~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v-~~GvHivVATPGRL~DmL~K-K~~sLd 325 (610)
T KOG0341|consen 248 YGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVV-RRGVHIVVATPGRLMDMLAK-KIMSLD 325 (610)
T ss_pred eeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHH-hcCeeEEEcCcchHHHHHHH-hhccHH
Confidence 589999999999999999999976 56889999999999999999988 46999999999999999998 889999
Q ss_pred CceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhccc
Q 030094 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLAS 155 (183)
Q Consensus 76 ~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 155 (183)
-|+++++||||+|+++||.++++.|+..+...||+++||||+|..+..|++.-+-.|+.|++...+.
T Consensus 326 ~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGA------------- 392 (610)
T KOG0341|consen 326 ACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGA------------- 392 (610)
T ss_pred HHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccc-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999998743
Q ss_pred CCCccCceEEEEEecCcchhhhhh
Q 030094 156 SKTPLGLHLEVIWNVNQMRNHHNL 179 (183)
Q Consensus 156 ~~~~~~l~q~~i~~~~~~k~~~ll 179 (183)
..-++-|.+-+|..+.|..+|+
T Consensus 393 --AsldViQevEyVkqEaKiVylL 414 (610)
T KOG0341|consen 393 --ASLDVIQEVEYVKQEAKIVYLL 414 (610)
T ss_pred --cchhHHHHHHHHHhhhhhhhHH
Confidence 2334444455555555555554
No 16
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.97 E-value=9.7e-30 Score=215.87 Aligned_cols=154 Identities=29% Similarity=0.561 Sum_probs=144.9
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
+++|++||||+|.||.+.+.+++..+.+++|..+.||.....+...+ +.++|+||||||+..+++. +.+++++++++
T Consensus 95 q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl--k~~rIvIGtPGRi~qL~el-~~~n~s~vrlf 171 (980)
T KOG4284|consen 95 QKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL--KQTRIVIGTPGRIAQLVEL-GAMNMSHVRLF 171 (980)
T ss_pred eeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh--hhceEEecCchHHHHHHHh-cCCCccceeEE
Confidence 57999999999999999999999988899999999999999888887 3689999999999999999 99999999999
Q ss_pred EEcccchhhc-cchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCCc
Q 030094 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTP 159 (183)
Q Consensus 81 VvDEad~ll~-~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (183)
|+||||.|++ ..|.+++..|+..+|+.+|++.||||.+..+.++..+||++|.+|+.+.. ....
T Consensus 172 VLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~---------------d~~L 236 (980)
T KOG4284|consen 172 VLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNAD---------------DVQL 236 (980)
T ss_pred EeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccC---------------Ccee
Confidence 9999999998 56999999999999999999999999999999999999999999999888 6778
Q ss_pred cCceEEEEEecCc
Q 030094 160 LGLHLEVIWNVNQ 172 (183)
Q Consensus 160 ~~l~q~~i~~~~~ 172 (183)
-+|+|||+.+...
T Consensus 237 ~GikQyv~~~~s~ 249 (980)
T KOG4284|consen 237 FGIKQYVVAKCSP 249 (980)
T ss_pred echhheeeeccCC
Confidence 8999999987654
No 17
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.97 E-value=8.8e-30 Score=211.84 Aligned_cols=164 Identities=32% Similarity=0.534 Sum_probs=152.6
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
+|+||+||||||+||.+...+++... ++++..++||.+.+++--.+ ..||+|+||||++|.+-+.+ ..+-++.|.++
T Consensus 324 yaiilaptReLaqqIeeEt~kf~~~l-g~r~vsvigg~s~EEq~fql-s~gceiviatPgrLid~Len-r~lvl~qctyv 400 (673)
T KOG0333|consen 324 YAIILAPTRELAQQIEEETNKFGKPL-GIRTVSVIGGLSFEEQGFQL-SMGCEIVIATPGRLIDSLEN-RYLVLNQCTYV 400 (673)
T ss_pred eeeeechHHHHHHHHHHHHHHhcccc-cceEEEEecccchhhhhhhh-hccceeeecCchHHHHHHHH-HHHHhccCceE
Confidence 48999999999999999999999887 89999999999999997777 56999999999999999998 88889999999
Q ss_pred EEcccchhhccchHHHHHHHHHhCCCC-------------------------CeEEEEeecCChHHHHHHHhhCCCCeEE
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPKL-------------------------RRTGLFSATQTEAVEELSKAGLRNPVRV 135 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~~-------------------------~Q~v~~SAT~~~~v~~~~~~~~~~~~~i 135 (183)
|+||||+|+++||++++..++..+|.. +|+++||||+++.++.+++.||++|+.+
T Consensus 401 vldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~v 480 (673)
T KOG0333|consen 401 VLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVV 480 (673)
T ss_pred eccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEE
Confidence 999999999999999999999999621 6999999999999999999999999999
Q ss_pred EEccCCcccccccchhhcccCCCccCceEEEEEecCcchhhhhhccc
Q 030094 136 EVRAESKSHHVSASSQQLASSKTPLGLHLEVIWNVNQMRNHHNLLIC 182 (183)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~i~~~~~~k~~~ll~ll 182 (183)
.++.. ....+.++|.++.++..+|..+|+-+|
T Consensus 481 tig~~---------------gk~~~rveQ~v~m~~ed~k~kkL~eil 512 (673)
T KOG0333|consen 481 TIGSA---------------GKPTPRVEQKVEMVSEDEKRKKLIEIL 512 (673)
T ss_pred EeccC---------------CCCccchheEEEEecchHHHHHHHHHH
Confidence 99999 777899999999999999998887654
No 18
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.96 E-value=1.5e-28 Score=215.48 Aligned_cols=164 Identities=30% Similarity=0.512 Sum_probs=148.5
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
++|||+||||||.|+++.+.++.++.+++++..++||.+.+.+.+.+ ..+++|+||||+++.+++.+ +.+++++++++
T Consensus 76 ~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l-~~~~~IVVgTPgrl~d~l~r-~~l~l~~l~~l 153 (629)
T PRK11634 76 QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL-RQGPQIVVGTPGRLLDHLKR-GTLDLSKLSGL 153 (629)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh-cCCCCEEEECHHHHHHHHHc-CCcchhhceEE
Confidence 47999999999999999999998888889999999999988888877 46899999999999999988 88999999999
Q ss_pred EEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCCcc
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (183)
|+||||.|++++|..++..|++.+|..+|+++||||+++.+..+++.|+++|..|.+... .....
T Consensus 154 VlDEAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~---------------~~~~~ 218 (629)
T PRK11634 154 VLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSS---------------VTTRP 218 (629)
T ss_pred EeccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCc---------------cccCC
Confidence 999999999999999999999999999999999999999999999999999999988766 55667
Q ss_pred CceEEEEEecCcchhhhhhcc
Q 030094 161 GLHLEVIWNVNQMRNHHNLLI 181 (183)
Q Consensus 161 ~l~q~~i~~~~~~k~~~ll~l 181 (183)
++.|.|+.+...+|...|..+
T Consensus 219 ~i~q~~~~v~~~~k~~~L~~~ 239 (629)
T PRK11634 219 DISQSYWTVWGMRKNEALVRF 239 (629)
T ss_pred ceEEEEEEechhhHHHHHHHH
Confidence 788888888887777666543
No 19
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.96 E-value=1.8e-28 Score=208.94 Aligned_cols=163 Identities=35% Similarity=0.561 Sum_probs=147.7
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
++||++||||||.|+.+.++.+.++.+++++..++||.+...+...+. .+++|+||||+++.+++.+ +.+++++++++
T Consensus 74 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~-~~~~IvV~Tp~rl~~~l~~-~~~~l~~l~~l 151 (460)
T PRK11776 74 QALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE-HGAHIIVGTPGRILDHLRK-GTLDLDALNTL 151 (460)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc-CCCCEEEEChHHHHHHHHc-CCccHHHCCEE
Confidence 489999999999999999999988777899999999999988888774 6899999999999999988 78899999999
Q ss_pred EEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCCcc
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (183)
|+||||.|++.+|...+..+++.+|+.+|+++||||+++.+..++..++.+|..+.+... . ...
T Consensus 152 ViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~---------------~-~~~ 215 (460)
T PRK11776 152 VLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVEST---------------H-DLP 215 (460)
T ss_pred EEECHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcC---------------C-CCC
Confidence 999999999999999999999999999999999999999999999999999999987665 2 345
Q ss_pred CceEEEEEecCcchhhhhhcc
Q 030094 161 GLHLEVIWNVNQMRNHHNLLI 181 (183)
Q Consensus 161 ~l~q~~i~~~~~~k~~~ll~l 181 (183)
.+.|+|+.++..+|...+..+
T Consensus 216 ~i~~~~~~~~~~~k~~~l~~l 236 (460)
T PRK11776 216 AIEQRFYEVSPDERLPALQRL 236 (460)
T ss_pred CeeEEEEEeCcHHHHHHHHHH
Confidence 689999999988887766554
No 20
>PTZ00110 helicase; Provisional
Probab=99.96 E-value=2.8e-28 Score=211.32 Aligned_cols=164 Identities=32% Similarity=0.519 Sum_probs=145.1
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
+||||+||||||.|+++.+.+++... ++++..++||.....+...+ ..+++|+|+||++|.+++.. +..++++++++
T Consensus 205 ~~LIL~PTreLa~Qi~~~~~~~~~~~-~i~~~~~~gg~~~~~q~~~l-~~~~~IlVaTPgrL~d~l~~-~~~~l~~v~~l 281 (545)
T PTZ00110 205 IVLVLAPTRELAEQIREQCNKFGASS-KIRNTVAYGGVPKRGQIYAL-RRGVEILIACPGRLIDFLES-NVTNLRRVTYL 281 (545)
T ss_pred EEEEECChHHHHHHHHHHHHHHhccc-CccEEEEeCCCCHHHHHHHH-HcCCCEEEECHHHHHHHHHc-CCCChhhCcEE
Confidence 37999999999999999999998776 79999999999988887777 46899999999999999988 77889999999
Q ss_pred EEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCC-CCeEEEEccCCcccccccchhhcccCCCc
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLR-NPVRVEVRAESKSHHVSASSQQLASSKTP 159 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (183)
|+||||+|++++|...+..|+..+++++|+++||||++.++..+++.++. +|+.+.+.... ....
T Consensus 282 ViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~--------------l~~~ 347 (545)
T PTZ00110 282 VLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLD--------------LTAC 347 (545)
T ss_pred EeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCc--------------cccC
Confidence 99999999999999999999999999999999999999999999999886 68888876541 2345
Q ss_pred cCceEEEEEecCcchhhhhhcc
Q 030094 160 LGLHLEVIWNVNQMRNHHNLLI 181 (183)
Q Consensus 160 ~~l~q~~i~~~~~~k~~~ll~l 181 (183)
.+++|.++.++..+|...|..+
T Consensus 348 ~~i~q~~~~~~~~~k~~~L~~l 369 (545)
T PTZ00110 348 HNIKQEVFVVEEHEKRGKLKML 369 (545)
T ss_pred CCeeEEEEEEechhHHHHHHHH
Confidence 6788999888888887766554
No 21
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=3.3e-29 Score=201.77 Aligned_cols=163 Identities=31% Similarity=0.485 Sum_probs=151.3
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
||++++||||||.|+..+...++.+. ++++..+.||.....+...+...+++|+||||+++.++++. +.+..+.++++
T Consensus 96 qalilaPtreLa~qi~~v~~~lg~~~-~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~-~~l~~~~iKmf 173 (397)
T KOG0327|consen 96 QALILAPTRELAQQIQKVVRALGDHM-DVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNR-GSLSTDGIKMF 173 (397)
T ss_pred HHHHhcchHHHHHHHHHHHHhhhccc-ceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhcc-ccccccceeEE
Confidence 57899999999999999999998887 89999999999988776667677899999999999999998 78889999999
Q ss_pred EEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCCcc
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (183)
|+||||.|++.||.+++..|++++|++.|++++|||.+.++..+.++|+++|+.|.+... ..+.+
T Consensus 174 vlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~---------------~ltl~ 238 (397)
T KOG0327|consen 174 VLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKD---------------ELTLE 238 (397)
T ss_pred eecchHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecch---------------hhhhh
Confidence 999999999999999999999999999999999999999999999999999999999888 57799
Q ss_pred CceEEEEEecCcchhhhhhc
Q 030094 161 GLHLEVIWNVNQMRNHHNLL 180 (183)
Q Consensus 161 ~l~q~~i~~~~~~k~~~ll~ 180 (183)
.++|+|+.+..++|...|-.
T Consensus 239 gikq~~i~v~k~~k~~~l~d 258 (397)
T KOG0327|consen 239 GIKQFYINVEKEEKLDTLCD 258 (397)
T ss_pred heeeeeeeccccccccHHHH
Confidence 99999999999998776643
No 22
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=1.8e-28 Score=199.48 Aligned_cols=159 Identities=31% Similarity=0.466 Sum_probs=144.6
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
.|++.||||||.|+.-++.++. +. +.+..+++||.+..++...+ +.+.+|+|+||++|.++.-. +.++++++.++|
T Consensus 297 ~lvl~ptreLalqie~e~~kys-yn-g~ksvc~ygggnR~eqie~l-krgveiiiatPgrlndL~~~-n~i~l~siTYlV 372 (629)
T KOG0336|consen 297 VLVLTPTRELALQIEGEVKKYS-YN-GLKSVCVYGGGNRNEQIEDL-KRGVEIIIATPGRLNDLQMD-NVINLASITYLV 372 (629)
T ss_pred eEEEeccHHHHHHHHhHHhHhh-hc-CcceEEEecCCCchhHHHHH-hcCceEEeeCCchHhhhhhc-CeeeeeeeEEEE
Confidence 6899999999999999999984 43 89999999999999999999 56999999999999999877 889999999999
Q ss_pred EcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCCccC
Q 030094 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLG 161 (183)
Q Consensus 82 vDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (183)
+||||+||+++|+++++.|+--+.+++|+++.|||||+.+..++..|+++|+.+.+..-. -....+
T Consensus 373 lDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLd--------------L~a~~s 438 (629)
T KOG0336|consen 373 LDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLD--------------LVAVKS 438 (629)
T ss_pred ecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccc--------------eeeeee
Confidence 999999999999999999999999999999999999999999999999999999988762 445667
Q ss_pred ceEEEEEecCcchhhhh
Q 030094 162 LHLEVIWNVNQMRNHHN 178 (183)
Q Consensus 162 l~q~~i~~~~~~k~~~l 178 (183)
++|.+++..+.+|....
T Consensus 439 VkQ~i~v~~d~~k~~~~ 455 (629)
T KOG0336|consen 439 VKQNIIVTTDSEKLEIV 455 (629)
T ss_pred eeeeEEecccHHHHHHH
Confidence 99999887777777543
No 23
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=3.4e-29 Score=203.82 Aligned_cols=163 Identities=36% Similarity=0.531 Sum_probs=154.4
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
|+|+.||||||.|+.++.+.++++. ++++.+++||.+.+++...+ ..|||||++||+++..+.-. -.+.+++++++|
T Consensus 93 alilsptreLa~qtlkvvkdlgrgt-~lr~s~~~ggD~~eeqf~~l-~~npDii~ATpgr~~h~~ve-m~l~l~sveyVV 169 (529)
T KOG0337|consen 93 ALILSPTRELALQTLKVVKDLGRGT-KLRQSLLVGGDSIEEQFILL-NENPDIIIATPGRLLHLGVE-MTLTLSSVEYVV 169 (529)
T ss_pred eeeccCcHHHHHHHHHHHHHhcccc-chhhhhhcccchHHHHHHHh-ccCCCEEEecCceeeeeehh-eeccccceeeee
Confidence 7999999999999999999999887 99999999999999999888 56899999999999998777 458899999999
Q ss_pred EcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCCccC
Q 030094 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLG 161 (183)
Q Consensus 82 vDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (183)
+||||.++++||.+++..++.++|..+|+++||||+|..+-.+++.-+.+|+.|.++-+ ..+.+.
T Consensus 170 fdEadrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldve---------------tkise~ 234 (529)
T KOG0337|consen 170 FDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVE---------------TKISEL 234 (529)
T ss_pred ehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehh---------------hhcchh
Confidence 99999999999999999999999999999999999999999999999999999999988 778999
Q ss_pred ceEEEEEecCcchhhhhhccc
Q 030094 162 LHLEVIWNVNQMRNHHNLLIC 182 (183)
Q Consensus 162 l~q~~i~~~~~~k~~~ll~ll 182 (183)
++..|..+.+.+|..+|+.+|
T Consensus 235 lk~~f~~~~~a~K~aaLl~il 255 (529)
T KOG0337|consen 235 LKVRFFRVRKAEKEAALLSIL 255 (529)
T ss_pred hhhheeeeccHHHHHHHHHHH
Confidence 999999999999999998875
No 24
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.96 E-value=8.8e-28 Score=202.76 Aligned_cols=163 Identities=36% Similarity=0.549 Sum_probs=143.5
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
+||||+||||||.|+++.+..+.+.. ++++..++||.....+...+ ..++||+||||++|.+++.. +.+++++++++
T Consensus 85 ~~lil~PtreLa~Qi~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l-~~~~~IlV~TP~~l~~~l~~-~~~~l~~v~~l 161 (423)
T PRK04837 85 RALIMAPTRELAVQIHADAEPLAQAT-GLKLGLAYGGDGYDKQLKVL-ESGVDILIGTTGRLIDYAKQ-NHINLGAIQVV 161 (423)
T ss_pred eEEEECCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHh-cCCCCEEEECHHHHHHHHHc-CCcccccccEE
Confidence 48999999999999999999998877 89999999999888887777 46899999999999999987 78899999999
Q ss_pred EEcccchhhccchHHHHHHHHHhCCC--CCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCC
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKT 158 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~--~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (183)
|+||||.+++.+|..++..+++.++. .+|.++||||++..+..++..++.+|..+.+... ...
T Consensus 162 ViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~---------------~~~ 226 (423)
T PRK04837 162 VLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPE---------------QKT 226 (423)
T ss_pred EEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCC---------------CcC
Confidence 99999999999999999999999984 6789999999999999999999999999988766 445
Q ss_pred ccCceEEEEEecCcchhhhhhcc
Q 030094 159 PLGLHLEVIWNVNQMRNHHNLLI 181 (183)
Q Consensus 159 ~~~l~q~~i~~~~~~k~~~ll~l 181 (183)
..++++.++.+...+|...+..+
T Consensus 227 ~~~i~~~~~~~~~~~k~~~l~~l 249 (423)
T PRK04837 227 GHRIKEELFYPSNEEKMRLLQTL 249 (423)
T ss_pred CCceeEEEEeCCHHHHHHHHHHH
Confidence 66788888777777776655443
No 25
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.96 E-value=1.9e-27 Score=205.23 Aligned_cols=162 Identities=29% Similarity=0.525 Sum_probs=144.4
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.||||+||||||.|+++.++.+.+.. ++++..++||.....+...+ ..+++|+||||++|.+++.+ +.+.+++++++
T Consensus 198 ~aLIL~PTreLa~Qi~~~~~~l~~~~-~~~~~~~~gG~~~~~q~~~l-~~~~~IiV~TPgrL~~~l~~-~~~~l~~v~~l 274 (518)
T PLN00206 198 LAMVLTPTRELCVQVEDQAKVLGKGL-PFKTALVVGGDAMPQQLYRI-QQGVELIVGTPGRLIDLLSK-HDIELDNVSVL 274 (518)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHHHh-cCCCCEEEECHHHHHHHHHc-CCccchheeEE
Confidence 48999999999999999999998877 78999999999988888777 46899999999999999988 78899999999
Q ss_pred EEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCCcc
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (183)
|+||||.|++.+|...+..++..++ .+|+++||||++++++.+++.++.++..+.+... .....
T Consensus 275 ViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~---------------~~~~~ 338 (518)
T PLN00206 275 VLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNP---------------NRPNK 338 (518)
T ss_pred EeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCC---------------CCCCc
Confidence 9999999999999999999999885 6899999999999999999999999999988766 45566
Q ss_pred CceEEEEEecCcchhhhhhcc
Q 030094 161 GLHLEVIWNVNQMRNHHNLLI 181 (183)
Q Consensus 161 ~l~q~~i~~~~~~k~~~ll~l 181 (183)
.++|.+++++..+|...++.+
T Consensus 339 ~v~q~~~~~~~~~k~~~l~~~ 359 (518)
T PLN00206 339 AVKQLAIWVETKQKKQKLFDI 359 (518)
T ss_pred ceeEEEEeccchhHHHHHHHH
Confidence 788888888887777665543
No 26
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.95 E-value=2.8e-27 Score=201.43 Aligned_cols=159 Identities=33% Similarity=0.607 Sum_probs=141.7
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.||||+||||||.|+++.+..+.++. ++++..++||.+...+...+ ..++||+|+||++|.+++.. ..+++++++++
T Consensus 77 ~aLil~PtreLa~Qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l-~~~~~IiV~TP~rL~~~~~~-~~~~l~~v~~l 153 (456)
T PRK10590 77 RALILTPTRELAAQIGENVRDYSKYL-NIRSLVVFGGVSINPQMMKL-RGGVDVLVATPGRLLDLEHQ-NAVKLDQVEIL 153 (456)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccC-CCEEEEEECCcCHHHHHHHH-cCCCcEEEEChHHHHHHHHc-CCcccccceEE
Confidence 38999999999999999999998876 79999999999988887776 46899999999999999987 77899999999
Q ss_pred EEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCCcc
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (183)
|+||||.+++.+|...+..++..++..+|+++||||+++++..++.+++.+|..+.+... .....
T Consensus 154 ViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~---------------~~~~~ 218 (456)
T PRK10590 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR---------------NTASE 218 (456)
T ss_pred EeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecc---------------ccccc
Confidence 999999999999999999999999999999999999999999999999999999887665 44566
Q ss_pred CceEEEEEecCcchhhh
Q 030094 161 GLHLEVIWNVNQMRNHH 177 (183)
Q Consensus 161 ~l~q~~i~~~~~~k~~~ 177 (183)
++.|++..++...|...
T Consensus 219 ~i~~~~~~~~~~~k~~~ 235 (456)
T PRK10590 219 QVTQHVHFVDKKRKREL 235 (456)
T ss_pred ceeEEEEEcCHHHHHHH
Confidence 78888887776655443
No 27
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=2.3e-28 Score=195.47 Aligned_cols=165 Identities=29% Similarity=0.387 Sum_probs=145.9
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcC---CcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMD---VLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~---~~~l~~l 77 (183)
||+|+.||||||.|+.+.+..+++.. ++++..++||.+.-.+...+ ..+||++|+||||+..++..+. .+.++++
T Consensus 77 FalvlTPTrELA~QiaEQF~alGk~l-~lK~~vivGG~d~i~qa~~L-~~rPHvVvatPGRlad~l~sn~~~~~~~~~rl 154 (442)
T KOG0340|consen 77 FALVLTPTRELALQIAEQFIALGKLL-NLKVSVIVGGTDMIMQAAIL-SDRPHVVVATPGRLADHLSSNLGVCSWIFQRL 154 (442)
T ss_pred eEEEecchHHHHHHHHHHHHHhcccc-cceEEEEEccHHHhhhhhhc-ccCCCeEecCccccccccccCCccchhhhhce
Confidence 68999999999999999999998777 99999999999988887777 5689999999999999998742 3458999
Q ss_pred eEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCe--EEEEccCCcccccccchhhccc
Q 030094 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPV--RVEVRAESKSHHVSASSQQLAS 155 (183)
Q Consensus 78 ~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~ 155 (183)
+++|+||||++++..|.+.++.+++.+|+.||+++||||+++.+.++..-....+. .....+.
T Consensus 155 kflVlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~--------------- 219 (442)
T KOG0340|consen 155 KFLVLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDG--------------- 219 (442)
T ss_pred eeEEecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCC---------------
Confidence 99999999999999999999999999999999999999999999988887777643 3333333
Q ss_pred CCCccCceEEEEEecCcchhhhhhccc
Q 030094 156 SKTPLGLHLEVIWNVNQMRNHHNLLIC 182 (183)
Q Consensus 156 ~~~~~~l~q~~i~~~~~~k~~~ll~ll 182 (183)
..+++++.|.|++|+...|..+|..+|
T Consensus 220 vstvetL~q~yI~~~~~vkdaYLv~~L 246 (442)
T KOG0340|consen 220 VSTVETLYQGYILVSIDVKDAYLVHLL 246 (442)
T ss_pred CCchhhhhhheeecchhhhHHHHHHHH
Confidence 789999999999999999998887764
No 28
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.95 E-value=4.4e-27 Score=204.77 Aligned_cols=164 Identities=34% Similarity=0.560 Sum_probs=145.3
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.+|||+||||||.|+++.+.++.... ++++..++|+.....+...+ ..++||+||||++|.+++.+.+.++++.++++
T Consensus 86 raLIl~PTreLa~Qi~~~~~~l~~~~-~i~v~~l~Gg~~~~~q~~~l-~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~l 163 (572)
T PRK04537 86 RALILAPTRELAIQIHKDAVKFGADL-GLRFALVYGGVDYDKQRELL-QQGVDVIIATPGRLIDYVKQHKVVSLHACEIC 163 (572)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHH-hCCCCEEEECHHHHHHHHHhccccchhheeee
Confidence 38999999999999999999998876 89999999999988887776 46899999999999999987345789999999
Q ss_pred EEcccchhhccchHHHHHHHHHhCCC--CCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCC
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKT 158 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~--~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (183)
|+||||.|++.+|..++..+++.++. .+|+++||||++..+..+...++.+|..+.+... ...
T Consensus 164 ViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~---------------~~~ 228 (572)
T PRK04537 164 VLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETE---------------TIT 228 (572)
T ss_pred EecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccc---------------ccc
Confidence 99999999999999999999999986 7899999999999999999999999988877666 456
Q ss_pred ccCceEEEEEecCcchhhhhhcc
Q 030094 159 PLGLHLEVIWNVNQMRNHHNLLI 181 (183)
Q Consensus 159 ~~~l~q~~i~~~~~~k~~~ll~l 181 (183)
..++.|+++.+...+|...++.+
T Consensus 229 ~~~i~q~~~~~~~~~k~~~L~~l 251 (572)
T PRK04537 229 AARVRQRIYFPADEEKQTLLLGL 251 (572)
T ss_pred ccceeEEEEecCHHHHHHHHHHH
Confidence 67889999888888887766654
No 29
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.95 E-value=1.2e-27 Score=211.62 Aligned_cols=165 Identities=33% Similarity=0.513 Sum_probs=151.0
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhc--CCcCCCCce
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM--DVLDFRNLE 78 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~--~~~~l~~l~ 78 (183)
+|||++||||||.||++.++.|+... ++++.+++||....+++..++. ++.|+||||||..+++..+ +-.++.++.
T Consensus 440 i~li~aPtrela~QI~r~~~kf~k~l-~ir~v~vygg~~~~~qiaelkR-g~eIvV~tpGRmiD~l~~n~grvtnlrR~t 517 (997)
T KOG0334|consen 440 IALILAPTRELAMQIHREVRKFLKLL-GIRVVCVYGGSGISQQIAELKR-GAEIVVCTPGRMIDILCANSGRVTNLRRVT 517 (997)
T ss_pred eEEEEcCCHHHHHHHHHHHHHHHhhc-CceEEEecCCccHHHHHHHHhc-CCceEEeccchhhhhHhhcCCccccccccc
Confidence 58999999999999999999999886 9999999999999999999964 6999999999999998752 223567777
Q ss_pred EEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCC
Q 030094 79 ILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKT 158 (183)
Q Consensus 79 ~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (183)
++|+||||+|++++|.+++..|++.++..+|+++||||++..++.++...++.|+.|.+..+ ...
T Consensus 518 ~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~---------------svV 582 (997)
T KOG0334|consen 518 YLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGR---------------SVV 582 (997)
T ss_pred eeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccc---------------eeE
Confidence 99999999999999999999999999999999999999999999999999999999998877 778
Q ss_pred ccCceEEEEEec-Ccchhhhhhccc
Q 030094 159 PLGLHLEVIWNV-NQMRNHHNLLIC 182 (183)
Q Consensus 159 ~~~l~q~~i~~~-~~~k~~~ll~ll 182 (183)
...+.|.+.+|. ..+|+..|+.||
T Consensus 583 ~k~V~q~v~V~~~e~eKf~kL~eLl 607 (997)
T KOG0334|consen 583 CKEVTQVVRVCAIENEKFLKLLELL 607 (997)
T ss_pred eccceEEEEEecCchHHHHHHHHHH
Confidence 889999999999 888999888765
No 30
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.95 E-value=3.3e-27 Score=197.49 Aligned_cols=165 Identities=25% Similarity=0.444 Sum_probs=140.2
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCc--CCCCce
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVL--DFRNLE 78 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~--~l~~l~ 78 (183)
+|||++||||||.||.+.+..++.+. +++++.++||.....|.+.+. ..|||+|||||||++++..++.+ +++.++
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t-~i~v~si~GGLavqKQqRlL~-~~p~IVVATPGRlweli~e~n~~l~~~k~vk 342 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKT-QIRVASITGGLAVQKQQRLLN-QRPDIVVATPGRLWELIEEDNTHLGNFKKVK 342 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhcccc-CeEEEEeechhHHHHHHHHHh-cCCCEEEecchHHHHHHHhhhhhhhhhhhce
Confidence 48999999999999999999998865 999999999999999988885 58999999999999999983332 589999
Q ss_pred EEEEcccchhhccchHHHHHHHHHhCC-----CCCeEEEEeecCChH---------------------HHHHHHh--hCC
Q 030094 79 ILVLDEADRLLDMGFQKQISYIISRLP-----KLRRTGLFSATQTEA---------------------VEELSKA--GLR 130 (183)
Q Consensus 79 ~lVvDEad~ll~~~~~~~l~~i~~~l~-----~~~Q~v~~SAT~~~~---------------------v~~~~~~--~~~ 130 (183)
++|+||||+|+..|+-..+..|++.+. +.+|++.||||++-. ++.+++. +..
T Consensus 343 cLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~ 422 (731)
T KOG0347|consen 343 CLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRG 422 (731)
T ss_pred EEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccC
Confidence 999999999999999999999998885 568999999999732 3334443 344
Q ss_pred CCeEEEEccCCcccccccchhhcccCCCccCceEEEEEecCcchhhhhhccc
Q 030094 131 NPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEVIWNVNQMRNHHNLLIC 182 (183)
Q Consensus 131 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~i~~~~~~k~~~ll~ll 182 (183)
+|.+|.+..+ ..+..++....|.|+..+|.-+|.++|
T Consensus 423 kpkiiD~t~q---------------~~ta~~l~Es~I~C~~~eKD~ylyYfl 459 (731)
T KOG0347|consen 423 KPKIIDLTPQ---------------SATASTLTESLIECPPLEKDLYLYYFL 459 (731)
T ss_pred CCeeEecCcc---------------hhHHHHHHHHhhcCCccccceeEEEEE
Confidence 7788888887 777888888889998888888887765
No 31
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=9.3e-26 Score=193.00 Aligned_cols=162 Identities=35% Similarity=0.496 Sum_probs=142.3
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
+||||+||||||.|+++.++.+.++. ++++..++||.+...+.+.+...+++|+|+||++|..++.. ....+++++++
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~-~~~~l~~l~~l 241 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYT-GLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQR-GEVHLDMVEVM 241 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccC-CCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHc-CCcccccCceE
Confidence 37999999999999999999998876 89999999999888888877667899999999999999887 77889999999
Q ss_pred EEcccchhhccchHHHHHHHHHhCCC--CCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCC
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKT 158 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~--~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (183)
|+||||.+++.+|...+..+++.++. .+|++++|||++.++..+++.++.+|..+.+..+ ...
T Consensus 242 ViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~---------------~~~ 306 (475)
T PRK01297 242 VLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPE---------------NVA 306 (475)
T ss_pred EechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccC---------------cCC
Confidence 99999999999999999999999864 6799999999999999999999999999887766 445
Q ss_pred ccCceEEEEEecCcchhhhhh
Q 030094 159 PLGLHLEVIWNVNQMRNHHNL 179 (183)
Q Consensus 159 ~~~l~q~~i~~~~~~k~~~ll 179 (183)
..++.|+++.+...+|...+.
T Consensus 307 ~~~~~~~~~~~~~~~k~~~l~ 327 (475)
T PRK01297 307 SDTVEQHVYAVAGSDKYKLLY 327 (475)
T ss_pred CCcccEEEEEecchhHHHHHH
Confidence 566777777777777665544
No 32
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.94 E-value=1.6e-25 Score=189.54 Aligned_cols=153 Identities=31% Similarity=0.484 Sum_probs=136.8
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
+||++||+|||.|+++.+..+..+. ++++..++||.....+...+ ..+++|+||||++|.+++.. +.+++++++++|
T Consensus 76 ~lil~Pt~eLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l-~~~~~IlV~Tp~rl~~~~~~-~~~~~~~v~~lV 152 (434)
T PRK11192 76 ILILTPTRELAMQVADQARELAKHT-HLDIATITGGVAYMNHAEVF-SENQDIVVATPGRLLQYIKE-ENFDCRAVETLI 152 (434)
T ss_pred EEEECCcHHHHHHHHHHHHHHHccC-CcEEEEEECCCCHHHHHHHh-cCCCCEEEEChHHHHHHHHc-CCcCcccCCEEE
Confidence 7999999999999999999998877 89999999999888877666 46899999999999999988 889999999999
Q ss_pred EcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCCh-HHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCCcc
Q 030094 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE-AVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (183)
Q Consensus 82 vDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~-~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (183)
+||||.|++++|...+..+...++..+|+++||||++. .+..+...++.+|..+.+... .....
T Consensus 153 iDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~---------------~~~~~ 217 (434)
T PRK11192 153 LDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPS---------------RRERK 217 (434)
T ss_pred EECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCC---------------ccccc
Confidence 99999999999999999999999999999999999985 588999999999999987766 44566
Q ss_pred CceEEEEEecCc
Q 030094 161 GLHLEVIWNVNQ 172 (183)
Q Consensus 161 ~l~q~~i~~~~~ 172 (183)
++.|+++.++..
T Consensus 218 ~i~~~~~~~~~~ 229 (434)
T PRK11192 218 KIHQWYYRADDL 229 (434)
T ss_pred CceEEEEEeCCH
Confidence 778888777653
No 33
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=8.7e-26 Score=187.18 Aligned_cols=169 Identities=25% Similarity=0.394 Sum_probs=146.7
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCC----cEEEeCcHHHHHHHHhcCCcCCCC
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGA----NLLIGTPGRLYDIMERMDVLDFRN 76 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~----~IiV~TP~~l~~~l~~~~~~~l~~ 76 (183)
.|+|++|||+|+.|+++.+.+++... ++.|+.+.|..+.+.+.+.+.+..+ ||+|+|||||.+++.+++++++++
T Consensus 217 RavVivPtr~L~~QV~~~f~~~~~~t-gL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~ 295 (620)
T KOG0350|consen 217 RAVVIVPTRELALQVYDTFKRLNSGT-GLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKH 295 (620)
T ss_pred EEEEEeeHHHHHHHHHHHHHHhccCC-ceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhh
Confidence 48999999999999999999999887 8999999999999999999977677 999999999999999889999999
Q ss_pred ceEEEEcccchhhccchHHHHHHHHHhCCC----------------------------------CCeEEEEeecCChHHH
Q 030094 77 LEILVLDEADRLLDMGFQKQISYIISRLPK----------------------------------LRRTGLFSATQTEAVE 122 (183)
Q Consensus 77 l~~lVvDEad~ll~~~~~~~l~~i~~~l~~----------------------------------~~Q~v~~SAT~~~~v~ 122 (183)
++++|+||||+|++..|.+++-.++..+.. .-+.++||||++..-.
T Consensus 296 LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~ 375 (620)
T KOG0350|consen 296 LRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPS 375 (620)
T ss_pred ceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChH
Confidence 999999999999999999888887766521 1268899999999999
Q ss_pred HHHHhhCCCCeEEEEccCCcccccccchhhcccCCCccCceEEEEEecCcchhhhhhcc
Q 030094 123 ELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEVIWNVNQMRNHHNLLI 181 (183)
Q Consensus 123 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~i~~~~~~k~~~ll~l 181 (183)
.+...-+..|..+.+... .++.+.+|+.++|+++.++...|...+..+
T Consensus 376 Kl~~l~l~~Prl~~v~~~-----------~~~ryslp~~l~~~~vv~~~~~kpl~~~~l 423 (620)
T KOG0350|consen 376 KLKDLTLHIPRLFHVSKP-----------LIGRYSLPSSLSHRLVVTEPKFKPLAVYAL 423 (620)
T ss_pred HHhhhhcCCCceEEeecc-----------cceeeecChhhhhceeecccccchHhHHHH
Confidence 999999999987776532 123489999999999999988877666543
No 34
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=1.6e-25 Score=180.21 Aligned_cols=159 Identities=26% Similarity=0.376 Sum_probs=139.3
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
||+.|+||||||.|+.+++.+++++. ++++.+...|...+ +-+. -..+|+|||||.+.+++..-+-++++.++.+
T Consensus 162 Q~iCLaPtrELA~Q~~eVv~eMGKf~-~ita~yair~sk~~-rG~~---i~eqIviGTPGtv~Dlm~klk~id~~kikvf 236 (477)
T KOG0332|consen 162 QCICLAPTRELAPQTGEVVEEMGKFT-ELTASYAIRGSKAK-RGNK---LTEQIVIGTPGTVLDLMLKLKCIDLEKIKVF 236 (477)
T ss_pred CceeeCchHHHHHHHHHHHHHhcCce-eeeEEEEecCcccc-cCCc---chhheeeCCCccHHHHHHHHHhhChhhceEE
Confidence 68889999999999999999999887 89888887766221 1111 2358999999999999987677899999999
Q ss_pred EEcccchhhc-cchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCCc
Q 030094 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTP 159 (183)
Q Consensus 81 VvDEad~ll~-~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (183)
|+||||.|++ .||.++-..|.+.+|+++|.++||||+.+.++.|+.+..+||..+.+..+ ....
T Consensus 237 VlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~e---------------el~L 301 (477)
T KOG0332|consen 237 VLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKRE---------------ELAL 301 (477)
T ss_pred EecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehh---------------hccc
Confidence 9999999997 47999999999999999999999999999999999999999999999999 7889
Q ss_pred cCceEEEEEecCcc-hhhhhh
Q 030094 160 LGLHLEVIWNVNQM-RNHHNL 179 (183)
Q Consensus 160 ~~l~q~~i~~~~~~-k~~~ll 179 (183)
.+|+|+|+.|..++ |+..|.
T Consensus 302 ~~IkQlyv~C~~~~~K~~~l~ 322 (477)
T KOG0332|consen 302 DNIKQLYVLCACRDDKYQALV 322 (477)
T ss_pred cchhhheeeccchhhHHHHHH
Confidence 99999999997554 777654
No 35
>PTZ00424 helicase 45; Provisional
Probab=99.91 E-value=3.7e-23 Score=173.10 Aligned_cols=153 Identities=34% Similarity=0.581 Sum_probs=133.2
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.+||++||+|||.|+++.+..++... ++++..+.|+.....+...+ ..+++|+||||+++.+++.+ +.+.+++++++
T Consensus 98 ~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~i~lv 174 (401)
T PTZ00424 98 QALILAPTRELAQQIQKVVLALGDYL-KVRCHACVGGTVVRDDINKL-KAGVHMVVGTPGRVYDMIDK-RHLRVDDLKLF 174 (401)
T ss_pred eEEEECCCHHHHHHHHHHHHHHhhhc-CceEEEEECCcCHHHHHHHH-cCCCCEEEECcHHHHHHHHh-CCcccccccEE
Confidence 37999999999999999999998765 78888899998887777766 45799999999999999987 77889999999
Q ss_pred EEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCCcc
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (183)
|+||||.+++.+|...+..+++.++++.|++++|||+++++..+...++.+|..+.+... .....
T Consensus 175 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~ 239 (401)
T PTZ00424 175 ILDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKD---------------ELTLE 239 (401)
T ss_pred EEecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCC---------------CcccC
Confidence 999999999999999999999999999999999999999999999999999988876554 33455
Q ss_pred CceEEEEEecC
Q 030094 161 GLHLEVIWNVN 171 (183)
Q Consensus 161 ~l~q~~i~~~~ 171 (183)
+++++++.++.
T Consensus 240 ~~~~~~~~~~~ 250 (401)
T PTZ00424 240 GIRQFYVAVEK 250 (401)
T ss_pred CceEEEEecCh
Confidence 66666666654
No 36
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.88 E-value=1.9e-21 Score=148.53 Aligned_cols=131 Identities=46% Similarity=0.767 Sum_probs=119.4
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
++|++||++|+.|+.+.++.+.+.. ++++..+.|+....+....+ ..+++|+|+||+++..++.+ +..++++++++|
T Consensus 72 viii~p~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~T~~~l~~~l~~-~~~~~~~l~~lI 148 (203)
T cd00268 72 ALILAPTRELALQIAEVARKLGKHT-NLKVVVIYGGTSIDKQIRKL-KRGPHIVVATPGRLLDLLER-GKLDLSKVKYLV 148 (203)
T ss_pred EEEEcCCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHh-cCCCCEEEEChHHHHHHHHc-CCCChhhCCEEE
Confidence 7999999999999999999997765 78899999988877666665 35899999999999999987 668899999999
Q ss_pred EcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEE
Q 030094 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRV 135 (183)
Q Consensus 82 vDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i 135 (183)
+||+|.+.+.++...+..+.+.+++.+|++++|||+++.+..++..++.+|+.|
T Consensus 149 vDE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 149 LDEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred EeChHHhhccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 999999998889999999999999999999999999999999999999999887
No 37
>PRK09401 reverse gyrase; Reviewed
Probab=99.86 E-value=6.1e-21 Score=176.35 Aligned_cols=155 Identities=17% Similarity=0.163 Sum_probs=119.3
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcch-----HHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCC
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEV-----KADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFR 75 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~-----~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~ 75 (183)
+++||+||||||.|+++.+++++... ++.+..++|+... +++...+.++++||+||||++|.+++. .+...
T Consensus 125 ~alIL~PTreLa~Qi~~~l~~l~~~~-~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~---~l~~~ 200 (1176)
T PRK09401 125 KSYIIFPTRLLVEQVVEKLEKFGEKV-GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD---ELPKK 200 (1176)
T ss_pred eEEEEeccHHHHHHHHHHHHHHhhhc-CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH---hcccc
Confidence 48999999999999999999998876 7888888877542 333344444579999999999999875 35667
Q ss_pred CceEEEEcccchhhc-----------cchH-HHHHHHHHhCCC------------------------CCeEEEEeecCCh
Q 030094 76 NLEILVLDEADRLLD-----------MGFQ-KQISYIISRLPK------------------------LRRTGLFSATQTE 119 (183)
Q Consensus 76 ~l~~lVvDEad~ll~-----------~~~~-~~l~~i~~~l~~------------------------~~Q~v~~SAT~~~ 119 (183)
+++++|+||||++++ .||. +++..+++.++. .+|+++||||+++
T Consensus 201 ~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~ 280 (1176)
T PRK09401 201 KFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRP 280 (1176)
T ss_pred ccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCc
Confidence 799999999999996 5774 788888887764 6899999999987
Q ss_pred H-HHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCCccCceEEEEEecCcchhhhhh
Q 030094 120 A-VEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEVIWNVNQMRNHHNL 179 (183)
Q Consensus 120 ~-v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~i~~~~~~k~~~ll 179 (183)
+ +.. ..++++..+.+... .....++.|.|+.++ +|...+.
T Consensus 281 ~~~~~---~l~~~ll~~~v~~~---------------~~~~rnI~~~yi~~~--~k~~~L~ 321 (1176)
T PRK09401 281 RGNRV---KLFRELLGFEVGSP---------------VFYLRNIVDSYIVDE--DSVEKLV 321 (1176)
T ss_pred cchHH---HHhhccceEEecCc---------------ccccCCceEEEEEcc--cHHHHHH
Confidence 5 332 34566666776655 446788999998776 4444443
No 38
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.86 E-value=6.7e-21 Score=169.51 Aligned_cols=131 Identities=18% Similarity=0.206 Sum_probs=111.1
Q ss_pred EEE-EeCcHHHHHHHHHHHHHhhhhCC----------------------CceEEEEEcCcchHHHHHHHHhcCCcEEEeC
Q 030094 2 GMI-ISPTRELSSQIYHVAQPFISTLP----------------------DVKSVLLVGGVEVKADVKKIEEEGANLLIGT 58 (183)
Q Consensus 2 alI-l~PtreLa~Qi~~~~~~l~~~~~----------------------~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~T 58 (183)
+|| ++||||||.|+++.+++++++++ ++++..++||.+.+.+...+ ..+|+|||||
T Consensus 64 rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l-~~~p~IIVgT 142 (844)
T TIGR02621 64 RLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLD-PHRPAVIVGT 142 (844)
T ss_pred eEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhc-CCCCcEEEEC
Confidence 566 56999999999999999998663 48999999999999898877 5789999999
Q ss_pred cHHHHHHHHhcCCcC----------------CCCceEEEEcccchhhccchHHHHHHHHHhC--CCC---CeEEEEeecC
Q 030094 59 PGRLYDIMERMDVLD----------------FRNLEILVLDEADRLLDMGFQKQISYIISRL--PKL---RRTGLFSATQ 117 (183)
Q Consensus 59 P~~l~~~l~~~~~~~----------------l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l--~~~---~Q~v~~SAT~ 117 (183)
+ +++.+ +.++ +++++++|+|||| ++++|.+.+..|++.+ ++. +|+++||||+
T Consensus 143 ~----D~i~s-r~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~ 215 (844)
T TIGR02621 143 V----DMIGS-RLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATS 215 (844)
T ss_pred H----HHHcC-CccccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCC
Confidence 5 67766 5552 7899999999999 6789999999999975 432 6999999999
Q ss_pred ChHHHHHHHhhCCCCeEEEEccC
Q 030094 118 TEAVEELSKAGLRNPVRVEVRAE 140 (183)
Q Consensus 118 ~~~v~~~~~~~~~~~~~i~~~~~ 140 (183)
+.++..+...++.+|..+.+..+
T Consensus 216 p~ei~~l~~~~~~~p~~i~V~~~ 238 (844)
T TIGR02621 216 RTDGPDRTTLLSAEDYKHPVLKK 238 (844)
T ss_pred CccHHHHHHHHccCCceeecccc
Confidence 99999999999988887766544
No 39
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.82 E-value=4.5e-19 Score=131.23 Aligned_cols=121 Identities=34% Similarity=0.540 Sum_probs=103.1
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
+++++|+++|+.|+++.+.++... +++++..++|+.....+.......+++|+|+||+++.+++.. +..++.+++++|
T Consensus 47 ~lii~P~~~l~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~-~~~~~~~~~~iV 124 (169)
T PF00270_consen 47 VLIIVPTRALAEQQFERLRKFFSN-TNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISN-GKINISRLSLIV 124 (169)
T ss_dssp EEEEESSHHHHHHHHHHHHHHTTT-TTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHT-TSSTGTTESEEE
T ss_pred EEEEeecccccccccccccccccc-cccccccccccccccccccccccccccccccCcchhhccccc-cccccccceeec
Confidence 789999999999999999999876 478999999988866343333356799999999999999988 556888899999
Q ss_pred EcccchhhccchHHHHHHHHHhCC--CCCeEEEEeecCChHHHHH
Q 030094 82 LDEADRLLDMGFQKQISYIISRLP--KLRRTGLFSATQTEAVEEL 124 (183)
Q Consensus 82 vDEad~ll~~~~~~~l~~i~~~l~--~~~Q~v~~SAT~~~~v~~~ 124 (183)
+||+|.+.+.++...+..+++.+. ++.|++++|||+++.++.+
T Consensus 125 iDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~~~~~~~ 169 (169)
T PF00270_consen 125 IDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSATLPSNVEKL 169 (169)
T ss_dssp EETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEESSSTHHHHHH
T ss_pred cCcccccccccHHHHHHHHHHHhcCCCCCcEEEEeeCCChhHhhC
Confidence 999999998788889999999884 3589999999999777653
No 40
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.79 E-value=2e-19 Score=147.97 Aligned_cols=154 Identities=29% Similarity=0.511 Sum_probs=136.5
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhC--CCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTL--PDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~--~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
.|+|+-|+||||.|++..++++-.+. |.++..++.||...+.|...+. .|.||+||||+|+.+++.. +.+.+++++
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~-~g~~ivvGtpgRl~~~is~-g~~~lt~cr 365 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLK-DGTHIVVGTPGRLLQPISK-GLVTLTHCR 365 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhh-cCceeeecCchhhhhhhhc-cceeeeeeE
Confidence 48999999999999999888886655 5677778999999999999884 6899999999999999988 889999999
Q ss_pred EEEEcccchhhccchHHHHHHHHHhCCC------CCeEEEEeecCC-hHHHHHHHhhCCCCeEEEEccCCcccccccchh
Q 030094 79 ILVLDEADRLLDMGFQKQISYIISRLPK------LRRTGLFSATQT-EAVEELSKAGLRNPVRVEVRAESKSHHVSASSQ 151 (183)
Q Consensus 79 ~lVvDEad~ll~~~~~~~l~~i~~~l~~------~~Q~v~~SAT~~-~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 151 (183)
++|+||||.++++++.+.+.++...+|+ ..|.+++|||+. -++..+..+.|.-|..+.+..+
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkge----------- 434 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGE----------- 434 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccc-----------
Confidence 9999999999999999999999999874 469999999985 4688889999999999999888
Q ss_pred hcccCCCccCceEEEEEecC
Q 030094 152 QLASSKTPLGLHLEVIWNVN 171 (183)
Q Consensus 152 ~~~~~~~~~~l~q~~i~~~~ 171 (183)
...|+++.|.+..+.+
T Consensus 435 ----D~vpetvHhvv~lv~p 450 (725)
T KOG0349|consen 435 ----DLVPETVHHVVKLVCP 450 (725)
T ss_pred ----cccchhhccceeecCC
Confidence 7888998888876543
No 41
>PRK14701 reverse gyrase; Provisional
Probab=99.79 E-value=2.7e-18 Score=162.29 Aligned_cols=154 Identities=19% Similarity=0.194 Sum_probs=115.5
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCC-CceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCC
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLP-DVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRN 76 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~-~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~ 76 (183)
++|||+||||||.|+++.++.++.... ++++..+.|+.+.+++.. .+..+.+||+||||++|.+.+.. . .. .+
T Consensus 124 ~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~-l-~~-~~ 200 (1638)
T PRK14701 124 KCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPE-M-KH-LK 200 (1638)
T ss_pred eEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHH-H-hh-CC
Confidence 489999999999999999999987652 467788889888766543 34445699999999999988765 2 22 78
Q ss_pred ceEEEEcccchhhc-----------cchHHHHHH----HHH----------------------hCCCCCe-EEEEeecCC
Q 030094 77 LEILVLDEADRLLD-----------MGFQKQISY----IIS----------------------RLPKLRR-TGLFSATQT 118 (183)
Q Consensus 77 l~~lVvDEad~ll~-----------~~~~~~l~~----i~~----------------------~l~~~~Q-~v~~SAT~~ 118 (183)
++++|+||||.|++ .||.+++.. +++ .+++.+| .++||||.+
T Consensus 201 i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~ 280 (1638)
T PRK14701 201 FDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGK 280 (1638)
T ss_pred CCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCC
Confidence 99999999999986 478777764 432 2355666 677999999
Q ss_pred hHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCCccCceEEEEEecCcch
Q 030094 119 EAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEVIWNVNQMR 174 (183)
Q Consensus 119 ~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~i~~~~~~k 174 (183)
+. ... ..+++++..+.++.. .....++.|.|+.++..+|
T Consensus 281 ~r-~~~-~~l~~~~l~f~v~~~---------------~~~lr~i~~~yi~~~~~~k 319 (1638)
T PRK14701 281 AK-GDR-VKLYRELLGFEVGSG---------------RSALRNIVDVYLNPEKIIK 319 (1638)
T ss_pred ch-hHH-HHHhhcCeEEEecCC---------------CCCCCCcEEEEEECCHHHH
Confidence 75 112 234578888887666 5567889999988765544
No 42
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.78 E-value=4.2e-18 Score=157.77 Aligned_cols=148 Identities=22% Similarity=0.244 Sum_probs=108.0
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEE---EEEcCcchHHHH---HHHHhcCCcEEEeCcHHHHHHHHhcCCcCC
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSV---LLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDF 74 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~---~~~g~~~~~~~~---~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l 74 (183)
+++||+||||||.|+++.+++++... ++++. .++||.+..++. ..+.++++||+||||++|.+++.. +..
T Consensus 123 ~vLIL~PTreLa~Qi~~~l~~l~~~~-~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~---l~~ 198 (1171)
T TIGR01054 123 RCYIILPTTLLVIQVAEKISSLAEKA-GVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE---LGP 198 (1171)
T ss_pred eEEEEeCHHHHHHHHHHHHHHHHHhc-CCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH---hcC
Confidence 48999999999999999999998765 55443 466887765543 334445699999999999998865 222
Q ss_pred CCceEEEEcccchhhc-----------cchHHH-HHHHH----------------------HhCCCCCe--EEEEeec-C
Q 030094 75 RNLEILVLDEADRLLD-----------MGFQKQ-ISYII----------------------SRLPKLRR--TGLFSAT-Q 117 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~-----------~~~~~~-l~~i~----------------------~~l~~~~Q--~v~~SAT-~ 117 (183)
+++++|+||||.|++ .||.++ ++.++ +.+++++| .++|||| .
T Consensus 199 -~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~ 277 (1171)
T TIGR01054 199 -KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGR 277 (1171)
T ss_pred -CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCC
Confidence 899999999999998 577653 55543 34456666 5679999 5
Q ss_pred ChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCCccCceEEEEEecC
Q 030094 118 TEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLGLHLEVIWNVN 171 (183)
Q Consensus 118 ~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~i~~~~ 171 (183)
+..+. ..+++++..+.+... .....++.|.|+.++.
T Consensus 278 p~~~~---~~l~r~ll~~~v~~~---------------~~~~r~I~~~~~~~~~ 313 (1171)
T TIGR01054 278 PRGKR---AKLFRELLGFEVGGG---------------SDTLRNVVDVYVEDED 313 (1171)
T ss_pred ccccH---HHHcccccceEecCc---------------cccccceEEEEEeccc
Confidence 54433 345677777777665 5567889999886654
No 43
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.77 E-value=1.1e-17 Score=149.57 Aligned_cols=129 Identities=18% Similarity=0.233 Sum_probs=98.5
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHh-cC--CcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-MD--VLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~-~~--~~~l~~l 77 (183)
.||||+||||||.|+++.++++. . .++++..+.|+.+. ++...+ ..+++|+|+||++|...+-. .. ...++++
T Consensus 83 ~aL~l~PtraLa~q~~~~l~~l~-~-~~i~v~~~~Gdt~~-~~r~~i-~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l 158 (742)
T TIGR03817 83 TALYLAPTKALAADQLRAVRELT-L-RGVRPATYDGDTPT-EERRWA-REHARYVLTNPDMLHRGILPSHARWARFLRRL 158 (742)
T ss_pred EEEEEcChHHHHHHHHHHHHHhc-c-CCeEEEEEeCCCCH-HHHHHH-hcCCCEEEEChHHHHHhhccchhHHHHHHhcC
Confidence 48999999999999999999996 3 37888777777664 344444 45799999999998753321 01 1237899
Q ss_pred eEEEEcccchhhccchHHHHHHHHHhC-------CCCCeEEEEeecCChHHHHHHHhhCCCCeEE
Q 030094 78 EILVLDEADRLLDMGFQKQISYIISRL-------PKLRRTGLFSATQTEAVEELSKAGLRNPVRV 135 (183)
Q Consensus 78 ~~lVvDEad~ll~~~~~~~l~~i~~~l-------~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i 135 (183)
+++|+||||.+.+ .|..++..+++++ +.++|+++||||+++..+ +++.++.+|..+
T Consensus 159 ~~vViDEah~~~g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~ 221 (742)
T TIGR03817 159 RYVVIDECHSYRG-VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA 221 (742)
T ss_pred CEEEEeChhhccC-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE
Confidence 9999999999976 3777766665554 567899999999999854 678888888655
No 44
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.76 E-value=3.8e-19 Score=150.23 Aligned_cols=162 Identities=26% Similarity=0.302 Sum_probs=133.2
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhh--hhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCC--cCCCC
Q 030094 1 MGMIISPTRELSSQIYHVAQPFI--STLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV--LDFRN 76 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~--~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~--~~l~~ 76 (183)
+|+|+.||||||.|+|..+.++. ... +.++..+.......+....+....+||+|+||.++..++.. +. +++++
T Consensus 211 ~a~Il~ptreLa~Qi~re~~k~~~~~~t-~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~-~~~~idl~~ 288 (593)
T KOG0344|consen 211 RALILSPTRELAAQIYREMRKYSIDEGT-SLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGL-GKLNIDLSK 288 (593)
T ss_pred EEEEecchHHHHHHHHHHHHhcCCCCCC-chhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcC-CCccchhhe
Confidence 48999999999999999999997 444 56665555443333333344445689999999999999987 54 78999
Q ss_pred ceEEEEcccchhhcc-chHHHHHHHHHhCC-CCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcc
Q 030094 77 LEILVLDEADRLLDM-GFQKQISYIISRLP-KLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLA 154 (183)
Q Consensus 77 l~~lVvDEad~ll~~-~~~~~l~~i~~~l~-~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 154 (183)
+.++|+||||.+++. .|..++..|++.+. +...+-+||||++..+++++...+.++..|.++..
T Consensus 289 V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~-------------- 354 (593)
T KOG0344|consen 289 VEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLR-------------- 354 (593)
T ss_pred eeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecc--------------
Confidence 999999999999998 89999999988874 56678899999999999999999999999999888
Q ss_pred cCCCccCceEEEEEecCcc-hhhhhh
Q 030094 155 SSKTPLGLHLEVIWNVNQM-RNHHNL 179 (183)
Q Consensus 155 ~~~~~~~l~q~~i~~~~~~-k~~~ll 179 (183)
+....+|.|..++|.++. |+..+.
T Consensus 355 -~sa~~~V~QelvF~gse~~K~lA~r 379 (593)
T KOG0344|consen 355 -NSANETVDQELVFCGSEKGKLLALR 379 (593)
T ss_pred -hhHhhhhhhhheeeecchhHHHHHH
Confidence 666888999999987655 554443
No 45
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.75 E-value=6.7e-17 Score=151.20 Aligned_cols=134 Identities=19% Similarity=0.213 Sum_probs=104.5
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhh-----------hCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFIS-----------TLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM 69 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~-----------~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~ 69 (183)
.+|+|+|+|+|+.|+++.++.... ..+++++...+|+.+..++.+.+ +++|||||+||++|..++.++
T Consensus 39 raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll-~~ppdILVTTPEsL~~LLtsk 117 (1490)
T PRK09751 39 RILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLT-RNPPDILITTPESLYLMLTSR 117 (1490)
T ss_pred EEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHh-cCCCCEEEecHHHHHHHHhhh
Confidence 379999999999999998875221 12378999999998887776665 468999999999999998763
Q ss_pred CCcCCCCceEEEEcccchhhccc----hHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCC-CCeEEE
Q 030094 70 DVLDFRNLEILVLDEADRLLDMG----FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLR-NPVRVE 136 (183)
Q Consensus 70 ~~~~l~~l~~lVvDEad~ll~~~----~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~-~~~~i~ 136 (183)
....+++++++|+||+|.+++.. +...++.+...++++.|+|++|||+++. ++++++... +|+.|.
T Consensus 118 ~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~QrIgLSATI~n~-eevA~~L~g~~pv~Iv 188 (1490)
T PRK09751 118 ARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRIGLSATVRSA-SDVAAFLGGDRPVTVV 188 (1490)
T ss_pred hhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCCeEEEEEeeCCCH-HHHHHHhcCCCCEEEE
Confidence 33568999999999999999753 3455666666667889999999999984 677765433 466654
No 46
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.73 E-value=1.1e-16 Score=148.11 Aligned_cols=128 Identities=19% Similarity=0.265 Sum_probs=103.4
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHH---HhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l---~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
+++|||||++||.|+++.+++....+ ++++..+.|+.+.+++...+ ..+++||+||||+. +. +.+.++++
T Consensus 651 qvlvLvPT~eLA~Q~~~~f~~~~~~~-~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~l----L~--~~v~~~~L 723 (1147)
T PRK10689 651 QVAVLVPTTLLAQQHYDNFRDRFANW-PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKL----LQ--SDVKWKDL 723 (1147)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccC-CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHH----Hh--CCCCHhhC
Confidence 58999999999999999999876666 68888888888776665433 33579999999953 32 45678899
Q ss_pred eEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccC
Q 030094 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAE 140 (183)
Q Consensus 78 ~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~ 140 (183)
+++|+||+|++ ++.. ...++.++.++|+++||||+.++...++...+++|..|.....
T Consensus 724 ~lLVIDEahrf---G~~~--~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~ 781 (1147)
T PRK10689 724 GLLIVDEEHRF---GVRH--KERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA 781 (1147)
T ss_pred CEEEEechhhc---chhH--HHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCC
Confidence 99999999996 3322 3456778889999999999999989999889999998876544
No 47
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.71 E-value=3.4e-16 Score=142.25 Aligned_cols=128 Identities=21% Similarity=0.284 Sum_probs=101.1
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHH---HHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~---~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
+++|++||++||.|+++.++++.+.+ ++++..+.|+.+.+++. ..+..+++||+||||. ++ . +.+.++++
T Consensus 502 qvlvLvPT~~LA~Q~~~~f~~~~~~~-~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~----ll-~-~~v~f~~L 574 (926)
T TIGR00580 502 QVAVLVPTTLLAQQHFETFKERFANF-PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK----LL-Q-KDVKFKDL 574 (926)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccC-CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH----Hh-h-CCCCcccC
Confidence 58999999999999999999988777 78998888876654433 3444457999999993 33 3 46789999
Q ss_pred eEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccC
Q 030094 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAE 140 (183)
Q Consensus 78 ~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~ 140 (183)
+++|+||+|++ .......++.++.+.|+++||||..++...+....+.++..|.....
T Consensus 575 ~llVIDEahrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~ 632 (926)
T TIGR00580 575 GLLIIDEEQRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPE 632 (926)
T ss_pred CEEEeeccccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCC
Confidence 99999999994 22334556677788999999999988887777777888888775443
No 48
>PRK00254 ski2-like helicase; Provisional
Probab=99.68 E-value=4.1e-16 Score=139.61 Aligned_cols=118 Identities=15% Similarity=0.251 Sum_probs=100.7
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
+|+++|+++||.|+++.+..+. .. ++++..++|+.....+ .+ .++||+|+||+++..++++ +...+++++++|
T Consensus 71 ~l~l~P~~aLa~q~~~~~~~~~-~~-g~~v~~~~Gd~~~~~~--~~--~~~~IiV~Tpe~~~~ll~~-~~~~l~~l~lvV 143 (720)
T PRK00254 71 AVYLVPLKALAEEKYREFKDWE-KL-GLRVAMTTGDYDSTDE--WL--GKYDIIIATAEKFDSLLRH-GSSWIKDVKLVV 143 (720)
T ss_pred EEEEeChHHHHHHHHHHHHHHh-hc-CCEEEEEeCCCCCchh--hh--ccCCEEEEcHHHHHHHHhC-CchhhhcCCEEE
Confidence 7999999999999999998874 34 7899999998764332 22 4689999999999999876 556689999999
Q ss_pred EcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHh
Q 030094 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (183)
Q Consensus 82 vDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~ 127 (183)
+||+|.+.+.++...++.++.++++..|++++|||+++. ..++.+
T Consensus 144 iDE~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la~w 188 (720)
T PRK00254 144 ADEIHLIGSYDRGATLEMILTHMLGRAQILGLSATVGNA-EELAEW 188 (720)
T ss_pred EcCcCccCCccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHHH
Confidence 999999988888999999999999999999999999874 667664
No 49
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.67 E-value=1.8e-15 Score=134.63 Aligned_cols=114 Identities=21% Similarity=0.361 Sum_probs=88.7
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHH---HHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
+++|++||++||.|+++.++++.+.. ++++..++|+.+..+. ...+.++.++|+||||+.+. ..+.++++
T Consensus 312 q~lilaPT~~LA~Q~~~~l~~l~~~~-~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~------~~v~~~~l 384 (681)
T PRK10917 312 QAALMAPTEILAEQHYENLKKLLEPL-GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQ------DDVEFHNL 384 (681)
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhc-CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhc------ccchhccc
Confidence 58999999999999999999998876 7999999999875443 33454557999999997663 34567899
Q ss_pred eEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 78 ~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
+++|+||+|++- ......+...+..+|+++||||..+....+..
T Consensus 385 ~lvVIDE~Hrfg-----~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~ 428 (681)
T PRK10917 385 GLVIIDEQHRFG-----VEQRLALREKGENPHVLVMTATPIPRTLAMTA 428 (681)
T ss_pred ceEEEechhhhh-----HHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHH
Confidence 999999999962 22233344456679999999998877655554
No 50
>PRK02362 ski2-like helicase; Provisional
Probab=99.66 E-value=6.7e-16 Score=138.58 Aligned_cols=119 Identities=17% Similarity=0.262 Sum_probs=96.2
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.+|+++|||+||.|+++.++++.. + ++++..++|+.....+ .+ ..+||+|+||+++..++++ +...+++++++
T Consensus 69 kal~i~P~raLa~q~~~~~~~~~~-~-g~~v~~~tGd~~~~~~--~l--~~~~IiV~Tpek~~~llr~-~~~~l~~v~lv 141 (737)
T PRK02362 69 KALYIVPLRALASEKFEEFERFEE-L-GVRVGISTGDYDSRDE--WL--GDNDIIVATSEKVDSLLRN-GAPWLDDITCV 141 (737)
T ss_pred cEEEEeChHHHHHHHHHHHHHhhc-C-CCEEEEEeCCcCcccc--cc--CCCCEEEECHHHHHHHHhc-ChhhhhhcCEE
Confidence 379999999999999999998753 3 7899999987654332 22 4689999999999999986 55568899999
Q ss_pred EEcccchhhccchHHHHHHHHHhC---CCCCeEEEEeecCChHHHHHHHh
Q 030094 81 VLDEADRLLDMGFQKQISYIISRL---PKLRRTGLFSATQTEAVEELSKA 127 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l---~~~~Q~v~~SAT~~~~v~~~~~~ 127 (183)
|+||+|.+.+.+++..++.++.++ +++.|++++|||+++. ..++.+
T Consensus 142 ViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~w 190 (737)
T PRK02362 142 VVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELADW 190 (737)
T ss_pred EEECccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHHH
Confidence 999999998877888877776554 5678999999999864 555554
No 51
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.65 E-value=7.7e-16 Score=140.14 Aligned_cols=124 Identities=20% Similarity=0.257 Sum_probs=93.6
Q ss_pred CEEEEeCcHHHHHHHHHHHHH-------hh----hhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhc
Q 030094 1 MGMIISPTRELSSQIYHVAQP-------FI----STLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM 69 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~-------l~----~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~ 69 (183)
++|+++|||+||.|+++.+.. +. ...+++++....|+.+..++.+.+ ..+|||+|+||+++..++.+
T Consensus 86 ~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l-~~~p~IlVtTPE~L~~ll~~- 163 (876)
T PRK13767 86 YCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKML-KKPPHILITTPESLAILLNS- 163 (876)
T ss_pred EEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHH-hCCCCEEEecHHHHHHHhcC-
Confidence 389999999999999876553 22 233478899999998877766665 46899999999999988865
Q ss_pred CCc--CCCCceEEEEcccchhhccchHHHHHH----HHHhCCCCCeEEEEeecCChHHHHHHHh
Q 030094 70 DVL--DFRNLEILVLDEADRLLDMGFQKQISY----IISRLPKLRRTGLFSATQTEAVEELSKA 127 (183)
Q Consensus 70 ~~~--~l~~l~~lVvDEad~ll~~~~~~~l~~----i~~~l~~~~Q~v~~SAT~~~~v~~~~~~ 127 (183)
..+ .+++++++|+||+|.+.+.....++.. +....++..|++++|||+++. ..++++
T Consensus 164 ~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~ 226 (876)
T PRK13767 164 PKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKF 226 (876)
T ss_pred hhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHH
Confidence 443 478999999999999997655544444 344444678999999999873 444443
No 52
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.63 E-value=1.3e-14 Score=130.80 Aligned_cols=127 Identities=17% Similarity=0.119 Sum_probs=94.3
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.++|+.|||++|.|+++.+.+..+...+..+...+++... . ..+++|+|+|||+|.+++.+ ..++++++++
T Consensus 47 ~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~~------~-s~~t~I~v~T~G~Llr~l~~--d~~L~~v~~V 117 (819)
T TIGR01970 47 KIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGENK------V-SRRTRLEVVTEGILTRMIQD--DPELDGVGAL 117 (819)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccccc------c-CCCCcEEEECCcHHHHHHhh--CcccccCCEE
Confidence 4799999999999999988654332224556555554331 1 34689999999999999976 4579999999
Q ss_pred EEcccc-hhhccchHH-HHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEcc
Q 030094 81 VLDEAD-RLLDMGFQK-QISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRA 139 (183)
Q Consensus 81 VvDEad-~ll~~~~~~-~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~ 139 (183)
|+||+| ++++.++.- .+..+.+.++++.|+++||||++.+. ...|+.++..|.+..
T Consensus 118 IiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~---l~~~l~~~~vI~~~g 175 (819)
T TIGR01970 118 IFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGER---LSSLLPDAPVVESEG 175 (819)
T ss_pred EEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHH---HHHHcCCCcEEEecC
Confidence 999999 477766543 34556667788999999999999763 366787776665543
No 53
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.63 E-value=5.4e-15 Score=130.55 Aligned_cols=125 Identities=15% Similarity=0.131 Sum_probs=94.4
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhh--CCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 1 MGMIISPTRELSSQIYHVAQPFIST--LPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~--~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+++|++||||||.|+...+.+..++ +++..+...+||... .+.+.. ..+.+|+|+||+. ...++++++
T Consensus 224 ~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~-~k~~~Ilv~T~~L--------~l~~L~~v~ 293 (675)
T PHA02653 224 PIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPD-ELINTN-PKPYGLVFSTHKL--------TLNKLFDYG 293 (675)
T ss_pred EEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcch-HHhhcc-cCCCCEEEEeCcc--------cccccccCC
Confidence 3789999999999999998877654 346778888998772 221222 2468999999752 123578899
Q ss_pred EEEEcccchhhccchHHHHHHHHHhC-CCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEc
Q 030094 79 ILVLDEADRLLDMGFQKQISYIISRL-PKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVR 138 (183)
Q Consensus 79 ~lVvDEad~ll~~~~~~~l~~i~~~l-~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~ 138 (183)
++|+||||.+...+ +.+..+++.. ++.+|+++||||++++++.+ ..|+++|..|.+.
T Consensus 294 ~VVIDEaHEr~~~~--DllL~llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~ 351 (675)
T PHA02653 294 TVIIDEVHEHDQIG--DIIIAVARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIP 351 (675)
T ss_pred EEEccccccCccch--hHHHHHHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeC
Confidence 99999999987654 4555566544 34579999999999998887 5789999998875
No 54
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.63 E-value=1.1e-14 Score=131.17 Aligned_cols=126 Identities=13% Similarity=0.121 Sum_probs=94.1
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
+++|++|||++|.|+++.+.+..+...+..+...+++.+.. ..+.+|+|+|||+|.+++.. ...+++++++
T Consensus 50 ~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~~-------~~~t~I~v~T~G~Llr~l~~--d~~L~~v~~I 120 (812)
T PRK11664 50 KIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKV-------GPNTRLEVVTEGILTRMIQR--DPELSGVGLV 120 (812)
T ss_pred eEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcccc-------CCCCcEEEEChhHHHHHHhh--CCCcCcCcEE
Confidence 47999999999999999886543332366777777765431 23568999999999999876 4579999999
Q ss_pred EEcccch-hhccch-HHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEc
Q 030094 81 VLDEADR-LLDMGF-QKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVR 138 (183)
Q Consensus 81 VvDEad~-ll~~~~-~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~ 138 (183)
|+||+|. .++.++ ...+..+.+.++++.|+++||||++.+ . ...|+.++..|.+.
T Consensus 121 IlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~--~-l~~~~~~~~~I~~~ 177 (812)
T PRK11664 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDND--R-LQQLLPDAPVIVSE 177 (812)
T ss_pred EEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCHH--H-HHHhcCCCCEEEec
Confidence 9999997 454433 233455667788899999999999865 2 35678777666543
No 55
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.60 E-value=1.2e-14 Score=128.34 Aligned_cols=113 Identities=21% Similarity=0.327 Sum_probs=85.4
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHH---HHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKA---DVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
+++|++||++||.|+++.++++.+.. ++++..++|+...++ ....+..++++|+||||+.+. ..+.++++
T Consensus 286 qvlilaPT~~LA~Q~~~~~~~l~~~~-gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~------~~~~~~~l 358 (630)
T TIGR00643 286 QVALMAPTEILAEQHYNSLRNLLAPL-GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQ------EKVEFKRL 358 (630)
T ss_pred cEEEECCHHHHHHHHHHHHHHHhccc-CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHh------cccccccc
Confidence 58999999999999999999998876 899999999887654 334454567999999998653 24667899
Q ss_pred eEEEEcccchhhccchHHHHHHHHHhCC--CCCeEEEEeecCChHHHHH
Q 030094 78 EILVLDEADRLLDMGFQKQISYIISRLP--KLRRTGLFSATQTEAVEEL 124 (183)
Q Consensus 78 ~~lVvDEad~ll~~~~~~~l~~i~~~l~--~~~Q~v~~SAT~~~~v~~~ 124 (183)
+++|+||+|++- .. ....+.+... ..+|++++|||..++...+
T Consensus 359 ~lvVIDEaH~fg-~~---qr~~l~~~~~~~~~~~~l~~SATp~prtl~l 403 (630)
T TIGR00643 359 ALVIIDEQHRFG-VE---QRKKLREKGQGGFTPHVLVMSATPIPRTLAL 403 (630)
T ss_pred ceEEEechhhcc-HH---HHHHHHHhcccCCCCCEEEEeCCCCcHHHHH
Confidence 999999999952 11 2222333332 2689999999987765444
No 56
>PRK01172 ski2-like helicase; Provisional
Probab=99.59 E-value=1.4e-14 Score=128.98 Aligned_cols=119 Identities=20% Similarity=0.257 Sum_probs=94.7
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.+++++|+|+||.|+++.++++. .. +.++...+|+...... .+ ..+||+|+||+++..++.+ ....+++++++
T Consensus 67 k~v~i~P~raLa~q~~~~~~~l~-~~-g~~v~~~~G~~~~~~~--~~--~~~dIiv~Tpek~~~l~~~-~~~~l~~v~lv 139 (674)
T PRK01172 67 KSIYIVPLRSLAMEKYEELSRLR-SL-GMRVKISIGDYDDPPD--FI--KRYDVVILTSEKADSLIHH-DPYIINDVGLI 139 (674)
T ss_pred cEEEEechHHHHHHHHHHHHHHh-hc-CCeEEEEeCCCCCChh--hh--ccCCEEEECHHHHHHHHhC-ChhHHhhcCEE
Confidence 37899999999999999999874 33 7888888887654322 22 3689999999999999876 55668999999
Q ss_pred EEcccchhhccchHHHHHHHHHh---CCCCCeEEEEeecCChHHHHHHHh
Q 030094 81 VLDEADRLLDMGFQKQISYIISR---LPKLRRTGLFSATQTEAVEELSKA 127 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~---l~~~~Q~v~~SAT~~~~v~~~~~~ 127 (183)
|+||+|.+.+.++...++.++.. ++++.|++++|||+++. ..++++
T Consensus 140 ViDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~w 188 (674)
T PRK01172 140 VADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQW 188 (674)
T ss_pred EEecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHHH
Confidence 99999999877777666666544 45688999999999864 666664
No 57
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.57 E-value=3e-13 Score=101.05 Aligned_cols=136 Identities=37% Similarity=0.589 Sum_probs=110.5
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
+++++||+.++.|..+.+.++.... ........++.....+...+.....+++++||+.+...+.. ......+++++|
T Consensus 57 ~l~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~-~~~~~~~~~~iI 134 (201)
T smart00487 57 VLVLVPTRELAEQWAEELKKLGPSL-GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLEN-DLLELSNVDLVI 134 (201)
T ss_pred EEEEeCCHHHHHHHHHHHHHHhccC-CeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHc-CCcCHhHCCEEE
Confidence 6899999999999999998886543 33445555555545555555443349999999999999987 556788899999
Q ss_pred EcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEcc
Q 030094 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRA 139 (183)
Q Consensus 82 vDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~ 139 (183)
+||+|.+....+...+..+++.+++..+.+++|||.++.+......++.++..+....
T Consensus 135 iDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 135 LDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred EECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 9999999765688899999999988999999999999999999999999887776544
No 58
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.56 E-value=1e-13 Score=118.72 Aligned_cols=130 Identities=17% Similarity=0.224 Sum_probs=91.4
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCc-CCCC
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVL-DFRN 76 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~-~l~~ 76 (183)
.+||++||+||+.|..+.+..+ ++.+..+.|+....+... .+....++|+++||+++.........+ ...+
T Consensus 53 ~~lVi~P~~~L~~dq~~~l~~~-----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~ 127 (470)
T TIGR00614 53 ITLVISPLISLMEDQVLQLKAS-----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKG 127 (470)
T ss_pred cEEEEecHHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCC
Confidence 3799999999999988877654 567777777665543322 334456899999999976432110223 5688
Q ss_pred ceEEEEcccchhhccc--hHHHHHH---HHHhCCCCCeEEEEeecCChHHHHHHHhhC--CCCeEEE
Q 030094 77 LEILVLDEADRLLDMG--FQKQISY---IISRLPKLRRTGLFSATQTEAVEELSKAGL--RNPVRVE 136 (183)
Q Consensus 77 l~~lVvDEad~ll~~~--~~~~l~~---i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~--~~~~~i~ 136 (183)
++++|+||||.+.++| |.+.... +.+.+ ++.|++++|||.++.+..-+...+ .+|..+.
T Consensus 128 i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~ 193 (470)
T TIGR00614 128 ITLIAVDEAHCISQWGHDFRPDYKALGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFC 193 (470)
T ss_pred cCEEEEeCCcccCccccccHHHHHHHHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEe
Confidence 9999999999998765 5555544 34444 578899999999998876555543 4665543
No 59
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.49 E-value=1.2e-13 Score=123.70 Aligned_cols=83 Identities=16% Similarity=0.305 Sum_probs=74.0
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHH-HHHHHhcCCcCCC-----
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMDVLDFR----- 75 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l-~~~l~~~~~~~l~----- 75 (183)
++||+||||||.|+++.+..+.+++ ++++.+++||.+..++...+ +|||+||||++| .++++. +.+.++
T Consensus 138 v~IVTpTrELA~Qdae~m~~L~k~l-GLsV~~i~GG~~~~eq~~~y---~~DIVygTPgRLgfDyLrd-~~~~~~~~~~v 212 (970)
T PRK12899 138 VHLVTVNDYLAQRDCEWVGSVLRWL-GLTTGVLVSGSPLEKRKEIY---QCDVVYGTASEFGFDYLRD-NSIATRKEEQV 212 (970)
T ss_pred eEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHHc---CCCEEEECCChhHHHHhhC-CCCCcCHHHhh
Confidence 6899999999999999999999887 89999999999988876554 699999999999 999987 666666
Q ss_pred --CceEEEEcccchhh
Q 030094 76 --NLEILVLDEADRLL 89 (183)
Q Consensus 76 --~l~~lVvDEad~ll 89 (183)
.++++|+||||.||
T Consensus 213 qr~~~~~IIDEADsmL 228 (970)
T PRK12899 213 GRGFYFAIIDEVDSIL 228 (970)
T ss_pred cccccEEEEechhhhh
Confidence 45899999999997
No 60
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.48 E-value=1.9e-12 Score=118.39 Aligned_cols=125 Identities=21% Similarity=0.249 Sum_probs=89.0
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHh-----cCCcEEEeCcHHHHH---HHHhcCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEE-----EGANLLIGTPGRLYD---IMERMDVL 72 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~-----~~~~IiV~TP~~l~~---~l~~~~~~ 72 (183)
++|||+|+++|+.+....+.. . ++++..+.|+....++...+.. .+++|+++||++|.. ++.....+
T Consensus 502 iTLVISPLiSLmqDQV~~L~~----~-GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L 576 (1195)
T PLN03137 502 ITLVISPLVSLIQDQIMNLLQ----A-NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENL 576 (1195)
T ss_pred cEEEEeCHHHHHHHHHHHHHh----C-CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhh
Confidence 479999999999843333332 2 7888999999887777654432 578999999999863 22221112
Q ss_pred -CCCCceEEEEcccchhhccc--hHHHHHHH--HHhCCCCCeEEEEeecCChHHHHHHHhhCC
Q 030094 73 -DFRNLEILVLDEADRLLDMG--FQKQISYI--ISRLPKLRRTGLFSATQTEAVEELSKAGLR 130 (183)
Q Consensus 73 -~l~~l~~lVvDEad~ll~~~--~~~~l~~i--~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~ 130 (183)
....+.++||||||.++++| |.+....+ +....+..|++++|||.++.+...+...+.
T Consensus 577 ~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~ 639 (1195)
T PLN03137 577 NSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALG 639 (1195)
T ss_pred hhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcC
Confidence 23558899999999999886 77766653 333335788999999999998875555443
No 61
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.47 E-value=3.6e-13 Score=120.56 Aligned_cols=124 Identities=20% Similarity=0.278 Sum_probs=100.7
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
++++||+|.||.+.++.++++.. + ++++...+|+.....+ .+ .+++|+|+||+++..++++ ...-...++++|
T Consensus 79 ~vYivPlkALa~Ek~~~~~~~~~-~-GirV~~~TgD~~~~~~--~l--~~~~ViVtT~EK~Dsl~R~-~~~~~~~V~lvV 151 (766)
T COG1204 79 VVYIVPLKALAEEKYEEFSRLEE-L-GIRVGISTGDYDLDDE--RL--ARYDVIVTTPEKLDSLTRK-RPSWIEEVDLVV 151 (766)
T ss_pred EEEEeChHHHHHHHHHHhhhHHh-c-CCEEEEecCCcccchh--hh--ccCCEEEEchHHhhHhhhc-CcchhhcccEEE
Confidence 78999999999999999997744 4 8999999998875542 23 4799999999999999987 555778999999
Q ss_pred EcccchhhccchHHHHHHHHHhCC---CCCeEEEEeecCChHHHHHHHhhCCCCe
Q 030094 82 LDEADRLLDMGFQKQISYIISRLP---KLRRTGLFSATQTEAVEELSKAGLRNPV 133 (183)
Q Consensus 82 vDEad~ll~~~~~~~l~~i~~~l~---~~~Q~v~~SAT~~~~v~~~~~~~~~~~~ 133 (183)
+||+|.+-+..-+..++.|..++. ...|++..|||+++- .+++.+.-.++.
T Consensus 152 iDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~-~evA~wL~a~~~ 205 (766)
T COG1204 152 IDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATLPNA-EEVADWLNAKLV 205 (766)
T ss_pred EeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeeecCCH-HHHHHHhCCccc
Confidence 999999977655666666665554 347999999999987 888887655554
No 62
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.47 E-value=1.7e-12 Score=117.58 Aligned_cols=133 Identities=22% Similarity=0.258 Sum_probs=100.6
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCC-CceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHh-cCC--cCCCC
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLP-DVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-MDV--LDFRN 76 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~-~~~--~~l~~ 76 (183)
.||+|.||++||+...+.++++...++ ++++....|.....+.. .+..++|||+++||..|..++-. ... +.+++
T Consensus 117 ~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~-~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~ 195 (851)
T COG1205 117 RALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERR-AIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRN 195 (851)
T ss_pred cEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHH-HHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhc
Confidence 479999999999999999999999886 46666556655544443 44468999999999999995543 111 34788
Q ss_pred ceEEEEcccchhhccchHHHHHHHHHhC-------CCCCeEEEEeecCChHHHHHHHhhCCCCeEEE
Q 030094 77 LEILVLDEADRLLDMGFQKQISYIISRL-------PKLRRTGLFSATQTEAVEELSKAGLRNPVRVE 136 (183)
Q Consensus 77 l~~lVvDEad~ll~~~~~~~l~~i~~~l-------~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~ 136 (183)
++++|+||+|..-+ .|+.+|..+++++ +...|+++.|||+.+. .+++..++.......
T Consensus 196 Lk~lVvDElHtYrG-v~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~ 260 (851)
T COG1205 196 LKYLVVDELHTYRG-VQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVP 260 (851)
T ss_pred CcEEEEecceeccc-cchhHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceee
Confidence 99999999999754 3677776666665 4578999999999998 666666666555543
No 63
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.46 E-value=8e-13 Score=110.90 Aligned_cols=131 Identities=17% Similarity=0.185 Sum_probs=104.6
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
+|+|+||+-|+.|..+.|++.+ ..|.-.++.++|....++....+ ...+|+|+||+.+.+-+.. +.+|+.++.++|
T Consensus 61 vlfLAPTKPLV~Qh~~~~~~v~-~ip~~~i~~ltGev~p~~R~~~w--~~~kVfvaTPQvveNDl~~-Grid~~dv~~li 136 (542)
T COG1111 61 VLFLAPTKPLVLQHAEFCRKVT-GIPEDEIAALTGEVRPEEREELW--AKKKVFVATPQVVENDLKA-GRIDLDDVSLLI 136 (542)
T ss_pred EEEecCCchHHHHHHHHHHHHh-CCChhheeeecCCCChHHHHHHH--hhCCEEEeccHHHHhHHhc-CccChHHceEEE
Confidence 7999999999999999999997 45678889999988877666655 3579999999999999988 899999999999
Q ss_pred EcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHH---HHhhCCCCeEEE
Q 030094 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEEL---SKAGLRNPVRVE 136 (183)
Q Consensus 82 vDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~---~~~~~~~~~~i~ 136 (183)
+||||+-.++.-.-.+.+-.-...+++.++.+|||...+.+.+ ++...-.-+.+.
T Consensus 137 fDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevr 194 (542)
T COG1111 137 FDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVR 194 (542)
T ss_pred echhhhccCcchHHHHHHHHHHhccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEe
Confidence 9999999876555566655555567899999999997765544 444333444444
No 64
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.45 E-value=4.4e-13 Score=115.69 Aligned_cols=103 Identities=16% Similarity=0.177 Sum_probs=79.8
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.+||||||+||+.|+.+.++++... +...+..+.||.... .+++|+|+||+++.+... ..+++++++
T Consensus 160 ~vLilvpt~eL~~Q~~~~l~~~~~~-~~~~~~~i~~g~~~~--------~~~~I~VaT~qsl~~~~~----~~~~~~~~i 226 (501)
T PHA02558 160 KVLIIVPTTSLVTQMIDDFVDYRLF-PREAMHKIYSGTAKD--------TDAPIVVSTWQSAVKQPK----EWFDQFGMV 226 (501)
T ss_pred eEEEEECcHHHHHHHHHHHHHhccc-cccceeEEecCcccC--------CCCCEEEeeHHHHhhchh----hhccccCEE
Confidence 3799999999999999999998643 345555666665421 357999999999876432 246789999
Q ss_pred EEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChH
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~ 120 (183)
|+||||++.+. .+..++..+++.+|+++||||+.+.
T Consensus 227 IvDEaH~~~~~----~~~~il~~~~~~~~~lGLTATp~~~ 262 (501)
T PHA02558 227 IVDECHLFTGK----SLTSIITKLDNCKFKFGLTGSLRDG 262 (501)
T ss_pred EEEchhcccch----hHHHHHHhhhccceEEEEeccCCCc
Confidence 99999999754 4567777787789999999999754
No 65
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.42 E-value=5.9e-12 Score=111.01 Aligned_cols=128 Identities=18% Similarity=0.163 Sum_probs=89.8
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
.+||++|+++|+.|..+.+..+ ++.+..+.++...++... .+..+..+++++||+++...... ..+...++
T Consensus 67 ~tlVisPl~sL~~dqv~~l~~~-----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~-~~l~~~~l 140 (607)
T PRK11057 67 LTLVVSPLISLMKDQVDQLLAN-----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFL-EHLAHWNP 140 (607)
T ss_pred CEEEEecHHHHHHHHHHHHHHc-----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHH-HHHhhCCC
Confidence 3789999999999988877764 566777777666554433 33345689999999998742222 23445678
Q ss_pred eEEEEcccchhhccc--hHHHHH---HHHHhCCCCCeEEEEeecCChHHHHHHHhh--CCCCeEE
Q 030094 78 EILVLDEADRLLDMG--FQKQIS---YIISRLPKLRRTGLFSATQTEAVEELSKAG--LRNPVRV 135 (183)
Q Consensus 78 ~~lVvDEad~ll~~~--~~~~l~---~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~--~~~~~~i 135 (183)
+++|+||||.+.++| |.+.+. .+.+.+ +..|++++|||.++.+..-+... +.+|...
T Consensus 141 ~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~ 204 (607)
T PRK11057 141 ALLAVDEAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQ 204 (607)
T ss_pred CEEEEeCccccccccCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEE
Confidence 999999999998765 555443 344444 46899999999999876544333 4466543
No 66
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.41 E-value=8.9e-13 Score=112.20 Aligned_cols=152 Identities=20% Similarity=0.208 Sum_probs=115.6
Q ss_pred EEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceE
Q 030094 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEI 79 (183)
Q Consensus 3 lIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~ 79 (183)
|+|||--.||+|-|+.+++--+++ ++++..-+|-..++.... .-....+||||||-+.+.++++. + -++.++..
T Consensus 265 lfLvPLVALANQKy~dF~~rYs~L-glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRt-g-~~lgdiGt 341 (830)
T COG1202 265 LFLVPLVALANQKYEDFKERYSKL-GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRT-G-KDLGDIGT 341 (830)
T ss_pred EEEehhHHhhcchHHHHHHHhhcc-cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHc-C-Ccccccce
Confidence 789999999999999998876777 889988888776654432 11234689999999999999986 4 78999999
Q ss_pred EEEcccchhhccchHHHHHHHH---HhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccC
Q 030094 80 LVLDEADRLLDMGFQKQISYII---SRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASS 156 (183)
Q Consensus 80 lVvDEad~ll~~~~~~~l~~i~---~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 156 (183)
+|+||+|.+-+..-++.+..++ +.+-+..|.+.+|||..+. +++++.+-.+++.. .
T Consensus 342 VVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y--------------------~ 400 (830)
T COG1202 342 VVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLY--------------------D 400 (830)
T ss_pred EEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEee--------------------c
Confidence 9999999987644344444443 3344689999999999988 88898876666554 2
Q ss_pred CCccCceEEEEEec-Ccchhhhh
Q 030094 157 KTPLGLHLEVIWNV-NQMRNHHN 178 (183)
Q Consensus 157 ~~~~~l~q~~i~~~-~~~k~~~l 178 (183)
..|..++.+.++|. +.+|.+..
T Consensus 401 ~RPVplErHlvf~~~e~eK~~ii 423 (830)
T COG1202 401 ERPVPLERHLVFARNESEKWDII 423 (830)
T ss_pred CCCCChhHeeeeecCchHHHHHH
Confidence 34778888888887 44455443
No 67
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.41 E-value=7.5e-12 Score=110.09 Aligned_cols=123 Identities=20% Similarity=0.238 Sum_probs=91.1
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
.++|++|+++|+.|..+.++.+ ++.+..+.++.+..+... .+..+.++|+++||+++...... ..+...++
T Consensus 55 ~~lVisPl~sL~~dq~~~l~~~-----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~-~~l~~~~l 128 (591)
T TIGR01389 55 LTVVISPLISLMKDQVDQLRAA-----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFL-NMLQRIPI 128 (591)
T ss_pred cEEEEcCCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHH-HHHhcCCC
Confidence 3789999999999988877765 567777777766554433 33446789999999998754433 34567789
Q ss_pred eEEEEcccchhhccc--hHHHHHH---HHHhCCCCCeEEEEeecCChHHHHHHHhhCC
Q 030094 78 EILVLDEADRLLDMG--FQKQISY---IISRLPKLRRTGLFSATQTEAVEELSKAGLR 130 (183)
Q Consensus 78 ~~lVvDEad~ll~~~--~~~~l~~---i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~ 130 (183)
+++|+||||.+.++| |.+.... +...+|. .+++++|||.++.+..-+..++.
T Consensus 129 ~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~-~~vi~lTAT~~~~~~~~i~~~l~ 185 (591)
T TIGR01389 129 ALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQ-VPRIALTATADAETRQDIRELLR 185 (591)
T ss_pred CEEEEeCCcccccccCccHHHHHHHHHHHHhCCC-CCEEEEEeCCCHHHHHHHHHHcC
Confidence 999999999998765 5555444 4455554 45999999999998876666654
No 68
>PRK13766 Hef nuclease; Provisional
Probab=99.36 E-value=1.5e-11 Score=111.19 Aligned_cols=123 Identities=20% Similarity=0.249 Sum_probs=92.7
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
+|||+||++|+.|..+.++++... ++.++..+.|+.+..+....+ .+++|+|+||+.+...+.. +.+++.++.++|
T Consensus 61 vLvl~Pt~~L~~Q~~~~~~~~~~~-~~~~v~~~~g~~~~~~r~~~~--~~~~iiv~T~~~l~~~l~~-~~~~~~~~~liV 136 (773)
T PRK13766 61 VLILAPTKPLVEQHAEFFRKFLNI-PEEKIVVFTGEVSPEKRAELW--EKAKVIVATPQVIENDLIA-GRISLEDVSLLI 136 (773)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhCC-CCceEEEEeCCCCHHHHHHHH--hCCCEEEECHHHHHHHHHc-CCCChhhCcEEE
Confidence 799999999999999999987643 345777788877655443333 4689999999999888776 778899999999
Q ss_pred EcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChH---HHHHHHhh
Q 030094 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA---VEELSKAG 128 (183)
Q Consensus 82 vDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~---v~~~~~~~ 128 (183)
+||||++.+......+........+.++++++|||.... +..+++..
T Consensus 137 vDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP~~~~~~i~~~~~~L 186 (773)
T PRK13766 137 FDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLTASPGSDEEKIKEVCENL 186 (773)
T ss_pred EECCccccccccHHHHHHHHHhcCCCCEEEEEEcCCCCCHHHHHHHHHhC
Confidence 999999876544445555555555678899999997543 33444443
No 69
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.34 E-value=5.9e-12 Score=112.98 Aligned_cols=85 Identities=18% Similarity=0.280 Sum_probs=73.3
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHH-HHHHHhcCCcCC-----
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMDVLDF----- 74 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l-~~~l~~~~~~~l----- 74 (183)
.++|++||++||.|.++.+..+..++ ++++.+++||.+..++...+ +|||++|||++| .++++.+-.+++
T Consensus 125 ~V~VvTpn~yLA~qd~e~m~~l~~~l-GLtv~~i~gg~~~~~r~~~y---~~dIvygT~grlgfDyLrd~~~~~~~~~v~ 200 (896)
T PRK13104 125 GVHIVTVNDYLAKRDSQWMKPIYEFL-GLTVGVIYPDMSHKEKQEAY---KADIVYGTNNEYGFDYLRDNMAFSLTDKVQ 200 (896)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccc-CceEEEEeCCCCHHHHHHHh---CCCEEEECChhhhHHHHhcCCccchHhhhc
Confidence 37899999999999999999999888 89999999998876664443 699999999999 999987324555
Q ss_pred CCceEEEEcccchhh
Q 030094 75 RNLEILVLDEADRLL 89 (183)
Q Consensus 75 ~~l~~lVvDEad~ll 89 (183)
+.+.++|+||||.+|
T Consensus 201 r~l~~~IvDEaDsiL 215 (896)
T PRK13104 201 RELNFAIVDEVDSIL 215 (896)
T ss_pred cccceEEeccHhhhh
Confidence 689999999999997
No 70
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.34 E-value=9.2e-11 Score=97.33 Aligned_cols=134 Identities=13% Similarity=0.091 Sum_probs=89.6
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhC---CCceEEEEEcCcchH--HH-----------------HHHHHhcCCcEEEeCc
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTL---PDVKSVLLVGGVEVK--AD-----------------VKKIEEEGANLLIGTP 59 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~---~~~~~~~~~g~~~~~--~~-----------------~~~l~~~~~~IiV~TP 59 (183)
+++++|+++|+.|.++.++++...+ .+..+..+.|....+ .. .+......|+|+++||
T Consensus 42 ~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p 121 (357)
T TIGR03158 42 TIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNP 121 (357)
T ss_pred EEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecH
Confidence 6899999999999999999987543 245555555541111 00 1112234799999999
Q ss_pred HHHHHHHHhc---CCc----CCCCceEEEEcccchhhccc-----hHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHh
Q 030094 60 GRLYDIMERM---DVL----DFRNLEILVLDEADRLLDMG-----FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (183)
Q Consensus 60 ~~l~~~l~~~---~~~----~l~~l~~lVvDEad~ll~~~-----~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~ 127 (183)
+.+..+++.. ... .+.+++++|+||+|.+-..+ +......+++..+...+++++|||+++.+......
T Consensus 122 ~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~ 201 (357)
T TIGR03158 122 DIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQN 201 (357)
T ss_pred HHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHh
Confidence 9998776531 111 25789999999999975322 12234445555555689999999999998888776
Q ss_pred h--CCCCeEE
Q 030094 128 G--LRNPVRV 135 (183)
Q Consensus 128 ~--~~~~~~i 135 (183)
. +.+|..+
T Consensus 202 ~~~~~~~~~~ 211 (357)
T TIGR03158 202 AKQAGVKIAP 211 (357)
T ss_pred ccccCceeee
Confidence 5 5555433
No 71
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.33 E-value=5.4e-12 Score=104.36 Aligned_cols=125 Identities=15% Similarity=0.074 Sum_probs=82.9
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcch------------HHHHHHHHh-----cCCcEEEeCcHHHHH
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEV------------KADVKKIEE-----EGANLLIGTPGRLYD 64 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~------------~~~~~~l~~-----~~~~IiV~TP~~l~~ 64 (183)
+++++|+++|+.|+++.+..+.+. .+....|+... ......... ..++|+|+||+.+..
T Consensus 32 ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~ 107 (358)
T TIGR01587 32 VIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLK 107 (358)
T ss_pred EEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHH
Confidence 789999999999999999997532 23333333221 011001101 236899999999988
Q ss_pred HHHhc-CC--cCCC--CceEEEEcccchhhccchHHHHHHHHHhCC-CCCeEEEEeecCChHHHHHHHhhCCC
Q 030094 65 IMERM-DV--LDFR--NLEILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAVEELSKAGLRN 131 (183)
Q Consensus 65 ~l~~~-~~--~~l~--~l~~lVvDEad~ll~~~~~~~l~~i~~~l~-~~~Q~v~~SAT~~~~v~~~~~~~~~~ 131 (183)
.+... +. ..+. ..+++|+||+|.+.+.++.. +..+++.++ .+.|++++|||+++.+.+++..+...
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~~~~i~~SATlp~~l~~~~~~~~~~ 179 (358)
T TIGR01587 108 SVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDNDVPILLMSATLPKFLKEYAEKIGYV 179 (358)
T ss_pred HHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcCCCEEEEecCchHHHHHHHhcCCCc
Confidence 76541 11 1111 23789999999998764433 666666554 47899999999998888888766543
No 72
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.33 E-value=9e-12 Score=111.25 Aligned_cols=131 Identities=19% Similarity=0.216 Sum_probs=104.3
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCc--CCCCce
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVL--DFRNLE 78 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~--~l~~l~ 78 (183)
.||++.|-|+|++.+..-+......+ ++.+..-.|..+..+..+.. +++|||+|+||+.|.-++.. +.+ .+++++
T Consensus 75 ~~lYIsPLkALn~Di~~rL~~~~~~~-G~~v~vRhGDT~~~er~r~~-~~PPdILiTTPEsL~lll~~-~~~r~~l~~vr 151 (814)
T COG1201 75 YALYISPLKALNNDIRRRLEEPLREL-GIEVAVRHGDTPQSEKQKML-KNPPHILITTPESLAILLNS-PKFRELLRDVR 151 (814)
T ss_pred EEEEeCcHHHHHHHHHHHHHHHHHHc-CCccceecCCCChHHhhhcc-CCCCcEEEeChhHHHHHhcC-HHHHHHhcCCc
Confidence 38999999999999999999999887 89998888877766666565 67999999999999999876 444 489999
Q ss_pred EEEEcccchhhccchHHH----HHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCC--CeEEE
Q 030094 79 ILVLDEADRLLDMGFQKQ----ISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRN--PVRVE 136 (183)
Q Consensus 79 ~lVvDEad~ll~~~~~~~----l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~--~~~i~ 136 (183)
++|+||.|.+.+..-+.+ ++++.+..+ +.|.+..|||..+. ...+++.... +..|.
T Consensus 152 ~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv 213 (814)
T COG1201 152 YVIVDEIHALAESKRGVQLALSLERLRELAG-DFQRIGLSATVGPP-EEVAKFLVGFGDPCEIV 213 (814)
T ss_pred EEEeehhhhhhccccchhhhhhHHHHHhhCc-ccEEEeehhccCCH-HHHHHHhcCCCCceEEE
Confidence 999999999987643433 444444445 89999999999965 7777776665 44443
No 73
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.32 E-value=5.5e-12 Score=111.57 Aligned_cols=86 Identities=15% Similarity=0.178 Sum_probs=73.5
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHH-HHHHHhcC-----CcCC
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMD-----VLDF 74 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l-~~~l~~~~-----~~~l 74 (183)
++.|++||++||.|.++.+..+.+++ ++++.++.|+.+..++... ..+||++|||++| .++++.+- .+.+
T Consensus 99 ~V~VvTpt~~LA~qdae~~~~l~~~L-GLsv~~i~g~~~~~~r~~~---y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~ 174 (745)
T TIGR00963 99 GVHVVTVNDYLAQRDAEWMGQVYRFL-GLSVGLILSGMSPEERREA---YACDITYGTNNELGFDYLRDNMAHSKEEKVQ 174 (745)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccC-CCeEEEEeCCCCHHHHHHh---cCCCEEEECCCchhhHHHhcccccchhhhhc
Confidence 47899999999999999999999988 8999999999886554433 3689999999999 88887621 3568
Q ss_pred CCceEEEEcccchhhc
Q 030094 75 RNLEILVLDEADRLLD 90 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~ 90 (183)
+.+.++|+||+|.++-
T Consensus 175 r~l~~aIIDEaDs~LI 190 (745)
T TIGR00963 175 RPFHFAIIDEVDSILI 190 (745)
T ss_pred cccceeEeecHHHHhH
Confidence 9999999999999974
No 74
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.32 E-value=8.1e-11 Score=83.00 Aligned_cols=112 Identities=38% Similarity=0.609 Sum_probs=84.0
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
++|++|++.++.|..+.+...... +..+..+.++.......... ..+.+|+++|++.+...+.. .........++|
T Consensus 33 ~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~i~i~t~~~~~~~~~~-~~~~~~~~~~ii 108 (144)
T cd00046 33 VLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLL-SGKTDIVVGTPGRLLDELER-LKLSLKKLDLLI 108 (144)
T ss_pred EEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHh-cCCCCEEEECcHHHHHHHHc-CCcchhcCCEEE
Confidence 689999999999999988887643 56777777766655544333 46899999999999988876 444566788999
Q ss_pred EcccchhhccchHHHHHHHHHhCCCCCeEEEEeecC
Q 030094 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (183)
Q Consensus 82 vDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~ 117 (183)
+||+|.+....+...............+++++|||+
T Consensus 109 iDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 109 LDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred EeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 999999976544433223344456788999999995
No 75
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.26 E-value=5e-11 Score=110.87 Aligned_cols=115 Identities=20% Similarity=0.255 Sum_probs=78.9
Q ss_pred cHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEcccc-
Q 030094 8 TRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEAD- 86 (183)
Q Consensus 8 treLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEad- 86 (183)
++++|.||.+.+..-.+..-+.++ . .+.+. ..+++|+++|||+|++.+.. + ..+++++++|+||||
T Consensus 131 ArsLA~RVA~El~~~lG~~VGY~v----r---f~~~~----s~~t~I~v~TpG~LL~~l~~-d-~~Ls~~~~IIIDEAHE 197 (1294)
T PRK11131 131 ARTVANRIAEELETELGGCVGYKV----R---FNDQV----SDNTMVKLMTDGILLAEIQQ-D-RLLMQYDTIIIDEAHE 197 (1294)
T ss_pred HHHHHHHHHHHHhhhhcceeceee----c---Ccccc----CCCCCEEEEChHHHHHHHhc-C-CccccCcEEEecCccc
Confidence 679999999888753222112221 1 11111 35789999999999999976 4 448999999999999
Q ss_pred hhhccchHH-HHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEcc
Q 030094 87 RLLDMGFQK-QISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRA 139 (183)
Q Consensus 87 ~ll~~~~~~-~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~ 139 (183)
++++.+|.. .+..++... ++.|+++||||++. +.+.+.|.+.|+ |.+..
T Consensus 198 RsLn~DfLLg~Lk~lL~~r-pdlKvILmSATid~--e~fs~~F~~apv-I~V~G 247 (1294)
T PRK11131 198 RSLNIDFILGYLKELLPRR-PDLKVIITSATIDP--ERFSRHFNNAPI-IEVSG 247 (1294)
T ss_pred cccccchHHHHHHHhhhcC-CCceEEEeeCCCCH--HHHHHHcCCCCE-EEEcC
Confidence 588887764 344444332 46899999999975 467777666663 55543
No 76
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.26 E-value=2.1e-10 Score=96.56 Aligned_cols=160 Identities=19% Similarity=0.216 Sum_probs=110.2
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCc----eEEEEEc--------------CcchHHHHHHHHhc-------------
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDV----KSVLLVG--------------GVEVKADVKKIEEE------------- 50 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~----~~~~~~g--------------~~~~~~~~~~l~~~------------- 50 (183)
+|||+|+|.-|.++.+.+.++......+ +-..-+| +....++...+..+
T Consensus 40 VLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlGik~t 119 (442)
T PF06862_consen 40 VLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLGIKFT 119 (442)
T ss_pred EEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEeEEEe
Confidence 6999999999999999888886431000 0000001 11122222222222
Q ss_pred -----------CCcEEEeCcHHHHHHHHh----cCCcC-CCCceEEEEcccchhhccchHHHHHHHHHhCCC--------
Q 030094 51 -----------GANLLIGTPGRLYDIMER----MDVLD-FRNLEILVLDEADRLLDMGFQKQISYIISRLPK-------- 106 (183)
Q Consensus 51 -----------~~~IiV~TP~~l~~~l~~----~~~~~-l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~-------- 106 (183)
+.|||||+|-.|...+.. ....| +++++++|+|.||.|+-+ .++++..+++.++.
T Consensus 120 rk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQ-NW~Hv~~v~~~lN~~P~~~~~~ 198 (442)
T PF06862_consen 120 RKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQ-NWEHVLHVFEHLNLQPKKSHDT 198 (442)
T ss_pred cCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHh-hHHHHHHHHHHhccCCCCCCCC
Confidence 489999999999999984 12344 899999999999999855 58888888888742
Q ss_pred ----------------CCeEEEEeecCChHHHHHHHhhCCCCe-EEEEccCCcccccccchhhcccCCCccCceEEEEEe
Q 030094 107 ----------------LRRTGLFSATQTEAVEELSKAGLRNPV-RVEVRAESKSHHVSASSQQLASSKTPLGLHLEVIWN 169 (183)
Q Consensus 107 ----------------~~Q~v~~SAT~~~~v~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~i~~ 169 (183)
-||++++|+..++++..+.+.++.|.. .+.+...... .+........++|.|...
T Consensus 199 DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~--------~g~i~~v~~~v~Q~F~r~ 270 (442)
T PF06862_consen 199 DFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEA--------SGVISQVVVQVRQVFQRF 270 (442)
T ss_pred CHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeecccc--------ceeeeccccCCceEEEEe
Confidence 159999999999999999999888775 4444433210 122356777899999875
Q ss_pred c
Q 030094 170 V 170 (183)
Q Consensus 170 ~ 170 (183)
+
T Consensus 271 ~ 271 (442)
T PF06862_consen 271 D 271 (442)
T ss_pred c
Confidence 5
No 77
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.23 E-value=1.7e-10 Score=102.81 Aligned_cols=112 Identities=17% Similarity=0.261 Sum_probs=80.5
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHH---HHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~---l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
++||++||++|+.|+++.+++.. +.++..+.|+.+..++... +..+.++|+||||+.+. ..++++
T Consensus 192 ~vLvLvPt~~L~~Q~~~~l~~~f----g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~--------~p~~~l 259 (679)
T PRK05580 192 QALVLVPEIALTPQMLARFRARF----GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF--------LPFKNL 259 (679)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHh----CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc--------ccccCC
Confidence 48999999999999999887643 5678889988776555432 33457899999997653 346789
Q ss_pred eEEEEcccchhhccc-----h-HHHHHHHHHhCCCCCeEEEEeecCChHHHHHH
Q 030094 78 EILVLDEADRLLDMG-----F-QKQISYIISRLPKLRRTGLFSATQTEAVEELS 125 (183)
Q Consensus 78 ~~lVvDEad~ll~~~-----~-~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~ 125 (183)
+++|+||+|...-.+ | ..++. +.+....+.|++++|||.+.+....+
T Consensus 260 ~liVvDEeh~~s~~~~~~p~y~~r~va-~~ra~~~~~~~il~SATps~~s~~~~ 312 (679)
T PRK05580 260 GLIIVDEEHDSSYKQQEGPRYHARDLA-VVRAKLENIPVVLGSATPSLESLANA 312 (679)
T ss_pred CEEEEECCCccccccCcCCCCcHHHHH-HHHhhccCCCEEEEcCCCCHHHHHHH
Confidence 999999999753211 1 12332 23344578999999999887655543
No 78
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.20 E-value=1.9e-10 Score=101.09 Aligned_cols=85 Identities=21% Similarity=0.275 Sum_probs=66.8
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHH-HHHHHhcC---------
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMD--------- 70 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l-~~~l~~~~--------- 70 (183)
+++|++||++||.|.++.+..+..++ ++++.+++||.+.. .+.. ..++||++||...+ .++++.+=
T Consensus 146 ~v~VvTptreLA~qdae~~~~l~~~l-Glsv~~i~gg~~~~--~r~~-~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~ 221 (656)
T PRK12898 146 PVHVITVNDYLAERDAELMRPLYEAL-GLTVGCVVEDQSPD--ERRA-AYGADITYCTNKELVFDYLRDRLALGQRASDA 221 (656)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhc-CCEEEEEeCCCCHH--HHHH-HcCCCEEEECCCchhhhhccccccccccccch
Confidence 48999999999999999999999888 99999999997643 3333 35899999999988 44554310
Q ss_pred ---------------CcCCCCceEEEEcccchhh
Q 030094 71 ---------------VLDFRNLEILVLDEADRLL 89 (183)
Q Consensus 71 ---------------~~~l~~l~~lVvDEad~ll 89 (183)
..-.+.+.+.|+||+|.++
T Consensus 222 ~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiL 255 (656)
T PRK12898 222 RLALESLHGRSSRSTQLLLRGLHFAIVDEADSVL 255 (656)
T ss_pred hhhhhhhccccCchhhhcccccceeEeeccccee
Confidence 0113567899999999986
No 79
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.19 E-value=8.2e-11 Score=105.34 Aligned_cols=86 Identities=19% Similarity=0.196 Sum_probs=70.4
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHH-HHHHHhc-----CCcCC
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERM-----DVLDF 74 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l-~~~l~~~-----~~~~l 74 (183)
+++|++||++||.|.++.+..+..++ ++++.++.|+.+..++.+.. .+|||++|||+++ .+++..+ ....+
T Consensus 121 ~v~VvTpt~~LA~qd~e~~~~l~~~l-Gl~v~~i~g~~~~~~~r~~~--y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~ 197 (790)
T PRK09200 121 GVHLITVNDYLAKRDAEEMGQVYEFL-GLTVGLNFSDIDDASEKKAI--YEADIIYTTNSELGFDYLRDNLADSKEDKVQ 197 (790)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCcHHHHHHh--cCCCEEEECCccccchhHHhccccchhhhcc
Confidence 47899999999999999999999988 99999999998844444433 4799999999999 4555431 12346
Q ss_pred CCceEEEEcccchhh
Q 030094 75 RNLEILVLDEADRLL 89 (183)
Q Consensus 75 ~~l~~lVvDEad~ll 89 (183)
+.+.++|+||||.++
T Consensus 198 r~~~~~IvDEaDsiL 212 (790)
T PRK09200 198 RPLNYAIIDEIDSIL 212 (790)
T ss_pred cccceEEEeccccce
Confidence 889999999999987
No 80
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.14 E-value=2.2e-10 Score=102.05 Aligned_cols=86 Identities=19% Similarity=0.225 Sum_probs=67.6
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcc---hHHHHHHHHhcCCcEEEeCcHHH-HHHHHh-----cCCc
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVE---VKADVKKIEEEGANLLIGTPGRL-YDIMER-----MDVL 72 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~---~~~~~~~l~~~~~~IiV~TP~~l-~~~l~~-----~~~~ 72 (183)
++|++||++||.|.++.+..+.+++ ++++..++++.. ...+.+.. ..+|||++|||+++ .+++.. ....
T Consensus 114 V~VVTpn~yLA~Rdae~m~~l~~~L-GLsv~~~~~~s~~~~~~~~~rr~-~y~~dIvygTp~~LgfDyLrD~l~~~~~~~ 191 (762)
T TIGR03714 114 AMLVTTNDYLAKRDAEEMGPVYEWL-GLTVSLGVVDDPDEEYDANEKRK-IYNSDIVYTTNSALGFDYLIDNLASNKEGK 191 (762)
T ss_pred eEEeCCCHHHHHHHHHHHHHHHhhc-CCcEEEEECCCCccccCHHHHHH-hCCCCEEEECchhhhhhHHHHHhhcchhhc
Confidence 7899999999999999999999888 899988877632 33333333 25899999999999 555532 1234
Q ss_pred CCCCceEEEEcccchhh
Q 030094 73 DFRNLEILVLDEADRLL 89 (183)
Q Consensus 73 ~l~~l~~lVvDEad~ll 89 (183)
.++.+.++|+||||.||
T Consensus 192 ~~r~l~~~IVDEaDsIL 208 (762)
T TIGR03714 192 FLRPFNYVIVDEVDSVL 208 (762)
T ss_pred ccccCcEEEEecHhhHh
Confidence 57889999999999996
No 81
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.11 E-value=1.3e-09 Score=94.89 Aligned_cols=114 Identities=19% Similarity=0.386 Sum_probs=91.6
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcch---HHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEV---KADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~---~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
||..++||.-||.|.++.+.++...+ ++++..++|.... ++....+.++..||+|||. .++. ....++++
T Consensus 313 Q~ALMAPTEILA~QH~~~~~~~l~~~-~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTH----ALiQ--d~V~F~~L 385 (677)
T COG1200 313 QAALMAPTEILAEQHYESLRKWLEPL-GIRVALLTGSLKGKARKEILEQLASGEIDIVVGTH----ALIQ--DKVEFHNL 385 (677)
T ss_pred eeEEeccHHHHHHHHHHHHHHHhhhc-CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcc----hhhh--cceeecce
Confidence 68899999999999999999999887 8999999997654 4445566667799999997 4554 57889999
Q ss_pred eEEEEcccchhhccchHHHHHHHHHhCCC-CCeEEEEeecCChHHHHHHH
Q 030094 78 EILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 78 ~~lVvDEad~ll~~~~~~~l~~i~~~l~~-~~Q~v~~SAT~~~~v~~~~~ 126 (183)
.++|+||-|++ +-+=+..++..+. .+..++||||.-|....+.-
T Consensus 386 gLVIiDEQHRF-----GV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~ 430 (677)
T COG1200 386 GLVIIDEQHRF-----GVHQRLALREKGEQNPHVLVMTATPIPRTLALTA 430 (677)
T ss_pred eEEEEeccccc-----cHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHH
Confidence 99999999994 4444555666666 68999999998777555544
No 82
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.08 E-value=8.7e-10 Score=99.26 Aligned_cols=148 Identities=18% Similarity=0.231 Sum_probs=107.0
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCC---cCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV---LDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~---~~l~~l~ 78 (183)
.++++|+++||..+++-+.+-.... +++|..++|........ + ..++|||+||++..-.-++ .. -.++.++
T Consensus 167 iVYIaPmKALa~Em~~~~~kkl~~~-gi~v~ELTGD~ql~~te--i--~~tqiiVTTPEKwDvvTRk-~~~d~~l~~~V~ 240 (1230)
T KOG0952|consen 167 IVYIAPMKALAAEMVDKFSKKLAPL-GISVRELTGDTQLTKTE--I--ADTQIIVTTPEKWDVVTRK-SVGDSALFSLVR 240 (1230)
T ss_pred EEEEechHHHHHHHHHHHhhhcccc-cceEEEecCcchhhHHH--H--HhcCEEEecccceeeeeee-eccchhhhhhee
Confidence 4789999999998877665544444 89999999988765443 3 2589999999985433222 21 2368899
Q ss_pred EEEEcccchhhccchHHHHHHHHHhCC-------CCCeEEEEeecCChHHHHHHHhhCCCC-eEEEEccCCcccccccch
Q 030094 79 ILVLDEADRLLDMGFQKQISYIISRLP-------KLRRTGLFSATQTEAVEELSKAGLRNP-VRVEVRAESKSHHVSASS 150 (183)
Q Consensus 79 ~lVvDEad~ll~~~~~~~l~~i~~~l~-------~~~Q~v~~SAT~~~~v~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~ 150 (183)
++|+||+|.|-+ .-+.-++.|+.+.. ..-+++.+|||+|+= +.++.+.--|| .-+..-+.
T Consensus 241 LviIDEVHlLhd-~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~-eDvA~fL~vn~~~glfsFd~---------- 308 (1230)
T KOG0952|consen 241 LVIIDEVHLLHD-DRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNY-EDVARFLRVNPYAGLFSFDQ---------- 308 (1230)
T ss_pred eEEeeeehhhcC-cccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCH-HHHHHHhcCCCccceeeecc----------
Confidence 999999998754 45777777776653 345799999999976 67776654453 44554455
Q ss_pred hhcccCCCccCceEEEEEecCc
Q 030094 151 QQLASSKTPLGLHLEVIWNVNQ 172 (183)
Q Consensus 151 ~~~~~~~~~~~l~q~~i~~~~~ 172 (183)
...|..+.|.++.+...
T Consensus 309 -----~yRPvpL~~~~iG~k~~ 325 (1230)
T KOG0952|consen 309 -----RYRPVPLTQGFIGIKGK 325 (1230)
T ss_pred -----cccccceeeeEEeeecc
Confidence 67788899999888766
No 83
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.06 E-value=7e-10 Score=99.49 Aligned_cols=84 Identities=18% Similarity=0.274 Sum_probs=72.4
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHH-HHHHHhcCC-----cCCC
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMDV-----LDFR 75 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l-~~~l~~~~~-----~~l~ 75 (183)
+-|++||++||.|.++.+..+..++ ++++.++.|+.+..++...+ .+||++|||+++ .++++.+-. ...+
T Consensus 125 V~IvTpn~yLA~rd~e~~~~l~~~L-Glsv~~i~~~~~~~er~~~y---~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r 200 (830)
T PRK12904 125 VHVVTVNDYLAKRDAEWMGPLYEFL-GLSVGVILSGMSPEERREAY---AADITYGTNNEFGFDYLRDNMVFSLEERVQR 200 (830)
T ss_pred EEEEecCHHHHHHHHHHHHHHHhhc-CCeEEEEcCCCCHHHHHHhc---CCCeEEECCcchhhhhhhcccccchhhhccc
Confidence 5689999999999999999999888 99999999998877766554 599999999999 889876222 2368
Q ss_pred CceEEEEcccchhh
Q 030094 76 NLEILVLDEADRLL 89 (183)
Q Consensus 76 ~l~~lVvDEad~ll 89 (183)
.+.++|+||||.+|
T Consensus 201 ~~~~aIvDEaDsiL 214 (830)
T PRK12904 201 GLNYAIVDEVDSIL 214 (830)
T ss_pred ccceEEEechhhhe
Confidence 89999999999987
No 84
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.03 E-value=5.7e-09 Score=90.28 Aligned_cols=112 Identities=19% Similarity=0.234 Sum_probs=77.9
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
++||++|+++|+.|+++.+++.. +.++..+.|+.+..+..+ .+..+.++|+|||+..+. ..++++
T Consensus 27 ~vLvlvP~i~L~~Q~~~~l~~~f----~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf--------~p~~~l 94 (505)
T TIGR00595 27 SVLVLVPEIALTPQMIQRFKYRF----GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF--------LPFKNL 94 (505)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHh----CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc--------CcccCC
Confidence 48999999999999999887643 456777888776554433 333456899999997653 236788
Q ss_pred eEEEEcccchhhcc---c---hHHHHHHHHHhCCCCCeEEEEeecCChHHHHHH
Q 030094 78 EILVLDEADRLLDM---G---FQKQISYIISRLPKLRRTGLFSATQTEAVEELS 125 (183)
Q Consensus 78 ~~lVvDEad~ll~~---~---~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~ 125 (183)
+++|+||+|...-. + ...++..... ...+.+++++|||.+.+....+
T Consensus 95 ~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra-~~~~~~vil~SATPsles~~~~ 147 (505)
T TIGR00595 95 GLIIVDEEHDSSYKQEEGPRYHARDVAVYRA-KKFNCPVVLGSATPSLESYHNA 147 (505)
T ss_pred CEEEEECCCccccccccCCCCcHHHHHHHHH-HhcCCCEEEEeCCCCHHHHHHH
Confidence 99999999986421 1 1223333333 3368899999999876655443
No 85
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.97 E-value=6.8e-09 Score=94.69 Aligned_cols=140 Identities=26% Similarity=0.263 Sum_probs=107.6
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
+++..|.++|..|.|..+....... .-.+.+++|..++ +.++.++|-|-+-|.+++.+ +...+..+.++|
T Consensus 165 viYTsPIKALsNQKyrdl~~~fgdv-~~~vGL~TGDv~I--------N~~A~clvMTTEILRnMlyr-g~~~~~~i~~Vi 234 (1041)
T COG4581 165 VIYTSPIKALSNQKYRDLLAKFGDV-ADMVGLMTGDVSI--------NPDAPCLVMTTEILRNMLYR-GSESLRDIEWVV 234 (1041)
T ss_pred eEeccchhhhhhhHHHHHHHHhhhh-hhhccceecceee--------CCCCceEEeeHHHHHHHhcc-CcccccccceEE
Confidence 5788999999999999888764422 2235667776654 45678999999999999988 778899999999
Q ss_pred EcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCC---CCeEEEEccCCcccccccchhhcccCCC
Q 030094 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLR---NPVRVEVRAESKSHHVSASSQQLASSKT 158 (183)
Q Consensus 82 vDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (183)
+||+|.+-+..-+.-.+.++-.+|+.-|.+++|||+++. .+|..|+-. .|..+...+. .
T Consensus 235 FDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv~N~-~EF~~Wi~~~~~~~~~vv~t~~-----------------R 296 (1041)
T COG4581 235 FDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATVPNA-EEFAEWIQRVHSQPIHVVSTEH-----------------R 296 (1041)
T ss_pred EEeeeeccccccchhHHHHHHhcCCCCcEEEEeCCCCCH-HHHHHHHHhccCCCeEEEeecC-----------------C
Confidence 999999987666666677888899999999999999998 777777642 4544443332 4
Q ss_pred ccCceEEEEEe
Q 030094 159 PLGLHLEVIWN 169 (183)
Q Consensus 159 ~~~l~q~~i~~ 169 (183)
|..+.||++.-
T Consensus 297 pvPL~~~~~~~ 307 (1041)
T COG4581 297 PVPLEHFVYVG 307 (1041)
T ss_pred CCCeEEEEecC
Confidence 66777776543
No 86
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=98.91 E-value=7.6e-09 Score=91.32 Aligned_cols=124 Identities=14% Similarity=0.151 Sum_probs=89.6
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcC-CCCceEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLD-FRNLEIL 80 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~-l~~l~~l 80 (183)
+++++||+-|+.|....+..++. +-++....||.........+ -..++|+|.||+.|..-+.. +..+ ++.+.++
T Consensus 109 iVF~aP~~pLv~QQ~a~~~~~~~---~~~~T~~l~~~~~~~~r~~i-~~s~~vff~TpQil~ndL~~-~~~~~ls~fs~i 183 (746)
T KOG0354|consen 109 VVFLAPTRPLVNQQIACFSIYLI---PYSVTGQLGDTVPRSNRGEI-VASKRVFFRTPQILENDLKS-GLHDELSDFSLI 183 (746)
T ss_pred EEEeeCCchHHHHHHHHHhhccC---cccceeeccCccCCCchhhh-hcccceEEeChHhhhhhccc-ccccccceEEEE
Confidence 68999999999999865555542 24556666664332222233 24789999999999999987 5544 5999999
Q ss_pred EEcccchhhccchHH-HHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCC
Q 030094 81 VLDEADRLLDMGFQK-QISYIISRLPKLRRTGLFSATQTEAVEELSKAGLR 130 (183)
Q Consensus 81 VvDEad~ll~~~~~~-~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~ 130 (183)
|+||||+-.+..-+. -+...+..-....|++++|||+........+...+
T Consensus 184 v~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qILgLTASpG~~~~~v~~~I~~ 234 (746)
T KOG0354|consen 184 VFDECHRTSKNHPYNNIMREYLDLKNQGNQILGLTASPGSKLEQVQNVIDN 234 (746)
T ss_pred EEcccccccccccHHHHHHHHHHhhhccccEEEEecCCCccHHHHHHHHHh
Confidence 999999998765444 44466665556669999999999876666655433
No 87
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.90 E-value=4e-09 Score=94.92 Aligned_cols=85 Identities=19% Similarity=0.262 Sum_probs=71.1
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHH-HHHHHhcCCcCC-----C
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMDVLDF-----R 75 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l-~~~l~~~~~~~l-----~ 75 (183)
+.|++||++||.|..+.+..+..++ ++++.++.++.+..+.. ...+|||++|||+++ .++++.+=.++. +
T Consensus 126 VhIvT~ndyLA~RD~e~m~~l~~~l-Glsv~~i~~~~~~~~r~---~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr 201 (908)
T PRK13107 126 VHVITVNDYLARRDAENNRPLFEFL-GLTVGINVAGLGQQEKK---AAYNADITYGTNNEFGFDYLRDNMAFSPQERVQR 201 (908)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHhc-CCeEEEecCCCCHHHHH---hcCCCCeEEeCCCcccchhhhccCccchhhhhcc
Confidence 6899999999999999999999998 99999999987764332 234799999999999 888876214444 7
Q ss_pred CceEEEEcccchhhc
Q 030094 76 NLEILVLDEADRLLD 90 (183)
Q Consensus 76 ~l~~lVvDEad~ll~ 90 (183)
.+.+.|+||||.+|-
T Consensus 202 ~~~~aIvDEvDsiLi 216 (908)
T PRK13107 202 PLHYALIDEVDSILI 216 (908)
T ss_pred ccceeeecchhhhcc
Confidence 889999999999973
No 88
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=98.89 E-value=1.4e-08 Score=93.04 Aligned_cols=128 Identities=20% Similarity=0.312 Sum_probs=103.1
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
|+.+||||--||+|.|+.++.=.+++ ++++..+..=.+.+++.. .+..+..||||||. .++. +.+.++++
T Consensus 645 QVAvLVPTTlLA~QHy~tFkeRF~~f-PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH----rLL~--kdv~FkdL 717 (1139)
T COG1197 645 QVAVLVPTTLLAQQHYETFKERFAGF-PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH----RLLS--KDVKFKDL 717 (1139)
T ss_pred eEEEEcccHHhHHHHHHHHHHHhcCC-CeeEEEecccCCHHHHHHHHHHHhcCCccEEEech----HhhC--CCcEEecC
Confidence 68899999999999999999888888 699988876666555544 55668899999997 5554 57889999
Q ss_pred eEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccC
Q 030094 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAE 140 (183)
Q Consensus 78 ~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~ 140 (183)
.++|+||=|++ +....+. ++.+..+.-++-+|||.-|+..+++-.-+++-..|....+
T Consensus 718 GLlIIDEEqRF-GVk~KEk----LK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~ 775 (1139)
T COG1197 718 GLLIIDEEQRF-GVKHKEK----LKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPE 775 (1139)
T ss_pred CeEEEechhhc-CccHHHH----HHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCC
Confidence 99999999994 3334444 4455567889999999999999999988888888876655
No 89
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=2.8e-09 Score=90.29 Aligned_cols=131 Identities=23% Similarity=0.254 Sum_probs=94.3
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEE--------EEEcC--------cchHHHHHHHHh----------------
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSV--------LLVGG--------VEVKADVKKIEE---------------- 49 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~--------~~~g~--------~~~~~~~~~l~~---------------- 49 (183)
+|||||+||-|..+.+.+..+..+..+-+.. .-++| ....++.+.+..
T Consensus 296 VLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftkK 375 (698)
T KOG2340|consen 296 VLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTKK 375 (698)
T ss_pred EEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHHH
Confidence 7999999999999999998884332121111 11111 011122221111
Q ss_pred --------cCCcEEEeCcHHHHHHHHhcC----CcC-CCCceEEEEcccchhhccchHHHHHHHHHhCCC---C------
Q 030094 50 --------EGANLLIGTPGRLYDIMERMD----VLD-FRNLEILVLDEADRLLDMGFQKQISYIISRLPK---L------ 107 (183)
Q Consensus 50 --------~~~~IiV~TP~~l~~~l~~~~----~~~-l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~---~------ 107 (183)
...||+||+|..|..++.+++ .+| ++++.++|+|.||.++.+ .++++..|+.++.. +
T Consensus 376 tikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~Q-NwEhl~~ifdHLn~~P~k~h~~Df 454 (698)
T KOG2340|consen 376 TIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQ-NWEHLLHIFDHLNLQPSKQHDVDF 454 (698)
T ss_pred HHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHh-hHHHHHHHHHHhhcCcccccCCCh
Confidence 358999999999999998422 244 799999999999999876 48888899988742 1
Q ss_pred ---------------CeEEEEeecCChHHHHHHHhhCCCCe
Q 030094 108 ---------------RRTGLFSATQTEAVEELSKAGLRNPV 133 (183)
Q Consensus 108 ---------------~Q~v~~SAT~~~~v~~~~~~~~~~~~ 133 (183)
+|+++||+--.+....+...++.|..
T Consensus 455 SRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~ 495 (698)
T KOG2340|consen 455 SRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMA 495 (698)
T ss_pred hheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhc
Confidence 49999999999999999999988764
No 90
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.76 E-value=3e-08 Score=90.95 Aligned_cols=154 Identities=18% Similarity=0.160 Sum_probs=106.6
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcC-CCCceEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLD-FRNLEIL 80 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~-l~~l~~l 80 (183)
.+.++|.+.|++.+...+.+-...+ +++|.-.+|......+. -.+.+|+||||+.-...-++.+..+ .+-++.+
T Consensus 367 IVYIAPmKaLvqE~VgsfSkRla~~-GI~V~ElTgD~~l~~~q----ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLl 441 (1674)
T KOG0951|consen 367 IVYIAPMKALVQEMVGSFSKRLAPL-GITVLELTGDSQLGKEQ----IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLL 441 (1674)
T ss_pred EEEEeeHHHHHHHHHHHHHhhcccc-CcEEEEecccccchhhh----hhcceeEEeccchhhhhhcccCchhHHHHHHHH
Confidence 4679999999997777555544566 89999999987644332 2467899999998544433312222 3567889
Q ss_pred EEcccchhhccchHHHHHHHHHhCC-------CCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhc
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLP-------KLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQL 153 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~-------~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 153 (183)
|+||.|.+-+ .-++.+++|..+.. ..++.+.+|||+|+- ...+.-...+|.-+..-+.
T Consensus 442 IIDEIHLLhD-dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy-~DV~~Fl~v~~~glf~fd~------------- 506 (1674)
T KOG0951|consen 442 IIDEIHLLHD-DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNY-EDVASFLRVDPEGLFYFDS------------- 506 (1674)
T ss_pred hhhhhhhccc-ccchHHHHHHHHHHHHhhhcccCceeeeecccCCch-hhhHHHhccCcccccccCc-------------
Confidence 9999998744 35666666655542 367899999999976 4444433345554554455
Q ss_pred ccCCCccCceEEEEEecCcchhhh
Q 030094 154 ASSKTPLGLHLEVIWNVNQMRNHH 177 (183)
Q Consensus 154 ~~~~~~~~l~q~~i~~~~~~k~~~ 177 (183)
.+.|..++|.||.+...+..++
T Consensus 507 --syRpvPL~qq~Igi~ek~~~~~ 528 (1674)
T KOG0951|consen 507 --SYRPVPLKQQYIGITEKKPLKR 528 (1674)
T ss_pred --ccCcCCccceEeccccCCchHH
Confidence 6789999999999887665554
No 91
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.75 E-value=2.9e-07 Score=86.38 Aligned_cols=120 Identities=20% Similarity=0.212 Sum_probs=79.5
Q ss_pred EeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCc-chHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEc
Q 030094 5 ISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGV-EVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLD 83 (183)
Q Consensus 5 l~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvD 83 (183)
.-|-|--|..+.+-+.+-. +..+...+|.. ..+.+. +.+..|.++|||.|+..+.. + -.+++++++|+|
T Consensus 117 tQPRRlAA~svA~RvA~el----g~~lG~~VGY~vR~~~~~----s~~T~I~~~TdGiLLr~l~~-d-~~L~~~~~IIID 186 (1283)
T TIGR01967 117 TQPRRLAARTVAQRIAEEL----GTPLGEKVGYKVRFHDQV----SSNTLVKLMTDGILLAETQQ-D-RFLSRYDTIIID 186 (1283)
T ss_pred CCccHHHHHHHHHHHHHHh----CCCcceEEeeEEcCCccc----CCCceeeeccccHHHHHhhh-C-cccccCcEEEEc
Confidence 3466666665554333332 33444445532 222221 34689999999999999876 3 358999999999
Q ss_pred ccc-hhhccchHHH-HHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEc
Q 030094 84 EAD-RLLDMGFQKQ-ISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVR 138 (183)
Q Consensus 84 Ead-~ll~~~~~~~-l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~ 138 (183)
||| ++++.+|.-. +..++... ++.|++++|||++. ..+.+.|...|+ |.+.
T Consensus 187 EaHERsL~~D~LL~lLk~il~~r-pdLKlIlmSATld~--~~fa~~F~~apv-I~V~ 239 (1283)
T TIGR01967 187 EAHERSLNIDFLLGYLKQLLPRR-PDLKIIITSATIDP--ERFSRHFNNAPI-IEVS 239 (1283)
T ss_pred CcchhhccchhHHHHHHHHHhhC-CCCeEEEEeCCcCH--HHHHHHhcCCCE-EEEC
Confidence 999 5888877654 66665544 47899999999974 567776655554 4443
No 92
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=98.69 E-value=7.9e-08 Score=86.34 Aligned_cols=138 Identities=25% Similarity=0.238 Sum_probs=109.4
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
+++-.|-+.|..|-++.++.-... +.+++|.... +..+..+|-|-+-|..++.+ +.--.++++++|
T Consensus 343 ~iYTSPIKALSNQKfRDFk~tF~D-----vgLlTGDvqi--------nPeAsCLIMTTEILRsMLYr-gadliRDvE~VI 408 (1248)
T KOG0947|consen 343 TIYTSPIKALSNQKFRDFKETFGD-----VGLLTGDVQI--------NPEASCLIMTTEILRSMLYR-GADLIRDVEFVI 408 (1248)
T ss_pred eEecchhhhhccchHHHHHHhccc-----cceeecceee--------CCCcceEeehHHHHHHHHhc-ccchhhccceEE
Confidence 567789999999999988886432 2377776553 33467999999999999988 554578999999
Q ss_pred EcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCC-CCeEEEEccCCcccccccchhhcccCCCcc
Q 030094 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLR-NPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (183)
Q Consensus 82 vDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (183)
+||+|-+-+..-+.-.+.++=.+|+..++|++|||.|+. .+|+.|.-+ .-..|++... ...|.
T Consensus 409 FDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSATVPN~-~EFA~WIGRtK~K~IyViST---------------~kRPV 472 (1248)
T KOG0947|consen 409 FDEVHYINDVERGVVWEEVIIMLPRHVNFILLSATVPNT-LEFADWIGRTKQKTIYVIST---------------SKRPV 472 (1248)
T ss_pred EeeeeecccccccccceeeeeeccccceEEEEeccCCCh-HHHHHHhhhccCceEEEEec---------------CCCcc
Confidence 999999977666666677788899999999999999998 788888766 4456666666 56788
Q ss_pred CceEEEEEe
Q 030094 161 GLHLEVIWN 169 (183)
Q Consensus 161 ~l~q~~i~~ 169 (183)
.++||+..-
T Consensus 473 PLEh~l~t~ 481 (1248)
T KOG0947|consen 473 PLEHYLYTK 481 (1248)
T ss_pred ceEEEEEec
Confidence 888887654
No 93
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=98.51 E-value=2.5e-07 Score=72.98 Aligned_cols=82 Identities=24% Similarity=0.446 Sum_probs=67.0
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcC-cchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGG-VEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
+|||+++-..|..+.+.++.+... +.+++-+.+. ...+++...+.....+|.||||+||..+++. +.+.+++++.+
T Consensus 129 ~lvvs~SalRa~dl~R~l~~~~~k--~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~-~~L~l~~l~~i 205 (252)
T PF14617_consen 129 VLVVSSSALRAADLIRALRSFKGK--DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLEN-GALSLSNLKRI 205 (252)
T ss_pred EEEEcchHHHHHHHHHHHHhhccC--CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHc-CCCCcccCeEE
Confidence 689999999999888888887321 2344444443 4788999999878899999999999999988 99999999999
Q ss_pred EEcccc
Q 030094 81 VLDEAD 86 (183)
Q Consensus 81 VvDEad 86 (183)
|+|--+
T Consensus 206 vlD~s~ 211 (252)
T PF14617_consen 206 VLDWSY 211 (252)
T ss_pred EEcCCc
Confidence 999753
No 94
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=98.50 E-value=7.4e-07 Score=66.10 Aligned_cols=110 Identities=17% Similarity=0.121 Sum_probs=68.1
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEE-----------EcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcC
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLL-----------VGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMD 70 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~-----------~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~ 70 (183)
+++++|+..|+.|..+.+..+.... ...... ..................++++.|...+........
T Consensus 53 ~l~~~p~~~l~~Q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~ 130 (184)
T PF04851_consen 53 VLIVAPNISLLEQWYDEFDDFGSEK--YNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEK 130 (184)
T ss_dssp EEEEESSHHHHHHHHHHHHHHSTTS--EEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH--
T ss_pred eeEecCHHHHHHHHHHHHHHhhhhh--hhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhccccc
Confidence 6899999999999999997665432 111111 111111111122334578999999999998876411
Q ss_pred C----------cCCCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCC
Q 030094 71 V----------LDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (183)
Q Consensus 71 ~----------~~l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~ 118 (183)
. .......++|+||||+.-+..- ...+++ .+..-++++|||+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~~~~---~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 131 KIDESARRSYKLLKNKFDLVIIDEAHHYPSDSS---YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp -------GCHHGGGGSESEEEEETGGCTHHHHH---HHHHHH--SSCCEEEEEESS-S
T ss_pred ccccchhhhhhhccccCCEEEEehhhhcCCHHH---HHHHHc--CCCCeEEEEEeCcc
Confidence 1 1234567999999999865431 334444 56778999999975
No 95
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.45 E-value=4.4e-07 Score=80.00 Aligned_cols=135 Identities=22% Similarity=0.202 Sum_probs=99.2
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
+++-.|-++|..|-|+.+..=.+ .+.+.+|.-.+ +-.+.-+|-|-+-|..++.+ ++--++.+.++|
T Consensus 175 VIYTSPIKALSNQKYREl~~EF~-----DVGLMTGDVTI--------nP~ASCLVMTTEILRsMLYR-GSEvmrEVaWVI 240 (1041)
T KOG0948|consen 175 VIYTSPIKALSNQKYRELLEEFK-----DVGLMTGDVTI--------NPDASCLVMTTEILRSMLYR-GSEVMREVAWVI 240 (1041)
T ss_pred EEeeChhhhhcchhHHHHHHHhc-----ccceeecceee--------CCCCceeeeHHHHHHHHHhc-cchHhheeeeEE
Confidence 46678999999999998776433 35566675553 23456789999999999988 777789999999
Q ss_pred EcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCC---CCeEEEEccCCcccccccchhhcccCCC
Q 030094 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLR---NPVRVEVRAESKSHHVSASSQQLASSKT 158 (183)
Q Consensus 82 vDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (183)
+||+|-|-|..-+--.+.=+=.+|++.+.+|+|||+|+. .+|+.|... .|..|-..+ +.
T Consensus 241 FDEIHYMRDkERGVVWEETIIllP~~vr~VFLSATiPNA-~qFAeWI~~ihkQPcHVVYTd-----------------yR 302 (1041)
T KOG0948|consen 241 FDEIHYMRDKERGVVWEETIILLPDNVRFVFLSATIPNA-RQFAEWICHIHKQPCHVVYTD-----------------YR 302 (1041)
T ss_pred eeeehhccccccceeeeeeEEeccccceEEEEeccCCCH-HHHHHHHHHHhcCCceEEeec-----------------CC
Confidence 999999987543333333334568999999999999998 788887654 676554333 34
Q ss_pred ccCceEEEEE
Q 030094 159 PLGLHLEVIW 168 (183)
Q Consensus 159 ~~~l~q~~i~ 168 (183)
|-.++||.+.
T Consensus 303 PTPLQHyifP 312 (1041)
T KOG0948|consen 303 PTPLQHYIFP 312 (1041)
T ss_pred CCcceeeeec
Confidence 7778888554
No 96
>PRK09694 helicase Cas3; Provisional
Probab=98.43 E-value=1.8e-06 Score=78.94 Aligned_cols=125 Identities=14% Similarity=0.136 Sum_probs=78.7
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhh-CCCceEEEEEcCcchHHHH---------------------HHHHh-----cCCcE
Q 030094 2 GMIISPTRELSSQIYHVAQPFIST-LPDVKSVLLVGGVEVKADV---------------------KKIEE-----EGANL 54 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~-~~~~~~~~~~g~~~~~~~~---------------------~~l~~-----~~~~I 54 (183)
.++..||+..+.|+++.+.++.+. ++...+.+..|+....... ..+.+ --.+|
T Consensus 334 i~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi 413 (878)
T PRK09694 334 IIFALPTQATANAMLSRLEALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQI 413 (878)
T ss_pred EEEECcHHHHHHHHHHHHHHHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCE
Confidence 468899999999999998875542 2345667777665422110 11110 12689
Q ss_pred EEeCcHHHHHHHHhcCCcCCCCc----eEEEEcccchhhccchHHHHHHHHHhCC-CCCeEEEEeecCChHHHH-HHHh
Q 030094 55 LIGTPGRLYDIMERMDVLDFRNL----EILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAVEE-LSKA 127 (183)
Q Consensus 55 iV~TP~~l~~~l~~~~~~~l~~l----~~lVvDEad~ll~~~~~~~l~~i~~~l~-~~~Q~v~~SAT~~~~v~~-~~~~ 127 (183)
+|||+.-++...-..+...++.. +.+|+||+|.+ +......+..+++.+. ....++++|||+|....+ +.+.
T Consensus 414 ~V~TiDQlL~a~l~~kh~~lR~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a 491 (878)
T PRK09694 414 GVCTIDQVLISVLPVKHRFIRGFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDT 491 (878)
T ss_pred EEcCHHHHHHHHHccchHHHHHHhhccCeEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHH
Confidence 99999887744332122222222 58999999997 4334455566665543 356799999999988664 3443
No 97
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.42 E-value=2e-06 Score=78.12 Aligned_cols=87 Identities=21% Similarity=0.344 Sum_probs=63.1
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCc-c---hHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGV-E---VKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~-~---~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
++|++||+-|+.|+++-+++++.......+...+-+. + .++-...+.+++.||+|+|.+-|..-++... -.+.
T Consensus 128 ~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~---~~kF 204 (1187)
T COG1110 128 VYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELS---KLKF 204 (1187)
T ss_pred EEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhc---ccCC
Confidence 6899999999999999999998765224444433332 2 3334456666789999999988877766522 2346
Q ss_pred eEEEEcccchhhcc
Q 030094 78 EILVLDEADRLLDM 91 (183)
Q Consensus 78 ~~lVvDEad~ll~~ 91 (183)
+++.+|++|.++..
T Consensus 205 dfifVDDVDA~Lka 218 (1187)
T COG1110 205 DFIFVDDVDAILKA 218 (1187)
T ss_pred CEEEEccHHHHHhc
Confidence 79999999999864
No 98
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=98.42 E-value=1.2e-06 Score=74.74 Aligned_cols=102 Identities=20% Similarity=0.270 Sum_probs=66.6
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcC-CcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEG-ANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
+||||||++|+.|..+.+.+.... + .....+|+... +.. ..|.|+|-+.+...-.. ..+..++..++
T Consensus 83 ~Lvlv~~~~L~~Qw~~~~~~~~~~--~-~~~g~~~~~~~--------~~~~~~i~vat~qtl~~~~~l-~~~~~~~~~li 150 (442)
T COG1061 83 TLVLVPTKELLDQWAEALKKFLLL--N-DEIGIYGGGEK--------ELEPAKVTVATVQTLARRQLL-DEFLGNEFGLI 150 (442)
T ss_pred EEEEECcHHHHHHHHHHHHHhcCC--c-cccceecCcee--------ccCCCcEEEEEhHHHhhhhhh-hhhcccccCEE
Confidence 699999999999998766665422 1 12233333332 112 36999999988874211 23444578899
Q ss_pred EEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCCh
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~ 119 (183)
|+||+|++....+......+....+ .+.+|||+..
T Consensus 151 I~DE~Hh~~a~~~~~~~~~~~~~~~----~LGLTATp~R 185 (442)
T COG1061 151 IFDEVHHLPAPSYRRILELLSAAYP----RLGLTATPER 185 (442)
T ss_pred EEEccccCCcHHHHHHHHhhhcccc----eeeeccCcee
Confidence 9999999976655554444333332 8999999763
No 99
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.36 E-value=2e-06 Score=76.99 Aligned_cols=106 Identities=11% Similarity=0.128 Sum_probs=70.6
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhc-------CCcCC
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM-------DVLDF 74 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~-------~~~~l 74 (183)
+|||||+.+|+.|..+.+.+++. .+...+..+.|+.... . ....+|+|+|...+.....+. ..+.-
T Consensus 301 tLILvps~~Lv~QW~~ef~~~~~-l~~~~I~~~tg~~k~~-----~-~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~ 373 (732)
T TIGR00603 301 CLVLCTSAVSVEQWKQQFKMWST-IDDSQICRFTSDAKER-----F-HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTN 373 (732)
T ss_pred EEEEeCcHHHHHHHHHHHHHhcC-CCCceEEEEecCcccc-----c-ccCCcEEEEEHHHhhcccccchhhhHHHHHhcc
Confidence 69999999999999999998853 3345566666643211 1 124689999998775332210 11223
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCCh
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~ 119 (183)
....++|+||+|++-. .....++..++ .+..+++|||+..
T Consensus 374 ~~~gLII~DEvH~lpA----~~fr~il~~l~-a~~RLGLTATP~R 413 (732)
T TIGR00603 374 REWGLILLDEVHVVPA----AMFRRVLTIVQ-AHCKLGLTATLVR 413 (732)
T ss_pred ccCCEEEEEccccccH----HHHHHHHHhcC-cCcEEEEeecCcc
Confidence 4677999999999843 33444555553 4567999999863
No 100
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=98.34 E-value=5.9e-06 Score=72.15 Aligned_cols=128 Identities=17% Similarity=0.223 Sum_probs=92.2
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
.|||.|--.|.....+.++.. +++++.+.+.-+.++... .+..+..+++--+|++|..---. +.+.-..+.
T Consensus 60 TLVVSPLiSLM~DQV~~l~~~-----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~-~~L~~~~i~ 133 (590)
T COG0514 60 TLVVSPLISLMKDQVDQLEAA-----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFL-ELLKRLPIS 133 (590)
T ss_pred EEEECchHHHHHHHHHHHHHc-----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHH-HHHHhCCCc
Confidence 689999999998666655554 678888887766554433 34345589999999998654322 234456788
Q ss_pred EEEEcccchhhccc--hHHHHHHH---HHhCCCCCeEEEEeecCChHHHHHHHhhCC--CCeEEE
Q 030094 79 ILVLDEADRLLDMG--FQKQISYI---ISRLPKLRRTGLFSATQTEAVEELSKAGLR--NPVRVE 136 (183)
Q Consensus 79 ~lVvDEad~ll~~~--~~~~l~~i---~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~--~~~~i~ 136 (183)
++|+||||.+..+| |.++...+ ...+| +..++.++||-++.+..-+...+. +|..+.
T Consensus 134 l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~ 197 (590)
T COG0514 134 LVAIDEAHCISQWGHDFRPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFR 197 (590)
T ss_pred eEEechHHHHhhcCCccCHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEE
Confidence 99999999999886 77766655 44454 778999999999998887766544 554443
No 101
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.22 E-value=1.2e-05 Score=71.92 Aligned_cols=107 Identities=14% Similarity=0.107 Sum_probs=66.3
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHh-cCCcCCCCc-eE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-MDVLDFRNL-EI 79 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~-~~~~~l~~l-~~ 79 (183)
+|||||+.+|..|..+.+..+.... . .+..+...-...+......|+|+|.+++...+.. ...+...+- -+
T Consensus 296 vl~lvdR~~L~~Q~~~~f~~~~~~~--~-----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~l 368 (667)
T TIGR00348 296 VFFVVDRRELDYQLMKEFQSLQKDC--A-----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVV 368 (667)
T ss_pred EEEEECcHHHHHHHHHHHHhhCCCC--C-----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEE
Confidence 6899999999999999998875321 1 1112222222334344578999999999865432 011211111 17
Q ss_pred EEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCCh
Q 030094 80 LVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (183)
Q Consensus 80 lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~ 119 (183)
+|+||||+.-..++. ..+.+.+| +...++||||.-.
T Consensus 369 vIvDEaHrs~~~~~~---~~l~~~~p-~a~~lGfTaTP~~ 404 (667)
T TIGR00348 369 VIFDEAHRSQYGELA---KNLKKALK-NASFFGFTGTPIF 404 (667)
T ss_pred EEEEcCccccchHHH---HHHHhhCC-CCcEEEEeCCCcc
Confidence 999999996432222 22234554 5789999999853
No 102
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.19 E-value=7.8e-06 Score=59.09 Aligned_cols=106 Identities=10% Similarity=0.152 Sum_probs=62.7
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
.|||.|||-+|..+++.++.. +++.. ..... . .. .++--|=|.|.+.+.+.+-+ .....+.+++|
T Consensus 36 vLvL~PTRvva~em~~aL~~~-----~~~~~--t~~~~--~---~~-~g~~~i~vMc~at~~~~~~~--p~~~~~yd~II 100 (148)
T PF07652_consen 36 VLVLAPTRVVAEEMYEALKGL-----PVRFH--TNARM--R---TH-FGSSIIDVMCHATYGHFLLN--PCRLKNYDVII 100 (148)
T ss_dssp EEEEESSHHHHHHHHHHTTTS-----SEEEE--STTSS----------SSSSEEEEEHHHHHHHHHT--SSCTTS-SEEE
T ss_pred EEEecccHHHHHHHHHHHhcC-----CcccC--ceeee--c---cc-cCCCcccccccHHHHHHhcC--cccccCccEEE
Confidence 689999999999887766543 33332 11111 0 11 24556778899998887755 45578899999
Q ss_pred Ecccchhhcc--chHHHHHHHHHhCCCCCeEEEEeecCChHHHHH
Q 030094 82 LDEADRLLDM--GFQKQISYIISRLPKLRRTGLFSATQTEAVEEL 124 (183)
Q Consensus 82 vDEad~ll~~--~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~ 124 (183)
+||+|..-.. .+...+..... .....++++|||.|.....+
T Consensus 101 ~DEcH~~Dp~sIA~rg~l~~~~~--~g~~~~i~mTATPPG~~~~f 143 (148)
T PF07652_consen 101 MDECHFTDPTSIAARGYLRELAE--SGEAKVIFMTATPPGSEDEF 143 (148)
T ss_dssp ECTTT--SHHHHHHHHHHHHHHH--TTS-EEEEEESS-TT---SS
T ss_pred EeccccCCHHHHhhheeHHHhhh--ccCeeEEEEeCCCCCCCCCC
Confidence 9999996322 13344444433 23467999999999875433
No 103
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.02 E-value=2.6e-05 Score=73.27 Aligned_cols=113 Identities=12% Similarity=0.062 Sum_probs=71.9
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhc----CCcCCCCc
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM----DVLDFRNL 77 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~----~~~~l~~l 77 (183)
+|||||+++|+.|..+.+..+.... ......+++.....+ ........|+|+|.+++...+... ..+.+.+.
T Consensus 466 VLfLvDR~~L~~Qa~~~F~~~~~~~-~~~~~~i~~i~~L~~---~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~f 541 (1123)
T PRK11448 466 ILFLVDRSALGEQAEDAFKDTKIEG-DQTFASIYDIKGLED---KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQY 541 (1123)
T ss_pred EEEEecHHHHHHHHHHHHHhccccc-ccchhhhhchhhhhh---hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcc
Confidence 6899999999999999988863211 111111222111111 111345789999999987765321 12456778
Q ss_pred eEEEEcccchhhcc---------------chHHHHHHHHHhCCCCCeEEEEeecCChH
Q 030094 78 EILVLDEADRLLDM---------------GFQKQISYIISRLPKLRRTGLFSATQTEA 120 (183)
Q Consensus 78 ~~lVvDEad~ll~~---------------~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~ 120 (183)
.++|+||||+-... .+......++..+ +.-.++||||....
T Consensus 542 dlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yF--dA~~IGLTATP~r~ 597 (1123)
T PRK11448 542 DCIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYF--DAVKIGLTATPALH 597 (1123)
T ss_pred cEEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhc--CccEEEEecCCccc
Confidence 89999999996310 1235566677765 35679999998644
No 104
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=97.96 E-value=2.5e-05 Score=62.44 Aligned_cols=110 Identities=20% Similarity=0.214 Sum_probs=66.1
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHh--cCCcCCCCceE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER--MDVLDFRNLEI 79 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~--~~~~~l~~l~~ 79 (183)
+||+||+ .+..|..+.+.+.+... .+++....|+.......... ....+++|+|.+.+...... ...+.--+...
T Consensus 61 ~LIv~P~-~l~~~W~~E~~~~~~~~-~~~v~~~~~~~~~~~~~~~~-~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~ 137 (299)
T PF00176_consen 61 TLIVVPS-SLLSQWKEEIEKWFDPD-SLRVIIYDGDSERRRLSKNQ-LPKYDVVITTYETLRKARKKKDKEDLKQIKWDR 137 (299)
T ss_dssp EEEEE-T-TTHHHHHHHHHHHSGT--TS-EEEESSSCHHHHTTSSS-CCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEE
T ss_pred eeEeecc-chhhhhhhhhccccccc-cccccccccccccccccccc-cccceeeecccccccccccccccccccccccee
Confidence 6999999 77788888888887432 56776666655222221111 24689999999988811000 01111234789
Q ss_pred EEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecC
Q 030094 80 LVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (183)
Q Consensus 80 lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~ 117 (183)
+|+||+|.+- +........+..+. ....+++|||.
T Consensus 138 vIvDEaH~~k--~~~s~~~~~l~~l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 138 VIVDEAHRLK--NKDSKRYKALRKLR-ARYRWLLSGTP 172 (299)
T ss_dssp EEETTGGGGT--TTTSHHHHHHHCCC-ECEEEEE-SS-
T ss_pred EEEecccccc--cccccccccccccc-cceEEeecccc
Confidence 9999999983 23334444455554 67788999995
No 105
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=97.93 E-value=3.8e-05 Score=69.90 Aligned_cols=85 Identities=18% Similarity=0.203 Sum_probs=66.1
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHH-HHHHHhc-----CCcCC
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERM-----DVLDF 74 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l-~~~l~~~-----~~~~l 74 (183)
++-|++||.-||.|-++.+..+..++ ++++.++.++.+.++....+ .+||+.||..-+ .++++.+ ...-.
T Consensus 125 ~VhvvT~ndyLA~RD~e~m~~l~~~l-Gl~v~~i~~~~~~~err~~Y---~~dI~YGT~~e~gFDYLrD~~~~~~~~~vq 200 (913)
T PRK13103 125 GVHVVTVNDYLARRDANWMRPLYEFL-GLSVGIVTPFQPPEEKRAAY---AADITYGTNNEFGFDYLRDNMAFSLDDKFQ 200 (913)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhccc-CCEEEEECCCCCHHHHHHHh---cCCEEEEcccccccchhhccceechhhhcc
Confidence 46789999999999999999999888 99999998877655554443 599999999886 3334320 11123
Q ss_pred CCceEEEEcccchhh
Q 030094 75 RNLEILVLDEADRLL 89 (183)
Q Consensus 75 ~~l~~lVvDEad~ll 89 (183)
+.+.+.|+||+|.+|
T Consensus 201 r~l~~aIVDEvDsiL 215 (913)
T PRK13103 201 RELNFAVIDEVDSIL 215 (913)
T ss_pred cccceeEechhhhee
Confidence 788999999999987
No 106
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=97.90 E-value=3.6e-05 Score=69.98 Aligned_cols=114 Identities=15% Similarity=0.129 Sum_probs=75.8
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhc--CCcCCCCceE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM--DVLDFRNLEI 79 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~--~~~~l~~l~~ 79 (183)
+|.++||+.|+.|+...+......-.-.+...+.|....+.+.+. -+|+|+|+-|+.+-.++-.. ..-...++++
T Consensus 559 VIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g~ltqEYsinp---~nCQVLITvPecleslLlspp~~q~~cerIRy 635 (1330)
T KOG0949|consen 559 VIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLGDLTQEYSINP---WNCQVLITVPECLESLLLSPPHHQKFCERIRY 635 (1330)
T ss_pred EEEecchHHHhhhhhHHHHHhhccCccccchhhHhhhhHHhcCCc---hhceEEEEchHHHHHHhcCchhhhhhhhcceE
Confidence 578999999999998776665422112344444554444444332 37999999999998888651 1234688999
Q ss_pred EEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChH
Q 030094 80 LVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120 (183)
Q Consensus 80 lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~ 120 (183)
+|+||+|.+-...-..-.+.++-.. .|-++.+|||+.+.
T Consensus 636 iIfDEVH~iG~~ed~l~~Eqll~li--~CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 636 IIFDEVHLIGNEEDGLLWEQLLLLI--PCPFLVLSATIGNP 674 (1330)
T ss_pred EEechhhhccccccchHHHHHHHhc--CCCeeEEecccCCH
Confidence 9999999984332122222233333 47789999999876
No 107
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=97.80 E-value=0.00028 Score=65.74 Aligned_cols=107 Identities=15% Similarity=0.185 Sum_probs=70.4
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH--HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK--KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEI 79 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~--~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~ 79 (183)
.|||||. .+..|..+.+.+++ |.+++..+.|......... .+.....+|+|+|.+.+..... .+.--...+
T Consensus 222 ~LIVvP~-SlL~nW~~Ei~kw~---p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~---~L~k~~W~~ 294 (1033)
T PLN03142 222 HMVVAPK-STLGNWMNEIRRFC---PVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT---ALKRFSWRY 294 (1033)
T ss_pred EEEEeCh-HHHHHHHHHHHHHC---CCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH---HhccCCCCE
Confidence 5899996 44566777776654 6778888887654332221 2223568999999988765432 233335679
Q ss_pred EEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCC
Q 030094 80 LVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (183)
Q Consensus 80 lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~ 118 (183)
+|+||||.+=+ ....+...++.+. ....+++|+|.-
T Consensus 295 VIvDEAHrIKN--~~Sklskalr~L~-a~~RLLLTGTPl 330 (1033)
T PLN03142 295 IIIDEAHRIKN--ENSLLSKTMRLFS-TNYRLLITGTPL 330 (1033)
T ss_pred EEEcCccccCC--HHHHHHHHHHHhh-cCcEEEEecCCC
Confidence 99999999843 3445566666664 445678899963
No 108
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=97.69 E-value=0.0004 Score=61.98 Aligned_cols=111 Identities=22% Similarity=0.276 Sum_probs=73.9
Q ss_pred EEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH--HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK--KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 3 lIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~--~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
||+||-.-|.. ....+.++.|++.+...+|......... .+..+..||+|+|-+..+.- . ..+.--..+++
T Consensus 221 LVi~P~StL~N----W~~Ef~rf~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k-~~lk~~~W~yl 293 (971)
T KOG0385|consen 221 LVIAPKSTLDN----WMNEFKRFTPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--K-SFLKKFNWRYL 293 (971)
T ss_pred EEEeeHhhHHH----HHHHHHHhCCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--H-HHHhcCCceEE
Confidence 78999777654 4455556678999999999875433322 23345789999998765443 1 23444567899
Q ss_pred EEcccchhhccchHHHHHHHHHhCCCCCeEEEEeec-CChHHHH
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT-QTEAVEE 123 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT-~~~~v~~ 123 (183)
|+||||++=+ -...+..+++.+......++ +.| +.+.+.+
T Consensus 294 vIDEaHRiKN--~~s~L~~~lr~f~~~nrLLl-TGTPLQNNL~E 334 (971)
T KOG0385|consen 294 VIDEAHRIKN--EKSKLSKILREFKTDNRLLL-TGTPLQNNLHE 334 (971)
T ss_pred Eechhhhhcc--hhhHHHHHHHHhcccceeEe-eCCcccccHHH
Confidence 9999999843 45666688888865555555 555 4544443
No 109
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.65 E-value=0.00051 Score=63.04 Aligned_cols=87 Identities=23% Similarity=0.332 Sum_probs=60.9
Q ss_pred CEEEEeCcHHHHHHH-HHHHHHhhhhCCCceEEEEEcCcch------HHHH-----------------------------
Q 030094 1 MGMIISPTRELSSQI-YHVAQPFISTLPDVKSVLLVGGVEV------KADV----------------------------- 44 (183)
Q Consensus 1 ~alIl~PtreLa~Qi-~~~~~~l~~~~~~~~~~~~~g~~~~------~~~~----------------------------- 44 (183)
.++|++||++|+.|+ .+.+..+.+.+ ++++..+.|+.+. .+..
T Consensus 293 ~vvI~t~T~~Lq~Ql~~~~i~~l~~~~-~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~ 371 (820)
T PRK07246 293 QIIVSVPTKILQDQIMAEEVKAIQEVF-HIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLD 371 (820)
T ss_pred cEEEEeCcHHHHHHHHHHHHHHHHHhc-CCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHh
Confidence 479999999999999 57788887776 6778777766431 0000
Q ss_pred ------------HHH-----------------------HhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEcccchhh
Q 030094 45 ------------KKI-----------------------EEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLL 89 (183)
Q Consensus 45 ------------~~l-----------------------~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEad~ll 89 (183)
..+ ....+||+|++..-|...+.. +. .+-.-+.+|+||||++-
T Consensus 372 El~~~~~~~~~w~~i~~~~~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~-~~-~~p~~~~lIiDEAH~l~ 449 (820)
T PRK07246 372 EIKQKQRYAAYFDQLKHDGNLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQD-DK-DFARNKVLVFDEAQKLM 449 (820)
T ss_pred hccCCccccHHHHHhhccCCCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhh-cc-CCCCCCEEEEECcchhH
Confidence 000 001379999999988777654 32 24567899999999986
Q ss_pred c
Q 030094 90 D 90 (183)
Q Consensus 90 ~ 90 (183)
+
T Consensus 450 ~ 450 (820)
T PRK07246 450 L 450 (820)
T ss_pred H
Confidence 3
No 110
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.60 E-value=0.00064 Score=60.45 Aligned_cols=40 Identities=23% Similarity=0.180 Sum_probs=30.2
Q ss_pred cCCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEcccchhhc
Q 030094 50 EGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLD 90 (183)
Q Consensus 50 ~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEad~ll~ 90 (183)
..+||+|+++.-|...++....+ +-....+|+||||++-+
T Consensus 181 ~~AdivItNHalL~~~~~~~~~i-LP~~~~lIiDEAH~L~d 220 (636)
T TIGR03117 181 RRCRILFCTHAMLGLAFRDKWGL-LPQPDILIVDEAHLFEQ 220 (636)
T ss_pred ccCCEEEECHHHHHHHhhhhcCC-CCCCCEEEEeCCcchHH
Confidence 45799999999888766542233 34478999999999864
No 111
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=97.46 E-value=0.0028 Score=58.68 Aligned_cols=129 Identities=22% Similarity=0.274 Sum_probs=87.5
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhc--CCcEEEeCcHHHHHHHHhc-CCcCCC
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEE--GANLLIGTPGRLYDIMERM-DVLDFR 75 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~--~~~IiV~TP~~l~~~l~~~-~~~~l~ 75 (183)
.|||.|-..|.... +..+.+. ++....+.++....++.. .+..+ ..+|+--||+.+..--... ...++.
T Consensus 307 tvVISPL~SLm~DQ---v~~L~~~--~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~ 381 (941)
T KOG0351|consen 307 TVVISPLISLMQDQ---VTHLSKK--GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLY 381 (941)
T ss_pred eEEeccHHHHHHHH---HHhhhhc--CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhcc
Confidence 58999999998844 4445322 788888888877765444 34344 5899999999876543221 123355
Q ss_pred C---ceEEEEcccchhhccc--hHHHHHH---HHHhCCCCCeEEEEeecCChHHHHHHHhh--CCCCeEEE
Q 030094 76 N---LEILVLDEADRLLDMG--FQKQISY---IISRLPKLRRTGLFSATQTEAVEELSKAG--LRNPVRVE 136 (183)
Q Consensus 76 ~---l~~lVvDEad~ll~~~--~~~~l~~---i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~--~~~~~~i~ 136 (183)
. +..+|+||||....+| |+++-++ +..+.+. .-++..+||-+..+..=+-.. +++|..+.
T Consensus 382 ~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~-vP~iALTATAT~~v~~DIi~~L~l~~~~~~~ 451 (941)
T KOG0351|consen 382 ARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPG-VPFIALTATATERVREDVIRSLGLRNPELFK 451 (941)
T ss_pred CCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCC-CCeEEeehhccHHHHHHHHHHhCCCCcceec
Confidence 5 8899999999998775 6655554 3444443 678999999999887644444 55776543
No 112
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=97.41 E-value=0.00058 Score=57.49 Aligned_cols=130 Identities=21% Similarity=0.210 Sum_probs=86.1
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhc--CCcEEEeCcHHHHH-----HHHhcC
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEE--GANLLIGTPGRLYD-----IMERMD 70 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~--~~~IiV~TP~~l~~-----~l~~~~ 70 (183)
+.||+.|--.|.....+.+.+| .+.+..+.+..+..+..+ .+... +..++--||+.-.. +++ +
T Consensus 63 ITIV~SPLiALIkDQiDHL~~L-----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn--~ 135 (641)
T KOG0352|consen 63 ITIVISPLIALIKDQIDHLKRL-----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLN--G 135 (641)
T ss_pred eEEEehHHHHHHHHHHHHHHhc-----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHH--H
Confidence 3578889888887666666665 566666666666554444 33333 35688889986322 221 1
Q ss_pred CcCCCCceEEEEcccchhhccc--hHHHHHHHH---HhCCCCCeEEEEeecCChHHHH--HHHhhCCCCeEEEEc
Q 030094 71 VLDFRNLEILVLDEADRLLDMG--FQKQISYII---SRLPKLRRTGLFSATQTEAVEE--LSKAGLRNPVRVEVR 138 (183)
Q Consensus 71 ~~~l~~l~~lVvDEad~ll~~~--~~~~l~~i~---~~l~~~~Q~v~~SAT~~~~v~~--~~~~~~~~~~~i~~~ 138 (183)
-.+-+.+.++|+||||..-.+| |.++...+- +.+ ...-.+.++||-+++|.+ +....+++|+-|.-.
T Consensus 136 L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~-~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkT 209 (641)
T KOG0352|consen 136 LANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVC-PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKT 209 (641)
T ss_pred HhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhC-CCCceEEeecccChhHHHHHHHHHhhcCcHHhccC
Confidence 2234668899999999998775 666655543 233 356678889999999886 445667899877643
No 113
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=97.30 E-value=0.00081 Score=60.25 Aligned_cols=85 Identities=14% Similarity=0.153 Sum_probs=64.9
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHH-HHHHhc-----CCcCC
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLY-DIMERM-----DVLDF 74 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~-~~l~~~-----~~~~l 74 (183)
++-|++||.-||.|-++.+..+..++ ++++.++.++.+.++.... ..|||.=||...+- ++++.+ ...-.
T Consensus 121 ~VhvvT~NdyLA~RDae~m~~ly~~L-GLsvg~i~~~~~~~err~a---Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~ 196 (764)
T PRK12326 121 RVHVITVNDYLARRDAEWMGPLYEAL-GLTVGWITEESTPEERRAA---YACDVTYASVNEIGFDVLRDQLVTDVADLVS 196 (764)
T ss_pred CeEEEcCCHHHHHHHHHHHHHHHHhc-CCEEEEECCCCCHHHHHHH---HcCCCEEcCCcccccccchhhhccChHhhcC
Confidence 36789999999999999999999998 9999999887775544433 36899999998752 233220 11224
Q ss_pred CCceEEEEcccchhh
Q 030094 75 RNLEILVLDEADRLL 89 (183)
Q Consensus 75 ~~l~~lVvDEad~ll 89 (183)
+...+.|+||+|.+|
T Consensus 197 R~~~faIVDEvDSiL 211 (764)
T PRK12326 197 PNPDVAIIDEADSVL 211 (764)
T ss_pred Cccceeeecchhhhe
Confidence 667899999999987
No 114
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=97.26 E-value=0.00091 Score=60.66 Aligned_cols=85 Identities=16% Similarity=0.140 Sum_probs=65.4
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHH-HHHHhc-----CCcCC
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLY-DIMERM-----DVLDF 74 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~-~~l~~~-----~~~~l 74 (183)
++-|++||.-||.|-++.+..+..++ ++++.++.|+.+.++.... ..+||+-||...+- ++++.+ ...-.
T Consensus 123 ~v~vvT~neyLA~Rd~e~~~~~~~~L-Gl~vg~i~~~~~~~~r~~~---y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~ 198 (796)
T PRK12906 123 GVHVVTVNEYLSSRDATEMGELYRWL-GLTVGLNLNSMSPDEKRAA---YNCDITYSTNSELGFDYLRDNMVVYKEQMVQ 198 (796)
T ss_pred CeEEEeccHHHHHhhHHHHHHHHHhc-CCeEEEeCCCCCHHHHHHH---hcCCCeecCCccccccchhhccccchhhhhc
Confidence 46789999999999999999999998 9999999887665554433 36899999998863 333321 11123
Q ss_pred CCceEEEEcccchhh
Q 030094 75 RNLEILVLDEADRLL 89 (183)
Q Consensus 75 ~~l~~lVvDEad~ll 89 (183)
+...+.|+||+|.+|
T Consensus 199 r~~~~aIvDEvDSiL 213 (796)
T PRK12906 199 RPLNYAIVDEVDSIL 213 (796)
T ss_pred cCcceeeeccchhee
Confidence 567899999999987
No 115
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=97.21 E-value=0.0016 Score=60.56 Aligned_cols=126 Identities=19% Similarity=0.205 Sum_probs=67.2
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHH----HHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADV----KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~----~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
+||+||+ .|..|....+.+.. ++....+.++ ...... +.. ...+++|+|.+.+...-.....+.-...
T Consensus 202 vLIVvP~-sL~~QW~~El~~kF----~l~~~i~~~~-~~~~~~~~~~~pf--~~~~~vI~S~~~l~~~~~~~~~l~~~~w 273 (956)
T PRK04914 202 VLILVPE-TLQHQWLVEMLRRF----NLRFSLFDEE-RYAEAQHDADNPF--ETEQLVICSLDFLRRNKQRLEQALAAEW 273 (956)
T ss_pred EEEEcCH-HHHHHHHHHHHHHh----CCCeEEEcCc-chhhhcccccCcc--ccCcEEEEEHHHhhhCHHHHHHHhhcCC
Confidence 6899998 78998888775432 3333333322 211110 111 1357999998776541110011222456
Q ss_pred eEEEEcccchhhcc-chHHHHHHHHHhCC-CCCeEEEEeecCCh-HHH-HHHHhhCCCCeEE
Q 030094 78 EILVLDEADRLLDM-GFQKQISYIISRLP-KLRRTGLFSATQTE-AVE-ELSKAGLRNPVRV 135 (183)
Q Consensus 78 ~~lVvDEad~ll~~-~~~~~l~~i~~~l~-~~~Q~v~~SAT~~~-~v~-~~~~~~~~~~~~i 135 (183)
+++|+||||++-.. +....-...++.+. +....+++|||.-. ... .+..-.+-+|..+
T Consensus 274 dlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f 335 (956)
T PRK04914 274 DLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRF 335 (956)
T ss_pred CEEEEechhhhccCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcC
Confidence 79999999998521 01111122233332 34578999999863 233 3333344466554
No 116
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=97.19 E-value=0.0048 Score=55.47 Aligned_cols=116 Identities=15% Similarity=0.225 Sum_probs=73.9
Q ss_pred EEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhc---CCcEEEeCcHHHHHHHHhcCC-cCCCCce
Q 030094 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEE---GANLLIGTPGRLYDIMERMDV-LDFRNLE 78 (183)
Q Consensus 3 lIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~IiV~TP~~l~~~l~~~~~-~~l~~l~ 78 (183)
||+||+.-| ..+++.+.+.+|.+++-..+|...-..+.+..... ..||+++|-.-...-=.. +. +.-.++.
T Consensus 452 LVVvPsSTl----eNWlrEf~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdD-Rsflk~~~~n 526 (941)
T KOG0389|consen 452 LVVVPSSTL----ENWLREFAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDD-RSFLKNQKFN 526 (941)
T ss_pred EEEecchhH----HHHHHHHHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHH-HHHHHhcccc
Confidence 799997665 46777788888999999999988766666655432 579999997432110000 00 1134566
Q ss_pred EEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeec-CChHHHHHHH
Q 030094 79 ILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT-QTEAVEELSK 126 (183)
Q Consensus 79 ~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT-~~~~v~~~~~ 126 (183)
++|+||+|.|=+.+ .....+++. ++ ..+.++++.| +.+.+.+++.
T Consensus 527 ~viyDEgHmLKN~~-SeRy~~LM~-I~-An~RlLLTGTPLQNNL~ELiS 572 (941)
T KOG0389|consen 527 YVIYDEGHMLKNRT-SERYKHLMS-IN-ANFRLLLTGTPLQNNLKELIS 572 (941)
T ss_pred EEEecchhhhhccc-hHHHHHhcc-cc-ccceEEeeCCcccccHHHHHH
Confidence 99999999985543 223333333 22 4556777777 4666676665
No 117
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=97.17 E-value=0.0017 Score=59.39 Aligned_cols=84 Identities=17% Similarity=0.162 Sum_probs=66.0
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHH-----HHHHHh-cCCcCCC
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-----YDIMER-MDVLDFR 75 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l-----~~~l~~-~~~~~l~ 75 (183)
+-|++++..||.+=.+.+..+..++ ++++.++.++.+..+... ..+|||+-||+..+ .+.+.. ....-.+
T Consensus 129 VhVVTvNdYLA~RDae~m~~vy~~L-GLtvg~i~~~~~~~err~---aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR 204 (939)
T PRK12902 129 VHVVTVNDYLARRDAEWMGQVHRFL-GLSVGLIQQDMSPEERKK---NYACDITYATNSELGFDYLRDNMATDISEVVQR 204 (939)
T ss_pred eEEEeCCHHHHHhHHHHHHHHHHHh-CCeEEEECCCCChHHHHH---hcCCCeEEecCCcccccchhhhhcccccccccC
Confidence 5789999999999999999999998 999998877665544332 35899999999987 444432 1223457
Q ss_pred CceEEEEcccchhh
Q 030094 76 NLEILVLDEADRLL 89 (183)
Q Consensus 76 ~l~~lVvDEad~ll 89 (183)
.+.+.|+||+|.+|
T Consensus 205 ~~~faIVDEvDSIL 218 (939)
T PRK12902 205 PFNYCVIDEVDSIL 218 (939)
T ss_pred ccceEEEeccccee
Confidence 78899999999987
No 118
>PRK14873 primosome assembly protein PriA; Provisional
Probab=97.15 E-value=0.0034 Score=56.32 Aligned_cols=113 Identities=9% Similarity=0.168 Sum_probs=75.3
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
++|||+|...|+.|+.+.++...+ +-.+..+.++.+..+..+ .+..+.+.|+|||-..+. .-++++
T Consensus 190 ~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF--------aP~~~L 258 (665)
T PRK14873 190 GALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF--------APVEDL 258 (665)
T ss_pred eEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE--------eccCCC
Confidence 589999999999999998876542 255777887776555444 333566899999953221 236789
Q ss_pred eEEEEcccchh-hccc-----hHHHHHHHHHhCCCCCeEEEEeecCChHHHHHH
Q 030094 78 EILVLDEADRL-LDMG-----FQKQISYIISRLPKLRRTGLFSATQTEAVEELS 125 (183)
Q Consensus 78 ~~lVvDEad~l-l~~~-----~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~ 125 (183)
.++|+||=|.- .... +..++...... ..+..+++-|||.+-+....+
T Consensus 259 gLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~-~~~~~lvLgSaTPSles~~~~ 311 (665)
T PRK14873 259 GLVAIWDDGDDLLAEPRAPYPHAREVALLRAH-QHGCALLIGGHARTAEAQALV 311 (665)
T ss_pred CEEEEEcCCchhhcCCCCCCccHHHHHHHHHH-HcCCcEEEECCCCCHHHHHHH
Confidence 99988887643 2221 22333332222 357899999999997765543
No 119
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=97.12 E-value=0.00093 Score=60.87 Aligned_cols=113 Identities=15% Similarity=0.176 Sum_probs=71.9
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhc-CCcCCCCceEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM-DVLDFRNLEIL 80 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~-~~~~l~~l~~l 80 (183)
++.+.|.-.-++.-...+..+.-.. ++.+-..+|+....... +.-++-|||=++-..+++.. ..=++..++++
T Consensus 272 ~llilp~vsiv~Ek~~~l~~~~~~~-G~~ve~y~g~~~p~~~~-----k~~sv~i~tiEkanslin~lie~g~~~~~g~v 345 (1008)
T KOG0950|consen 272 VLLILPYVSIVQEKISALSPFSIDL-GFPVEEYAGRFPPEKRR-----KRESVAIATIEKANSLINSLIEQGRLDFLGMV 345 (1008)
T ss_pred eeEecceeehhHHHHhhhhhhcccc-CCcchhhcccCCCCCcc-----cceeeeeeehHhhHhHHHHHHhcCCccccCcE
Confidence 3444455444444444444444343 56665555554432221 23579999998866665431 12246778999
Q ss_pred EEcccchhhccchHHHHHHHHHhC-----CCCCeEEEEeecCChH
Q 030094 81 VLDEADRLLDMGFQKQISYIISRL-----PKLRRTGLFSATQTEA 120 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l-----~~~~Q~v~~SAT~~~~ 120 (183)
|+||.|.+.+.+-+..++.++..+ ....|+|.+|||+++.
T Consensus 346 vVdElhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~ 390 (1008)
T KOG0950|consen 346 VVDELHMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNN 390 (1008)
T ss_pred EEeeeeeeeccccchHHHHHHHHHHHhccccceeEeeeecccCCh
Confidence 999999999888777777776554 2235799999999865
No 120
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=97.11 E-value=0.0042 Score=55.85 Aligned_cols=115 Identities=18% Similarity=0.187 Sum_probs=69.5
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcch------------HHHHHHHHhcCCcEEEeCcHHHHHHHHhc
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEV------------KADVKKIEEEGANLLIGTPGRLYDIMERM 69 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~------------~~~~~~l~~~~~~IiV~TP~~l~~~l~~~ 69 (183)
||||||.--+ . +.++++..-.|.+++..++|..+. +..........-+|+|+|-..+.-. .
T Consensus 258 aLIVCP~Tii-~---qW~~E~~~w~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~- 330 (923)
T KOG0387|consen 258 ALIVCPATII-H---QWMKEFQTWWPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--G- 330 (923)
T ss_pred eEEEccHHHH-H---HHHHHHHHhCcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--C-
Confidence 7999996543 3 344445555678999999876552 1111111113457999997654332 1
Q ss_pred CCcCCCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeec-CChHHHHHHH
Q 030094 70 DVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT-QTEAVEELSK 126 (183)
Q Consensus 70 ~~~~l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT-~~~~v~~~~~ 126 (183)
..+.-....++|+||.|.+-+. ...+..-...++ ..+.+.+|.| +.+.+.++-+
T Consensus 331 d~l~~~~W~y~ILDEGH~IrNp--ns~islackki~-T~~RiILSGTPiQNnL~ELws 385 (923)
T KOG0387|consen 331 DDLLGILWDYVILDEGHRIRNP--NSKISLACKKIR-TVHRIILSGTPIQNNLTELWS 385 (923)
T ss_pred cccccccccEEEecCcccccCC--ccHHHHHHHhcc-ccceEEeeCccccchHHHHHH
Confidence 3455566789999999998653 344444456664 4555556666 5666666554
No 121
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.04 E-value=0.0065 Score=48.56 Aligned_cols=84 Identities=14% Similarity=0.226 Sum_probs=63.5
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHH-HHHhc---CCc--CCC
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYD-IMERM---DVL--DFR 75 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~-~l~~~---~~~--~l~ 75 (183)
+-|++.+..||.+=++.+..+...+ ++++....++.+.++..... .+||+-||...+.- +++.. +.- -..
T Consensus 121 V~vvT~NdyLA~RD~~~~~~~y~~L-Glsv~~~~~~~~~~~r~~~Y---~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r 196 (266)
T PF07517_consen 121 VHVVTSNDYLAKRDAEEMRPFYEFL-GLSVGIITSDMSSEERREAY---AADIVYGTNSEFGFDYLRDNLALSKNEQVQR 196 (266)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHT-T--EEEEETTTEHHHHHHHH---HSSEEEEEHHHHHHHHHHHTT-SSGGG--SS
T ss_pred cEEEeccHHHhhccHHHHHHHHHHh-hhccccCccccCHHHHHHHH---hCcccccccchhhHHHHHHHHhhccchhccC
Confidence 4588999999999999999999998 99999999988865544333 57999999998753 44431 111 147
Q ss_pred CceEEEEcccchhh
Q 030094 76 NLEILVLDEADRLL 89 (183)
Q Consensus 76 ~l~~lVvDEad~ll 89 (183)
...++|+||+|.++
T Consensus 197 ~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 197 GFDFAIVDEVDSIL 210 (266)
T ss_dssp SSSEEEECTHHHHT
T ss_pred CCCEEEEeccceEE
Confidence 88899999999987
No 122
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=96.95 E-value=0.0025 Score=58.10 Aligned_cols=84 Identities=17% Similarity=0.140 Sum_probs=64.7
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHH-HHHHhc-----CCcCCC
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLY-DIMERM-----DVLDFR 75 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~-~~l~~~-----~~~~l~ 75 (183)
+-|++++..||.+-++.+..+.+++ ++++.++.++.+..+.... ..+||.-||...+- ++++.+ ...-.+
T Consensus 120 VhVvT~NdyLA~RD~e~m~pvy~~L-GLsvg~i~~~~~~~err~a---Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r 195 (870)
T CHL00122 120 VHIVTVNDYLAKRDQEWMGQIYRFL-GLTVGLIQEGMSSEERKKN---YLKDITYVTNSELGFDYLRDNMALSLSDVVQR 195 (870)
T ss_pred eEEEeCCHHHHHHHHHHHHHHHHHc-CCceeeeCCCCChHHHHHh---cCCCCEecCCccccccchhhccCcChHHhhcc
Confidence 5789999999999999999999998 9999998887776554433 46899999997543 333320 111246
Q ss_pred CceEEEEcccchhh
Q 030094 76 NLEILVLDEADRLL 89 (183)
Q Consensus 76 ~l~~lVvDEad~ll 89 (183)
.+.+.|+||+|.+|
T Consensus 196 ~~~faIVDEvDSiL 209 (870)
T CHL00122 196 PFNYCIIDEVDSIL 209 (870)
T ss_pred ccceeeeecchhhe
Confidence 78899999999987
No 123
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=96.94 E-value=0.0083 Score=55.48 Aligned_cols=39 Identities=28% Similarity=0.256 Sum_probs=28.5
Q ss_pred CCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEcccchhhc
Q 030094 51 GANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLD 90 (183)
Q Consensus 51 ~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEad~ll~ 90 (183)
.+||+|++..-|...+.....+.+ .-+++|+||||+|.+
T Consensus 416 ~AdivItNHa~L~~~~~~~~~ilp-~~~~lIiDEAH~L~d 454 (850)
T TIGR01407 416 QAQILITNHAYLITRLVDNPELFP-SFRDLIIDEAHHLPD 454 (850)
T ss_pred cCCEEEecHHHHHHHhhcccccCC-CCCEEEEECcchHHH
Confidence 479999999888777644233333 337999999999964
No 124
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=96.94 E-value=0.013 Score=53.05 Aligned_cols=112 Identities=19% Similarity=0.241 Sum_probs=77.0
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHH---HHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~---l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
+||||||--.|--|+.+.++... +.+++.+.++-+..+.... ...+...|+|||=..+.. -++++
T Consensus 247 qvLvLVPEI~Ltpq~~~rf~~rF----g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~--------Pf~~L 314 (730)
T COG1198 247 QVLVLVPEIALTPQLLARFKARF----GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFL--------PFKNL 314 (730)
T ss_pred EEEEEeccccchHHHHHHHHHHh----CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcC--------chhhc
Confidence 58999999999999988777764 4677778777665544443 335779999999532222 36779
Q ss_pred eEEEEcccchhh-c--cc---hHHHHHHHHHhCCCCCeEEEEeecCChHHHHHH
Q 030094 78 EILVLDEADRLL-D--MG---FQKQISYIISRLPKLRRTGLFSATQTEAVEELS 125 (183)
Q Consensus 78 ~~lVvDEad~ll-~--~~---~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~ 125 (183)
.++|+||=|--- . .+ +..++.-... -..++.+++-|||.+-+....+
T Consensus 315 GLIIvDEEHD~sYKq~~~prYhARdvA~~Ra-~~~~~pvvLgSATPSLES~~~~ 367 (730)
T COG1198 315 GLIIVDEEHDSSYKQEDGPRYHARDVAVLRA-KKENAPVVLGSATPSLESYANA 367 (730)
T ss_pred cEEEEeccccccccCCcCCCcCHHHHHHHHH-HHhCCCEEEecCCCCHHHHHhh
Confidence 999999988742 1 11 2344433333 3368999999999886654444
No 125
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=96.92 E-value=0.027 Score=51.80 Aligned_cols=83 Identities=17% Similarity=0.167 Sum_probs=58.8
Q ss_pred cCCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEcccchh-hccch-HHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHh
Q 030094 50 EGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRL-LDMGF-QKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (183)
Q Consensus 50 ~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEad~l-l~~~~-~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~ 127 (183)
....|-+-|.|.|+..+.+ ...++.+.++|+||||.= ++.++ ...+..++...+.+-.++.+|||+..+ -...
T Consensus 138 ~~Trik~mTdGiLlrei~~--D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld~~---rfs~ 212 (845)
T COG1643 138 PRTRIKVMTDGILLREIQN--DPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDAE---RFSA 212 (845)
T ss_pred CCceeEEeccHHHHHHHhh--CcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccCHH---HHHH
Confidence 3567999999999999976 456899999999999973 23333 234455566666678899999999943 3445
Q ss_pred hCCCCeEEEE
Q 030094 128 GLRNPVRVEV 137 (183)
Q Consensus 128 ~~~~~~~i~~ 137 (183)
|+.++-.+.+
T Consensus 213 ~f~~apvi~i 222 (845)
T COG1643 213 YFGNAPVIEI 222 (845)
T ss_pred HcCCCCEEEe
Confidence 5665444433
No 126
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=96.90 E-value=0.017 Score=48.25 Aligned_cols=122 Identities=18% Similarity=0.237 Sum_probs=82.6
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHH--hcCCcEEEeCcHHHHH---HHHh-cCC
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIE--EEGANLLIGTPGRLYD---IMER-MDV 71 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~--~~~~~IiV~TP~~l~~---~l~~-~~~ 71 (183)
++|++||--.|.....-.++.+ ++....+....+.++..+ .+. +....++-.||+++.. +|.+ .+.
T Consensus 136 ~alvi~plislmedqil~lkql-----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka 210 (695)
T KOG0353|consen 136 FALVICPLISLMEDQILQLKQL-----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKA 210 (695)
T ss_pred ceEeechhHHHHHHHHHHHHHh-----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHH
Confidence 5899999999998776777777 455555555555443332 111 2346789999999854 2322 135
Q ss_pred cCCCCceEEEEcccchhhccc--hHHHHH--HHHHhCCCCCeEEEEeecCChHHHHHHHh
Q 030094 72 LDFRNLEILVLDEADRLLDMG--FQKQIS--YIISRLPKLRRTGLFSATQTEAVEELSKA 127 (183)
Q Consensus 72 ~~l~~l~~lVvDEad~ll~~~--~~~~l~--~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~ 127 (183)
+....++.+.+||+|....+| |.++.. .++++--+..-++.++||-++.+..=++.
T Consensus 211 ~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~ 270 (695)
T KOG0353|consen 211 LEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKD 270 (695)
T ss_pred hhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHH
Confidence 677889999999999998765 555443 34444446778999999998887665543
No 127
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=96.84 E-value=0.003 Score=57.02 Aligned_cols=103 Identities=17% Similarity=0.225 Sum_probs=69.1
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhc----CCcCCCCc
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM----DVLDFRNL 77 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~----~~~~l~~l 77 (183)
+|+|+-.+.|+.|.+..+..+. |.-.......+... ...++|.|+|-.++...+... ..+.+...
T Consensus 218 VLFLaDR~~Lv~QA~~af~~~~---P~~~~~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~F 286 (875)
T COG4096 218 VLFLADRNALVDQAYGAFEDFL---PFGTKMNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFF 286 (875)
T ss_pred eeEEechHHHHHHHHHHHHHhC---CCccceeeeecccC--------CcceeEEEeehHHHHhhhhccccccccCCCCce
Confidence 5899999999999999877764 44444333332221 124799999999999888762 24567778
Q ss_pred eEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHH
Q 030094 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121 (183)
Q Consensus 78 ~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v 121 (183)
.++|+||||+-. ...-+.|+..+..-+|.+ +||..+.+
T Consensus 287 DlIvIDEaHRgi----~~~~~~I~dYFdA~~~gL--TATP~~~~ 324 (875)
T COG4096 287 DLIVIDEAHRGI----YSEWSSILDYFDAATQGL--TATPKETI 324 (875)
T ss_pred eEEEechhhhhH----HhhhHHHHHHHHHHHHhh--ccCccccc
Confidence 999999999953 334446666663323322 66666543
No 128
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=96.84 E-value=0.023 Score=52.49 Aligned_cols=122 Identities=15% Similarity=0.089 Sum_probs=78.4
Q ss_pred EeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEcc
Q 030094 5 ISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDE 84 (183)
Q Consensus 5 l~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDE 84 (183)
=-|-|--|..+++.+..=.....+-.|..-++..+.. .....++.||-|.|++.+.. .-.+.++.++|+||
T Consensus 225 TQPRRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~~~~-------s~~t~L~fcTtGvLLr~L~~--~~~l~~vthiivDE 295 (924)
T KOG0920|consen 225 TQPRRISAISVAERVAKERGESLGEEVGYQVRLESKR-------SRETRLLFCTTGVLLRRLQS--DPTLSGVTHIIVDE 295 (924)
T ss_pred cCCchHHHHHHHHHHHHHhccccCCeeeEEEeeeccc-------CCceeEEEecHHHHHHHhcc--CcccccCceeeeee
Confidence 3477777777776665543222233344333333221 12367999999999999875 45688999999999
Q ss_pred cchhh-ccchHH-HHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEcc
Q 030094 85 ADRLL-DMGFQK-QISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRA 139 (183)
Q Consensus 85 ad~ll-~~~~~~-~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~ 139 (183)
+|.=- +.+|.- .++.++.. .+.-+++++|||+. .+..+.|+..+-.|.+..
T Consensus 296 VHER~i~~DflLi~lk~lL~~-~p~LkvILMSAT~d---ae~fs~YF~~~pvi~i~g 348 (924)
T KOG0920|consen 296 VHERSINTDFLLILLKDLLPR-NPDLKVILMSATLD---AELFSDYFGGCPVITIPG 348 (924)
T ss_pred EEEccCCcccHHHHHHHHhhh-CCCceEEEeeeecc---hHHHHHHhCCCceEeecC
Confidence 99742 233433 33333433 36789999999999 455666666666666654
No 129
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=96.84 E-value=0.018 Score=47.52 Aligned_cols=102 Identities=22% Similarity=0.309 Sum_probs=66.6
Q ss_pred EEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEEE
Q 030094 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVL 82 (183)
Q Consensus 3 lIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVv 82 (183)
.|-.|--+.+..++..++. .+++..+.+++|+++-. ....++|+|-..|++.-+ .+ +++++
T Consensus 148 ciASPRvDVclEl~~Rlk~---aF~~~~I~~Lyg~S~~~--------fr~plvVaTtHQLlrFk~---aF-----D~liI 208 (441)
T COG4098 148 CIASPRVDVCLELYPRLKQ---AFSNCDIDLLYGDSDSY--------FRAPLVVATTHQLLRFKQ---AF-----DLLII 208 (441)
T ss_pred EEecCcccchHHHHHHHHH---hhccCCeeeEecCCchh--------ccccEEEEehHHHHHHHh---hc-----cEEEE
Confidence 3556777777766654444 45568899999977631 236789999887776643 34 48999
Q ss_pred cccchhhccchHHHHHHHH-HhCCCCCeEEEEeecCChHHHHH
Q 030094 83 DEADRLLDMGFQKQISYII-SRLPKLRRTGLFSATQTEAVEEL 124 (183)
Q Consensus 83 DEad~ll~~~~~~~l~~i~-~~l~~~~Q~v~~SAT~~~~v~~~ 124 (183)
||+|..== .-...+.... +...+..-++++|||.+.+.+.=
T Consensus 209 DEVDAFP~-~~d~~L~~Av~~ark~~g~~IylTATp~k~l~r~ 250 (441)
T COG4098 209 DEVDAFPF-SDDQSLQYAVKKARKKEGATIYLTATPTKKLERK 250 (441)
T ss_pred eccccccc-cCCHHHHHHHHHhhcccCceEEEecCChHHHHHH
Confidence 99999621 1122333333 33345678999999999776543
No 130
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=96.60 E-value=0.0071 Score=55.02 Aligned_cols=136 Identities=16% Similarity=0.127 Sum_probs=81.6
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH-------------HHHhcCCcEEEeCcHHHHHHHHh
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK-------------KIEEEGANLLIGTPGRLYDIMER 68 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~-------------~l~~~~~~IiV~TP~~l~~~l~~ 68 (183)
.+.+.|+|.+..++++.++...... .+......|......... ........+.++||..+......
T Consensus 249 ~i~vlP~~t~ie~~~~r~~~~~~~~-~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~ 327 (733)
T COG1203 249 VIYVLPFRTIIEDMYRRAKEIFGLF-SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVK 327 (733)
T ss_pred EEEEccHHHHHHHHHHHHHhhhccc-ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhcc
Confidence 4678999999999999999876543 222221222221110000 01112245667777665553222
Q ss_pred cCCcC-CC--CceEEEEcccchhhccchHHHHHHHHHhCC-CCCeEEEEeecCChHHHHHHHhhCCCCeEEEEc
Q 030094 69 MDVLD-FR--NLEILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAVEELSKAGLRNPVRVEVR 138 (183)
Q Consensus 69 ~~~~~-l~--~l~~lVvDEad~ll~~~~~~~l~~i~~~l~-~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~ 138 (183)
...+. +. .-..+|+||+|.+-+......+..++..+. .+.-++++|||+|+..++.....+.+...+...
T Consensus 328 ~~~~~~~~~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~ 401 (733)
T COG1203 328 GFKFEFLALLLTSLVILDEVHLYADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVEN 401 (733)
T ss_pred ccchHHHHHHHhhchhhccHHhhcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceecc
Confidence 11111 11 225789999999876534444444444443 367899999999999999999888777666554
No 131
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=96.50 E-value=0.0095 Score=55.90 Aligned_cols=108 Identities=17% Similarity=0.238 Sum_probs=66.7
Q ss_pred EEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH--HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK--KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 3 lIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~--~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
||+|||.-+-. ....+++. +|++++...+|...-....+ +.+.+..||.|++-..+..-+ ..|.-++.+++
T Consensus 669 LIVVpTsviLn-WEMElKRw---cPglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~---~AFkrkrWqyL 741 (1958)
T KOG0391|consen 669 LIVVPTSVILN-WEMELKRW---CPGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDL---TAFKRKRWQYL 741 (1958)
T ss_pred eEEeechhhhh-hhHHHhhh---CCcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHH---HHHHhhcccee
Confidence 79999976543 33445554 57899999998655333322 222345689999886665544 34666889999
Q ss_pred EEcccchhhccchHHHHHHHHHhCCCCCeEEEEeec-CChH
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT-QTEA 120 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT-~~~~ 120 (183)
|+|||+.+= +|...-...+-.++..+ .++++.| +.+.
T Consensus 742 vLDEaqnIK--nfksqrWQAllnfnsqr-RLLLtgTPLqNs 779 (1958)
T KOG0391|consen 742 VLDEAQNIK--NFKSQRWQALLNFNSQR-RLLLTGTPLQNS 779 (1958)
T ss_pred ehhhhhhhc--chhHHHHHHHhccchhh-eeeecCCchhhH
Confidence 999999984 34443333333443344 4444555 4444
No 132
>PRK10689 transcription-repair coupling factor; Provisional
Probab=96.41 E-value=0.057 Score=51.51 Aligned_cols=78 Identities=14% Similarity=0.221 Sum_probs=61.0
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHH---HHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~---~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
+++|++|+++-+..+++.+.+. .|+.++..+.|+.+.++.. ....++..+|+|||- .+. .++|+.++
T Consensus 811 qv~vf~n~i~~ie~la~~L~~~---~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd-----Iie--rGIDIP~v 880 (1147)
T PRK10689 811 QVYYLYNDVENIQKAAERLAEL---VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIE--TGIDIPTA 880 (1147)
T ss_pred eEEEEECCHHHHHHHHHHHHHh---CCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc-----hhh--cccccccC
Confidence 5789999999888777766665 4678888999987655433 344567899999994 565 48999999
Q ss_pred eEEEEcccchh
Q 030094 78 EILVLDEADRL 88 (183)
Q Consensus 78 ~~lVvDEad~l 88 (183)
.++|++.+|++
T Consensus 881 ~~VIi~~ad~f 891 (1147)
T PRK10689 881 NTIIIERADHF 891 (1147)
T ss_pred CEEEEecCCCC
Confidence 99999999874
No 133
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=96.37 E-value=0.015 Score=53.43 Aligned_cols=89 Identities=13% Similarity=0.051 Sum_probs=72.1
Q ss_pred CCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCC------hHHHHH
Q 030094 51 GANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT------EAVEEL 124 (183)
Q Consensus 51 ~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~------~~v~~~ 124 (183)
.-.|+++||..|..-+-. +.++++.+..+|+||||++.+......+-++.+.-++..-+.+|||... .++...
T Consensus 7 ~ggi~~~T~rIl~~DlL~-~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~v 85 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLT-GIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETK 85 (814)
T ss_pred cCCEEEEechhhHhHHhc-CCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcccccchHHHHHH
Confidence 357999999998766656 7899999999999999999988778888888888888888999999976 457777
Q ss_pred HHhhCCCCeEEEEccC
Q 030094 125 SKAGLRNPVRVEVRAE 140 (183)
Q Consensus 125 ~~~~~~~~~~i~~~~~ 140 (183)
++...-.-+.+.-...
T Consensus 86 mk~L~i~~v~l~prf~ 101 (814)
T TIGR00596 86 MRNLFLRHVYLWPRFH 101 (814)
T ss_pred HHHhCcCeEEEeCCCc
Confidence 7776655566654433
No 134
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.27 E-value=0.0058 Score=54.39 Aligned_cols=126 Identities=17% Similarity=0.158 Sum_probs=72.0
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHH----HHHhcCC-cCCCC
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYD----IMERMDV-LDFRN 76 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~----~l~~~~~-~~l~~ 76 (183)
.||+||-+- ..|.+..+.+-.... -++|...+|....+...+.+. ..||+|+|..-+.. -.+..+. --+-.
T Consensus 386 TLII~PaSl-i~qW~~Ev~~rl~~n-~LsV~~~HG~n~r~i~~~~L~--~YDvViTTY~lva~~~~~e~~~~~~~spL~~ 461 (901)
T KOG4439|consen 386 TLIICPASL-IHQWEAEVARRLEQN-ALSVYLYHGPNKREISAKELR--KYDVVITTYNLVANKPDDELEEGKNSSPLAR 461 (901)
T ss_pred eEEeCcHHH-HHHHHHHHHHHHhhc-ceEEEEecCCccccCCHHHHh--hcceEEEeeeccccCCchhhhcccCccHHHH
Confidence 489999654 455555444433343 689999998876655566663 57999999855444 1111011 11333
Q ss_pred c--eEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeec-CChHHHHHHH--hhCCCCeE
Q 030094 77 L--EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT-QTEAVEELSK--AGLRNPVR 134 (183)
Q Consensus 77 l--~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT-~~~~v~~~~~--~~~~~~~~ 134 (183)
+ .-+|+||||.+-+. ..+-...+..+...++ +++|+| +.+....+.. .|++.|-+
T Consensus 462 I~W~RVILDEAH~IrN~--~tq~S~AVC~L~a~~R-WclTGTPiqNn~~DvysLlrFLr~~pF 521 (901)
T KOG4439|consen 462 IAWSRVILDEAHNIRNS--NTQCSKAVCKLSAKSR-WCLTGTPIQNNLWDVYSLLRFLRCPPF 521 (901)
T ss_pred hhHHHhhhhhhhhhccc--chhHHHHHHHHhhcce-eecccCccccchhHHHHHHHHhcCCCc
Confidence 3 35899999998543 3333344455544444 445565 4555455444 35555543
No 135
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=96.23 E-value=0.026 Score=52.65 Aligned_cols=78 Identities=14% Similarity=0.244 Sum_probs=61.9
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHH---HHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~---~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
+++|+||+.+-+..+++.++++ .|+.++..+.|+.+.++.. ....++..+|+|||- .+. .++|..++
T Consensus 662 qv~if~n~i~~~e~l~~~L~~~---~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~-----iie--~GIDIp~v 731 (926)
T TIGR00580 662 QVFYVHNRIESIEKLATQLREL---VPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT-----IIE--TGIDIPNA 731 (926)
T ss_pred eEEEEECCcHHHHHHHHHHHHh---CCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh--cccccccC
Confidence 5789999999988888777765 3578999999987654433 344567899999995 565 48999999
Q ss_pred eEEEEcccchh
Q 030094 78 EILVLDEADRL 88 (183)
Q Consensus 78 ~~lVvDEad~l 88 (183)
.++|++.+|+.
T Consensus 732 ~~VIi~~a~~~ 742 (926)
T TIGR00580 732 NTIIIERADKF 742 (926)
T ss_pred CEEEEecCCCC
Confidence 99999999874
No 136
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.10 E-value=0.034 Score=52.45 Aligned_cols=119 Identities=18% Similarity=0.212 Sum_probs=75.1
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
+||+||+- |+--...++.+ ++|.+++...+|+...+...+.- -++.+|+|++-..+.+-+.. +.-...-++|
T Consensus 1034 SLIVCPsT-LtGHW~~E~~k---f~pfL~v~~yvg~p~~r~~lR~q-~~~~~iiVtSYDv~RnD~d~---l~~~~wNYcV 1105 (1549)
T KOG0392|consen 1034 SLIVCPST-LTGHWKSEVKK---FFPFLKVLQYVGPPAERRELRDQ-YKNANIIVTSYDVVRNDVDY---LIKIDWNYCV 1105 (1549)
T ss_pred eEEECCch-hhhHHHHHHHH---hcchhhhhhhcCChHHHHHHHhh-ccccceEEeeHHHHHHHHHH---HHhcccceEE
Confidence 68999964 45544444444 45667888888877655554433 24689999998776532221 1112344899
Q ss_pred EcccchhhccchHHHHHHHHHhCCCCCeEEEEeecC-ChHHH---HHHHhhCCC
Q 030094 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ-TEAVE---ELSKAGLRN 131 (183)
Q Consensus 82 vDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~-~~~v~---~~~~~~~~~ 131 (183)
+||-|.+= +-...+...++.+..+++.|+ |.|. .+.+. .+....|+.
T Consensus 1106 LDEGHVik--N~ktkl~kavkqL~a~hRLIL-SGTPIQNnvleLWSLFdFLMPG 1156 (1549)
T KOG0392|consen 1106 LDEGHVIK--NSKTKLTKAVKQLRANHRLIL-SGTPIQNNVLELWSLFDFLMPG 1156 (1549)
T ss_pred ecCcceec--chHHHHHHHHHHHhhcceEEe-eCCCcccCHHHHHHHHHHhccc
Confidence 99999984 346777777888866666665 6664 45444 445555553
No 137
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=96.05 E-value=0.06 Score=50.53 Aligned_cols=108 Identities=13% Similarity=0.150 Sum_probs=71.1
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce-EE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE-IL 80 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~-~l 80 (183)
+++||=.++|-.|+.+.+..+..... ... ...+..+-.+.+.+..-.|+|+|=+++.............+-. .+
T Consensus 306 v~fvvDR~dLd~Q~~~~f~~~~~~~~--~~~---~~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivv 380 (962)
T COG0610 306 VLFVVDRKDLDDQTSDEFQSFGKVAF--NDP---KAESTSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVV 380 (962)
T ss_pred EEEEechHHHHHHHHHHHHHHHHhhh--hcc---cccCHHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEE
Confidence 58899999999999999999975432 111 3344444444453333489999999999988762122233333 67
Q ss_pred EEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCC
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~ 118 (183)
|+||||+- .++..-..+-..+ ++...++|+.|.-
T Consensus 381 I~DEaHRS---Q~G~~~~~~~~~~-~~a~~~gFTGTPi 414 (962)
T COG0610 381 IIDEAHRS---QYGELAKLLKKAL-KKAIFIGFTGTPI 414 (962)
T ss_pred EEechhhc---cccHHHHHHHHHh-ccceEEEeeCCcc
Confidence 99999995 2333333334444 4588999999964
No 138
>KOG3089 consensus Predicted DEAD-box-containing helicase [General function prediction only]
Probab=96.00 E-value=0.014 Score=45.04 Aligned_cols=44 Identities=30% Similarity=0.565 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEccc
Q 030094 41 KADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEA 85 (183)
Q Consensus 41 ~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEa 85 (183)
+++.........++-||||+|+.++++. +++..+.++++|+|=.
T Consensus 186 ~~~~k~~k~~~v~~gIgTp~Ri~~lv~~-~~f~~~~lk~iIlD~s 229 (271)
T KOG3089|consen 186 QAQVKLLKKRVVHLGIGTPGRIKELVKQ-GGFNLSPLKFIILDWS 229 (271)
T ss_pred HHHHHHHhhcceeEeecCcHHHHHHHHh-cCCCCCcceeEEeecc
Confidence 4555555566789999999999999998 7899999999998853
No 139
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=95.73 E-value=0.38 Score=42.89 Aligned_cols=83 Identities=16% Similarity=0.117 Sum_probs=53.6
Q ss_pred CCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEcccchhh-ccc-hHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhh
Q 030094 51 GANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLL-DMG-FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAG 128 (183)
Q Consensus 51 ~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEad~ll-~~~-~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~ 128 (183)
...|..-|-|.|++-+-. .-.++.-.++|+||||.=- ..+ ....++.+++.- ++-.++++|||+. .+..+.|
T Consensus 140 ~TrikymTDG~LLRE~l~--Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R-~~LklIimSATld---a~kfS~y 213 (674)
T KOG0922|consen 140 DTRIKYMTDGMLLREILK--DPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKR-PDLKLIIMSATLD---AEKFSEY 213 (674)
T ss_pred ceeEEEecchHHHHHHhc--CCccccccEEEEechhhhhhHHHHHHHHHHHHHhcC-CCceEEEEeeeec---HHHHHHH
Confidence 457899999999887754 4567889999999999721 111 122333333332 3458999999999 3345566
Q ss_pred CCCCeEEEEcc
Q 030094 129 LRNPVRVEVRA 139 (183)
Q Consensus 129 ~~~~~~i~~~~ 139 (183)
+.+.-.+.+..
T Consensus 214 F~~a~i~~i~G 224 (674)
T KOG0922|consen 214 FNNAPILTIPG 224 (674)
T ss_pred hcCCceEeecC
Confidence 66644444433
No 140
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=95.55 E-value=0.34 Score=43.71 Aligned_cols=114 Identities=11% Similarity=0.267 Sum_probs=73.8
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHH---HHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
++|.|+|++.|..+.+.+... ++.+..+.|+....+. ...+..+..+|+||| ..+. .++++..++
T Consensus 445 vLIf~~tk~~ae~L~~~L~~~-----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L~--rGfDiP~v~ 512 (655)
T TIGR00631 445 VLVTTLTKKMAEDLTDYLKEL-----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLLR--EGLDLPEVS 512 (655)
T ss_pred EEEEECCHHHHHHHHHHHhhh-----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----Chhc--CCeeeCCCc
Confidence 689999999999998887765 5677777776554333 334445779999999 3554 589999999
Q ss_pred EEEEcccchhhccchHHHHHHHHHhCCC--CCeEEEEeecCChHHHHHHHh
Q 030094 79 ILVLDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSATQTEAVEELSKA 127 (183)
Q Consensus 79 ~lVvDEad~ll~~~~~~~l~~i~~~l~~--~~Q~v~~SAT~~~~v~~~~~~ 127 (183)
++|+-++|..--......+-+...+..+ ....+++--..+..+...+..
T Consensus 513 lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 513 LVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred EEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHHHHHHHHH
Confidence 9999888884211112222233333222 335666666676555544443
No 141
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=95.50 E-value=0.022 Score=53.17 Aligned_cols=72 Identities=22% Similarity=0.062 Sum_probs=46.2
Q ss_pred CCcEEEeCcHHHHHHHHhc--CCcCCC--C--ceEEEEcccchhhccchHHHHHHHHHhCC-CCCeEEEEeecCChHHHH
Q 030094 51 GANLLIGTPGRLYDIMERM--DVLDFR--N--LEILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAVEE 123 (183)
Q Consensus 51 ~~~IiV~TP~~l~~~l~~~--~~~~l~--~--l~~lVvDEad~ll~~~~~~~l~~i~~~l~-~~~Q~v~~SAT~~~~v~~ 123 (183)
...++|||+.-++...... +...+. . =+.+|+||+|..-. .....+..+++-.. -...++++|||+|+.+..
T Consensus 562 ~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~-~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~ 640 (1110)
T TIGR02562 562 AAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEP-EDLPALLRLVQLAGLLGSRVLLSSATLPPALVK 640 (1110)
T ss_pred cCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCH-HHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHH
Confidence 3689999999988876321 111111 1 15799999999632 22334444444222 257889999999998654
No 142
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=95.37 E-value=0.09 Score=44.61 Aligned_cols=71 Identities=15% Similarity=0.212 Sum_probs=53.7
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
.+||.|+|++-|..+++.+... +.++..+.|+...+++.. ....+.++|+|||. .+. .++|+.++
T Consensus 257 ~~lVF~~t~~~~~~l~~~L~~~-----g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-----v~~--rGiDip~v 324 (423)
T PRK04837 257 RAIIFANTKHRCEEIWGHLAAD-----GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD-----VAA--RGLHIPAV 324 (423)
T ss_pred eEEEEECCHHHHHHHHHHHHhC-----CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec-----hhh--cCCCcccc
Confidence 3799999999999888877653 678888898876544433 44457899999994 454 57999999
Q ss_pred eEEEEc
Q 030094 78 EILVLD 83 (183)
Q Consensus 78 ~~lVvD 83 (183)
+++|.-
T Consensus 325 ~~VI~~ 330 (423)
T PRK04837 325 THVFNY 330 (423)
T ss_pred CEEEEe
Confidence 988743
No 143
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=95.33 E-value=0.15 Score=45.31 Aligned_cols=73 Identities=12% Similarity=0.200 Sum_probs=55.5
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
.+||.|+|++.|.++++.+.+. ++++..+.|+.+..+... ...++..+|+|+|. .+. .++|+.++
T Consensus 259 k~LVF~nt~~~ae~l~~~L~~~-----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd-----v~a--rGIDip~V 326 (572)
T PRK04537 259 RTMVFVNTKAFVERVARTLERH-----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD-----VAA--RGLHIDGV 326 (572)
T ss_pred cEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh-----hhh--cCCCccCC
Confidence 3799999999999998877654 578889998876544433 34456789999994 554 47999999
Q ss_pred eEEEEccc
Q 030094 78 EILVLDEA 85 (183)
Q Consensus 78 ~~lVvDEa 85 (183)
.++|.-+.
T Consensus 327 ~~VInyd~ 334 (572)
T PRK04537 327 KYVYNYDL 334 (572)
T ss_pred CEEEEcCC
Confidence 98886443
No 144
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.26 E-value=0.37 Score=43.24 Aligned_cols=81 Identities=20% Similarity=0.358 Sum_probs=55.4
Q ss_pred CEEEEeCcHHHH-----HHHHHHHHHhhhhCCCceEEEEEcCcchHHHH---HHHHhcCCcEEEeCcHHHHHHHHhcCCc
Q 030094 1 MGMIISPTRELS-----SQIYHVAQPFISTLPDVKSVLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVL 72 (183)
Q Consensus 1 ~alIl~PtreLa-----~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~---~~l~~~~~~IiV~TP~~l~~~l~~~~~~ 72 (183)
+++|+||+.+-. ....+.+..+...+++.++..+.|+.+.++.. +....+..+|+|||. .+. .++
T Consensus 450 q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----vie--~Gv 522 (630)
T TIGR00643 450 QAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT-----VIE--VGV 522 (630)
T ss_pred cEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----eee--cCc
Confidence 578899976421 22223334444444688999999987654443 344456799999995 444 589
Q ss_pred CCCCceEEEEcccchh
Q 030094 73 DFRNLEILVLDEADRL 88 (183)
Q Consensus 73 ~l~~l~~lVvDEad~l 88 (183)
|+.++.++|+..++..
T Consensus 523 DiP~v~~VIi~~~~r~ 538 (630)
T TIGR00643 523 DVPNATVMVIEDAERF 538 (630)
T ss_pred ccCCCcEEEEeCCCcC
Confidence 9999999999888874
No 145
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.21 E-value=0.39 Score=43.51 Aligned_cols=81 Identities=17% Similarity=0.333 Sum_probs=55.6
Q ss_pred CEEEEeCcHHH-----HHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCc
Q 030094 1 MGMIISPTREL-----SSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVL 72 (183)
Q Consensus 1 ~alIl~PtreL-----a~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~ 72 (183)
+++|+||+.+- .....+.+..+...+++.++..+.|+.+.++... ...++..+|+|||. .+. .++
T Consensus 473 q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----vie--~Gi 545 (681)
T PRK10917 473 QAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATT-----VIE--VGV 545 (681)
T ss_pred cEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----cee--eCc
Confidence 57899996431 1122334444544555688999999876544433 34456789999995 454 479
Q ss_pred CCCCceEEEEcccchh
Q 030094 73 DFRNLEILVLDEADRL 88 (183)
Q Consensus 73 ~l~~l~~lVvDEad~l 88 (183)
|..++.++|+..+++.
T Consensus 546 Dip~v~~VIi~~~~r~ 561 (681)
T PRK10917 546 DVPNATVMVIENAERF 561 (681)
T ss_pred ccCCCcEEEEeCCCCC
Confidence 9999999999999874
No 146
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=95.05 E-value=0.59 Score=42.85 Aligned_cols=123 Identities=12% Similarity=0.123 Sum_probs=77.3
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
+|++...+.|+.+....++.- +++++....-.++.... ....+-++..-+.|.++- .-.+++.+++|
T Consensus 81 VLvVShRrSL~~sL~~rf~~~--~l~gFv~Y~d~~~~~i~-------~~~~~rLivqIdSL~R~~----~~~l~~yDvVI 147 (824)
T PF02399_consen 81 VLVVSHRRSLTKSLAERFKKA--GLSGFVNYLDSDDYIID-------GRPYDRLIVQIDSLHRLD----GSLLDRYDVVI 147 (824)
T ss_pred EEEEEhHHHHHHHHHHHHhhc--CCCcceeeecccccccc-------ccccCeEEEEehhhhhcc----cccccccCEEE
Confidence 578889999999888766653 22344443333322211 123466666666665542 23466788999
Q ss_pred EcccchhhccchHHHHHH-------HHHhCCCCCeEEEEeecCChHHHHHHHhhCCC-CeEEEE
Q 030094 82 LDEADRLLDMGFQKQISY-------IISRLPKLRRTGLFSATQTEAVEELSKAGLRN-PVRVEV 137 (183)
Q Consensus 82 vDEad~ll~~~~~~~l~~-------i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~-~~~i~~ 137 (183)
+||+...++.-|.+.|++ +...+.+...+|++-|++++..-+|+....++ ++.+.+
T Consensus 148 IDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdFl~~~Rp~~~i~vI~ 211 (824)
T PF02399_consen 148 IDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDFLASCRPDENIHVIV 211 (824)
T ss_pred EehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHHHHHhCCCCcEEEEE
Confidence 999999987533222222 22333456789999999999999999987653 334433
No 147
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=94.84 E-value=0.18 Score=44.17 Aligned_cols=69 Identities=14% Similarity=0.236 Sum_probs=54.2
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
.+||.|.|+..|..++..+.+. ++++..++|+.+..+..+ ...++..+|+|||- ... .++|..++
T Consensus 275 ~~IVF~~tk~~~~~l~~~l~~~-----g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTD-----vaa--RGiDi~~v 342 (513)
T COG0513 275 RVIVFVRTKRLVEELAESLRKR-----GFKVAALHGDLPQEERDRALEKFKDGELRVLVATD-----VAA--RGLDIPDV 342 (513)
T ss_pred eEEEEeCcHHHHHHHHHHHHHC-----CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEec-----hhh--ccCCcccc
Confidence 3899999999999987766665 688999999987554444 44567899999994 443 58999999
Q ss_pred eEEE
Q 030094 78 EILV 81 (183)
Q Consensus 78 ~~lV 81 (183)
.++|
T Consensus 343 ~~Vi 346 (513)
T COG0513 343 SHVI 346 (513)
T ss_pred ceeE
Confidence 9886
No 148
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.78 E-value=0.19 Score=43.39 Aligned_cols=73 Identities=16% Similarity=0.274 Sum_probs=55.4
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||.|+|+.-|.++++.+.+. ++++..+.|+.+.++... ....+.++|+|||- .+. .++|+.+++
T Consensus 229 ~IIF~~s~~~~e~la~~L~~~-----g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~-----~~~--~GID~p~V~ 296 (470)
T TIGR00614 229 GIIYCPSRKKSEQVTASLQNL-----GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATV-----AFG--MGINKPDVR 296 (470)
T ss_pred eEEEECcHHHHHHHHHHHHhc-----CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEec-----hhh--ccCCcccce
Confidence 589999999999998887764 677888888877554433 34457899999995 343 579999999
Q ss_pred EEEEcccc
Q 030094 79 ILVLDEAD 86 (183)
Q Consensus 79 ~lVvDEad 86 (183)
++|.-..-
T Consensus 297 ~VI~~~~P 304 (470)
T TIGR00614 297 FVIHYSLP 304 (470)
T ss_pred EEEEeCCC
Confidence 99865543
No 149
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=94.76 E-value=0.22 Score=42.76 Aligned_cols=70 Identities=16% Similarity=0.212 Sum_probs=52.9
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
.+||.|+|++-|..+++.+.+. ++.+..+.|+.+..+... ...++..+|+|||- .+. .++|+.++
T Consensus 247 ~~lVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTd-----v~~--rGiDip~v 314 (456)
T PRK10590 247 QVLVFTRTKHGANHLAEQLNKD-----GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATD-----IAA--RGLDIEEL 314 (456)
T ss_pred cEEEEcCcHHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcc-----HHh--cCCCcccC
Confidence 3699999999999888877653 677888898877544433 34456789999994 454 47999999
Q ss_pred eEEEE
Q 030094 78 EILVL 82 (183)
Q Consensus 78 ~~lVv 82 (183)
.++|.
T Consensus 315 ~~VI~ 319 (456)
T PRK10590 315 PHVVN 319 (456)
T ss_pred CEEEE
Confidence 98874
No 150
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=94.60 E-value=0.18 Score=42.87 Aligned_cols=69 Identities=13% Similarity=0.237 Sum_probs=53.6
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||.|+|++-|..+++.+... ++++..+.|+.+..+... ...++..+|+|||- .+. .++|+.++.
T Consensus 248 ~lVF~~s~~~~~~l~~~L~~~-----~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd-----~~~--~GiDip~v~ 315 (434)
T PRK11192 248 SIVFVRTRERVHELAGWLRKA-----GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD-----VAA--RGIDIDDVS 315 (434)
T ss_pred EEEEeCChHHHHHHHHHHHhC-----CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcc-----ccc--cCccCCCCC
Confidence 799999999999998887663 678888888876554433 44457799999994 443 578999999
Q ss_pred EEEE
Q 030094 79 ILVL 82 (183)
Q Consensus 79 ~lVv 82 (183)
++|.
T Consensus 316 ~VI~ 319 (434)
T PRK11192 316 HVIN 319 (434)
T ss_pred EEEE
Confidence 8874
No 151
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.57 E-value=0.85 Score=41.38 Aligned_cols=98 Identities=15% Similarity=0.185 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhhhhCCCceEEEEEcCcc-----hHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEccc
Q 030094 11 LSSQIYHVAQPFISTLPDVKSVLLVGGVE-----VKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEA 85 (183)
Q Consensus 11 La~Qi~~~~~~l~~~~~~~~~~~~~g~~~-----~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEa 85 (183)
=+.++.+.+++ .+|+.++..+.+... .+.......++.++|+|||. ++. +++|+.++.++++-.|
T Consensus 438 G~e~~~e~l~~---~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~-----~ia--kG~d~p~v~lV~il~a 507 (679)
T PRK05580 438 GTERLEEELAE---LFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQ-----MLA--KGHDFPNVTLVGVLDA 507 (679)
T ss_pred cHHHHHHHHHH---hCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEECh-----hhc--cCCCCCCcCEEEEEcC
Confidence 34455555544 457788877776543 33334556567899999997 343 5799999999999999
Q ss_pred chhhccc-h------HHHHHHHHHhCC---CCCeEEEEeecCC
Q 030094 86 DRLLDMG-F------QKQISYIISRLP---KLRRTGLFSATQT 118 (183)
Q Consensus 86 d~ll~~~-~------~~~l~~i~~~l~---~~~Q~v~~SAT~~ 118 (183)
|..+... | ...+.....+.+ +....++.|....
T Consensus 508 D~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~ 550 (679)
T PRK05580 508 DLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPE 550 (679)
T ss_pred chhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCC
Confidence 9987542 2 122333333332 3456676666554
No 152
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=94.50 E-value=0.2 Score=43.02 Aligned_cols=72 Identities=15% Similarity=0.278 Sum_probs=54.6
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||.|+|++-|..+++.+... ++.+..++|+.+..++.. ...++..+|+|||- .+. .++|+.++.
T Consensus 245 ~lVF~~t~~~~~~l~~~L~~~-----~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTd-----v~~--rGiDi~~v~ 312 (460)
T PRK11776 245 CVVFCNTKKECQEVADALNAQ-----GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATD-----VAA--RGLDIKALE 312 (460)
T ss_pred eEEEECCHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEec-----ccc--cccchhcCC
Confidence 799999999999998877664 677888899877554433 33456789999994 444 479999999
Q ss_pred EEEEccc
Q 030094 79 ILVLDEA 85 (183)
Q Consensus 79 ~lVvDEa 85 (183)
++|.-+.
T Consensus 313 ~VI~~d~ 319 (460)
T PRK11776 313 AVINYEL 319 (460)
T ss_pred eEEEecC
Confidence 8885443
No 153
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=94.29 E-value=0.28 Score=44.04 Aligned_cols=70 Identities=16% Similarity=0.282 Sum_probs=52.5
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHH---HHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
.+||.|+|+.-+.++++.+... ++.+..+.|+.+..+. ...+..+..+|+|||- .+. .++|+.++
T Consensus 247 ~~IVF~~tk~~a~~l~~~L~~~-----g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATd-----v~a--rGIDip~V 314 (629)
T PRK11634 247 AAIIFVRTKNATLEVAEALERN-----GYNSAALNGDMNQALREQTLERLKDGRLDILIATD-----VAA--RGLDVERI 314 (629)
T ss_pred CEEEEeccHHHHHHHHHHHHhC-----CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcc-----hHh--cCCCcccC
Confidence 4799999999999988877653 5678888887665443 3344567899999994 454 46888888
Q ss_pred eEEEE
Q 030094 78 EILVL 82 (183)
Q Consensus 78 ~~lVv 82 (183)
.++|.
T Consensus 315 ~~VI~ 319 (629)
T PRK11634 315 SLVVN 319 (629)
T ss_pred CEEEE
Confidence 88774
No 154
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=94.12 E-value=0.31 Score=42.04 Aligned_cols=71 Identities=13% Similarity=0.154 Sum_probs=53.4
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
.+||.|++++-|..+++.+.+. ++++..+.|+...+++.. ...++...|+|+|. .+. .++|+.++
T Consensus 337 ~~IVF~~s~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~-----~l~--~GIDi~~v 404 (475)
T PRK01297 337 RVMVFANRKDEVRRIEERLVKD-----GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATD-----VAG--RGIHIDGI 404 (475)
T ss_pred eEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEcc-----ccc--cCCcccCC
Confidence 3799999999999988777553 567788888776554433 44456789999994 554 47999999
Q ss_pred eEEEEc
Q 030094 78 EILVLD 83 (183)
Q Consensus 78 ~~lVvD 83 (183)
.++|.-
T Consensus 405 ~~VI~~ 410 (475)
T PRK01297 405 SHVINF 410 (475)
T ss_pred CEEEEe
Confidence 988854
No 155
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=94.03 E-value=0.53 Score=44.23 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=29.0
Q ss_pred CCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEcccchhhc
Q 030094 51 GANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLD 90 (183)
Q Consensus 51 ~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEad~ll~ 90 (183)
.+||+|++..-|...+...+.+ +-.-+++|+||||++-+
T Consensus 431 ~AdivItNHalLl~dl~~~~~i-lp~~~~lViDEAH~l~d 469 (928)
T PRK08074 431 FADLVITNHALLLTDLTSEEPL-LPSYEHIIIDEAHHFEE 469 (928)
T ss_pred cCCEEEECHHHHHHHHhhhccc-CCCCCeEEEECCchHHH
Confidence 3799999999887776441222 34468999999999964
No 156
>PTZ00110 helicase; Provisional
Probab=94.02 E-value=0.35 Score=42.67 Aligned_cols=69 Identities=10% Similarity=0.156 Sum_probs=52.4
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHH---HHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~---~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||.|+|++-|..+.+.++.. ++.+..+.|+....++. ....++...|+|||. .+. .++|+.++.
T Consensus 380 ~LIF~~t~~~a~~l~~~L~~~-----g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTd-----v~~--rGIDi~~v~ 447 (545)
T PTZ00110 380 ILIFVETKKGADFLTKELRLD-----GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATD-----VAS--RGLDVKDVK 447 (545)
T ss_pred EEEEecChHHHHHHHHHHHHc-----CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcc-----hhh--cCCCcccCC
Confidence 799999999999888877642 56778888887755443 344456789999994 444 579999999
Q ss_pred EEEE
Q 030094 79 ILVL 82 (183)
Q Consensus 79 ~lVv 82 (183)
++|.
T Consensus 448 ~VI~ 451 (545)
T PTZ00110 448 YVIN 451 (545)
T ss_pred EEEE
Confidence 9885
No 157
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=93.97 E-value=1.2 Score=40.30 Aligned_cols=75 Identities=12% Similarity=0.323 Sum_probs=56.4
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHH---HHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
++|+|+|+.-|..+.+.+... ++++..+.|+....+. ......++.+|+|||- .+. .++++..++
T Consensus 449 viIf~~t~~~ae~L~~~L~~~-----gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~-----~L~--rGfdlp~v~ 516 (652)
T PRK05298 449 VLVTTLTKRMAEDLTDYLKEL-----GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGIN-----LLR--EGLDIPEVS 516 (652)
T ss_pred EEEEeCCHHHHHHHHHHHhhc-----ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeC-----HHh--CCccccCCc
Confidence 789999999999888877664 6778888777654333 2344456789999994 454 589999999
Q ss_pred EEEEcccchh
Q 030094 79 ILVLDEADRL 88 (183)
Q Consensus 79 ~lVvDEad~l 88 (183)
++|+=|++..
T Consensus 517 lVii~d~eif 526 (652)
T PRK05298 517 LVAILDADKE 526 (652)
T ss_pred EEEEeCCccc
Confidence 9988778753
No 158
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=93.84 E-value=0.26 Score=47.04 Aligned_cols=111 Identities=21% Similarity=0.356 Sum_probs=77.5
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
|+.++|..+.+...++...+-.....+.++.-+.|..+.+-.. + ..-+|+|+||++...+ + ....++++|
T Consensus 1189 ~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lkl--~--~~~~vii~tpe~~d~l-q-----~iQ~v~l~i 1258 (1674)
T KOG0951|consen 1189 AVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLKL--L--QKGQVIISTPEQWDLL-Q-----SIQQVDLFI 1258 (1674)
T ss_pred EEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccchHH--h--hhcceEEechhHHHHH-h-----hhhhcceEe
Confidence 6789999999986666554433333478888888776654332 2 3468999999986655 2 456788999
Q ss_pred Ecccchhhccc------hHHHHHHHHHhCCCCCeEEEEeecCChHHHHH
Q 030094 82 LDEADRLLDMG------FQKQISYIISRLPKLRRTGLFSATQTEAVEEL 124 (183)
Q Consensus 82 vDEad~ll~~~------~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~ 124 (183)
.||+|.+-+.. ... ++.|...+-++.+.+.+|..+.+. +.+
T Consensus 1259 ~d~lh~igg~~g~v~evi~S-~r~ia~q~~k~ir~v~ls~~lana-~d~ 1305 (1674)
T KOG0951|consen 1259 VDELHLIGGVYGAVYEVICS-MRYIASQLEKKIRVVALSSSLANA-RDL 1305 (1674)
T ss_pred eehhhhhcccCCceEEEEee-HHHHHHHHHhheeEEEeehhhccc-hhh
Confidence 99999875321 123 667777777788888888888766 444
No 159
>PTZ00424 helicase 45; Provisional
Probab=93.74 E-value=0.35 Score=40.46 Aligned_cols=70 Identities=14% Similarity=0.212 Sum_probs=52.6
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||.|+|++-|..+.+.+... ++.+..+.|+.+..++.. ...++..+|+|||. .+. .++|+..+.
T Consensus 270 ~ivF~~t~~~~~~l~~~l~~~-----~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~-----~l~--~GiDip~v~ 337 (401)
T PTZ00424 270 AIIYCNTRRKVDYLTKKMHER-----DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTD-----LLA--RGIDVQQVS 337 (401)
T ss_pred EEEEecCcHHHHHHHHHHHHC-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcc-----ccc--CCcCcccCC
Confidence 689999999998887766543 677888899877554433 34456799999994 444 579999999
Q ss_pred EEEEc
Q 030094 79 ILVLD 83 (183)
Q Consensus 79 ~lVvD 83 (183)
++|.-
T Consensus 338 ~VI~~ 342 (401)
T PTZ00424 338 LVINY 342 (401)
T ss_pred EEEEE
Confidence 88853
No 160
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.68 E-value=0.25 Score=44.58 Aligned_cols=110 Identities=19% Similarity=0.203 Sum_probs=59.5
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
.||+||+--+.. ....+.+.... ..+.+...+| ...+...+ .++||+++|++.+.. ..+.--..-.+|
T Consensus 192 tLivcp~s~~~q-W~~elek~~~~-~~l~v~v~~g---r~kd~~el--~~~dVVltTy~il~~-----~~l~~i~w~Rii 259 (674)
T KOG1001|consen 192 TLIVCPTSLLTQ-WKTELEKVTEE-DKLSIYVYHG---RTKDKSEL--NSYDVVLTTYDILKN-----SPLVKIKWLRIV 259 (674)
T ss_pred eeEecchHHHHH-HHHHHhccCCc-cceEEEEecc---cccccchh--cCCceEEeeHHHhhc-----ccccceeEEEEE
Confidence 478888765544 44444555433 2577777777 22223333 468899999976653 111112223579
Q ss_pred EcccchhhccchHHHHHHHHHhCCCCCeEEEEeecC-ChHHHHHHH
Q 030094 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ-TEAVEELSK 126 (183)
Q Consensus 82 vDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~-~~~v~~~~~ 126 (183)
+||||.+-+.. .+.....-.+...++. .+++|. ...+.++..
T Consensus 260 ldea~~ikn~~--tq~~~a~~~L~a~~RW-cLtgtPiqn~~~~lys 302 (674)
T KOG1001|consen 260 LDEAHTIKNKD--TQIFKAVCQLDAKYRW-CLTGTPIQNNLDELYS 302 (674)
T ss_pred eccccccCCcc--hHhhhhheeeccceee-eecCChhhhhHHHHHH
Confidence 99999985433 2233333333334444 445554 444555544
No 161
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=93.62 E-value=3.2 Score=34.64 Aligned_cols=111 Identities=21% Similarity=0.310 Sum_probs=81.2
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEc-CcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVG-GVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g-~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.+|.+|+-|.+.|+...+++.. |..+++.+.+ .....+....++++..+|+|+|- .+++ ++.+.+++.+
T Consensus 308 ~liF~p~I~~~eq~a~~lk~~~---~~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTTT-----ILER--GVTfp~vdV~ 377 (441)
T COG4098 308 VLIFFPEIETMEQVAAALKKKL---PKETIASVHSEDQHRKEKVEAFRDGKITLLITTT-----ILER--GVTFPNVDVF 377 (441)
T ss_pred EEEEecchHHHHHHHHHHHhhC---CccceeeeeccCccHHHHHHHHHcCceEEEEEee-----hhhc--ccccccceEE
Confidence 5899999999999999885543 4556555544 44577888888888899999995 6665 7889999999
Q ss_pred EEcccchhhccchHHHHHHHHHhCCCC-----CeEEEEeecCChHHHHHH
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPKL-----RRTGLFSATQTEAVEELS 125 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~~-----~Q~v~~SAT~~~~v~~~~ 125 (183)
|++--|.++. ...+-.|..+.++. --+++|---.+.++.+..
T Consensus 378 Vlgaeh~vfT---esaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~~A~ 424 (441)
T COG4098 378 VLGAEHRVFT---ESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMKQAR 424 (441)
T ss_pred EecCCccccc---HHHHHHHhhhccCCCcCCCCcEEEEeccchHHHHHHH
Confidence 9999888864 44555666666532 357777776766655433
No 162
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=93.57 E-value=0.47 Score=41.55 Aligned_cols=71 Identities=8% Similarity=0.159 Sum_probs=53.6
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||.|+|+.-|..+.+.+... .++++..+.|+.+..++.. ....+..+|+|||. .+. .++|+.+++
T Consensus 370 ~iVFv~s~~~a~~l~~~L~~~----~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTd-----vl~--rGiDip~v~ 438 (518)
T PLN00206 370 AVVFVSSRLGADLLANAITVV----TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATG-----VLG--RGVDLLRVR 438 (518)
T ss_pred EEEEcCCchhHHHHHHHHhhc----cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEec-----Hhh--ccCCcccCC
Confidence 789999999998887766543 2678888999877654433 34456789999995 444 479999999
Q ss_pred EEEEc
Q 030094 79 ILVLD 83 (183)
Q Consensus 79 ~lVvD 83 (183)
++|.=
T Consensus 439 ~VI~~ 443 (518)
T PLN00206 439 QVIIF 443 (518)
T ss_pred EEEEe
Confidence 98853
No 163
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=93.47 E-value=0.45 Score=42.54 Aligned_cols=71 Identities=11% Similarity=0.178 Sum_probs=53.1
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||.|+|+.-|.++++.+.+. ++++..+.|+.+.++... ....+..+|+|||. .+. .++|..+++
T Consensus 239 ~IIFc~tr~~~e~la~~L~~~-----g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~-----a~~--~GIDip~V~ 306 (607)
T PRK11057 239 GIIYCNSRAKVEDTAARLQSR-----GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATV-----AFG--MGINKPNVR 306 (607)
T ss_pred EEEEECcHHHHHHHHHHHHhC-----CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEec-----hhh--ccCCCCCcC
Confidence 689999999999988877664 677888888876544433 33356789999996 343 578999999
Q ss_pred EEEEcc
Q 030094 79 ILVLDE 84 (183)
Q Consensus 79 ~lVvDE 84 (183)
++|.-.
T Consensus 307 ~VI~~d 312 (607)
T PRK11057 307 FVVHFD 312 (607)
T ss_pred EEEEeC
Confidence 887433
No 164
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=93.45 E-value=1.1 Score=30.55 Aligned_cols=74 Identities=16% Similarity=0.336 Sum_probs=52.5
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHH---HHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
.||.+++++-+.++.+.+.+ +...+..+.|+.+..+. ...+.+....|+++|. .+ . .++|+..+.
T Consensus 31 ~lvf~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~-----~~-~-~G~d~~~~~ 98 (131)
T cd00079 31 VLIFCPSKKMLDELAELLRK-----PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATD-----VI-A-RGIDLPNVS 98 (131)
T ss_pred EEEEeCcHHHHHHHHHHHHh-----cCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcC-----hh-h-cCcChhhCC
Confidence 68999999999999888876 25667788887653322 2234445678999996 23 2 578888888
Q ss_pred EEEEcccch
Q 030094 79 ILVLDEADR 87 (183)
Q Consensus 79 ~lVvDEad~ 87 (183)
.+|+.+.+.
T Consensus 99 ~vi~~~~~~ 107 (131)
T cd00079 99 VVINYDLPW 107 (131)
T ss_pred EEEEeCCCC
Confidence 888777643
No 165
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=93.31 E-value=0.5 Score=44.32 Aligned_cols=114 Identities=17% Similarity=0.213 Sum_probs=62.5
Q ss_pred EEEEeCcHHHHHHHHHHHHH-hhh-----hCCC--ceEEEEEcCc-------chHHHHHHHHh-c-----CCcEEEeCcH
Q 030094 2 GMIISPTRELSSQIYHVAQP-FIS-----TLPD--VKSVLLVGGV-------EVKADVKKIEE-E-----GANLLIGTPG 60 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~-l~~-----~~~~--~~~~~~~g~~-------~~~~~~~~l~~-~-----~~~IiV~TP~ 60 (183)
.||+||+...-..+...+.. .++ .+.+ ++.....++. ....+.+.... . +.+|+|.|-+
T Consensus 92 fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niq 171 (986)
T PRK15483 92 FIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAG 171 (986)
T ss_pred EEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccccccccChHHHHHHHhccccCCCceEEEEEehH
Confidence 58999999888888766551 111 1222 3333333322 22334333222 2 5899999998
Q ss_pred HHHHHHH-h-c----------CCc-CCCCce-EEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCCh
Q 030094 61 RLYDIME-R-M----------DVL-DFRNLE-ILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (183)
Q Consensus 61 ~l~~~l~-~-~----------~~~-~l~~l~-~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~ 119 (183)
.+..-.. + . ..+ .+...+ ++|+||.|++-.. ....+.| ..+.+.+ ++.||||++.
T Consensus 172 a~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~--~k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 172 MLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD--NKFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred HhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc--hHHHHHH-HhcCccc-EEEEeeecCC
Confidence 7755211 0 0 011 133333 6899999998432 1222344 5554433 4669999987
No 166
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.25 E-value=0.95 Score=39.62 Aligned_cols=97 Identities=15% Similarity=0.219 Sum_probs=60.4
Q ss_pred HHHHHHHHHhhhhCCCceEEEEEcCcch-----HHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEcccch
Q 030094 13 SQIYHVAQPFISTLPDVKSVLLVGGVEV-----KADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADR 87 (183)
Q Consensus 13 ~Qi~~~~~~l~~~~~~~~~~~~~g~~~~-----~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEad~ 87 (183)
.++.+.+.+ .+|+.++..+.+.... +.....+.++.++|+|||+ ++. +++|+.++.++++=.+|.
T Consensus 272 e~~~e~l~~---~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~-----~i~--kG~d~~~v~lV~vl~aD~ 341 (505)
T TIGR00595 272 EQVEEELAK---LFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQ-----MIA--KGHHFPNVTLVGVLDADS 341 (505)
T ss_pred HHHHHHHHh---hCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCc-----ccc--cCCCCCcccEEEEEcCcc
Confidence 444444444 4578888877766432 3445566567899999998 343 579999999999999999
Q ss_pred hhccc-h---HHHHHHHHH---hCC---CCCeEEEEeecCCh
Q 030094 88 LLDMG-F---QKQISYIIS---RLP---KLRRTGLFSATQTE 119 (183)
Q Consensus 88 ll~~~-~---~~~l~~i~~---~l~---~~~Q~v~~SAT~~~ 119 (183)
.+... | +.....+.+ +-+ +..+.++-+.....
T Consensus 342 ~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~ 383 (505)
T TIGR00595 342 GLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNH 383 (505)
T ss_pred cccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCC
Confidence 77532 2 222333333 322 24466666655543
No 167
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=93.13 E-value=0.59 Score=41.55 Aligned_cols=71 Identities=11% Similarity=0.227 Sum_probs=52.5
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||.|+||..|.++++.+... ++.+..+.|+.+.++... ....+.++|+|||- .+. .++|..+++
T Consensus 227 ~IIf~~sr~~~e~la~~L~~~-----g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~-----a~~--~GID~p~v~ 294 (591)
T TIGR01389 227 GIIYASSRKKVEELAERLESQ-----GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATN-----AFG--MGIDKPNVR 294 (591)
T ss_pred EEEEECcHHHHHHHHHHHHhC-----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEec-----hhh--ccCcCCCCC
Confidence 689999999999998877653 677888888876544433 33346799999995 343 478888999
Q ss_pred EEEEcc
Q 030094 79 ILVLDE 84 (183)
Q Consensus 79 ~lVvDE 84 (183)
++|.=.
T Consensus 295 ~VI~~~ 300 (591)
T TIGR01389 295 FVIHYD 300 (591)
T ss_pred EEEEcC
Confidence 887533
No 168
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=93.10 E-value=0.32 Score=42.32 Aligned_cols=109 Identities=16% Similarity=0.152 Sum_probs=68.2
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhc-------CCcCC
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM-------DVLDF 74 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~-------~~~~l 74 (183)
||+||.+.--+.|....+...+. ..+-.++-++.... .....++.|+|+|-..+..--++. .-+.-
T Consensus 348 clvLcts~VSVeQWkqQfk~wst-i~d~~i~rFTsd~K------e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~ 420 (776)
T KOG1123|consen 348 CLVLCTSAVSVEQWKQQFKQWST-IQDDQICRFTSDAK------ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRG 420 (776)
T ss_pred EEEEecCccCHHHHHHHHHhhcc-cCccceEEeecccc------ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhc
Confidence 78999999999999988888753 32344444443221 123568999999986543321110 00112
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHH
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~ 122 (183)
....++++||+|.+=..=|..-+.-+-.+. .+.++||+-.+=.
T Consensus 421 ~EWGllllDEVHvvPA~MFRRVlsiv~aHc-----KLGLTATLvREDd 463 (776)
T KOG1123|consen 421 REWGLLLLDEVHVVPAKMFRRVLSIVQAHC-----KLGLTATLVREDD 463 (776)
T ss_pred CeeeeEEeehhccchHHHHHHHHHHHHHHh-----hccceeEEeeccc
Confidence 567899999999985544565555444444 3778999865533
No 169
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=93.07 E-value=0.37 Score=44.53 Aligned_cols=84 Identities=12% Similarity=0.100 Sum_probs=62.0
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHH-HHHHhcC-----CcCCC
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLY-DIMERMD-----VLDFR 75 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~-~~l~~~~-----~~~l~ 75 (183)
+-|++.+--||..=.+.+..+..++ ++++.+...+....+.... ..|||.-||...+- ++++.+= ..-.+
T Consensus 122 VhVVTvNdYLA~RDae~mg~vy~fL-GLsvG~i~~~~~~~~rr~a---Y~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR 197 (925)
T PRK12903 122 VIVSTVNEYLAERDAEEMGKVFNFL-GLSVGINKANMDPNLKREA---YACDITYSVHSELGFDYLRDNMVSSKEEKVQR 197 (925)
T ss_pred eEEEecchhhhhhhHHHHHHHHHHh-CCceeeeCCCCChHHHHHh---ccCCCeeecCcccchhhhhhcccccHHHhcCc
Confidence 4578888899998888888888888 9999988876655544333 46999999998763 3443211 11246
Q ss_pred CceEEEEcccchhh
Q 030094 76 NLEILVLDEADRLL 89 (183)
Q Consensus 76 ~l~~lVvDEad~ll 89 (183)
.+.+.|+||+|.+|
T Consensus 198 ~~~faIVDEVDSIL 211 (925)
T PRK12903 198 GLNFCLIDEVDSIL 211 (925)
T ss_pred ccceeeeccchhee
Confidence 77899999999987
No 170
>PRK13767 ATP-dependent helicase; Provisional
Probab=93.02 E-value=0.85 Score=42.61 Aligned_cols=76 Identities=11% Similarity=0.153 Sum_probs=54.4
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhh-CCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 2 GMIISPTRELSSQIYHVAQPFIST-LPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~-~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
+||.|+||..|..++..+.+.... +.+..+....|+.+.+++.. .++++..+|+|||. .+. .++|+.++
T Consensus 287 ~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs-----~Le--~GIDip~V 359 (876)
T PRK13767 287 TLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSST-----SLE--LGIDIGYI 359 (876)
T ss_pred EEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hHH--hcCCCCCC
Confidence 799999999999998888774331 12456788888877554433 44556789999997 344 36888888
Q ss_pred eEEEEcc
Q 030094 78 EILVLDE 84 (183)
Q Consensus 78 ~~lVvDE 84 (183)
+++|.-.
T Consensus 360 d~VI~~~ 366 (876)
T PRK13767 360 DLVVLLG 366 (876)
T ss_pred cEEEEeC
Confidence 8887533
No 171
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=92.99 E-value=1.5 Score=38.55 Aligned_cols=110 Identities=13% Similarity=0.320 Sum_probs=81.0
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHH---HHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||.+-|+-.|....+-+... ++++..+.+....-+. .+.+..+..||+||- ++++ .++|+-.|.
T Consensus 449 vLVTtLTKkmAEdLT~Yl~e~-----gikv~YlHSdidTlER~eIirdLR~G~~DvLVGI-----NLLR--EGLDiPEVs 516 (663)
T COG0556 449 VLVTTLTKKMAEDLTEYLKEL-----GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI-----NLLR--EGLDLPEVS 516 (663)
T ss_pred EEEEeehHHHHHHHHHHHHhc-----CceEEeeeccchHHHHHHHHHHHhcCCccEEEee-----hhhh--ccCCCccee
Confidence 577788888888776665554 8999999988765444 445656789999996 5775 489999999
Q ss_pred EEEEcccchhhccchHHHHHHHHHhCC-----CCCeEEEEeecCChHHHHHHH
Q 030094 79 ILVLDEADRLLDMGFQKQISYIISRLP-----KLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 79 ~lVvDEad~ll~~~~~~~l~~i~~~l~-----~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
++.+=+||. .||...-.++++.++ .+-.+++..-.+++.+...+.
T Consensus 517 LVAIlDADK---eGFLRse~SLIQtIGRAARN~~GkvIlYAD~iT~sM~~Ai~ 566 (663)
T COG0556 517 LVAILDADK---EGFLRSERSLIQTIGRAARNVNGKVILYADKITDSMQKAID 566 (663)
T ss_pred EEEEeecCc---cccccccchHHHHHHHHhhccCCeEEEEchhhhHHHHHHHH
Confidence 998888998 466655555555543 245789998889988776554
No 172
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.88 E-value=1.8 Score=38.14 Aligned_cols=75 Identities=15% Similarity=0.310 Sum_probs=59.7
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcch---HHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEV---KADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~---~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||.+-+.|-|.|.+..+. .++++.+..+.|..+. ++.......+...++||| +++.+ ++|+..+.
T Consensus 390 ~lIfVQs~eRak~L~~~L~----~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicT-----dll~R--GiDf~gvn 458 (593)
T KOG0344|consen 390 VLIFVQSKERAKQLFEELE----IYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICT-----DLLAR--GIDFKGVN 458 (593)
T ss_pred eEEEEecHHHHHHHHHHhh----hccCcceeeEecccchhHHHHHHHHHhccCeeEEEeh-----hhhhc--cccccCcc
Confidence 5788999999999999887 3358999999998653 344455556789999999 57766 69999999
Q ss_pred EEEEcccch
Q 030094 79 ILVLDEADR 87 (183)
Q Consensus 79 ~lVvDEad~ 87 (183)
++|-++.-.
T Consensus 459 ~VInyD~p~ 467 (593)
T KOG0344|consen 459 LVINYDFPQ 467 (593)
T ss_pred eEEecCCCc
Confidence 999876644
No 173
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=92.58 E-value=0.15 Score=41.49 Aligned_cols=114 Identities=16% Similarity=0.109 Sum_probs=67.5
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhc----CC------
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM----DV------ 71 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~----~~------ 71 (183)
+|++..+.+|-....+-++.+... .+.+..+..-... .. ....-.|+.+|-..|..--... ..
T Consensus 94 ~vwvS~s~dL~~Da~RDl~DIG~~--~i~v~~l~~~~~~-~~----~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~ 166 (303)
T PF13872_consen 94 AVWVSVSNDLKYDAERDLRDIGAD--NIPVHPLNKFKYG-DI----IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVD 166 (303)
T ss_pred eEEEECChhhhhHHHHHHHHhCCC--cccceechhhccC-cC----CCCCCCccchhHHHHHhHHhccCCccchHHHHHH
Confidence 577888888888877777777543 3333333221100 00 0123358888877665553210 01
Q ss_pred ---cCCCCceEEEEcccchhhccc--------hHHHHHHHHHhCCCCCeEEEEeecCChHHHHHH
Q 030094 72 ---LDFRNLEILVLDEADRLLDMG--------FQKQISYIISRLPKLRRTGLFSATQTEAVEELS 125 (183)
Q Consensus 72 ---~~l~~l~~lVvDEad~ll~~~--------~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~ 125 (183)
-+++ .++|+||+|..=+.. ....+..+-+.+|+ .+++++|||--.+.++++
T Consensus 167 W~g~dfd--gvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~-ARvvY~SATgasep~Nma 228 (303)
T PF13872_consen 167 WCGEDFD--GVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPN-ARVVYASATGASEPRNMA 228 (303)
T ss_pred HHhcCCC--ceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCC-CcEEEecccccCCCceee
Confidence 1122 389999999985432 23456666777764 559999999987766664
No 174
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=92.26 E-value=1.3 Score=42.09 Aligned_cols=104 Identities=13% Similarity=0.212 Sum_probs=72.9
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHH---HHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKA---DVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
|+-+|.|--|-..++.+.++.+ .|..+++...|...-.+ -+....++..||+|||- +++. ++|.-+.
T Consensus 805 QvfYv~NrV~~Ie~~~~~L~~L---VPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT-----IIEt--GIDIPnA 874 (1139)
T COG1197 805 QVFYVHNRVESIEKKAERLREL---VPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT-----IIET--GIDIPNA 874 (1139)
T ss_pred EEEEEecchhhHHHHHHHHHHh---CCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee-----eeec--CcCCCCC
Confidence 3456667666666666666665 48899999998766433 33344467899999994 6664 7999999
Q ss_pred eEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCC
Q 030094 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (183)
Q Consensus 78 ~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~ 118 (183)
-.+|++-||++ | ..++..+-.+.++..+.-++=-+.+
T Consensus 875 NTiIIe~AD~f---G-LsQLyQLRGRVGRS~~~AYAYfl~p 911 (1139)
T COG1197 875 NTIIIERADKF---G-LAQLYQLRGRVGRSNKQAYAYFLYP 911 (1139)
T ss_pred ceEEEeccccc---c-HHHHHHhccccCCccceEEEEEeec
Confidence 99999999997 3 5566667777776655444433433
No 175
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.23 E-value=0.31 Score=43.10 Aligned_cols=147 Identities=12% Similarity=-0.009 Sum_probs=87.4
Q ss_pred EEEeCcHHHHHHHHHHHHHhhhhCCCceEEEE--EcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcC----CCC
Q 030094 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLL--VGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLD----FRN 76 (183)
Q Consensus 3 lIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~--~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~----l~~ 76 (183)
+...|+.|+++.-.+.+.-.....|..+.+.+ +.|.+ +...+.+...|.+++.+.|......+-. +..+ +-+
T Consensus 335 ~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~V~~~D~~s-E~~~~A~~R~~~~~~~s~~~~~~s~~L~-~~~~~~~~~~~ 412 (1034)
T KOG4150|consen 335 LLPSEMVEHLRNGSKGQVVHVEVIKARKSAYVEMSDKLS-ETTKSALKRIGLNTLYSHQAEAISAALA-KSLCYNVPVFE 412 (1034)
T ss_pred ecchhHHHHhhccCCceEEEEEehhhhhcceeecccCCC-chhHHHHHhcCcceeecCHHHHHHHHhh-hccccccHHHH
Confidence 45567777776443332222223333333222 23333 3444555577999999999887665433 3332 456
Q ss_pred ceEEEEcccchhhccchHHHHHHHHHhC---------CCCCeEEEEeecCChHHHHHHHhhCCCCe-EEEEccCCccccc
Q 030094 77 LEILVLDEADRLLDMGFQKQISYIISRL---------PKLRRTGLFSATQTEAVEELSKAGLRNPV-RVEVRAESKSHHV 146 (183)
Q Consensus 77 l~~lVvDEad~ll~~~~~~~l~~i~~~l---------~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~-~i~~~~~~~~~~~ 146 (183)
.++.++||.|..+.. |...+...++++ ..+-|++-.|||+.+.+.....-+--+-+ .|..+..
T Consensus 413 ~~~~~~~~~~~Y~~~-~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGS------ 485 (1034)
T KOG4150|consen 413 ELCKDTNSCALYLFP-TKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGS------ 485 (1034)
T ss_pred HHHhcccceeeeecc-hhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCC------
Confidence 678899999987642 444444333333 34679999999999998777665543443 4443333
Q ss_pred ccchhhcccCCCccCceEEEEEec
Q 030094 147 SASSQQLASSKTPLGLHLEVIWNV 170 (183)
Q Consensus 147 ~~~~~~~~~~~~~~~l~q~~i~~~ 170 (183)
|.+-+++++|.+
T Consensus 486 ------------Ps~~K~~V~WNP 497 (1034)
T KOG4150|consen 486 ------------PSSEKLFVLWNP 497 (1034)
T ss_pred ------------CCccceEEEeCC
Confidence 667778887765
No 176
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=92.01 E-value=0.21 Score=38.26 Aligned_cols=41 Identities=24% Similarity=0.331 Sum_probs=33.1
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEee
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SA 115 (183)
....++++||+|.=+|......+..++..+.+.+|+++.|.
T Consensus 157 ~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th 197 (220)
T PF02463_consen 157 KPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTH 197 (220)
T ss_dssp S--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S
T ss_pred ccccccccccccccccccccccccccccccccccccccccc
Confidence 45679999999999998888999999999988999998753
No 177
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=91.92 E-value=1.1 Score=41.56 Aligned_cols=71 Identities=15% Similarity=0.260 Sum_probs=55.4
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHh---cCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEE---EGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||.+|+++-+.++++.+++... +++.+..++|+.+.+++.+.+.. +...|||+|. ..+ .++++.+++
T Consensus 212 iLVFlpg~~eI~~l~~~L~~~~~--~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATn-----IAE--rgItIp~V~ 282 (819)
T TIGR01970 212 ILVFLPGQAEIRRVQEQLAERLD--SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATN-----IAE--TSLTIEGIR 282 (819)
T ss_pred EEEEECCHHHHHHHHHHHHhhcC--CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecc-----hHh--hcccccCce
Confidence 69999999999988888876322 37889999999988877766543 3468999995 444 579999998
Q ss_pred EEE
Q 030094 79 ILV 81 (183)
Q Consensus 79 ~lV 81 (183)
++|
T Consensus 283 ~VI 285 (819)
T TIGR01970 283 VVI 285 (819)
T ss_pred EEE
Confidence 776
No 178
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=91.88 E-value=3.8 Score=37.66 Aligned_cols=126 Identities=15% Similarity=0.127 Sum_probs=75.4
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcch--HHHHHHHH----hcCCcEEEeCcHHHHHHHHhcCCcCCC
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEV--KADVKKIE----EEGANLLIGTPGRLYDIMERMDVLDFR 75 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~--~~~~~~l~----~~~~~IiV~TP~~l~~~l~~~~~~~l~ 75 (183)
+||++|.. |..-..+++.+..... .+....++|+..- -...+.+. ...--|++-+-+.+.++++. +...
T Consensus 301 ~lVV~P~s-Lv~nWkkEF~KWl~~~-~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~---il~~ 375 (776)
T KOG0390|consen 301 PLVVAPSS-LVNNWKKEFGKWLGNH-RINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK---ILLI 375 (776)
T ss_pred cEEEccHH-HHHHHHHHHHHhcccc-ccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH---HhcC
Confidence 58888854 4555555555554322 5666666666552 11212111 11234667777777766654 5667
Q ss_pred CceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecC-ChHHHHHHHhh-CCCCeEE
Q 030094 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ-TEAVEELSKAG-LRNPVRV 135 (183)
Q Consensus 76 ~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~-~~~v~~~~~~~-~~~~~~i 135 (183)
.+.++|+||.|++=+ -...+...+..+ +-+..|++|.|+ .+++.++.+.. +-+|-.+
T Consensus 376 ~~glLVcDEGHrlkN--~~s~~~kaL~~l-~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~L 434 (776)
T KOG0390|consen 376 RPGLLVCDEGHRLKN--SDSLTLKALSSL-KTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFL 434 (776)
T ss_pred CCCeEEECCCCCccc--hhhHHHHHHHhc-CCCceEEeeCCcccccHHHHHHHHhhcChhhc
Confidence 889999999999843 344555556666 345667778885 66777766643 4455444
No 179
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=91.84 E-value=0.24 Score=46.07 Aligned_cols=106 Identities=18% Similarity=0.222 Sum_probs=59.7
Q ss_pred EEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchH-HHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVK-ADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 3 lIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~-~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
||+||+--|..=..+ +..-.|++......|..... .-...+..++.+|+++|-+.+.+ .+.-+.--+.+++|
T Consensus 448 LvivPlstL~NW~~E----f~kWaPSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik---dk~lLsKI~W~yMI 520 (1157)
T KOG0386|consen 448 LIIVPLSTLVNWSSE----FPKWAPSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK---DKALLSKISWKYMI 520 (1157)
T ss_pred EEeccccccCCchhh----ccccccceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC---CHHHHhccCCccee
Confidence 688888877764433 33334677776666654422 22223445689999999875544 21222334456899
Q ss_pred EcccchhhccchHHHHHHHHHhCCCCCeEEEEeecC
Q 030094 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (183)
Q Consensus 82 vDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~ 117 (183)
|||.|+|= +....+..-+..--.....++.+.|.
T Consensus 521 IDEGHRmK--Na~~KLt~~L~t~y~~q~RLLLTGTP 554 (1157)
T KOG0386|consen 521 IDEGHRMK--NAICKLTDTLNTHYRAQRRLLLTGTP 554 (1157)
T ss_pred eccccccc--chhhHHHHHhhccccchhhhhhcCCh
Confidence 99999983 23333333333222333445556664
No 180
>PHA02653 RNA helicase NPH-II; Provisional
Probab=91.74 E-value=0.83 Score=41.42 Aligned_cols=70 Identities=16% Similarity=0.309 Sum_probs=52.1
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHH-HHHH-HhcCCcEEEeCcHHHHHHHHhcCCcCCCCceE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKAD-VKKI-EEEGANLLIGTPGRLYDIMERMDVLDFRNLEI 79 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~-~~~l-~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~ 79 (183)
+||.+||++-+..+.+.+++.. +++.+..++|+.+..++ .+.. .++...|+|+|. ..+ .+++..++.+
T Consensus 398 iLVFlpg~~ei~~l~~~L~~~~---~~~~v~~LHG~Lsq~eq~l~~ff~~gk~kILVATd-----IAE--RGIDIp~V~~ 467 (675)
T PHA02653 398 GIVFVASVSQCEEYKKYLEKRL---PIYDFYIIHGKVPNIDEILEKVYSSKNPSIIISTP-----YLE--SSVTIRNATH 467 (675)
T ss_pred EEEEECcHHHHHHHHHHHHhhc---CCceEEeccCCcCHHHHHHHHHhccCceeEEeccC-----hhh--ccccccCeeE
Confidence 7999999998887777666542 46889999998775533 2444 345689999996 444 5899999988
Q ss_pred EE
Q 030094 80 LV 81 (183)
Q Consensus 80 lV 81 (183)
+|
T Consensus 468 VI 469 (675)
T PHA02653 468 VY 469 (675)
T ss_pred EE
Confidence 76
No 181
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=91.69 E-value=0.97 Score=39.41 Aligned_cols=116 Identities=17% Similarity=0.256 Sum_probs=70.8
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHh-cCC------cC-
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-MDV------LD- 73 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~-~~~------~~- 73 (183)
.|+++|+-.|. |..+.+.+.+++ .+++....|. ........+ .+.|++.+|...+-.-.++ ..+ .+
T Consensus 234 tLVvaP~VAlm-QW~nEI~~~T~g--slkv~~YhG~-~R~~nikel--~~YDvVLTty~vvEs~yRk~~~GfrrKngv~k 307 (791)
T KOG1002|consen 234 TLVVAPTVALM-QWKNEIERHTSG--SLKVYIYHGA-KRDKNIKEL--MNYDVVLTTYAVVESVYRKQDYGFRRKNGVDK 307 (791)
T ss_pred eeEEccHHHHH-HHHHHHHHhccC--ceEEEEEecc-cccCCHHHh--hcCcEEEEecHHHHHHHHhccccccccCCccc
Confidence 58999999864 666777777663 5676666654 444444555 4789999999877665543 111 22
Q ss_pred ----CCCceE--EEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecC-ChHHHHHHH
Q 030094 74 ----FRNLEI--LVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ-TEAVEELSK 126 (183)
Q Consensus 74 ----l~~l~~--lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~-~~~v~~~~~ 126 (183)
+.++++ +|+||||-+=+.. ..-.+..-.+ +....+++|.|. .+.+-++..
T Consensus 308 e~SlLHsi~~~RiIlDEAH~IK~R~--snTArAV~~L-~tt~rw~LSGTPLQNrigElyS 364 (791)
T KOG1002|consen 308 EKSLLHSIKFYRIILDEAHNIKDRQ--SNTARAVFAL-ETTYRWCLSGTPLQNRIGELYS 364 (791)
T ss_pred ccchhhhceeeeeehhhhccccccc--ccHHHHHHhh-HhhhhhhccCCcchhhHHHHHH
Confidence 566775 6999999985432 1222222222 234457778885 444544433
No 182
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=91.58 E-value=0.72 Score=44.41 Aligned_cols=73 Identities=23% Similarity=0.329 Sum_probs=52.8
Q ss_pred CEEEEeCcH---HHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCC-
Q 030094 1 MGMIISPTR---ELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRN- 76 (183)
Q Consensus 1 ~alIl~Ptr---eLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~- 76 (183)
.+||.|||+ +-|..+.+.+++. ++++..+.|+.+ ....+...++..+|+|||.. ..+.+. .++|+.+
T Consensus 328 ~~IVFv~t~~~~~~a~~l~~~L~~~-----g~~a~~lhg~~~-~~~l~~Fr~G~~~vLVata~-~tdv~a--RGIDip~~ 398 (1171)
T TIGR01054 328 GGIVYVSIDYGKEKAEEIAEFLENH-----GVKAVAYHATKP-KEDYEKFAEGEIDVLIGVAS-YYGTLV--RGLDLPER 398 (1171)
T ss_pred CEEEEEeccccHHHHHHHHHHHHhC-----CceEEEEeCCCC-HHHHHHHHcCCCCEEEEecc-ccCccc--ccCCCCcc
Confidence 379999999 8888887766553 688899999875 34556666788999999731 012333 4788877
Q ss_pred ceEEEE
Q 030094 77 LEILVL 82 (183)
Q Consensus 77 l~~lVv 82 (183)
++++|.
T Consensus 399 V~~vI~ 404 (1171)
T TIGR01054 399 VRYAVF 404 (1171)
T ss_pred ccEEEE
Confidence 788887
No 183
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=91.56 E-value=1.5 Score=36.49 Aligned_cols=68 Identities=19% Similarity=0.209 Sum_probs=48.4
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
+||+|+|+.-|..+++.+++.. . +..+..+.|..+..++.+. ...+|+|||. .+. .++|+... .+|
T Consensus 275 ~LIf~nt~~~~~~l~~~L~~~~--~-~~~~~~l~g~~~~~~R~~~---~~~~iLVaTd-----v~~--rGiDi~~~-~vi 340 (357)
T TIGR03158 275 GAIILDSLDEVNRLSDLLQQQG--L-GDDIGRITGFAPKKDRERA---MQFDILLGTS-----TVD--VGVDFKRD-WLI 340 (357)
T ss_pred EEEEECCHHHHHHHHHHHhhhC--C-CceEEeeecCCCHHHHHHh---ccCCEEEEec-----HHh--cccCCCCc-eEE
Confidence 7999999999999999888742 2 4566777776665544322 3689999996 454 47887766 555
Q ss_pred Ec
Q 030094 82 LD 83 (183)
Q Consensus 82 vD 83 (183)
.|
T Consensus 341 ~~ 342 (357)
T TIGR03158 341 FS 342 (357)
T ss_pred EC
Confidence 54
No 184
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.56 E-value=1 Score=39.39 Aligned_cols=84 Identities=13% Similarity=0.234 Sum_probs=61.7
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHH---hcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIE---EEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~---~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||.|-|+.-|.++...+++. +..+..+.|..+..+....|. ++.+.|+|||- .. . .++|+.+|+
T Consensus 344 vIIFc~tkr~~~~l~~~l~~~-----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATd-----VA-a-RGLDi~dV~ 411 (519)
T KOG0331|consen 344 VIIFCETKRTCDELARNLRRK-----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATD-----VA-A-RGLDVPDVD 411 (519)
T ss_pred EEEEecchhhHHHHHHHHHhc-----CcceeeecccccHHHHHHHHHhcccCCcceEEEcc-----cc-c-ccCCCcccc
Confidence 799999999999888876664 467889999888766655443 56799999995 32 3 689999999
Q ss_pred EEEEcccchhhccchHHHHHHHHHhCC
Q 030094 79 ILVLDEADRLLDMGFQKQISYIISRLP 105 (183)
Q Consensus 79 ~lVvDEad~ll~~~~~~~l~~i~~~l~ 105 (183)
++| ..+|...++.-+.+.+
T Consensus 412 lVI--------nydfP~~vEdYVHRiG 430 (519)
T KOG0331|consen 412 LVI--------NYDFPNNVEDYVHRIG 430 (519)
T ss_pred EEE--------eCCCCCCHHHHHhhcC
Confidence 988 3345555555555554
No 185
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=91.54 E-value=1.1 Score=39.17 Aligned_cols=68 Identities=16% Similarity=0.282 Sum_probs=53.8
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHH---HhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l---~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
.+|.+.|++=|.-+.+.+.+. +.+++.+.||.+.++....| ..+..+|+|||- . .. .++|..++.
T Consensus 520 iIIFvN~kk~~d~lAk~LeK~-----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTD-----v-Ag-RGIDIpnVS 587 (673)
T KOG0333|consen 520 IIIFVNTKKGADALAKILEKA-----GYKVTTLHGGKSQEQRENALADFREGTGDILVATD-----V-AG-RGIDIPNVS 587 (673)
T ss_pred EEEEEechhhHHHHHHHHhhc-----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEec-----c-cc-cCCCCCccc
Confidence 588999999998888877776 67899999998877665543 345689999995 2 23 689999999
Q ss_pred EEE
Q 030094 79 ILV 81 (183)
Q Consensus 79 ~lV 81 (183)
++|
T Consensus 588 lVi 590 (673)
T KOG0333|consen 588 LVI 590 (673)
T ss_pred eee
Confidence 887
No 186
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=91.37 E-value=2.3 Score=35.22 Aligned_cols=73 Identities=19% Similarity=0.190 Sum_probs=43.7
Q ss_pred EEeCcHHHHHHHHhcCCcCCCCceEEEEcccchhhcc-------chHHHHHHHHHhCC------CCCeEEEEeecCChH-
Q 030094 55 LIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDM-------GFQKQISYIISRLP------KLRRTGLFSATQTEA- 120 (183)
Q Consensus 55 iV~TP~~l~~~l~~~~~~~l~~l~~lVvDEad~ll~~-------~~~~~l~~i~~~l~------~~~Q~v~~SAT~~~~- 120 (183)
.+..|..+...... .........++|+||||++... .....+..+++.-. ...|.+--+...+.+
T Consensus 63 ~~~~~~~~i~~~~~-~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~~kv~v~f~D~~Q~i~~~e~~~~~~ 141 (352)
T PF09848_consen 63 DFRKPTSFINNYSE-SDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKRAKVVVFFYDENQSIRPSEIGTLEN 141 (352)
T ss_pred hhhhhHHHHhhccc-ccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhcCCEEEEEEccccEeecccCCCHHH
Confidence 34445444433331 2234567789999999999873 12467777777632 245777776666554
Q ss_pred HHHHHHhh
Q 030094 121 VEELSKAG 128 (183)
Q Consensus 121 v~~~~~~~ 128 (183)
+..++..+
T Consensus 142 l~~~~~~~ 149 (352)
T PF09848_consen 142 LEEIAENL 149 (352)
T ss_pred HHHHHHhc
Confidence 55555544
No 187
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=91.32 E-value=3.1 Score=38.10 Aligned_cols=69 Identities=19% Similarity=0.284 Sum_probs=49.9
Q ss_pred HHHHHHHHHhhhhCCCceEEEEEcCcch-----HHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEcccch
Q 030094 13 SQIYHVAQPFISTLPDVKSVLLVGGVEV-----KADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADR 87 (183)
Q Consensus 13 ~Qi~~~~~~l~~~~~~~~~~~~~g~~~~-----~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEad~ 87 (183)
+++.+++.+ .+|+.++.-+.++... +........+.+||+|||+ ++- ++.++-++.++++=.||.
T Consensus 494 erieeeL~~---~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQ-----mia--KG~~fp~vtLVgvl~aD~ 563 (730)
T COG1198 494 ERIEEELKR---LFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQ-----MIA--KGHDFPNVTLVGVLDADT 563 (730)
T ss_pred HHHHHHHHH---HCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecch-----hhh--cCCCcccceEEEEEechh
Confidence 344455544 5678888877766543 3345556668899999997 454 579999999998888999
Q ss_pred hhcc
Q 030094 88 LLDM 91 (183)
Q Consensus 88 ll~~ 91 (183)
++..
T Consensus 564 ~L~~ 567 (730)
T COG1198 564 GLGS 567 (730)
T ss_pred hhcC
Confidence 9864
No 188
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=91.23 E-value=1.2 Score=40.87 Aligned_cols=78 Identities=12% Similarity=0.147 Sum_probs=55.5
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhC-C--CceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCC
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTL-P--DVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDF 74 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~-~--~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l 74 (183)
++||.|+||..|..+++.+++..... + +.++....||...+++.. .++++..+++|+|. .+.. ++|.
T Consensus 273 ~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd-----~ler--GIDI 345 (742)
T TIGR03817 273 RTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTN-----ALEL--GVDI 345 (742)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECc-----hHhc--cCCc
Confidence 47999999999999999887753321 1 356677788776544433 44566789999995 5544 7888
Q ss_pred CCceEEEEccc
Q 030094 75 RNLEILVLDEA 85 (183)
Q Consensus 75 ~~l~~lVvDEa 85 (183)
.+++++|.-+.
T Consensus 346 ~~vd~VI~~~~ 356 (742)
T TIGR03817 346 SGLDAVVIAGF 356 (742)
T ss_pred ccccEEEEeCC
Confidence 88888876554
No 189
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.02 E-value=0.65 Score=40.35 Aligned_cols=78 Identities=15% Similarity=0.099 Sum_probs=47.8
Q ss_pred eCcHHHHHHHHh-------cCCcCCCCceEEEEcccchhh-cc-chHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHh
Q 030094 57 GTPGRLYDIMER-------MDVLDFRNLEILVLDEADRLL-DM-GFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (183)
Q Consensus 57 ~TP~~l~~~l~~-------~~~~~l~~l~~lVvDEad~ll-~~-~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~ 127 (183)
+||..++.++.. +..-.+.+-+.+|+||||.=. .. -....++.+...- ++-.++.+|||+... -.+.
T Consensus 133 ~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~r-pdLk~vvmSatl~a~---Kfq~ 208 (699)
T KOG0925|consen 133 TSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNR-PDLKLVVMSATLDAE---KFQR 208 (699)
T ss_pred CChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhC-CCceEEEeecccchH---HHHH
Confidence 566666666542 112347888999999999731 11 1233444444444 478899999998733 3455
Q ss_pred hCCCCeEEEEc
Q 030094 128 GLRNPVRVEVR 138 (183)
Q Consensus 128 ~~~~~~~i~~~ 138 (183)
|+.|+-.+.+.
T Consensus 209 yf~n~Pll~vp 219 (699)
T KOG0925|consen 209 YFGNAPLLAVP 219 (699)
T ss_pred HhCCCCeeecC
Confidence 66666555544
No 190
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=90.98 E-value=1.6 Score=41.74 Aligned_cols=125 Identities=14% Similarity=0.193 Sum_probs=71.8
Q ss_pred EEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHH---Hhc-----CCcEEEeCcHHHHHHHHhcCCcCC
Q 030094 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKI---EEE-----GANLLIGTPGRLYDIMERMDVLDF 74 (183)
Q Consensus 3 lIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l---~~~-----~~~IiV~TP~~l~~~l~~~~~~~l 74 (183)
||+||-.-++.= .+.+..- . +..+.+..|.....+-.+.. .+. .++++++|-+.++.--. -+.-
T Consensus 424 lvvvplst~~~W-~~ef~~w---~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~---~L~~ 495 (1373)
T KOG0384|consen 424 LVVVPLSTITAW-EREFETW---T-DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA---ELSK 495 (1373)
T ss_pred EEEeehhhhHHH-HHHHHHH---h-hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh---hhcc
Confidence 677886654432 2333333 2 56777777766544443322 222 48999999876544221 1222
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHh-hCCCCeEEEE
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA-GLRNPVRVEV 137 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~-~~~~~~~i~~ 137 (183)
-...++++||||+|=+ -...+-..+..+.-+...++.+.-+.+.++++... ++..|-.+..
T Consensus 496 i~w~~~~vDeahrLkN--~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~ 557 (1373)
T KOG0384|consen 496 IPWRYLLVDEAHRLKN--DESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDS 557 (1373)
T ss_pred CCcceeeecHHhhcCc--hHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCc
Confidence 3356899999999843 23444444666655555555444467778887753 3556655544
No 191
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=90.71 E-value=1.5 Score=40.60 Aligned_cols=71 Identities=17% Similarity=0.233 Sum_probs=55.1
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHh---cCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEE---EGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||.+|+++-+.++++.+++... .++.+..++|+.+.+++...+.. +...|||+|. ..+ .++++.++.
T Consensus 215 iLVFlpg~~ei~~l~~~L~~~~~--~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATn-----IAE--rsLtIp~V~ 285 (812)
T PRK11664 215 LLLFLPGVGEIQRVQEQLASRVA--SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATN-----IAE--TSLTIEGIR 285 (812)
T ss_pred EEEEcCCHHHHHHHHHHHHHhcc--CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecc-----hHH--hcccccCce
Confidence 69999999999999988886321 26888999999888777665532 3468999996 444 579999999
Q ss_pred EEE
Q 030094 79 ILV 81 (183)
Q Consensus 79 ~lV 81 (183)
++|
T Consensus 286 ~VI 288 (812)
T PRK11664 286 LVV 288 (812)
T ss_pred EEE
Confidence 776
No 192
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=90.69 E-value=0.19 Score=37.26 Aligned_cols=38 Identities=32% Similarity=0.548 Sum_probs=25.8
Q ss_pred CCcEEEeCcHHHHHHHHhcCC---cCCCCceEEEEcccchhhc
Q 030094 51 GANLLIGTPGRLYDIMERMDV---LDFRNLEILVLDEADRLLD 90 (183)
Q Consensus 51 ~~~IiV~TP~~l~~~l~~~~~---~~l~~l~~lVvDEad~ll~ 90 (183)
.+||+|++-.-|..-... .. ++++. .++|+||||.+.+
T Consensus 119 ~adivi~~y~yl~~~~~~-~~~~~~~~~~-~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 119 NADIVICNYNYLFDPSIR-KSLFGIDLKD-NIVIFDEAHNLED 159 (174)
T ss_dssp G-SEEEEETHHHHSHHHH-HHHCT--CCC-EEEEETTGGGCGG
T ss_pred cCCEEEeCHHHHhhHHHH-hhhccccccC-cEEEEecccchHH
Confidence 589999999877665433 22 33444 6899999999865
No 193
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=90.54 E-value=0.68 Score=41.54 Aligned_cols=96 Identities=22% Similarity=0.375 Sum_probs=67.4
Q ss_pred CEEEEeCcHHHHH-----HHHHHHHHhhhhCCCceEEEEEcCcchHHH---HHHHHhcCCcEEEeCcHHHHHHHHhcCCc
Q 030094 1 MGMIISPTRELSS-----QIYHVAQPFISTLPDVKSVLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVL 72 (183)
Q Consensus 1 ~alIl~PtreLa~-----Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~~IiV~TP~~l~~~l~~~~~~ 72 (183)
||-|+||--|=.. -..+.+..+...+|+.++..+.|....++. +...+++..||+|+|- .++ -++
T Consensus 475 QaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTT-----VIE--VGV 547 (677)
T COG1200 475 QAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATT-----VIE--VGV 547 (677)
T ss_pred EEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEee-----EEE--ecc
Confidence 5778888665332 344455555567788999999998774333 3344456899999995 343 478
Q ss_pred CCCCceEEEEcccchhhccchHHHHHHHHHhCCCC
Q 030094 73 DFRNLEILVLDEADRLLDMGFQKQISYIISRLPKL 107 (183)
Q Consensus 73 ~l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~ 107 (183)
|.-+-.+.|+..|+++ | ..++..+-.+.++.
T Consensus 548 dVPnATvMVIe~AERF---G-LaQLHQLRGRVGRG 578 (677)
T COG1200 548 DVPNATVMVIENAERF---G-LAQLHQLRGRVGRG 578 (677)
T ss_pred cCCCCeEEEEechhhh---h-HHHHHHhccccCCC
Confidence 9999999999999996 2 45666666666643
No 194
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=90.52 E-value=0.26 Score=34.15 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=20.7
Q ss_pred eEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEee
Q 030094 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (183)
Q Consensus 78 ~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SA 115 (183)
.++|+||||.+.+..+...+..+.+ ....++++++.
T Consensus 89 ~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~ 124 (131)
T PF13401_consen 89 VLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGT 124 (131)
T ss_dssp EEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEES
T ss_pred eEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEEC
Confidence 7999999999643233344433333 33445555443
No 195
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=90.43 E-value=1.8 Score=37.78 Aligned_cols=103 Identities=17% Similarity=0.221 Sum_probs=55.3
Q ss_pred EEEeCcHHHHHHHHHHHHHhhhhCCCce-EEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 3 MIISPTRELSSQIYHVAQPFISTLPDVK-SVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 3 lIl~PtreLa~Qi~~~~~~l~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
||+||..-+ .-..+.+.++. |... +..+.++.+..... ..-+.|.|-+-+.+..+-+ .+.-...+.+|
T Consensus 245 liVcPAsvr-ftWa~al~r~l---ps~~pi~vv~~~~D~~~~~----~t~~~v~ivSye~ls~l~~---~l~~~~~~vvI 313 (689)
T KOG1000|consen 245 LIVCPASVR-FTWAKALNRFL---PSIHPIFVVDKSSDPLPDV----CTSNTVAIVSYEQLSLLHD---ILKKEKYRVVI 313 (689)
T ss_pred EEEecHHHh-HHHHHHHHHhc---ccccceEEEecccCCcccc----ccCCeEEEEEHHHHHHHHH---HHhcccceEEE
Confidence 688885332 23344455544 3332 34445544432221 1224567777655444322 23334578999
Q ss_pred EcccchhhccchHHHHHHHHHhCCCCCeEEEEeecC
Q 030094 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (183)
Q Consensus 82 vDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~ 117 (183)
+||.|.|=+. -....+.++..+.+-.+++++|.|.
T Consensus 314 ~DEsH~Lk~s-ktkr~Ka~~dllk~akhvILLSGTP 348 (689)
T KOG1000|consen 314 FDESHMLKDS-KTKRTKAATDLLKVAKHVILLSGTP 348 (689)
T ss_pred Eechhhhhcc-chhhhhhhhhHHHHhhheEEecCCc
Confidence 9999998543 2333555555555555667777664
No 196
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=90.29 E-value=1.5 Score=36.17 Aligned_cols=72 Identities=17% Similarity=0.320 Sum_probs=50.0
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHH-------HHHHHhcCCcEEEeCcHHHHHHHHhcCCcC
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKAD-------VKKIEEEGANLLIGTPGRLYDIMERMDVLD 73 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~-------~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~ 73 (183)
.+||+|+|++-|..+++.+++.. ++..+..+.|+....+. .+...++.+.|+|||. .+. .++|
T Consensus 224 ~~lVf~~t~~~~~~~~~~L~~~~---~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~-----~~~--~GiD 293 (358)
T TIGR01587 224 KIAIIVNTVDRAQEFYQQLKENA---PEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQ-----VIE--ASLD 293 (358)
T ss_pred eEEEEECCHHHHHHHHHHHHhhc---CCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECc-----chh--ceec
Confidence 37999999999999888777642 24578888888654433 2334456789999996 444 3677
Q ss_pred CCCceEEEEc
Q 030094 74 FRNLEILVLD 83 (183)
Q Consensus 74 l~~l~~lVvD 83 (183)
+. +.++|.+
T Consensus 294 i~-~~~vi~~ 302 (358)
T TIGR01587 294 IS-ADVMITE 302 (358)
T ss_pred cC-CCEEEEc
Confidence 73 5666654
No 197
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=89.47 E-value=1.7 Score=41.55 Aligned_cols=69 Identities=13% Similarity=0.205 Sum_probs=52.3
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||.|.||.-+.++++.+.+. ++++....||.+..+... ....+..+|||||- .+. -++|..+++
T Consensus 683 gIIYC~SRke~E~LAe~L~~~-----Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATd-----AFG--MGIDkPDVR 750 (1195)
T PLN03137 683 GIIYCLSRMDCEKVAERLQEF-----GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATV-----AFG--MGINKPDVR 750 (1195)
T ss_pred ceeEeCchhHHHHHHHHHHHC-----CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEec-----hhh--cCCCccCCc
Confidence 689999999999888876653 678888899877554433 34456789999995 333 479999999
Q ss_pred EEEE
Q 030094 79 ILVL 82 (183)
Q Consensus 79 ~lVv 82 (183)
++|-
T Consensus 751 ~VIH 754 (1195)
T PLN03137 751 FVIH 754 (1195)
T ss_pred EEEE
Confidence 9884
No 198
>PRK09694 helicase Cas3; Provisional
Probab=89.47 E-value=2.4 Score=39.69 Aligned_cols=74 Identities=14% Similarity=0.268 Sum_probs=49.8
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHH-------HHH-HhcC---CcEEEeCcHHHHHHHHhcC
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADV-------KKI-EEEG---ANLLIGTPGRLYDIMERMD 70 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~-------~~l-~~~~---~~IiV~TP~~l~~~l~~~~ 70 (183)
++|+++|.+-|.++++.+++... ++..+..+.++....+.. +.. +++. ..|+|+|. .++.
T Consensus 563 vLVf~NTV~~Aq~ly~~L~~~~~--~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQ-----ViE~-- 633 (878)
T PRK09694 563 VCLICNLVDDAQKLYQRLKELNN--TQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQ-----VVEQ-- 633 (878)
T ss_pred EEEEECCHHHHHHHHHHHHhhCC--CCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECc-----chhh--
Confidence 78999999999999998886421 246788888886543331 112 1112 36999994 5554
Q ss_pred CcCCCCceEEEEccc
Q 030094 71 VLDFRNLEILVLDEA 85 (183)
Q Consensus 71 ~~~l~~l~~lVvDEa 85 (183)
++|+ ++.++|.|-+
T Consensus 634 GLDI-d~DvlItdla 647 (878)
T PRK09694 634 SLDL-DFDWLITQLC 647 (878)
T ss_pred eeec-CCCeEEECCC
Confidence 6676 4677887754
No 199
>COG4889 Predicted helicase [General function prediction only]
Probab=89.18 E-value=2.3 Score=39.75 Aligned_cols=86 Identities=19% Similarity=0.272 Sum_probs=56.9
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcch-----------------------HHHHH-HHHhcCCcEEEe
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEV-----------------------KADVK-KIEEEGANLLIG 57 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~-----------------------~~~~~-~l~~~~~~IiV~ 57 (183)
.|+|||+-.|-.|..+.-..- +.. +++...+++.... -+... .-+..+--|+.+
T Consensus 209 iL~LvPSIsLLsQTlrew~~~-~~l-~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFs 286 (1518)
T COG4889 209 ILFLVPSISLLSQTLREWTAQ-KEL-DFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFS 286 (1518)
T ss_pred eEeecchHHHHHHHHHHHhhc-cCc-cceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEE
Confidence 589999999999998866654 223 4555555443211 01111 111245679999
Q ss_pred CcHHHHHHHHhcCCcCCCCceEEEEcccchhhc
Q 030094 58 TPGRLYDIMERMDVLDFRNLEILVLDEADRLLD 90 (183)
Q Consensus 58 TP~~l~~~l~~~~~~~l~~l~~lVvDEad~ll~ 90 (183)
|-+.+-..-+. ...-+....++|.||||+-.+
T Consensus 287 TYQSl~~i~eA-Qe~G~~~fDliicDEAHRTtG 318 (1518)
T COG4889 287 TYQSLPRIKEA-QEAGLDEFDLIICDEAHRTTG 318 (1518)
T ss_pred cccchHHHHHH-HHcCCCCccEEEecchhcccc
Confidence 99988776654 455577788999999999764
No 200
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=89.05 E-value=0.37 Score=38.96 Aligned_cols=39 Identities=26% Similarity=0.237 Sum_probs=28.0
Q ss_pred CCcEEEeCcHHHHHHHHh-cCCcCCCCceEEEEcccchhhc
Q 030094 51 GANLLIGTPGRLYDIMER-MDVLDFRNLEILVLDEADRLLD 90 (183)
Q Consensus 51 ~~~IiV~TP~~l~~~l~~-~~~~~l~~l~~lVvDEad~ll~ 90 (183)
.+||||++..-|.+-..+ .-+.++ .-.++|+||||.+-+
T Consensus 211 ~Adivi~ny~yll~~~~r~~~~~~l-~~~~lIiDEAHnL~d 250 (289)
T smart00489 211 FANVVVLPYQYLLDPKIRQALSIEL-KDSIVIFDEAHNLDN 250 (289)
T ss_pred cCCEEEECHHHHhcHHHHHHhcccc-cccEEEEeCccChHH
Confidence 589999999888766533 112344 357999999999864
No 201
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=89.05 E-value=0.37 Score=38.96 Aligned_cols=39 Identities=26% Similarity=0.237 Sum_probs=28.0
Q ss_pred CCcEEEeCcHHHHHHHHh-cCCcCCCCceEEEEcccchhhc
Q 030094 51 GANLLIGTPGRLYDIMER-MDVLDFRNLEILVLDEADRLLD 90 (183)
Q Consensus 51 ~~~IiV~TP~~l~~~l~~-~~~~~l~~l~~lVvDEad~ll~ 90 (183)
.+||||++..-|.+-..+ .-+.++ .-.++|+||||.+-+
T Consensus 211 ~Adivi~ny~yll~~~~r~~~~~~l-~~~~lIiDEAHnL~d 250 (289)
T smart00488 211 FANVVVLPYQYLLDPKIRQALSIEL-KDSIVIFDEAHNLDN 250 (289)
T ss_pred cCCEEEECHHHHhcHHHHHHhcccc-cccEEEEeCccChHH
Confidence 589999999888766533 112344 357999999999864
No 202
>PRK09401 reverse gyrase; Reviewed
Probab=89.04 E-value=1.1 Score=43.18 Aligned_cols=72 Identities=17% Similarity=0.415 Sum_probs=50.7
Q ss_pred CEEEEeCcHHH---HHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCC-
Q 030094 1 MGMIISPTREL---SSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRN- 76 (183)
Q Consensus 1 ~alIl~PtreL---a~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~- 76 (183)
.+||.|||++- |..+.+.++.. ++++..++|+. +.......++..+|+|||... .+.+. .++|+.+
T Consensus 330 ~~LIFv~t~~~~~~ae~l~~~L~~~-----gi~v~~~hg~l--~~~l~~F~~G~~~VLVatas~-tdv~a--RGIDiP~~ 399 (1176)
T PRK09401 330 GGLIFVPSDKGKEYAEELAEYLEDL-----GINAELAISGF--ERKFEKFEEGEVDVLVGVASY-YGVLV--RGIDLPER 399 (1176)
T ss_pred CEEEEEecccChHHHHHHHHHHHHC-----CCcEEEEeCcH--HHHHHHHHCCCCCEEEEecCC-CCcee--ecCCCCcc
Confidence 47999999655 77776665553 78899999987 344566667889999997410 12232 4788877
Q ss_pred ceEEEE
Q 030094 77 LEILVL 82 (183)
Q Consensus 77 l~~lVv 82 (183)
++++|.
T Consensus 400 IryVI~ 405 (1176)
T PRK09401 400 IRYAIF 405 (1176)
T ss_pred eeEEEE
Confidence 788876
No 203
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=88.45 E-value=0.94 Score=42.55 Aligned_cols=84 Identities=12% Similarity=0.211 Sum_probs=59.5
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHH-HHHHHhc-----CCcCCC
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERM-----DVLDFR 75 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l-~~~l~~~-----~~~~l~ 75 (183)
+-|++.+--||..=.+.+..+..++ +++|.++..+.+..+... ..+|||.-||...+ .++++.+ ...-.+
T Consensus 182 VHvVTvNDYLA~RDaewm~p~y~fl-GLtVg~i~~~~~~~~Rr~---aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR 257 (1025)
T PRK12900 182 VHVVTVNDYLAQRDKEWMNPVFEFH-GLSVGVILNTMRPEERRE---QYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQR 257 (1025)
T ss_pred cEEEeechHhhhhhHHHHHHHHHHh-CCeeeeeCCCCCHHHHHH---hCCCcceecCCCccccccchhccccchhhhhcc
Confidence 3467778888988888888888888 999998866555444332 35899999999775 2333321 111236
Q ss_pred CceEEEEcccchhh
Q 030094 76 NLEILVLDEADRLL 89 (183)
Q Consensus 76 ~l~~lVvDEad~ll 89 (183)
..-+.|+||+|.+|
T Consensus 258 ~~~faIVDEvDSvL 271 (1025)
T PRK12900 258 DFYFAIVDEVDSVL 271 (1025)
T ss_pred CCceEEEechhhhh
Confidence 67799999999986
No 204
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=88.36 E-value=2.9 Score=35.23 Aligned_cols=122 Identities=13% Similarity=0.157 Sum_probs=74.8
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
+++|.|.||.-|.-++..+..- +-.+.++.|.....+... ..+.+...|+|+|. .+. +++|...+
T Consensus 332 qsiIFc~tk~ta~~l~~~m~~~-----Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTn-----V~A--RGiDv~qV 399 (477)
T KOG0332|consen 332 QSIIFCHTKATAMWLYEEMRAE-----GHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTN-----VCA--RGIDVAQV 399 (477)
T ss_pred heEEEEeehhhHHHHHHHHHhc-----CceeEEeeccchhHHHHHHHHHHhcCcceEEEEec-----hhh--cccccceE
Confidence 5899999999999998877775 456788888766554433 33345678999995 343 57999999
Q ss_pred eEEEEcccchhhcc----chHHHHHHHHHhCCCCCeEEE---EeecCChHHHHHHHhhCC-CCeEEE
Q 030094 78 EILVLDEADRLLDM----GFQKQISYIISRLPKLRRTGL---FSATQTEAVEELSKAGLR-NPVRVE 136 (183)
Q Consensus 78 ~~lVvDEad~ll~~----~~~~~l~~i~~~l~~~~Q~v~---~SAT~~~~v~~~~~~~~~-~~~~i~ 136 (183)
.++|= .|.=.+. ++..-+.+|-+.=.-.+.-+. .-...+.++.+-+.+|+. ++..+.
T Consensus 400 s~VvN--ydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~ 464 (477)
T KOG0332|consen 400 SVVVN--YDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLD 464 (477)
T ss_pred EEEEe--cCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecC
Confidence 98872 2222221 244444444332111233333 334456666666777774 444443
No 205
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=88.33 E-value=0.58 Score=42.56 Aligned_cols=41 Identities=22% Similarity=0.230 Sum_probs=29.3
Q ss_pred cCCcEEEeCcHHHHHHHHh-cCCcCCC-CceEEEEcccchhhc
Q 030094 50 EGANLLIGTPGRLYDIMER-MDVLDFR-NLEILVLDEADRLLD 90 (183)
Q Consensus 50 ~~~~IiV~TP~~l~~~l~~-~~~~~l~-~l~~lVvDEad~ll~ 90 (183)
..+||||+...-|...+.. .+.+.+. .-..+|+||||++-+
T Consensus 218 ~~AdivVtNH~LLladl~~~~~~iLp~~~~~~lViDEAH~L~d 260 (697)
T PRK11747 218 DEADVVVANHDLVLADLELGGGVVLPDPENLLYVLDEGHHLPD 260 (697)
T ss_pred hhCCEEEECcHHHHhhhhccCCcccCCCCCCEEEEECccchHH
Confidence 4689999999987766642 1233332 457899999999964
No 206
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=88.24 E-value=12 Score=32.30 Aligned_cols=120 Identities=13% Similarity=0.221 Sum_probs=63.6
Q ss_pred EeCcHHHHHHHHHHHHHhhhhCC--CceEEEEEcCcchHH------HHHHHHhcCCcEEEeCcHHHHHHHHh---cCCc-
Q 030094 5 ISPTRELSSQIYHVAQPFISTLP--DVKSVLLVGGVEVKA------DVKKIEEEGANLLIGTPGRLYDIMER---MDVL- 72 (183)
Q Consensus 5 l~PtreLa~Qi~~~~~~l~~~~~--~~~~~~~~g~~~~~~------~~~~l~~~~~~IiV~TP~~l~~~l~~---~~~~- 72 (183)
+-|..++|......+.+-....+ ......++|+..... -...+...+..++..+...+...+.. .+..
T Consensus 115 ~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~ 194 (445)
T PRK12422 115 VTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQ 194 (445)
T ss_pred eCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHH
Confidence 35666666544443332111111 235567887654321 12223334678888887765443321 0111
Q ss_pred ----CCCCceEEEEcccchhhccc-hHHHHHHHHHhC-CCCCeEEEEeecCChHHHHH
Q 030094 73 ----DFRNLEILVLDEADRLLDMG-FQKQISYIISRL-PKLRRTGLFSATQTEAVEEL 124 (183)
Q Consensus 73 ----~l~~l~~lVvDEad~ll~~~-~~~~l~~i~~~l-~~~~Q~v~~SAT~~~~v~~~ 124 (183)
...++.++++||+|.+-+.. ....+-.++..+ ....|+++.|.+.+.++..+
T Consensus 195 ~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 195 RFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM 252 (445)
T ss_pred HHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh
Confidence 15678899999999985432 344555555543 24567777665556555433
No 207
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=88.05 E-value=2.7 Score=38.37 Aligned_cols=75 Identities=17% Similarity=0.250 Sum_probs=55.7
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCc--------chHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcC
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGV--------EVKADVK---KIEEEGANLLIGTPGRLYDIMERMD 70 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~--------~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~ 70 (183)
++|.|-||+.|..+...+..+. .++++...+.|-. +.++|.. ....+..+|+|||. +.. .
T Consensus 416 ~IIFve~R~sa~~l~~~l~~~~--~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATS------V~E-E 486 (746)
T KOG0354|consen 416 TIIFVETRESALALKKWLLQLH--ELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATS------VAE-E 486 (746)
T ss_pred EEEEEehHHHHHHHHHHHHhhh--hcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEec------chh-c
Confidence 7899999999999999998853 2478888888733 3344444 33457799999996 344 6
Q ss_pred CcCCCCceEEEEccc
Q 030094 71 VLDFRNLEILVLDEA 85 (183)
Q Consensus 71 ~~~l~~l~~lVvDEa 85 (183)
++|...|.++|-=++
T Consensus 487 GLDI~ec~lVIcYd~ 501 (746)
T KOG0354|consen 487 GLDIGECNLVICYDY 501 (746)
T ss_pred cCCcccccEEEEecC
Confidence 899999999885443
No 208
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=87.82 E-value=3.3 Score=33.74 Aligned_cols=69 Identities=14% Similarity=0.211 Sum_probs=50.8
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
||+|.|.||.-+.-..+-++. . ++.+.+..|....++... ....+...|+|+|- . +. +++|...+
T Consensus 268 QavIFcnTk~kVdwLtekm~~----~-nftVssmHGDm~qkERd~im~dFRsg~SrvLitTD-----V-wa-RGiDv~qV 335 (400)
T KOG0328|consen 268 QAVIFCNTKRKVDWLTEKMRE----A-NFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTD-----V-WA-RGIDVQQV 335 (400)
T ss_pred eEEEEecccchhhHHHHHHHh----h-CceeeeccCCcchhHHHHHHHHhhcCCceEEEEec-----h-hh-ccCCccee
Confidence 689999999887765554433 2 688899999877655533 44556789999995 3 34 68999999
Q ss_pred eEEE
Q 030094 78 EILV 81 (183)
Q Consensus 78 ~~lV 81 (183)
.++|
T Consensus 336 slvi 339 (400)
T KOG0328|consen 336 SLVI 339 (400)
T ss_pred EEEE
Confidence 8887
No 209
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=87.36 E-value=2 Score=39.15 Aligned_cols=106 Identities=19% Similarity=0.236 Sum_probs=64.0
Q ss_pred EEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHH--------HhcCCcEEEeCcHHHHHHHHhcCCcCC
Q 030094 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKI--------EEEGANLLIGTPGRLYDIMERMDVLDF 74 (183)
Q Consensus 3 lIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l--------~~~~~~IiV~TP~~l~~~l~~~~~~~l 74 (183)
||++|. .-.......+++++|++++.-.-|+..-....+.. ...+.||+|+|-+.+..-- +.+.-
T Consensus 621 LVVtpa----StL~NWaqEisrFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDe---ky~qk 693 (1185)
T KOG0388|consen 621 LVVTPA----STLHNWAQEISRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDE---KYLQK 693 (1185)
T ss_pred EEeehH----HHHhHHHHHHHHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechH---HHHHh
Confidence 677774 44566777788888999999888876644333321 2357899999987653211 11212
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCC
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~ 118 (183)
-..++.|+|||..+=+.. ....+.++.- +-+-.++++.|.-
T Consensus 694 vKWQYMILDEAQAIKSSs-S~RWKtLLsF--~cRNRLLLTGTPI 734 (1185)
T KOG0388|consen 694 VKWQYMILDEAQAIKSSS-SSRWKTLLSF--KCRNRLLLTGTPI 734 (1185)
T ss_pred hhhhheehhHHHHhhhhh-hhHHHHHhhh--hccceeeecCCcc
Confidence 235689999998875432 3333333332 2233566677753
No 210
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=87.05 E-value=2.5 Score=31.90 Aligned_cols=35 Identities=20% Similarity=0.456 Sum_probs=21.5
Q ss_pred cCCcEEEeCcHHHHHHHHhcCCcC-C-CCceEEEEcccchhh
Q 030094 50 EGANLLIGTPGRLYDIMERMDVLD-F-RNLEILVLDEADRLL 89 (183)
Q Consensus 50 ~~~~IiV~TP~~l~~~l~~~~~~~-l-~~l~~lVvDEad~ll 89 (183)
..++|+++|+..... ..+. . ...+++|+|||-++.
T Consensus 169 ~~~~vi~~T~~~~~~-----~~~~~~~~~~d~vIvDEAsq~~ 205 (236)
T PF13086_consen 169 KEADVIFTTLSSAAS-----PFLSNFKEKFDVVIVDEASQIT 205 (236)
T ss_dssp HT-SEEEEETCGGG------CCGTT-----SEEEETTGGGS-
T ss_pred ccccccccccccchh-----hHhhhhcccCCEEEEeCCCCcc
Confidence 469999999976622 2222 2 278899999998874
No 211
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=86.83 E-value=0.91 Score=42.28 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=46.1
Q ss_pred eEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCC
Q 030094 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLR 130 (183)
Q Consensus 78 ~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~ 130 (183)
.+.++||+|.-|+..+...+..+++.+....|+|. .||-|++...+.+|+.
T Consensus 1121 PFYlfDEIDAaLDaQyR~aVa~lIkelS~~aQFI~--TTFRpEll~vAdKfyg 1171 (1200)
T KOG0964|consen 1121 PFYLFDEIDAALDAQYRTAVADLIKELSDSAQFIT--TTFRPELLSVADKFYG 1171 (1200)
T ss_pred chhhHhHHhhhccHHHHHHHHHHHHHHhhccceEe--ecccHHHHHHHHhhhc
Confidence 38899999999999999999999999998888775 6899999999999865
No 212
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=86.58 E-value=1.1 Score=36.62 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=38.2
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCC---hHHHHHHHhh
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT---EAVEELSKAG 128 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~---~~v~~~~~~~ 128 (183)
..-+.+|+||||.|... -+..+.+.++..++...+++...-++ ..+..-+.+|
T Consensus 128 ~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~Kf 183 (346)
T KOG0989|consen 128 PPFKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKF 183 (346)
T ss_pred CcceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHh
Confidence 34489999999999754 57788888888888888888766543 3444444444
No 213
>PRK05642 DNA replication initiation factor; Validated
Probab=86.12 E-value=9.6 Score=29.68 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=41.5
Q ss_pred cCCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEcccchhhcc-chHHHHHHHHHhCCCCCeEEEEeecCCh
Q 030094 50 EGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDM-GFQKQISYIISRLPKLRRTGLFSATQTE 119 (183)
Q Consensus 50 ~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEad~ll~~-~~~~~l~~i~~~l~~~~Q~v~~SAT~~~ 119 (183)
.+..++.-+...+...... -.-.+.++.++++|++|.+-.. .....+-++++.+......++++++.++
T Consensus 72 ~~~~v~y~~~~~~~~~~~~-~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 72 RGEPAVYLPLAELLDRGPE-LLDNLEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred CCCcEEEeeHHHHHhhhHH-HHHhhhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 4677887777776643221 0012556789999999987543 3456677777766543333455555544
No 214
>PRK01172 ski2-like helicase; Provisional
Probab=86.02 E-value=6.4 Score=35.62 Aligned_cols=77 Identities=6% Similarity=0.157 Sum_probs=49.3
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCC--------------------ceEEEEEcCcchHHHHH---HHHhcCCcEEEe
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPD--------------------VKSVLLVGGVEVKADVK---KIEEEGANLLIG 57 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~--------------------~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~ 57 (183)
++||.||||.-|..+.+.+.+.....+. ..+...+||.+..++.. ...++...|+||
T Consensus 238 ~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLva 317 (674)
T PRK01172 238 QVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVA 317 (674)
T ss_pred cEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEe
Confidence 4799999999999888877665332111 13566777776554433 233467899999
Q ss_pred CcHHHHHHHHhcCCcCCCCceEEEEccc
Q 030094 58 TPGRLYDIMERMDVLDFRNLEILVLDEA 85 (183)
Q Consensus 58 TP~~l~~~l~~~~~~~l~~l~~lVvDEa 85 (183)
|. .+. .++|+... .+|++..
T Consensus 318 T~-----~la--~Gvnipa~-~VII~~~ 337 (674)
T PRK01172 318 TP-----TLA--AGVNLPAR-LVIVRDI 337 (674)
T ss_pred cc-----hhh--ccCCCcce-EEEEcCc
Confidence 96 333 35776554 5566544
No 215
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=85.97 E-value=1.7 Score=32.49 Aligned_cols=54 Identities=17% Similarity=0.258 Sum_probs=45.7
Q ss_pred CCCceEEEEcccchhhccch--HHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHh
Q 030094 74 FRNLEILVLDEADRLLDMGF--QKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~--~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~ 127 (183)
-...+++|+||+-..++.++ .+.+..+++..|...-+|+.+-..|+++.+.++.
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~ 150 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADL 150 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCce
Confidence 35678999999999888774 5688888998888889999999999988888775
No 216
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=85.94 E-value=1.2 Score=36.33 Aligned_cols=58 Identities=16% Similarity=0.252 Sum_probs=43.9
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCC-------CCCeEEEEeecCChHHHHHHHhhCCCC
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLP-------KLRRTGLFSATQTEAVEELSKAGLRNP 132 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~-------~~~Q~v~~SAT~~~~v~~~~~~~~~~~ 132 (183)
...=.++|+||+|.| ..+..+.+.-.++..| ++.-.|+.|.+-..++.+++-.++++.
T Consensus 176 ~C~rslFIFDE~DKm-p~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~~~g 240 (344)
T KOG2170|consen 176 ACQRSLFIFDEVDKL-PPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIALENARNG 240 (344)
T ss_pred hcCCceEEechhhhc-CHhHHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHHHHHHHcC
Confidence 334468999999998 3466777777777654 356789999999999998888776643
No 217
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=85.68 E-value=1.9 Score=34.18 Aligned_cols=44 Identities=23% Similarity=0.291 Sum_probs=33.3
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCC
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~ 118 (183)
..+-+.+|+||||.|.+ |-.+.+++-++...+.+++.+...+..
T Consensus 111 ~grhKIiILDEADSMT~-gAQQAlRRtMEiyS~ttRFalaCN~s~ 154 (333)
T KOG0991|consen 111 PGRHKIIILDEADSMTA-GAQQALRRTMEIYSNTTRFALACNQSE 154 (333)
T ss_pred CCceeEEEeeccchhhh-HHHHHHHHHHHHHcccchhhhhhcchh
Confidence 46678999999999975 567788888888877777666555444
No 218
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=85.44 E-value=4.8 Score=37.01 Aligned_cols=85 Identities=21% Similarity=0.292 Sum_probs=52.0
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCce-EEEEEcCcch----HHHHHHHHhcC----CcEEEeCcHHHHHHHHhcCCc
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVK-SVLLVGGVEV----KADVKKIEEEG----ANLLIGTPGRLYDIMERMDVL 72 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~-~~~~~g~~~~----~~~~~~l~~~~----~~IiV~TP~~l~~~l~~~~~~ 72 (183)
++|+||+.-+ .+..+.+.++ .|.++ +....|.... .+....+.... .+++++|-+.+.........+
T Consensus 393 ~liv~p~s~~-~nw~~e~~k~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l 468 (866)
T COG0553 393 ALIVVPASLL-SNWKREFEKF---APDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGL 468 (866)
T ss_pred eEEEecHHHH-HHHHHHHhhh---CccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHH
Confidence 5788886554 4444555444 45666 6666765541 33444443322 799999998887732111234
Q ss_pred CCCCceEEEEcccchhhc
Q 030094 73 DFRNLEILVLDEADRLLD 90 (183)
Q Consensus 73 ~l~~l~~lVvDEad~ll~ 90 (183)
.-.....+|+||||.+-+
T Consensus 469 ~~~~~~~~v~DEa~~ikn 486 (866)
T COG0553 469 KKIEWDRVVLDEAHRIKN 486 (866)
T ss_pred hhceeeeeehhhHHHHhh
Confidence 445567899999999644
No 219
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=85.39 E-value=4.8 Score=39.23 Aligned_cols=71 Identities=10% Similarity=0.177 Sum_probs=54.4
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHh-cCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEE-EGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
+||.+|+++-+..+.+.+++. ..+...+..++|+.+..++.+.... ++..|||+|. ..+ .++++.+++++
T Consensus 289 ILVFLpg~~EIe~lae~L~~~--~~~~~~VlpLhg~Ls~~eQ~~Vf~~~g~rkIIVATN-----IAE--tSITIpgI~yV 359 (1294)
T PRK11131 289 ILIFMSGEREIRDTADALNKL--NLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATN-----VAE--TSLTVPGIKYV 359 (1294)
T ss_pred EEEEcCCHHHHHHHHHHHHhc--CCCcceEeecccCCCHHHHHHHhcccCCeeEEEecc-----HHh--hccccCcceEE
Confidence 689999999999888877764 3345667788998887777665542 3568999996 444 57999999988
Q ss_pred E
Q 030094 81 V 81 (183)
Q Consensus 81 V 81 (183)
|
T Consensus 360 I 360 (1294)
T PRK11131 360 I 360 (1294)
T ss_pred E
Confidence 7
No 220
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=85.14 E-value=2.2 Score=31.46 Aligned_cols=54 Identities=15% Similarity=0.236 Sum_probs=45.2
Q ss_pred CCCceEEEEcccchhhccch--HHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHh
Q 030094 74 FRNLEILVLDEADRLLDMGF--QKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~--~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~ 127 (183)
....+++|+||+-..++.++ .+.+..+++..|...-+|+.+-..|+++.+.++.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~ 148 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADL 148 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCce
Confidence 46778999999998877664 6788888998888888999999999888887764
No 221
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=85.06 E-value=5.9 Score=36.80 Aligned_cols=65 Identities=23% Similarity=0.226 Sum_probs=44.9
Q ss_pred cCCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEcccchhhccchHHHHHHHHHh-------CCC------CCeEEEEeec
Q 030094 50 EGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISR-------LPK------LRRTGLFSAT 116 (183)
Q Consensus 50 ~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEad~ll~~~~~~~l~~i~~~-------l~~------~~Q~v~~SAT 116 (183)
....|-+-|-|.|++=|.+ .+-++.-+.+|+||||.=- . +-+-+-.++.+ ..+ .-..|++|||
T Consensus 348 e~T~IkFMTDGVLLrEi~~--DflL~kYSvIIlDEAHERS-v-nTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSAT 423 (1172)
T KOG0926|consen 348 EDTSIKFMTDGVLLREIEN--DFLLTKYSVIILDEAHERS-V-NTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSAT 423 (1172)
T ss_pred CCceeEEecchHHHHHHHH--hHhhhhceeEEechhhhcc-c-hHHHHHHHHHHHHHHHHHHhhhhcccCceeEEEEeee
Confidence 3567999999999998876 6889999999999999731 1 12222222222 222 2358999999
Q ss_pred CC
Q 030094 117 QT 118 (183)
Q Consensus 117 ~~ 118 (183)
+-
T Consensus 424 LR 425 (1172)
T KOG0926|consen 424 LR 425 (1172)
T ss_pred EE
Confidence 84
No 222
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=84.86 E-value=6.5 Score=38.97 Aligned_cols=75 Identities=9% Similarity=0.160 Sum_probs=49.0
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhh----------------------------CCCceEEEEEcCcchHHHHH---HHHh
Q 030094 1 MGMIISPTRELSSQIYHVAQPFIST----------------------------LPDVKSVLLVGGVEVKADVK---KIEE 49 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~----------------------------~~~~~~~~~~g~~~~~~~~~---~l~~ 49 (183)
.+||.|+||..|..+...++++... .+...+....|+.+.++... .+++
T Consensus 246 stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~ 325 (1490)
T PRK09751 246 STIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKS 325 (1490)
T ss_pred CEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHh
Confidence 3699999999999999888776320 00112445567766544433 4455
Q ss_pred cCCcEEEeCcHHHHHHHHhcCCcCCCCceEEEE
Q 030094 50 EGANLLIGTPGRLYDIMERMDVLDFRNLEILVL 82 (183)
Q Consensus 50 ~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVv 82 (183)
+...++|||. .+.. ++|+..++++|.
T Consensus 326 G~LrvLVATs-----sLEL--GIDIg~VDlVIq 351 (1490)
T PRK09751 326 GELRCVVATS-----SLEL--GIDMGAVDLVIQ 351 (1490)
T ss_pred CCceEEEeCc-----HHHc--cCCcccCCEEEE
Confidence 6678888886 3433 677777777775
No 223
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=84.84 E-value=5.4 Score=38.89 Aligned_cols=71 Identities=13% Similarity=0.196 Sum_probs=55.0
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhc-CCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEE-GANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
+||.+|+++-+.++.+.+.+.. .+++.+..++|+.+..++.+..... +-.|||+|. ..+ .++++.+++++
T Consensus 282 ILVFLpg~~EI~~l~~~L~~~~--~~~~~VlpLhg~Ls~~eQ~~vf~~~~~rkIVLATN-----IAE--tSLTIpgV~yV 352 (1283)
T TIGR01967 282 ILIFLPGEREIRDAAEILRKRN--LRHTEILPLYARLSNKEQQRVFQPHSGRRIVLATN-----VAE--TSLTVPGIHYV 352 (1283)
T ss_pred EEEeCCCHHHHHHHHHHHHhcC--CCCcEEEeccCCCCHHHHHHHhCCCCCceEEEecc-----HHH--hccccCCeeEE
Confidence 6899999999998888887642 3467888899998888877766433 358999996 443 57899999987
Q ss_pred E
Q 030094 81 V 81 (183)
Q Consensus 81 V 81 (183)
|
T Consensus 353 I 353 (1283)
T TIGR01967 353 I 353 (1283)
T ss_pred E
Confidence 6
No 224
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=84.75 E-value=2.2 Score=36.95 Aligned_cols=104 Identities=14% Similarity=0.185 Sum_probs=55.8
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHh-cCCcCCCCceEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-MDVLDFRNLEIL 80 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~-~~~~~l~~l~~l 80 (183)
.++.+++++-|..+++.+.++....|.++...-. .. .....-.|.....+.....+.. .+..+=.+..++
T Consensus 57 i~~~A~~~~QA~~~f~~~~~~i~~~~~l~~~~~~-------~~--~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~ 127 (477)
T PF03354_consen 57 IYCAANTRDQAKIVFDEAKKMIEASPELRKRKKP-------KI--IKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLA 127 (477)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHhChhhccchhh-------hh--hhhhceEEEEcCCCcEEEEEecCCCCccCCCCceE
Confidence 5688999999999999999998876544421100 00 0001112222221222222211 123332346899
Q ss_pred EEcccchhhccchHHHHHHHHHhCCCCCeEEEEee
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SA 115 (183)
|+||+|..-+....+.+..-... .+++|++..|.
T Consensus 128 i~DE~h~~~~~~~~~~l~~g~~~-r~~pl~~~IST 161 (477)
T PF03354_consen 128 IFDELHAHKDDELYDALESGMGA-RPNPLIIIIST 161 (477)
T ss_pred EEeCCCCCCCHHHHHHHHhhhcc-CCCceEEEEeC
Confidence 99999998553334444433333 24677777654
No 225
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=84.71 E-value=15 Score=27.74 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=24.9
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCC-CCeEEEEeec
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLFSAT 116 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~-~~Q~v~~SAT 116 (183)
+....++|+|||..+- ...+..+++..+. ..++++++=.
T Consensus 91 ~~~~~vliVDEasmv~----~~~~~~ll~~~~~~~~klilvGD~ 130 (196)
T PF13604_consen 91 LPKKDVLIVDEASMVD----SRQLARLLRLAKKSGAKLILVGDP 130 (196)
T ss_dssp -TSTSEEEESSGGG-B----HHHHHHHHHHS-T-T-EEEEEE-T
T ss_pred CCcccEEEEecccccC----HHHHHHHHHHHHhcCCEEEEECCc
Confidence 4455799999998862 4567777777765 6677776543
No 226
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=84.41 E-value=0.74 Score=34.60 Aligned_cols=96 Identities=18% Similarity=0.273 Sum_probs=36.9
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
++|-+|+.+=+..+++.+..-.+.. +.+. ...........+...+..|-.-.|..+...- ...+++|
T Consensus 29 I~vtAP~~~~~~~lf~~~~~~l~~~-~~~~----~~~~~~~~~~~~~~~~~~i~f~~Pd~l~~~~--------~~~Dlli 95 (177)
T PF05127_consen 29 ILVTAPSPENVQTLFEFAEKGLKAL-GYKE----EKKKRIGQIIKLRFNKQRIEFVAPDELLAEK--------PQADLLI 95 (177)
T ss_dssp EEEE-SS--S-HHHHHCC-------------------------------CCC--B--HHHHCCT------------SCEE
T ss_pred EEEecCCHHHHHHHHHHHHhhcccc-cccc----ccccccccccccccccceEEEECCHHHHhCc--------CCCCEEE
Confidence 4677788888877777555443322 2221 0000000111111224455555664433221 1247999
Q ss_pred EcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCC
Q 030094 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (183)
Q Consensus 82 vDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~ 118 (183)
||||=.+ -.+.+..+++..+ .++||.|..
T Consensus 96 VDEAAaI----p~p~L~~ll~~~~----~vv~stTi~ 124 (177)
T PF05127_consen 96 VDEAAAI----PLPLLKQLLRRFP----RVVFSTTIH 124 (177)
T ss_dssp ECTGGGS-----HHHHHHHHCCSS----EEEEEEEBS
T ss_pred EechhcC----CHHHHHHHHhhCC----EEEEEeecc
Confidence 9999665 2556666654333 467788874
No 227
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=84.29 E-value=1.4 Score=36.01 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=28.7
Q ss_pred CCCceEEEEcccchhhccch--HHHHHHHHHhCCCCCeEEEEee
Q 030094 74 FRNLEILVLDEADRLLDMGF--QKQISYIISRLPKLRRTGLFSA 115 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~--~~~l~~i~~~l~~~~Q~v~~SA 115 (183)
--.++++|+||.|.++..+. ...+...++.+.+.-|+-++.+
T Consensus 143 ~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~v 186 (302)
T PF05621_consen 143 RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGV 186 (302)
T ss_pred HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEe
Confidence 35679999999999987553 3455566777766666444433
No 228
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=84.15 E-value=2.4 Score=32.25 Aligned_cols=55 Identities=15% Similarity=0.230 Sum_probs=46.4
Q ss_pred CCCceEEEEcccchhhccch--HHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhh
Q 030094 74 FRNLEILVLDEADRLLDMGF--QKQISYIISRLPKLRRTGLFSATQTEAVEELSKAG 128 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~--~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~ 128 (183)
-...+++|+||+-..++.++ .+++..+++..|...-+|+.+-..|+++.+.++..
T Consensus 113 ~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADlV 169 (191)
T PRK05986 113 DESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADLV 169 (191)
T ss_pred CCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCchh
Confidence 45678999999999988875 67888888988888899999998999988887753
No 229
>PRK13766 Hef nuclease; Provisional
Probab=83.81 E-value=8.1 Score=35.52 Aligned_cols=83 Identities=18% Similarity=0.306 Sum_probs=55.6
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcC--------cchHHH---HHHHHhcCCcEEEeCcHHHHHHHHhcC
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGG--------VEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMD 70 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~--------~~~~~~---~~~l~~~~~~IiV~TP~~l~~~l~~~~ 70 (183)
+||.|+++.-|.++++.+... ++++..+.|. .+..++ ......+..+++|+|. .. . .
T Consensus 368 vlIF~~~~~t~~~L~~~L~~~-----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~-----~~-~-e 435 (773)
T PRK13766 368 IIVFTQYRDTAEKIVDLLEKE-----GIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTS-----VA-E-E 435 (773)
T ss_pred EEEEeCcHHHHHHHHHHHHhC-----CCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECC-----hh-h-c
Confidence 699999999999999988553 4556666664 222222 2233345689999997 22 3 5
Q ss_pred CcCCCCceEEEEcccchhhccchHHHHHHH
Q 030094 71 VLDFRNLEILVLDEADRLLDMGFQKQISYI 100 (183)
Q Consensus 71 ~~~l~~l~~lVvDEad~ll~~~~~~~l~~i 100 (183)
++|+.++.++|+=+.+. ++...++.+
T Consensus 436 Gldi~~~~~VI~yd~~~----s~~r~iQR~ 461 (773)
T PRK13766 436 GLDIPSVDLVIFYEPVP----SEIRSIQRK 461 (773)
T ss_pred CCCcccCCEEEEeCCCC----CHHHHHHHh
Confidence 78999999999866543 344444433
No 230
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=83.77 E-value=1.8 Score=40.95 Aligned_cols=85 Identities=15% Similarity=0.170 Sum_probs=58.8
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHH-HHHHHhc-----CCcCCC
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERM-----DVLDFR 75 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l-~~~l~~~-----~~~~l~ 75 (183)
+-|++.+--||..=.+.+..+..++ ++++.++.......++.+. ...|||.=||...+ .++++.+ ...-.+
T Consensus 213 VHvVTVNDYLA~RDaewmgply~fL-GLsvg~i~~~~~~~~~rr~--aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR 289 (1112)
T PRK12901 213 VHVVTVNDYLAKRDSEWMGPLYEFH-GLSVDCIDKHQPNSEARRK--AYNADITYGTNNEFGFDYLRDNMAHSPEDLVQR 289 (1112)
T ss_pred cEEEEechhhhhccHHHHHHHHHHh-CCceeecCCCCCCHHHHHH--hCCCcceecCCCccccccchhccccchHhhhCc
Confidence 3467778888988888888888888 9999987663333333333 25799999998765 2333321 112246
Q ss_pred CceEEEEcccchhh
Q 030094 76 NLEILVLDEADRLL 89 (183)
Q Consensus 76 ~l~~lVvDEad~ll 89 (183)
...+.|+||+|.+|
T Consensus 290 ~~~fAIVDEvDSIL 303 (1112)
T PRK12901 290 KHNYAIVDEVDSVL 303 (1112)
T ss_pred CCceeEeechhhhh
Confidence 67899999999986
No 231
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=83.77 E-value=7.3 Score=35.36 Aligned_cols=76 Identities=21% Similarity=0.125 Sum_probs=48.3
Q ss_pred EEEeCcHHHHHHHHhcCCcCCCCceEEEEcccchh-hccc-hHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCC
Q 030094 54 LLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRL-LDMG-FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRN 131 (183)
Q Consensus 54 IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEad~l-l~~~-~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~ 131 (183)
|=.-|-|.|++=+- ...++.+-+.+++||||.= ++.+ .-..+..|++. .++-..++.|||+.. +.|...|-.-
T Consensus 358 lKYMTDGmLlREfL--~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~-RpdLKllIsSAT~DA--ekFS~fFDda 432 (902)
T KOG0923|consen 358 LKYMTDGMLLREFL--SEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARF-RPDLKLLISSATMDA--EKFSAFFDDA 432 (902)
T ss_pred eeeecchhHHHHHh--ccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhh-CCcceEEeeccccCH--HHHHHhccCC
Confidence 44678888776654 4678999999999999973 1111 22334444433 357789999999983 3444444334
Q ss_pred CeE
Q 030094 132 PVR 134 (183)
Q Consensus 132 ~~~ 134 (183)
|++
T Consensus 433 pIF 435 (902)
T KOG0923|consen 433 PIF 435 (902)
T ss_pred cEE
Confidence 443
No 232
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=83.62 E-value=6 Score=35.39 Aligned_cols=37 Identities=27% Similarity=0.380 Sum_probs=29.2
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEe
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~S 114 (183)
...++++|+|||.++ + ...+..+++.++..+++|+++
T Consensus 257 ~l~~dvlIiDEaSMv-d---~~l~~~ll~al~~~~rlIlvG 293 (586)
T TIGR01447 257 PLPLDVLVVDEASMV-D---LPLMAKLLKALPPNTKLILLG 293 (586)
T ss_pred CCcccEEEEcccccC-C---HHHHHHHHHhcCCCCEEEEEC
Confidence 446789999999775 3 457778889998888888865
No 233
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=83.56 E-value=2.5 Score=31.78 Aligned_cols=54 Identities=15% Similarity=0.251 Sum_probs=45.6
Q ss_pred CCCceEEEEcccchhhccch--HHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHh
Q 030094 74 FRNLEILVLDEADRLLDMGF--QKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~--~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~ 127 (183)
-....++|+||+-..++.++ .+.+..+++..|...-+|+.+-..|+++.+.++.
T Consensus 113 ~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD~ 168 (178)
T PRK07414 113 EGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIADQ 168 (178)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCCe
Confidence 35678999999999988875 6788889999888889999999999888877764
No 234
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=83.23 E-value=6.9 Score=35.21 Aligned_cols=37 Identities=30% Similarity=0.439 Sum_probs=29.2
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEe
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~S 114 (183)
+-..+++|+|||.++ + ...+..+++.+++.+++|+++
T Consensus 263 ~l~~dvlIvDEaSMv-d---~~lm~~ll~al~~~~rlIlvG 299 (615)
T PRK10875 263 PLHLDVLVVDEASMV-D---LPMMARLIDALPPHARVIFLG 299 (615)
T ss_pred CCCCCeEEEChHhcc-c---HHHHHHHHHhcccCCEEEEec
Confidence 445689999999775 3 567778889999888888865
No 235
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=82.84 E-value=2.4 Score=31.69 Aligned_cols=55 Identities=16% Similarity=0.301 Sum_probs=40.0
Q ss_pred CCCCceEEEEcccchhhccch--HHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHh
Q 030094 73 DFRNLEILVLDEADRLLDMGF--QKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (183)
Q Consensus 73 ~l~~l~~lVvDEad~ll~~~~--~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~ 127 (183)
.-....++|+||+-..++.++ .+++..+++.-|...-+|+..-..|+++.+.++.
T Consensus 93 ~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~ADl 149 (172)
T PF02572_consen 93 SSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAADL 149 (172)
T ss_dssp T-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-SE
T ss_pred hCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCCe
Confidence 346788999999999988775 6788889998888899999999999998888774
No 236
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=82.63 E-value=8.9 Score=36.36 Aligned_cols=73 Identities=15% Similarity=0.247 Sum_probs=53.7
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHH---Hh--cCCcEEEeCcHHHHHHHHhcCCcCCCC
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKI---EE--EGANLLIGTPGRLYDIMERMDVLDFRN 76 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l---~~--~~~~IiV~TP~~l~~~l~~~~~~~l~~ 76 (183)
+||+|.+++-+..+.+.++... ++++..+.|+.+..+..+.+ .. +++.|+|+|- . -. .++|+..
T Consensus 496 vLVF~~~~~t~~~L~~~L~~~~----Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTd-----v-gs-eGlNlq~ 564 (956)
T PRK04914 496 VLVICAKAATALQLEQALRERE----GIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSE-----I-GS-EGRNFQF 564 (956)
T ss_pred EEEEeCcHHHHHHHHHHHhhcc----CeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEech-----h-hc-cCCCccc
Confidence 6899999999999998775431 67889999998766554433 22 3689999993 2 23 5789988
Q ss_pred ceEEEEccc
Q 030094 77 LEILVLDEA 85 (183)
Q Consensus 77 l~~lVvDEa 85 (183)
+..+|.=+.
T Consensus 565 a~~VInfDl 573 (956)
T PRK04914 565 ASHLVLFDL 573 (956)
T ss_pred ccEEEEecC
Confidence 888875444
No 237
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=81.71 E-value=5.8 Score=33.36 Aligned_cols=70 Identities=14% Similarity=0.256 Sum_probs=51.2
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcc---hHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVE---VKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~---~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
|++|++.||+-+.++...+.+. +.++.++.|... .+...+..+.+...++|.|- ++. .++|+.++
T Consensus 265 q~~if~nt~r~v~~l~~~L~~~-----~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttd-----l~a--rgidv~~~ 332 (397)
T KOG0327|consen 265 QAVIFCNTRRKVDNLTDKLRAH-----GFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTD-----LLA--RGIDVQQV 332 (397)
T ss_pred cceEEecchhhHHHHHHHHhhC-----CceEEEeecccchhhhhHHHHHhhcCCceEEeecc-----ccc--cccchhhc
Confidence 6899999999999888876433 677777777654 33444555567788999983 443 57899998
Q ss_pred eEEEE
Q 030094 78 EILVL 82 (183)
Q Consensus 78 ~~lVv 82 (183)
..+|-
T Consensus 333 slvin 337 (397)
T KOG0327|consen 333 SLVVN 337 (397)
T ss_pred ceeee
Confidence 88873
No 238
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=81.62 E-value=2 Score=41.51 Aligned_cols=67 Identities=19% Similarity=0.339 Sum_probs=51.0
Q ss_pred hcCCcEEEeCcHHHHHHHHhc--C------------CcCCCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEe
Q 030094 49 EEGANLLIGTPGRLYDIMERM--D------------VLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (183)
Q Consensus 49 ~~~~~IiV~TP~~l~~~l~~~--~------------~~~l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~S 114 (183)
..|..|.+..|+.=..-+... | -+.++...|.|+||+|.-+|......+..++..+.++.|+|+.|
T Consensus 1047 ~~Giei~a~ppgK~~~~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s~~sQFIvIT 1126 (1163)
T COG1196 1047 TAGIEISARPPGKKLQSLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQFIVIT 1126 (1163)
T ss_pred hcCcEEEEECCCCCccchhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhCcCCeEEEEE
Confidence 468899999998744322210 1 11246677999999999999888899999999999999999986
Q ss_pred e
Q 030094 115 A 115 (183)
Q Consensus 115 A 115 (183)
-
T Consensus 1127 h 1127 (1163)
T COG1196 1127 H 1127 (1163)
T ss_pred c
Confidence 4
No 239
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=80.80 E-value=22 Score=26.92 Aligned_cols=45 Identities=11% Similarity=0.254 Sum_probs=26.6
Q ss_pred CCceEEEEcccchhhcc-chHHHHHHHHHhCCCCCeEEEEeecCCh
Q 030094 75 RNLEILVLDEADRLLDM-GFQKQISYIISRLPKLRRTGLFSATQTE 119 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~-~~~~~l~~i~~~l~~~~Q~v~~SAT~~~ 119 (183)
...+++++||+|.+-.. +....+..+++........++++++.++
T Consensus 89 ~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~ 134 (226)
T TIGR03420 89 EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAP 134 (226)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCCh
Confidence 44578999999997532 2355666666554322224555665443
No 240
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=80.72 E-value=13 Score=32.60 Aligned_cols=73 Identities=16% Similarity=0.341 Sum_probs=53.0
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEc--------CcchHHHHHH---HHhcCCcEEEeCcHHHHHHHHhcC
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVG--------GVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMD 70 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g--------~~~~~~~~~~---l~~~~~~IiV~TP~~l~~~l~~~~ 70 (183)
++|.+..|+-|..+.+.+.+.+ +..+ ..++| |.+-++|... .+.+.++++|+|. +.. .
T Consensus 369 vIVFT~yRdTae~i~~~L~~~~---~~~~-~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTS------VgE-E 437 (542)
T COG1111 369 VIVFTEYRDTAEEIVNFLKKIG---IKAR-VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATS------VGE-E 437 (542)
T ss_pred EEEEehhHhHHHHHHHHHHhcC---Ccce-eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcc------ccc-c
Confidence 6889999999999888877764 2444 34555 2334455443 3346799999996 445 7
Q ss_pred CcCCCCceEEEEccc
Q 030094 71 VLDFRNLEILVLDEA 85 (183)
Q Consensus 71 ~~~l~~l~~lVvDEa 85 (183)
++|.-.++++|+=|+
T Consensus 438 GLDIp~vDlVifYEp 452 (542)
T COG1111 438 GLDIPEVDLVIFYEP 452 (542)
T ss_pred cCCCCcccEEEEecC
Confidence 899999999998877
No 241
>PRK06893 DNA replication initiation factor; Validated
Probab=80.67 E-value=4.2 Score=31.55 Aligned_cols=47 Identities=15% Similarity=0.250 Sum_probs=31.6
Q ss_pred CCCceEEEEcccchhhcc-chHHHHHHHHHhCCC-CCeEEEEeecCChH
Q 030094 74 FRNLEILVLDEADRLLDM-GFQKQISYIISRLPK-LRRTGLFSATQTEA 120 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~-~~~~~l~~i~~~l~~-~~Q~v~~SAT~~~~ 120 (183)
+.+.+++++||+|.+... .+...+.++++.... +.+++++|++.++.
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 567789999999998643 234456666665543 45667788877555
No 242
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=80.65 E-value=10 Score=35.44 Aligned_cols=70 Identities=17% Similarity=0.150 Sum_probs=47.2
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHH--------HHHHh----c-------CCcEEEeCcHH
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADV--------KKIEE----E-------GANLLIGTPGR 61 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~--------~~l~~----~-------~~~IiV~TP~~ 61 (183)
.+||+|+|++-|..+++.+++. ++ ..+.|+....+.. +...+ + ++.|+|||
T Consensus 274 ~vLVF~NTv~~Aq~L~~~L~~~-----g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVAT--- 343 (844)
T TIGR02621 274 AILVFCRTVKHVRKVFAKLPKE-----KF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCT--- 343 (844)
T ss_pred cEEEEECCHHHHHHHHHHHHhc-----CC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEecc---
Confidence 3799999999999999988764 33 6777776654433 11211 1 26899999
Q ss_pred HHHHHHhcCCcCCCCceEEEEccc
Q 030094 62 LYDIMERMDVLDFRNLEILVLDEA 85 (183)
Q Consensus 62 l~~~l~~~~~~~l~~l~~lVvDEa 85 (183)
+.+.. ++|++. ..+|.|.+
T Consensus 344 --dVaer--GLDId~-d~VI~d~a 362 (844)
T TIGR02621 344 --SAGEV--GVNISA-DHLVCDLA 362 (844)
T ss_pred --chhhh--cccCCc-ceEEECCC
Confidence 45554 677765 67777644
No 243
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=80.01 E-value=3.7 Score=33.21 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=29.4
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEee
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SA 115 (183)
..-+++++||+|.+-.......+..+++..+..+++++.+.
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 35689999999998333345677777887777777776554
No 244
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=79.94 E-value=3.8 Score=31.80 Aligned_cols=55 Identities=29% Similarity=0.369 Sum_probs=47.8
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhh
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAG 128 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~ 128 (183)
..+-+.+|+||.-.=+|-.....+..++.+++..-..++||...=++++.+++.+
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrv 203 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRV 203 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheE
Confidence 4566899999998888877888999999999888899999999999999998864
No 245
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=79.85 E-value=1.2 Score=41.98 Aligned_cols=119 Identities=23% Similarity=0.263 Sum_probs=69.3
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhc-CCcCCCCceEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM-DVLDFRNLEIL 80 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~-~~~~l~~l~~l 80 (183)
+++++|-..|+..-.+--.+. ...|++++.-+.|....+ .... ..++++|+||++...+.++. +.--+.+++.+
T Consensus 976 vvyIap~kalvker~~Dw~~r-~~~~g~k~ie~tgd~~pd--~~~v--~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~i 1050 (1230)
T KOG0952|consen 976 VVYIAPDKALVKERSDDWSKR-DELPGIKVIELTGDVTPD--VKAV--READIVITTPEKWDGISRSWQTRKYVQSVSLI 1050 (1230)
T ss_pred EEEEcCCchhhcccccchhhh-cccCCceeEeccCccCCC--hhhe--ecCceEEcccccccCccccccchhhhccccce
Confidence 567777777776444333332 134577777777765544 2222 35899999999987777631 23347899999
Q ss_pred EEcccchhhccchHHHHHHHHHhC-------CCCCeEEEEeecCChHHHHHHHh
Q 030094 81 VLDEADRLLDMGFQKQISYIISRL-------PKLRRTGLFSATQTEAVEELSKA 127 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l-------~~~~Q~v~~SAT~~~~v~~~~~~ 127 (183)
|+||.|.+- .+..+-++.+.... ++..|.+.+|--+.+ ...++++
T Consensus 1051 v~de~hllg-~~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~n-a~dla~w 1102 (1230)
T KOG0952|consen 1051 VLDEIHLLG-EDRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALAN-ANDLADW 1102 (1230)
T ss_pred eeccccccc-CCCcceEEEEeeccccCccccCcchhhhhHhhhhhc-cHHHHHH
Confidence 999999874 34344443333322 233455555433332 2455554
No 246
>KOG1556 consensus 26S proteasome regulatory complex, subunit RPN8/PSMD7 [Posttranslational modification, protein turnover, chaperones]
Probab=79.63 E-value=8.5 Score=30.47 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=46.0
Q ss_pred hhhccchHHHHHHHHHhCCCCCeEEEEeecCC------hHHHHHHHhhCCCCeEEEEccCC
Q 030094 87 RLLDMGFQKQISYIISRLPKLRRTGLFSATQT------EAVEELSKAGLRNPVRVEVRAES 141 (183)
Q Consensus 87 ~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~------~~v~~~~~~~~~~~~~i~~~~~~ 141 (183)
.+++.+|.+.|..++...+.+-.++.+-.|=| -++.++.++|.+||+.+.++-.-
T Consensus 69 WFlDh~Y~esM~~mfkKvNakekivGWYhTGPkl~~nDl~In~l~k~y~pnpvLvIIdvkp 129 (309)
T KOG1556|consen 69 WFLDHNYIESMFGMFKKVNAKEKVVGWYHTGPKLRENDLDINELLKRYVPNPVLVIIDVKP 129 (309)
T ss_pred EEeccHHHHHHHHHHHHhcchhheeeeeccCCccccchhhHHHHHhhcCCCceEEEEeccc
Confidence 45677899999999999988888999988854 24889999999999988887653
No 247
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=79.56 E-value=23 Score=32.60 Aligned_cols=74 Identities=16% Similarity=0.092 Sum_probs=44.4
Q ss_pred cEEEeCcHHHHHHHHhcCCcCCCCceEEEEcccchhhccchHHHHHHHHHhC---CCCCeEEEEeecCChHHHHHHHhhC
Q 030094 53 NLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRL---PKLRRTGLFSATQTEAVEELSKAGL 129 (183)
Q Consensus 53 ~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l---~~~~Q~v~~SAT~~~~v~~~~~~~~ 129 (183)
-|=.-|-|-|++=.- ..-++.+-+.+|+||||.=.- ..+-+..+++.. ..+-..+..|||+. ...|...|-
T Consensus 447 ~IkymTDGiLLrEsL--~d~~L~kYSviImDEAHERsl--NtDilfGllk~~larRrdlKliVtSATm~--a~kf~nfFg 520 (1042)
T KOG0924|consen 447 KIKYMTDGILLRESL--KDRDLDKYSVIIMDEAHERSL--NTDILFGLLKKVLARRRDLKLIVTSATMD--AQKFSNFFG 520 (1042)
T ss_pred eEEEeccchHHHHHh--hhhhhhheeEEEechhhhccc--chHHHHHHHHHHHHhhccceEEEeecccc--HHHHHHHhC
Confidence 355667777654322 234577888999999997421 122222233222 24678999999998 456666555
Q ss_pred CCC
Q 030094 130 RNP 132 (183)
Q Consensus 130 ~~~ 132 (183)
+.|
T Consensus 521 n~p 523 (1042)
T KOG0924|consen 521 NCP 523 (1042)
T ss_pred CCc
Confidence 444
No 248
>PHA02558 uvsW UvsW helicase; Provisional
Probab=79.26 E-value=10 Score=33.14 Aligned_cols=71 Identities=13% Similarity=0.246 Sum_probs=49.4
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
.+|++.+.+=|..+++.+.+. +.++..+.|+.+.++... ....+...|+|+|-+ ++. .++|..++.
T Consensus 347 ~lV~~~~~~h~~~L~~~L~~~-----g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~----~l~--eG~Dip~ld 415 (501)
T PHA02558 347 TFVMFKYVEHGKPLYEMLKKV-----YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYG----VFS--TGISIKNLH 415 (501)
T ss_pred EEEEEEEHHHHHHHHHHHHHc-----CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcc----eec--ccccccccc
Confidence 578888888777777766663 568889999877554433 222244578999853 443 478999999
Q ss_pred EEEEc
Q 030094 79 ILVLD 83 (183)
Q Consensus 79 ~lVvD 83 (183)
.+|+.
T Consensus 416 ~vIl~ 420 (501)
T PHA02558 416 HVIFA 420 (501)
T ss_pred EEEEe
Confidence 99964
No 249
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=79.10 E-value=5.5 Score=37.78 Aligned_cols=74 Identities=18% Similarity=0.302 Sum_probs=50.1
Q ss_pred EEEEeCc---HHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcC-CCCc
Q 030094 2 GMIISPT---RELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLD-FRNL 77 (183)
Q Consensus 2 alIl~Pt---reLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~-l~~l 77 (183)
+||.||+ +|.|..+++.++.. ++++.....+. ++.......+..|++||....---+. .++| +..+
T Consensus 338 gLIfV~~d~G~e~aeel~e~Lr~~-----Gi~a~~~~a~~--~~~le~F~~GeidvLVGvAsyYG~lV---RGlDLP~ri 407 (1187)
T COG1110 338 GLIFVPIDYGREKAEELAEYLRSH-----GINAELIHAEK--EEALEDFEEGEVDVLVGVASYYGVLV---RGLDLPHRI 407 (1187)
T ss_pred eEEEEEcHHhHHHHHHHHHHHHhc-----CceEEEeeccc--hhhhhhhccCceeEEEEeccccccee---ecCCchhhe
Confidence 6899999 88888887766664 67777776654 44445555678999999875443333 3455 5666
Q ss_pred eEEEEccc
Q 030094 78 EILVLDEA 85 (183)
Q Consensus 78 ~~lVvDEa 85 (183)
++.|+=.+
T Consensus 408 rYaIF~Gv 415 (1187)
T COG1110 408 RYAVFYGV 415 (1187)
T ss_pred eEEEEecC
Confidence 77665433
No 250
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=79.09 E-value=6.3 Score=30.03 Aligned_cols=54 Identities=15% Similarity=0.261 Sum_probs=45.1
Q ss_pred CCceEEEEcccchhhccch--HHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhh
Q 030094 75 RNLEILVLDEADRLLDMGF--QKQISYIISRLPKLRRTGLFSATQTEAVEELSKAG 128 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~--~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~ 128 (183)
...+++|+||.-..+..++ .+.+..+++.-|....+|+.+-..++++.+.++..
T Consensus 121 ~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADlV 176 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADLV 176 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 3578999999999998775 57888888888888888888888899988888754
No 251
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=78.95 E-value=6.9 Score=35.96 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=39.3
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHH-------HhcCCcEEEeCc
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKI-------EEEGANLLIGTP 59 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l-------~~~~~~IiV~TP 59 (183)
++|++.|...|..+|+.++... . ++.++.+........+.. ..+++.|+|||.
T Consensus 443 vlvI~NTV~~Aie~Y~~Lk~~~----~-~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQ 502 (733)
T COG1203 443 VLVIVNTVDRAIELYEKLKEKG----P-KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQ 502 (733)
T ss_pred EEEEEecHHHHHHHHHHHHhcC----C-CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEee
Confidence 6899999999999999888864 2 788888876544333322 236788999985
No 252
>PF13173 AAA_14: AAA domain
Probab=78.73 E-value=4.9 Score=27.98 Aligned_cols=40 Identities=10% Similarity=0.225 Sum_probs=29.6
Q ss_pred CceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCC
Q 030094 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (183)
Q Consensus 76 ~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~ 118 (183)
.-.++++||++.+ .++...++.+.+.- ++.++++.+....
T Consensus 61 ~~~~i~iDEiq~~--~~~~~~lk~l~d~~-~~~~ii~tgS~~~ 100 (128)
T PF13173_consen 61 GKKYIFIDEIQYL--PDWEDALKFLVDNG-PNIKIILTGSSSS 100 (128)
T ss_pred CCcEEEEehhhhh--ccHHHHHHHHHHhc-cCceEEEEccchH
Confidence 4568999999998 35788888888865 4667777665444
No 253
>PRK08084 DNA replication initiation factor; Provisional
Probab=77.84 E-value=26 Score=27.23 Aligned_cols=90 Identities=8% Similarity=0.073 Sum_probs=44.6
Q ss_pred CceEEEEEcCcchHHH------HHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEcccchhhcc-chHHHHHHH
Q 030094 28 DVKSVLLVGGVEVKAD------VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDM-GFQKQISYI 100 (183)
Q Consensus 28 ~~~~~~~~g~~~~~~~------~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEad~ll~~-~~~~~l~~i 100 (183)
......++|......- ...+...+..+..-+.......... -.-.+.+..++++||+|.+-.. .....+-++
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~-~~~~~~~~dlliiDdi~~~~~~~~~~~~lf~l 122 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVPE-VLEGMEQLSLVCIDNIECIAGDELWEMAIFDL 122 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHH-HHHHhhhCCEEEEeChhhhcCCHHHHHHHHHH
Confidence 3456677776442211 1122223556666555443221111 0001234578999999998542 345556666
Q ss_pred HHhCCC--CCeEEEEeecCCh
Q 030094 101 ISRLPK--LRRTGLFSATQTE 119 (183)
Q Consensus 101 ~~~l~~--~~Q~v~~SAT~~~ 119 (183)
+..... ..++++ |++.++
T Consensus 123 ~n~~~e~g~~~li~-ts~~~p 142 (235)
T PRK08084 123 YNRILESGRTRLLI-TGDRPP 142 (235)
T ss_pred HHHHHHcCCCeEEE-eCCCCh
Confidence 655432 345555 554443
No 254
>PRK14701 reverse gyrase; Provisional
Probab=77.79 E-value=5.7 Score=39.79 Aligned_cols=75 Identities=21% Similarity=0.290 Sum_probs=46.3
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCC-ceE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRN-LEI 79 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~-l~~ 79 (183)
.+||.|||++-+....+....|.. . ++++..+.|+ .....+...++..+|+|||-.- ...+. .++|+.+ +++
T Consensus 332 ~gIVF~~t~~~~e~ae~la~~L~~-~-Gi~a~~~h~~--R~~~l~~F~~G~~~VLVaT~s~-~gvaa--RGIDiP~~Vry 404 (1638)
T PRK14701 332 GGLIFVPIDEGAEKAEEIEKYLLE-D-GFKIELVSAK--NKKGFDLFEEGEIDYLIGVATY-YGTLV--RGLDLPERIRF 404 (1638)
T ss_pred CeEEEEeccccchHHHHHHHHHHH-C-CCeEEEecch--HHHHHHHHHcCCCCEEEEecCC-CCeeE--ecCccCCccCE
Confidence 378999998865333333334432 2 7888888886 4455566667889999999310 00111 3566655 677
Q ss_pred EEE
Q 030094 80 LVL 82 (183)
Q Consensus 80 lVv 82 (183)
+|.
T Consensus 405 vi~ 407 (1638)
T PRK14701 405 AVF 407 (1638)
T ss_pred EEE
Confidence 665
No 255
>PF15586 Imm47: Immunity protein 47
Probab=77.40 E-value=6.6 Score=27.38 Aligned_cols=50 Identities=20% Similarity=0.199 Sum_probs=33.8
Q ss_pred CCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEcccchhhccchHHHHHHHHHhCC
Q 030094 51 GANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP 105 (183)
Q Consensus 51 ~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~ 105 (183)
.-++.|+||..|.....+ +.+ +-.=.++|++|.|.= .-...++.+++...
T Consensus 44 ~F~v~VcTP~wL~~~~~~-~~~-~~gr~~LIv~~yd~~---~I~~~i~~~i~~c~ 93 (116)
T PF15586_consen 44 YFQVFVCTPKWLSKNCWK-PGI-LWGRHMLIVEEYDYD---EIKKTIERIIESCE 93 (116)
T ss_pred eEEEEEEcHHHHHHhhcC-Ccc-eeccceEEEecCCHH---HHHHHHHHHHHHcc
Confidence 368999999999998766 332 222248999998652 24566667776663
No 256
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=77.00 E-value=10 Score=36.72 Aligned_cols=116 Identities=16% Similarity=0.177 Sum_probs=66.7
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCC-ceEEEEEcCcchH-HHHHHHHhcCCcEEEeCcHHHHHHHHhc----------
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPD-VKSVLLVGGVEVK-ADVKKIEEEGANLLIGTPGRLYDIMERM---------- 69 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~-~~~~~~~g~~~~~-~~~~~l~~~~~~IiV~TP~~l~~~l~~~---------- 69 (183)
.||+||.--| .|.++++.+ +.++ +++....|-.... .+...+ -++|||++|-..|..=+...
T Consensus 423 TLII~P~aIl-~QW~~EI~k---H~~~~lKv~~Y~Girk~~~~~~~el--~~yDIVlTtYdiLr~El~hte~~~~~R~lR 496 (1394)
T KOG0298|consen 423 TLIICPNAIL-MQWFEEIHK---HISSLLKVLLYFGIRKTFWLSPFEL--LQYDIVLTTYDILRNELYHTEDFGSDRQLR 496 (1394)
T ss_pred eEEECcHHHH-HHHHHHHHH---hccccceEEEEechhhhcccCchhh--hccCEEEeehHHHHhHhhcccccCChhhhh
Confidence 4899997654 455555544 4433 4777666632211 111223 36899999998887666531
Q ss_pred ---CCcCC-C---CceE--EEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 70 ---DVLDF-R---NLEI--LVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 70 ---~~~~l-~---~l~~--lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
+..++ + .+.+ +++|||-.+ .. ..........+++ .-..+.+|.|.-..+..+..
T Consensus 497 ~qsr~~~~~SPL~~v~wWRIclDEaQMv-es-ssS~~a~M~~rL~-~in~W~VTGTPiq~Iddl~~ 559 (1394)
T KOG0298|consen 497 HQSRYMRPNSPLLMVNWWRICLDEAQMV-ES-SSSAAAEMVRRLH-AINRWCVTGTPIQKIDDLFP 559 (1394)
T ss_pred cccCCCCCCCchHHHHHHHHhhhHHHhh-cc-hHHHHHHHHHHhh-hhceeeecCCchhhhhhhHH
Confidence 11111 1 1121 599999665 33 4556666677775 34567889996555555444
No 257
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=76.87 E-value=9.2 Score=33.23 Aligned_cols=108 Identities=12% Similarity=0.121 Sum_probs=67.6
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHH---HHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
.+|.|-|++-|.++...+... ++....+.|.....++ .+......++++|+|. ... .++|.++|+
T Consensus 340 tlvFvEt~~~~d~l~~~l~~~-----~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~-----Vaa--RGlDi~~V~ 407 (482)
T KOG0335|consen 340 TLVFVETKRGADELAAFLSSN-----GYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATN-----VAA--RGLDIPNVK 407 (482)
T ss_pred EEEEeeccchhhHHHHHHhcC-----CCCceeecchhhhhHHHHHHHHhhcCCcceEEEeh-----hhh--cCCCCCCCc
Confidence 478899999999888766654 5566666766554433 3344557799999995 443 589999999
Q ss_pred EEEEcccchhhccchHHHHHHHHHhCC---CCCeEEEEeecCChHHHHHH
Q 030094 79 ILVLDEADRLLDMGFQKQISYIISRLP---KLRRTGLFSATQTEAVEELS 125 (183)
Q Consensus 79 ~lVvDEad~ll~~~~~~~l~~i~~~l~---~~~Q~v~~SAT~~~~v~~~~ 125 (183)
++|.=+.-.. +.+-+++|-+.=. ..+=+.||.+-..+-.+.+.
T Consensus 408 hVInyDmP~d----~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~ 453 (482)
T KOG0335|consen 408 HVINYDMPAD----IDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALV 453 (482)
T ss_pred eeEEeecCcc----hhhHHHhccccccCCCCceeEEEeccccchhHHHHH
Confidence 9986554332 4445555443221 13456677644433333333
No 258
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=76.41 E-value=23 Score=33.01 Aligned_cols=86 Identities=13% Similarity=0.271 Sum_probs=62.1
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHH---HHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||.++||.-|..+...+++... ..+....|..+.+.. .+.+++++...+|||.. ++. ++|..++.
T Consensus 256 tLIF~NTR~~aE~l~~~L~~~~~----~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSS-----LEL--GIDiG~vd 324 (814)
T COG1201 256 TLIFTNTRSGAERLAFRLKKLGP----DIIEVHHGSLSRELRLEVEERLKEGELKAVVATSS-----LEL--GIDIGDID 324 (814)
T ss_pred EEEEEeChHHHHHHHHHHHHhcC----CceeeecccccHHHHHHHHHHHhcCCceEEEEccc-----hhh--ccccCCce
Confidence 68999999999999888888742 445556665554333 33566778999999963 443 68888888
Q ss_pred EEEEcccchhhccchHHHHHHHHHhCCC
Q 030094 79 ILVLDEADRLLDMGFQKQISYIISRLPK 106 (183)
Q Consensus 79 ~lVvDEad~ll~~~~~~~l~~i~~~l~~ 106 (183)
.+| ..+....+..++++.++
T Consensus 325 lVI--------q~~SP~sV~r~lQRiGR 344 (814)
T COG1201 325 LVI--------QLGSPKSVNRFLQRIGR 344 (814)
T ss_pred EEE--------EeCCcHHHHHHhHhccc
Confidence 777 23457788888888864
No 259
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=75.84 E-value=15 Score=28.28 Aligned_cols=115 Identities=12% Similarity=0.155 Sum_probs=64.1
Q ss_pred EeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchH--HH----HHHHHh--cCCcEEEeCcHHHHHHH----HhcCCc
Q 030094 5 ISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVK--AD----VKKIEE--EGANLLIGTPGRLYDIM----ERMDVL 72 (183)
Q Consensus 5 l~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~--~~----~~~l~~--~~~~IiV~TP~~l~~~l----~~~~~~ 72 (183)
..++.++|....+.+..-. .. ......++|+.... .- .+.+.+ .+..|+--+...+...+ .. +..
T Consensus 12 ~g~~N~~a~~~~~~ia~~~-~~-~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~-~~~ 88 (219)
T PF00308_consen 12 VGESNELAYAAAKAIAENP-GE-RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRD-GEI 88 (219)
T ss_dssp -TTTTHHHHHHHHHHHHST-TT-SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHT-TSH
T ss_pred cCCcHHHHHHHHHHHHhcC-CC-CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHc-ccc
Confidence 3456777776655444431 11 24456778866421 11 112211 35678877777765433 22 221
Q ss_pred -----CCCCceEEEEcccchhhccc-hHHHHHHHHHhCC-CCCeEEEEeecCChHHH
Q 030094 73 -----DFRNLEILVLDEADRLLDMG-FQKQISYIISRLP-KLRRTGLFSATQTEAVE 122 (183)
Q Consensus 73 -----~l~~l~~lVvDEad~ll~~~-~~~~l~~i~~~l~-~~~Q~v~~SAT~~~~v~ 122 (183)
.+.+.+++++|+.|.+-+.. ....+-++++.+. .+.|+++.|...|.++.
T Consensus 89 ~~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~ 145 (219)
T PF00308_consen 89 EEFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELS 145 (219)
T ss_dssp HHHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTT
T ss_pred hhhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcccc
Confidence 26788999999999986542 3556666666553 45677777766666543
No 260
>PRK00254 ski2-like helicase; Provisional
Probab=75.57 E-value=19 Score=32.99 Aligned_cols=76 Identities=14% Similarity=0.202 Sum_probs=47.8
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhh----------------hC---C---------CceEEEEEcCcchHHHHH---HHHh
Q 030094 1 MGMIISPTRELSSQIYHVAQPFIS----------------TL---P---------DVKSVLLVGGVEVKADVK---KIEE 49 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~----------------~~---~---------~~~~~~~~g~~~~~~~~~---~l~~ 49 (183)
++||.||||.-|..+...+.+... .. + ...+...++|.+.+++.. ...+
T Consensus 240 ~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~ 319 (720)
T PRK00254 240 GALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFRE 319 (720)
T ss_pred CEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHC
Confidence 479999999888766554433211 00 0 124777888877654433 3345
Q ss_pred cCCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEc
Q 030094 50 EGANLLIGTPGRLYDIMERMDVLDFRNLEILVLD 83 (183)
Q Consensus 50 ~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvD 83 (183)
+..+|+|||+ .+. .++|+.....+|.+
T Consensus 320 G~i~VLvaT~-----tLa--~Gvnipa~~vVI~~ 346 (720)
T PRK00254 320 GLIKVITATP-----TLS--AGINLPAFRVIIRD 346 (720)
T ss_pred CCCeEEEeCc-----HHh--hhcCCCceEEEECC
Confidence 6789999997 333 36777777777643
No 261
>PRK02362 ski2-like helicase; Provisional
Probab=75.56 E-value=18 Score=33.22 Aligned_cols=75 Identities=8% Similarity=0.131 Sum_probs=48.9
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhC--------------------C-----------CceEEEEEcCcchHHHHH---H
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTL--------------------P-----------DVKSVLLVGGVEVKADVK---K 46 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~--------------------~-----------~~~~~~~~g~~~~~~~~~---~ 46 (183)
++||.||||.-|..+...+....... + ...++...||.+..++.. .
T Consensus 245 ~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~ 324 (737)
T PRK02362 245 QCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDA 324 (737)
T ss_pred CeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHH
Confidence 47999999998888877766543200 0 124677788876544432 3
Q ss_pred HHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEEE
Q 030094 47 IEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVL 82 (183)
Q Consensus 47 l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVv 82 (183)
..++..+|+|+|+ .+. .++|+....++|-
T Consensus 325 Fr~G~i~VLvaT~-----tla--~GvnlPa~~VVI~ 353 (737)
T PRK02362 325 FRDRLIKVISSTP-----TLA--AGLNLPARRVIIR 353 (737)
T ss_pred HHcCCCeEEEech-----hhh--hhcCCCceEEEEe
Confidence 3456789999997 333 3678777766663
No 262
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=75.31 E-value=3.5 Score=36.43 Aligned_cols=51 Identities=14% Similarity=0.196 Sum_probs=40.2
Q ss_pred CceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhh
Q 030094 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAG 128 (183)
Q Consensus 76 ~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~ 128 (183)
....+|+||+|.=++..-...|-.-++.+...+|+++.|- -|.|...++.+
T Consensus 453 ~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~~~QVl~VTH--lPQVAa~ad~H 503 (557)
T COG0497 453 DTPTLIFDEVDTGISGRVAQAVGKKLRRLSEHHQVLCVTH--LPQVAAMADTH 503 (557)
T ss_pred CCCeEEEecccCCCChHHHHHHHHHHHHHhcCceEEEEec--HHHHHhhhcce
Confidence 4568999999998876677788888899999999998754 55666666654
No 263
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=75.10 E-value=3.3 Score=37.26 Aligned_cols=40 Identities=25% Similarity=0.348 Sum_probs=29.9
Q ss_pred cCCcEEEeCcHHHHHHHHhcCCcC--CCCceEEEEcccchhhc
Q 030094 50 EGANLLIGTPGRLYDIMERMDVLD--FRNLEILVLDEADRLLD 90 (183)
Q Consensus 50 ~~~~IiV~TP~~l~~~l~~~~~~~--l~~l~~lVvDEad~ll~ 90 (183)
..++++|+++..+..-... .... +-.-..+|+||||++-+
T Consensus 193 ~~ad~vv~nh~~~~~~~~~-~~~~~~~p~~~v~v~DEAH~l~d 234 (654)
T COG1199 193 ENADLVVTNHALLLADVAL-EESRILLPENDVVVFDEAHNLPD 234 (654)
T ss_pred hhCCEEEEccHHHHhHHHh-hhhhccCCcccEEEEeccccchH
Confidence 4689999999988876554 2222 33457999999999865
No 264
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=75.08 E-value=35 Score=26.06 Aligned_cols=86 Identities=14% Similarity=0.086 Sum_probs=47.3
Q ss_pred CceEEEEEcCcchHH--HHH----HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEcccchhhccchHHHHHHHH
Q 030094 28 DVKSVLLVGGVEVKA--DVK----KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYII 101 (183)
Q Consensus 28 ~~~~~~~~g~~~~~~--~~~----~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEad~ll~~~~~~~l~~i~ 101 (183)
.-....++|...... -.. .....+..+++-+...+...... ..+.+.+++||+|.+-. .....+..++
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~liiDdi~~l~~-~~~~~L~~~~ 114 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAFDF-----DPEAELYAVDDVERLDD-AQQIALFNLF 114 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHHhh-----cccCCEEEEeChhhcCc-hHHHHHHHHH
Confidence 345667777543221 111 22234567777776655443321 23467899999998743 3345566666
Q ss_pred HhCCCCCe-EEEEeecCCh
Q 030094 102 SRLPKLRR-TGLFSATQTE 119 (183)
Q Consensus 102 ~~l~~~~Q-~v~~SAT~~~ 119 (183)
+....... +++++++.++
T Consensus 115 ~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 115 NRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred HHHHHcCCcEEEEeCCCCH
Confidence 55443333 4677777654
No 265
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=74.89 E-value=5.5 Score=30.65 Aligned_cols=35 Identities=17% Similarity=0.354 Sum_probs=25.2
Q ss_pred eEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeec
Q 030094 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (183)
Q Consensus 78 ~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT 116 (183)
.++|+|||-.+ ...++..++.++++++++++++-.
T Consensus 121 ~~iIvDEaQN~----t~~~~k~ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 121 AFIIVDEAQNL----TPEELKMILTRIGEGSKIIITGDP 155 (205)
T ss_dssp EEEEE-SGGG------HHHHHHHHTTB-TT-EEEEEE--
T ss_pred eEEEEecccCC----CHHHHHHHHcccCCCcEEEEecCc
Confidence 78999999776 478999999999999999987654
No 266
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=74.48 E-value=6.8 Score=28.69 Aligned_cols=65 Identities=20% Similarity=0.310 Sum_probs=40.1
Q ss_pred CCcEEEeCcHH---------HHHHHHhcCCcC--CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecC
Q 030094 51 GANLLIGTPGR---------LYDIMERMDVLD--FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (183)
Q Consensus 51 ~~~IiV~TP~~---------l~~~l~~~~~~~--l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~ 117 (183)
-||+.+-.|.. +.++... -... -..-+++|+||||.|-.. ....+.+.++.-|..+..++.+...
T Consensus 67 ~~d~~~~~~~~~~~~i~i~~ir~i~~~-~~~~~~~~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 67 HPDFIIIKPDKKKKSIKIDQIREIIEF-LSLSPSEGKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp CTTEEEEETTTSSSSBSHHHHHHHHHH-CTSS-TTSSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CcceEEEecccccchhhHHHHHHHHHH-HHHHHhcCCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECCh
Confidence 57888777663 2333333 1111 256889999999998543 4666667777777667766665443
No 267
>PF13514 AAA_27: AAA domain
Probab=74.43 E-value=7.3 Score=37.49 Aligned_cols=55 Identities=20% Similarity=0.260 Sum_probs=45.7
Q ss_pred EEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEE
Q 030094 79 ILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRV 135 (183)
Q Consensus 79 ~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i 135 (183)
.||+|++=.-+|..-...+..++..+.+.+|+++||+ .+++..+++..+.+.+.|
T Consensus 1054 P~IlDD~fvnfDd~R~~~~l~~L~~ls~~~QVI~FTc--h~~l~~~a~~~~~~~v~v 1108 (1111)
T PF13514_consen 1054 PFILDDIFVNFDDERARAALELLAELSRRRQVIYFTC--HEHLVELAREVFGDRVNV 1108 (1111)
T ss_pred cEEeeCCccccCHHHHHHHHHHHHHhccCCeEEEEec--cHHHHHHHHHhcCCCCce
Confidence 4899999777777778888888999999999999988 677888888877766655
No 268
>PRK10536 hypothetical protein; Provisional
Probab=74.19 E-value=4.9 Score=32.14 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=28.8
Q ss_pred eEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEee
Q 030094 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (183)
Q Consensus 78 ~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SA 115 (183)
.++|+|||..+ -...+..++.+++.++++++.+-
T Consensus 178 ~~vIvDEaqn~----~~~~~k~~ltR~g~~sk~v~~GD 211 (262)
T PRK10536 178 AVVILDEAQNV----TAAQMKMFLTRLGENVTVIVNGD 211 (262)
T ss_pred CEEEEechhcC----CHHHHHHHHhhcCCCCEEEEeCC
Confidence 69999999887 25789999999999998888654
No 269
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=73.86 E-value=2.1 Score=39.00 Aligned_cols=39 Identities=26% Similarity=0.321 Sum_probs=27.4
Q ss_pred CCcEEEeCcHHHHHHHHh-cCCcCCCCceEEEEcccchhhc
Q 030094 51 GANLLIGTPGRLYDIMER-MDVLDFRNLEILVLDEADRLLD 90 (183)
Q Consensus 51 ~~~IiV~TP~~l~~~l~~-~~~~~l~~l~~lVvDEad~ll~ 90 (183)
.+||||+.-.-|.+---+ .-..++++ .++|+||||.+.+
T Consensus 195 ~advIi~pYnyl~dp~~r~~~~~~l~~-~ivI~DEAHNL~d 234 (705)
T TIGR00604 195 FANIVLLPYQYLLDPKIRSAVSIELKD-SIVIFDEAHNLDN 234 (705)
T ss_pred cCCEEEechHHhcCHHHHHHhhccccc-CEEEEECccchHH
Confidence 489999998877554333 11234555 7899999999865
No 270
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=72.74 E-value=5.2 Score=33.07 Aligned_cols=38 Identities=24% Similarity=0.359 Sum_probs=28.6
Q ss_pred CceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEe
Q 030094 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (183)
Q Consensus 76 ~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~S 114 (183)
..+++|+||||.|... -...+++.+.....+..++..+
T Consensus 131 ~fKlvILDEADaMT~~-AQnALRRviek~t~n~rF~ii~ 168 (360)
T KOG0990|consen 131 AFKLVILDEADAMTRD-AQNALRRVIEKYTANTRFATIS 168 (360)
T ss_pred ceeEEEecchhHhhHH-HHHHHHHHHHHhccceEEEEec
Confidence 6899999999999643 4667777788777666666544
No 271
>PRK06835 DNA replication protein DnaC; Validated
Probab=72.73 E-value=53 Score=27.14 Aligned_cols=130 Identities=15% Similarity=0.241 Sum_probs=71.9
Q ss_pred cHHHHHHHHHHHHHhhhhCC-CceEEEEEcCcchH------HHHHHHHhcCCcEEEeCcHHHHHHHHhc---CC------
Q 030094 8 TRELSSQIYHVAQPFISTLP-DVKSVLLVGGVEVK------ADVKKIEEEGANLLIGTPGRLYDIMERM---DV------ 71 (183)
Q Consensus 8 treLa~Qi~~~~~~l~~~~~-~~~~~~~~g~~~~~------~~~~~l~~~~~~IiV~TP~~l~~~l~~~---~~------ 71 (183)
.|+-..++.+.+..+...+. .-....++|..... .-...+...+..|+.-|...+.+.+... ..
T Consensus 161 ~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~ 240 (329)
T PRK06835 161 PRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEV 240 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHH
Confidence 35666677777777766331 22556677754321 1122333467888888888877766431 11
Q ss_pred -cCCCCceEEEEcccchhhccch-HHHHHHHHHhCC-CCCeEEEEeecCCh-HHH-----HHHHhhCCCCeEEEEc
Q 030094 72 -LDFRNLEILVLDEADRLLDMGF-QKQISYIISRLP-KLRRTGLFSATQTE-AVE-----ELSKAGLRNPVRVEVR 138 (183)
Q Consensus 72 -~~l~~l~~lVvDEad~ll~~~~-~~~l~~i~~~l~-~~~Q~v~~SAT~~~-~v~-----~~~~~~~~~~~~i~~~ 138 (183)
-.+.++.+||+|+........+ ...+-.|+...- ....+++ |+.+++ ++. .+.+........|.+.
T Consensus 241 ~~~l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIi-TSNl~~~el~~~~~eri~SRL~~~~~~i~~~ 315 (329)
T PRK06835 241 YDLLINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMII-STNLSLEELLKTYSERISSRLLGNFTLLKFY 315 (329)
T ss_pred HHHhccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEE-ECCCCHHHHHHHHhHHHHHHHHcCCEEEEec
Confidence 1246889999999987654333 345555555442 2344555 555544 332 2444444455555543
No 272
>PLN03025 replication factor C subunit; Provisional
Probab=72.51 E-value=6.3 Score=32.16 Aligned_cols=39 Identities=23% Similarity=0.274 Sum_probs=27.0
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEe
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~S 114 (183)
.+.+++++||+|.|... -...+...++..++.+.+++.+
T Consensus 98 ~~~kviiiDE~d~lt~~-aq~aL~~~lE~~~~~t~~il~~ 136 (319)
T PLN03025 98 GRHKIVILDEADSMTSG-AQQALRRTMEIYSNTTRFALAC 136 (319)
T ss_pred CCeEEEEEechhhcCHH-HHHHHHHHHhcccCCceEEEEe
Confidence 45789999999998654 3556666677666666655543
No 273
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.43 E-value=50 Score=27.65 Aligned_cols=132 Identities=15% Similarity=0.154 Sum_probs=80.2
Q ss_pred EEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcC--CCCceEE
Q 030094 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLD--FRNLEIL 80 (183)
Q Consensus 3 lIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~--l~~l~~l 80 (183)
+.+.-|..-|.|+...++.-+ +-+.......+...+........++.+-+---+.....++.+-.+| .+++.-
T Consensus 7 vLllGtGpvaIQlAv~l~~h~----d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd~a~- 81 (431)
T COG4408 7 VLLLGTGPVAIQLAVDLSAHG----DARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDLAQ- 81 (431)
T ss_pred eeEeecCcHHHHHHHHHHhcc----CceeeccCCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhhHHH-
Confidence 456677788899888777653 3444444333344444444445567777766666677776522233 122222
Q ss_pred EEcccchhhc----cchHHHHHHH-HHhCCCCCeEEEEeecCChH--HHHHHHhhCCCCeEEEEcc
Q 030094 81 VLDEADRLLD----MGFQKQISYI-ISRLPKLRRTGLFSATQTEA--VEELSKAGLRNPVRVEVRA 139 (183)
Q Consensus 81 VvDEad~ll~----~~~~~~l~~i-~~~l~~~~Q~v~~SAT~~~~--v~~~~~~~~~~~~~i~~~~ 139 (183)
+.||.+.++- ..|.+-++.| .+.++.-+-+++.|+|+... +.+++.+.-++...|....
T Consensus 82 ~~~dwqtlilav~aDaY~dvlqqi~~e~L~~vk~viLiSptfGsn~lv~~~mnk~~~daeViS~Ss 147 (431)
T COG4408 82 AVGDWQTLILAVPADAYYDVLQQIPWEALPQVKSVILISPTFGSNLLVQNLMNKAGRDAEVISLSS 147 (431)
T ss_pred hhchhheEEEEeecHHHHHHHhcCCHhHhccccEEEEecccccccHHHHHHHhhhCCCceEEEeeh
Confidence 3466665542 2244444433 23445667899999999877 7788888888888887654
No 274
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=72.15 E-value=6.7 Score=36.56 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=30.1
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHH
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~ 122 (183)
.+-+++||||+|.|-... .+.+.++++..+...-+||.+ |-.+.+.
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t-t~~~kLl 164 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT-TEPDKVI 164 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe-CChhhhh
Confidence 567899999999996543 445556666666666666654 4444433
No 275
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=72.14 E-value=20 Score=27.53 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=35.7
Q ss_pred CcEEEeCcHHHHHHHHhcCCcCCCCceEEEEcccchhhccchHHHHHHHHHhC
Q 030094 52 ANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRL 104 (183)
Q Consensus 52 ~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l 104 (183)
+-++|-.+..+.+.+.. ..-++. +..+.+|||.- ++......+..+.+.+
T Consensus 60 ~A~~i~~~~~i~~~i~~-~~~~~~-~~~v~IDEaQF-~~~~~v~~l~~lad~l 109 (201)
T COG1435 60 EAVVIPSDTDIFDEIAA-LHEKPP-VDCVLIDEAQF-FDEELVYVLNELADRL 109 (201)
T ss_pred cceecCChHHHHHHHHh-cccCCC-cCEEEEehhHh-CCHHHHHHHHHHHhhc
Confidence 56777888888888876 332222 78999999955 4555677777777765
No 276
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=72.07 E-value=15 Score=23.55 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=31.9
Q ss_pred EEEEeCcHHHHHHHH-HHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHH
Q 030094 2 GMIISPTRELSSQIY-HVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62 (183)
Q Consensus 2 alIl~PtreLa~Qi~-~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l 62 (183)
+|++|++.--...+. +.+++..+.. ++.+....+..... ... ..++|+++.||.-=
T Consensus 2 IlvvC~~Gi~TS~~~~~~i~~~~~~~-gi~~~~~~~~~~~~---~~~-~~~~D~il~~~~i~ 58 (90)
T PF02302_consen 2 ILVVCGSGIGTSLMVANKIKKALKEL-GIEVEVSAGSILEV---EEI-ADDADLILLTPQIA 58 (90)
T ss_dssp EEEEESSSSHHHHHHHHHHHHHHHHT-TECEEEEEEETTTH---HHH-HTT-SEEEEEESSG
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhc-cCceEEEEeccccc---ccc-cCCCcEEEEcCccc
Confidence 578887765544444 5555555554 56665555541111 112 35699999999654
No 277
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=71.73 E-value=9.5 Score=25.93 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=13.4
Q ss_pred ceEEEEcccchhhccc
Q 030094 77 LEILVLDEADRLLDMG 92 (183)
Q Consensus 77 l~~lVvDEad~ll~~~ 92 (183)
-.++++||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 4799999999998654
No 278
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=70.75 E-value=15 Score=32.21 Aligned_cols=72 Identities=17% Similarity=0.257 Sum_probs=53.1
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHH---HhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l---~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
.|+.+.+.+-|......++-+.... +.++..+.|+.+.+...+.+ ..++.+++||| +.|.+ ++|..++.
T Consensus 432 ~lcf~~S~~sa~Rl~~~L~v~~~~~-~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcS-----D~laR--GiDv~~v~ 503 (620)
T KOG0350|consen 432 TLCFVNSVSSANRLAHVLKVEFCSD-NFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICS-----DALAR--GIDVNDVD 503 (620)
T ss_pred EEEEecchHHHHHHHHHHHHHhccc-cchhhhhhhhhhHHHHHHHHHHHhcCCceEEEeh-----hhhhc--CCcccccc
Confidence 6888999999999999998443333 67777788877765554443 34678999998 56754 78888887
Q ss_pred EEE
Q 030094 79 ILV 81 (183)
Q Consensus 79 ~lV 81 (183)
.+|
T Consensus 504 ~VI 506 (620)
T KOG0350|consen 504 NVI 506 (620)
T ss_pred eEe
Confidence 766
No 279
>PRK10869 recombination and repair protein; Provisional
Probab=69.32 E-value=6.9 Score=34.73 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=32.4
Q ss_pred CceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEee
Q 030094 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (183)
Q Consensus 76 ~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SA 115 (183)
+.+++|+||.|.-++......+..++..+.+.+|+++.|.
T Consensus 452 ~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH 491 (553)
T PRK10869 452 ETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTH 491 (553)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 5689999999999998888888888888876777655443
No 280
>PRK08727 hypothetical protein; Validated
Probab=69.27 E-value=10 Score=29.45 Aligned_cols=91 Identities=8% Similarity=-0.007 Sum_probs=45.8
Q ss_pred eEEEEEcCcchHHH------HHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEcccchhhccc-hHHHHHHHHH
Q 030094 30 KSVLLVGGVEVKAD------VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMG-FQKQISYIIS 102 (183)
Q Consensus 30 ~~~~~~g~~~~~~~------~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEad~ll~~~-~~~~l~~i~~ 102 (183)
....++|+.....- ...+...+..++..+...+...+.. .--.+.+..++|+||+|.+.... ....+-+++.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~-~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n 120 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRD-ALEALEGRSLVALDGLESIAGQREDEVALFDFHN 120 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHH-HHHHHhcCCEEEEeCcccccCChHHHHHHHHHHH
Confidence 34677775542211 1123344666666665554433322 11125667899999999886432 2333444544
Q ss_pred hCC-CCCeEEEEeecCChHH
Q 030094 103 RLP-KLRRTGLFSATQTEAV 121 (183)
Q Consensus 103 ~l~-~~~Q~v~~SAT~~~~v 121 (183)
... +..++++.|...+.+.
T Consensus 121 ~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 121 RARAAGITLLYTARQMPDGL 140 (233)
T ss_pred HHHHcCCeEEEECCCChhhh
Confidence 442 2345555555444443
No 281
>PRK06620 hypothetical protein; Validated
Probab=68.98 E-value=50 Score=25.32 Aligned_cols=125 Identities=14% Similarity=0.148 Sum_probs=59.0
Q ss_pred EEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcch-HHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEEE
Q 030094 4 IISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEV-KADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVL 82 (183)
Q Consensus 4 Il~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~-~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVv 82 (183)
|+.|+.+.|........+-....|......++|.... +..........++..+.+...... . ...+..++++
T Consensus 19 vvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~------~-~~~~~d~lli 91 (214)
T PRK06620 19 IVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNE------E-ILEKYNAFII 91 (214)
T ss_pred EecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhch------h-HHhcCCEEEE
Confidence 5667677676555544431112211255778876542 222222223334444433222111 1 1234568999
Q ss_pred cccchhhccchHHHHHHHHHhCC-CCCeEEEEeecCChHH--HHHHHhhCCCCeEEEEccC
Q 030094 83 DEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAV--EELSKAGLRNPVRVEVRAE 140 (183)
Q Consensus 83 DEad~ll~~~~~~~l~~i~~~l~-~~~Q~v~~SAT~~~~v--~~~~~~~~~~~~~i~~~~~ 140 (183)
||+|.+- ...+-++++.+. ...|+++.|.|.++.. ..+... +.....+.+..-
T Consensus 92 Ddi~~~~----~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SR-l~~gl~~~l~~p 147 (214)
T PRK06620 92 EDIENWQ----EPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSR-IKSVLSILLNSP 147 (214)
T ss_pred eccccch----HHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHH-HhCCceEeeCCC
Confidence 9999652 134445555443 3456666666566542 223333 333344554443
No 282
>PRK04195 replication factor C large subunit; Provisional
Probab=68.32 E-value=80 Score=27.41 Aligned_cols=80 Identities=15% Similarity=0.173 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhhhhCCCceEEEEEcCcchH--HHHHHH-HhcCCcEEEeCcH------HHHHHHHhc---CCcCCCCc
Q 030094 10 ELSSQIYHVAQPFISTLPDVKSVLLVGGVEVK--ADVKKI-EEEGANLLIGTPG------RLYDIMERM---DVLDFRNL 77 (183)
Q Consensus 10 eLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~--~~~~~l-~~~~~~IiV~TP~------~l~~~l~~~---~~~~l~~l 77 (183)
+...++.+.+....... ..+..+++|..... .-...+ ...+.+++.-++. .+...+... ..+.-..-
T Consensus 21 ~~~~~l~~~l~~~~~g~-~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~~~~~~~sl~~~~~ 99 (482)
T PRK04195 21 KAKEQLREWIESWLKGK-PKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGEAATSGSLFGARR 99 (482)
T ss_pred HHHHHHHHHHHHHhcCC-CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHHHhhccCcccCCCC
Confidence 34455666665554333 25677888765422 222222 2235566655442 233333220 11111256
Q ss_pred eEEEEcccchhhc
Q 030094 78 EILVLDEADRLLD 90 (183)
Q Consensus 78 ~~lVvDEad~ll~ 90 (183)
+++|+||+|.+..
T Consensus 100 kvIiIDEaD~L~~ 112 (482)
T PRK04195 100 KLILLDEVDGIHG 112 (482)
T ss_pred eEEEEecCccccc
Confidence 7999999999865
No 283
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=68.26 E-value=38 Score=28.64 Aligned_cols=68 Identities=22% Similarity=0.284 Sum_probs=49.6
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHH---HhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l---~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
++|.|.|.--|+-++..++.+ .+++..+.+-..-++..+.+ +.+...|+|||- +.. .++|.-+++
T Consensus 257 imIFvnttr~cQ~l~~~l~~l-----e~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTD------VAs-RGLDIP~V~ 324 (442)
T KOG0340|consen 257 IMIFVNTTRECQLLSMTLKNL-----EVRVVSLHSQMPQKERLAALSRFRSNAARILIATD------VAS-RGLDIPTVE 324 (442)
T ss_pred EEEEeehhHHHHHHHHHHhhh-----ceeeeehhhcchHHHHHHHHHHHhhcCccEEEEec------hhh-cCCCCCcee
Confidence 456666665566666666665 78999999887777666654 346789999995 234 689999999
Q ss_pred EEE
Q 030094 79 ILV 81 (183)
Q Consensus 79 ~lV 81 (183)
++|
T Consensus 325 LVv 327 (442)
T KOG0340|consen 325 LVV 327 (442)
T ss_pred EEE
Confidence 988
No 284
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=68.13 E-value=31 Score=29.60 Aligned_cols=94 Identities=16% Similarity=0.249 Sum_probs=47.8
Q ss_pred ceEEEEEcCcchHH------HHHHHHhc--CCcEEEeCcHHHHHHHHh-c--CC---c--CCCCceEEEEcccchhhccc
Q 030094 29 VKSVLLVGGVEVKA------DVKKIEEE--GANLLIGTPGRLYDIMER-M--DV---L--DFRNLEILVLDEADRLLDMG 92 (183)
Q Consensus 29 ~~~~~~~g~~~~~~------~~~~l~~~--~~~IiV~TP~~l~~~l~~-~--~~---~--~l~~l~~lVvDEad~ll~~~ 92 (183)
.....++|+..... -.+.+... +..++..|...+..-+.. . +. + .+.++.++++||+|.+.+..
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCCH
Confidence 34567777654221 11122222 566776676655432211 0 11 1 24567899999999985432
Q ss_pred -hHHHHHHHHHhCC-CCCeEEEEeecCChHHH
Q 030094 93 -FQKQISYIISRLP-KLRRTGLFSATQTEAVE 122 (183)
Q Consensus 93 -~~~~l~~i~~~l~-~~~Q~v~~SAT~~~~v~ 122 (183)
....+-.++..+- ...|+++.|...+..+.
T Consensus 228 ~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 228 RTQEEFFHTFNALHEAGKQIVLTSDRPPKELP 259 (450)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 2344455554442 34566555444444433
No 285
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=68.01 E-value=58 Score=31.34 Aligned_cols=43 Identities=19% Similarity=0.211 Sum_probs=29.6
Q ss_pred ceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHH
Q 030094 77 LEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121 (183)
Q Consensus 77 l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v 121 (183)
-.++|.||+|.|=+ -...+...+..+.-.|++++.+.-+.+.+
T Consensus 822 PD~vVCDE~HiLKN--eksa~Skam~~irtkRRI~LTGTPLQNNL 864 (1567)
T KOG1015|consen 822 PDFVVCDEGHILKN--EKSAVSKAMNSIRTKRRIILTGTPLQNNL 864 (1567)
T ss_pred CCeEEecchhhhcc--chHHHHHHHHHHHhheeEEeecCchhhhh
Confidence 46999999999843 35566677777766677777655555553
No 286
>KOG4284 consensus DEAD box protein [Transcription]
Probab=67.96 E-value=6.4 Score=35.70 Aligned_cols=69 Identities=12% Similarity=0.235 Sum_probs=45.8
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
||||.|.....|.-+...+.. .++.+.++.|..+-++... .++...+.|+|+|- ++. +++|..++
T Consensus 274 QAlVF~~~~sra~~~a~~L~s-----sG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTD-----Lta--RGIDa~~v 341 (980)
T KOG4284|consen 274 QALVFCDQISRAEPIATHLKS-----SGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTD-----LTA--RGIDADNV 341 (980)
T ss_pred HHHhhhhhhhhhhHHHHHhhc-----cCCCeEEeccccchhHHHHHHHHhhhceEEEEEecc-----hhh--ccCCcccc
Confidence 456666655555544443332 2788888888877655433 45556799999994 554 47888888
Q ss_pred eEEE
Q 030094 78 EILV 81 (183)
Q Consensus 78 ~~lV 81 (183)
-++|
T Consensus 342 NLVV 345 (980)
T KOG4284|consen 342 NLVV 345 (980)
T ss_pred ceEE
Confidence 8776
No 287
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=67.74 E-value=26 Score=21.54 Aligned_cols=53 Identities=15% Similarity=0.134 Sum_probs=31.5
Q ss_pred EEEEeCcH-HHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcH
Q 030094 2 GMIISPTR-ELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60 (183)
Q Consensus 2 alIl~Ptr-eLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~ 60 (183)
++++||+. ..+.-+.+.+++..+.. ++....-.. ...+- ....++|++++|+.
T Consensus 2 il~vc~~G~~~s~~l~~~l~~~~~~~-~~~~~~~~~--~~~~~---~~~~~~dliitt~~ 55 (84)
T cd00133 2 ILVVCGSGIGSSSMLAEKLEKAAKEL-GIEVKVEAQ--GLSEV---IDLADADLIISTVP 55 (84)
T ss_pred EEEECCCcHhHHHHHHHHHHHHHHHC-CCeEEEEEc--ccchh---hhcCCccEEEECCc
Confidence 67899988 56666667777766554 443322222 12110 12357999999994
No 288
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=67.69 E-value=41 Score=30.64 Aligned_cols=65 Identities=6% Similarity=0.080 Sum_probs=43.6
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHH-hcCCcEEEeCcHHHHHHHHhcCCcCCC---Cc
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIE-EEGANLLIGTPGRLYDIMERMDVLDFR---NL 77 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~~~IiV~TP~~l~~~l~~~~~~~l~---~l 77 (183)
+||.|.|.+-+..+.+.+.+. ++.+..+.|+....+..-... ...-.|+|+|- +.. .++|.. .+
T Consensus 476 vLIft~t~~~se~L~~~L~~~-----gi~~~~Lhg~~~~rE~~ii~~ag~~g~VlVATd-----mAg--RGtDI~l~~~V 543 (656)
T PRK12898 476 VLVGTRSVAASERLSALLREA-----GLPHQVLNAKQDAEEAAIVARAGQRGRITVATN-----MAG--RGTDIKLEPGV 543 (656)
T ss_pred EEEEeCcHHHHHHHHHHHHHC-----CCCEEEeeCCcHHHHHHHHHHcCCCCcEEEEcc-----chh--cccCcCCccch
Confidence 799999999999888877764 677888888754333222221 22357999994 443 466655 55
Q ss_pred e
Q 030094 78 E 78 (183)
Q Consensus 78 ~ 78 (183)
+
T Consensus 544 ~ 544 (656)
T PRK12898 544 A 544 (656)
T ss_pred h
Confidence 5
No 289
>PRK07413 hypothetical protein; Validated
Probab=67.42 E-value=11 Score=31.94 Aligned_cols=54 Identities=15% Similarity=0.270 Sum_probs=45.8
Q ss_pred CCCceEEEEcccchhhccch--HHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHh
Q 030094 74 FRNLEILVLDEADRLLDMGF--QKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~--~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~ 127 (183)
-...+++|+||+-..++.++ .+.+..+++..|...-+|+..-..|+++.++++.
T Consensus 123 sg~ydlvILDEi~~Al~~gll~~eevl~~L~~rP~~~evVLTGR~ap~~Lie~ADl 178 (382)
T PRK07413 123 SGLYSVVVLDELNPVLDLGLLPVDEVVNTLKSRPEGLEIIITGRAAPQSLLDIADL 178 (382)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHhCCe
Confidence 35678999999999988775 5788888898888889999999999998888774
No 290
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.28 E-value=9.8 Score=34.63 Aligned_cols=39 Identities=15% Similarity=0.272 Sum_probs=25.1
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEe
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~S 114 (183)
.+-+++||||+|.|-...+. .+.+.++.-++...+|+.|
T Consensus 123 gr~KViIIDEah~Ls~~AaN-ALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFN-AMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred CCceEEEEEChHhcCHHHHH-HHHHhhccCCCCceEEEEe
Confidence 45789999999998654433 3334455445566666654
No 291
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=66.77 E-value=9 Score=28.72 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=30.1
Q ss_pred eEEEEcccchhhccchHHHHHHHHHhCCC-CCeEEEEe
Q 030094 78 EILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLFS 114 (183)
Q Consensus 78 ~~lVvDEad~ll~~~~~~~l~~i~~~l~~-~~Q~v~~S 114 (183)
.++++||.+.-++......+..++..+.+ +.|+++.|
T Consensus 259 ~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitT 296 (303)
T PF13304_consen 259 SILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITT 296 (303)
T ss_dssp SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred eEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeC
Confidence 78999999999988777777777777765 78997754
No 292
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=66.76 E-value=19 Score=33.62 Aligned_cols=113 Identities=15% Similarity=0.207 Sum_probs=56.8
Q ss_pred EEEeCcHHHHHHHHHHHHHhhhh-----CCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHH-----------H
Q 030094 3 MIISPTRELSSQIYHVAQPFIST-----LPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDI-----------M 66 (183)
Q Consensus 3 lIl~PtreLa~Qi~~~~~~l~~~-----~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~-----------l 66 (183)
+|+|||.+.=.-++........+ +.+.+.-.+.-....... ....+++|.+++-|-.....- +
T Consensus 108 IivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~~~-~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~ 186 (985)
T COG3587 108 IIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIEKF-KFKSNNKPCVLLIFVSAFNKEEINANMINSESM 186 (985)
T ss_pred EEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHHHHH-hhccCCCceEEEEehhhhccccccccccchhhh
Confidence 78999987655444333333322 223444333322221111 122245677887775443221 1
Q ss_pred HhcCC-------cC-CCCce-EEEEcccchhhcc-chHHHHHHHHHhCCCCCe-EEEEeecCChHHH
Q 030094 67 ERMDV-------LD-FRNLE-ILVLDEADRLLDM-GFQKQISYIISRLPKLRR-TGLFSATQTEAVE 122 (183)
Q Consensus 67 ~~~~~-------~~-l~~l~-~lVvDEad~ll~~-~~~~~l~~i~~~l~~~~Q-~v~~SAT~~~~v~ 122 (183)
...+. ++ +..++ ++|+||=|+|... -+...+ ..+ ++| ++=||||+.++..
T Consensus 187 ~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~~k~~~~i----~~l--~pl~ilRfgATfkd~y~ 247 (985)
T COG3587 187 ENTNLFNGATSPVDALASMRPIVIVDEPHRFLGDDKTYGAI----KQL--NPLLILRFGATFKDEYN 247 (985)
T ss_pred cccCccccccCHHHHHHhcCCEEEecChhhcccchHHHHHH----Hhh--CceEEEEecccchhhhc
Confidence 11010 11 23344 6899999999763 122222 222 455 4559999998866
No 293
>PRK06526 transposase; Provisional
Probab=66.66 E-value=24 Score=27.97 Aligned_cols=92 Identities=10% Similarity=0.079 Sum_probs=51.8
Q ss_pred hcCCcEEEeCcHHHHHHHHhc---CCc-----CCCCceEEEEcccchhhccc-hHHHHHHHHHhCCCCCeEEEEeecCCh
Q 030094 49 EEGANLLIGTPGRLYDIMERM---DVL-----DFRNLEILVLDEADRLLDMG-FQKQISYIISRLPKLRRTGLFSATQTE 119 (183)
Q Consensus 49 ~~~~~IiV~TP~~l~~~l~~~---~~~-----~l~~l~~lVvDEad~ll~~~-~~~~l~~i~~~l~~~~Q~v~~SAT~~~ 119 (183)
..|..++..|...+.+-+... +.+ .+.+..++|+||++..-... -...+..++...-...-+++.|..-..
T Consensus 124 ~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~ 203 (254)
T PRK06526 124 QAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFG 203 (254)
T ss_pred HCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHH
Confidence 457788888887776666421 111 25667899999999864222 233445555433223446666665544
Q ss_pred HHH----------HHHHhhCCCCeEEEEccC
Q 030094 120 AVE----------ELSKAGLRNPVRVEVRAE 140 (183)
Q Consensus 120 ~v~----------~~~~~~~~~~~~i~~~~~ 140 (183)
+.. .+.+........|.+..+
T Consensus 204 ~w~~~~~d~~~a~ai~dRl~~~~~~i~~~g~ 234 (254)
T PRK06526 204 RWGEVFGDDVVAAAMIDRLVHHAEVISLKGD 234 (254)
T ss_pred HHHHHcCChHHHHHHHHHHhcCceEEeecCC
Confidence 322 234555566666665543
No 294
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=66.41 E-value=37 Score=28.64 Aligned_cols=114 Identities=13% Similarity=0.195 Sum_probs=55.6
Q ss_pred eCcHHHHHHHHHHHHHhhhhC-CCceEEEEEcCcchHH------HHHHHHhc--CCcEEEeCcHHHHHHHHh---cCCc-
Q 030094 6 SPTRELSSQIYHVAQPFISTL-PDVKSVLLVGGVEVKA------DVKKIEEE--GANLLIGTPGRLYDIMER---MDVL- 72 (183)
Q Consensus 6 ~PtreLa~Qi~~~~~~l~~~~-~~~~~~~~~g~~~~~~------~~~~l~~~--~~~IiV~TP~~l~~~l~~---~~~~- 72 (183)
.+...+|...... +.... .......++|+..... -.+.+... +..++..|...+...+.. .+..
T Consensus 115 g~~n~~a~~~~~~---~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~ 191 (405)
T TIGR00362 115 GKSNRLAHAAALA---VAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKME 191 (405)
T ss_pred CCcHHHHHHHHHH---HHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHH
Confidence 4555655544443 33221 1234567777654221 11122222 466777776665432211 0111
Q ss_pred ----CCCCceEEEEcccchhhccc-hHHHHHHHHHhC-CCCCeEEEEeecCChHHH
Q 030094 73 ----DFRNLEILVLDEADRLLDMG-FQKQISYIISRL-PKLRRTGLFSATQTEAVE 122 (183)
Q Consensus 73 ----~l~~l~~lVvDEad~ll~~~-~~~~l~~i~~~l-~~~~Q~v~~SAT~~~~v~ 122 (183)
.+.+++++++||+|.+.+.. ....+-+++..+ ..+.|+++.|...+..+.
T Consensus 192 ~~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~ 247 (405)
T TIGR00362 192 EFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELP 247 (405)
T ss_pred HHHHHHHhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHh
Confidence 14567899999999986532 233444555444 245666654443444443
No 295
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=66.40 E-value=85 Score=27.01 Aligned_cols=119 Identities=12% Similarity=0.254 Sum_probs=59.9
Q ss_pred EeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHH------HHHHHhc--CCcEEEeCcHHHHHHHHh-c--CCcC
Q 030094 5 ISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKAD------VKKIEEE--GANLLIGTPGRLYDIMER-M--DVLD 73 (183)
Q Consensus 5 l~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~------~~~l~~~--~~~IiV~TP~~l~~~l~~-~--~~~~ 73 (183)
+.|..++|.... .++...........++|+.....- .+.+... +..++..|...+..-+.. . +...
T Consensus 109 ~g~~n~~a~~~~---~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~ 185 (440)
T PRK14088 109 VGPGNSFAYHAA---LEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLN 185 (440)
T ss_pred cCCchHHHHHHH---HHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHH
Confidence 345666665433 333222112345778876542211 1122222 457787777775443321 0 1110
Q ss_pred -----C-CCceEEEEcccchhhccc-hHHHHHHHHHhCC-CCCeEEEEeecCChHHHHHHH
Q 030094 74 -----F-RNLEILVLDEADRLLDMG-FQKQISYIISRLP-KLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 -----l-~~l~~lVvDEad~ll~~~-~~~~l~~i~~~l~-~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
. .+.+++++||+|.+.+.. ....+.+++..+. ...|+++.|..-+.++..+..
T Consensus 186 ~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~ 246 (440)
T PRK14088 186 EFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQD 246 (440)
T ss_pred HHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHH
Confidence 1 257899999999987542 2344555555443 345666655555555554433
No 296
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=66.38 E-value=8.9 Score=35.18 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=28.4
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEee
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SA 115 (183)
...+++|+|||.++ + ...+..+++.++...|+++++=
T Consensus 415 ~~~~llIvDEaSMv-d---~~~~~~Ll~~~~~~~rlilvGD 451 (720)
T TIGR01448 415 IDCDLLIVDESSMM-D---TWLALSLLAALPDHARLLLVGD 451 (720)
T ss_pred ccCCEEEEeccccC-C---HHHHHHHHHhCCCCCEEEEECc
Confidence 45689999999886 2 4466778888888888888653
No 297
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=66.26 E-value=28 Score=29.72 Aligned_cols=68 Identities=13% Similarity=0.248 Sum_probs=48.9
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
.+|.|.|..-+..+.-.++.+ ++...-+.|..+...... ..+.+.++|+|||- +.. .++|..+++
T Consensus 303 ~iVF~~t~~tt~~la~~L~~l-----g~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TD------VaS-RGLDip~Vd 370 (476)
T KOG0330|consen 303 VIVFCNTCNTTRFLALLLRNL-----GFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTD------VAS-RGLDIPHVD 370 (476)
T ss_pred EEEEEeccchHHHHHHHHHhc-----CcceecccchhhHHHHHHHHHHHhccCCcEEEecc------hhc-ccCCCCCce
Confidence 477888888777777666665 677777788766544433 34456799999995 334 689999999
Q ss_pred EEE
Q 030094 79 ILV 81 (183)
Q Consensus 79 ~lV 81 (183)
++|
T Consensus 371 ~VV 373 (476)
T KOG0330|consen 371 VVV 373 (476)
T ss_pred EEE
Confidence 887
No 298
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=65.59 E-value=8.6 Score=34.11 Aligned_cols=40 Identities=15% Similarity=0.170 Sum_probs=32.4
Q ss_pred CceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEee
Q 030094 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (183)
Q Consensus 76 ~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SA 115 (183)
..+++|+||.+.-++......+..++..+.+.+|+++.|-
T Consensus 462 ~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH 501 (563)
T TIGR00634 462 AVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTH 501 (563)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 4689999999999988788888888888876777776544
No 299
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=65.53 E-value=13 Score=33.70 Aligned_cols=23 Identities=22% Similarity=0.548 Sum_probs=20.9
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhh
Q 030094 2 GMIISPTRELSSQIYHVAQPFIS 24 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~ 24 (183)
.|||+|++.+|.|.++.++.+..
T Consensus 57 ~Lvi~~n~~~A~ql~~el~~f~p 79 (655)
T TIGR00631 57 TLVIAHNKTLAAQLYNEFKEFFP 79 (655)
T ss_pred EEEEECCHHHHHHHHHHHHHhCC
Confidence 58999999999999999999853
No 300
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=65.49 E-value=11 Score=35.82 Aligned_cols=37 Identities=24% Similarity=0.166 Sum_probs=28.8
Q ss_pred ceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEee
Q 030094 77 LEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (183)
Q Consensus 77 l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SA 115 (183)
--|+|+||+|.-||......+..-++ ..+.|+|+.|=
T Consensus 1074 aPFfvlDEiDAALDntNi~kvasyIr--~~~~Q~IvISL 1110 (1141)
T KOG0018|consen 1074 APFFVLDEIDAALDNTNIGKVASYIR--SSNFQFIVISL 1110 (1141)
T ss_pred CCceehhhHHHHhhhccHHHHHHHHh--cCCceEEEEec
Confidence 34999999999999876666666555 55789999874
No 301
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=65.44 E-value=29 Score=21.32 Aligned_cols=51 Identities=18% Similarity=0.354 Sum_probs=37.9
Q ss_pred CceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEccc
Q 030094 28 DVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEA 85 (183)
Q Consensus 28 ~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEa 85 (183)
++++..+.|+.+.++... .......+|+|+|- .+ . .++|+..+..+|+=+.
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~-----~~-~-~Gid~~~~~~vi~~~~ 60 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATD-----IL-G-EGIDLPDASHVIFYDP 60 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESC-----GG-T-TSSTSTTESEEEESSS
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeec-----cc-c-cccccccccccccccc
Confidence 788999999877555444 34456789999995 33 2 5899999999987666
No 302
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=64.73 E-value=5.7 Score=32.16 Aligned_cols=65 Identities=28% Similarity=0.272 Sum_probs=50.9
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCC-eEEEEeecCChHHHHHHHh--hCCCCeEEEEc
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLR-RTGLFSATQTEAVEELSKA--GLRNPVRVEVR 138 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~-Q~v~~SAT~~~~v~~~~~~--~~~~~~~i~~~ 138 (183)
+.+-+++++||--.=+|......+..+++.+.+.. .++++|.....+++.+++. ++++-..+...
T Consensus 152 ~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g 219 (293)
T COG1131 152 LHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEG 219 (293)
T ss_pred hcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeC
Confidence 45668999999998888878889999999887766 5999999999998888763 34455444433
No 303
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=64.53 E-value=44 Score=25.98 Aligned_cols=91 Identities=19% Similarity=0.155 Sum_probs=63.5
Q ss_pred HHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHh--cCCcCCCCceEEEEcccchhhccchH
Q 030094 17 HVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER--MDVLDFRNLEILVLDEADRLLDMGFQ 94 (183)
Q Consensus 17 ~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~--~~~~~l~~l~~lVvDEad~ll~~~~~ 94 (183)
++...+.... +.++..-.|....-.+. .+++.||+.|+.+.-...+-. ++.++.++++.+-+-|+-.+...|..
T Consensus 37 ~vA~~~~ekt-g~kVnvt~GPq~tW~~k---AkknADilfgaseqsalaia~~~~~~fs~~~i~ply~R~aiIlvkkgNP 112 (252)
T COG4588 37 DVAKKYEEKT-GIKVNVTAGPQATWNEK---AKKNADILFGASEQSALAIAEDHKDSFSEKNIQPLYLRPAIILVKKGNP 112 (252)
T ss_pred HHHHHHHHHh-CeEEEEecCCcchhhhh---hhccCceeecccHHHHHHHHHhccccccccccceeeeeceEEEecCCCc
Confidence 3444555555 78888878766543332 246899999998875554433 24488899999999999888888878
Q ss_pred HHHHHHHHhCCCCCeEE
Q 030094 95 KQISYIISRLPKLRRTG 111 (183)
Q Consensus 95 ~~l~~i~~~l~~~~Q~v 111 (183)
..++.+-..+.+...++
T Consensus 113 knIk~~eDll~~gi~iv 129 (252)
T COG4588 113 KNIKGFEDLLKPGIGIV 129 (252)
T ss_pred cccccHHHHhcCCceEE
Confidence 88888777776554444
No 304
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=64.25 E-value=15 Score=27.89 Aligned_cols=77 Identities=19% Similarity=0.343 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhc--CCcCCCCceEEEEcccc
Q 030094 9 RELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM--DVLDFRNLEILVLDEAD 86 (183)
Q Consensus 9 reLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~--~~~~l~~l~~lVvDEad 86 (183)
.++|..+.+.+.+....- +.-...+.||. ||..+.+.+... ..++.+++.++.+||--
T Consensus 3 ~~~a~~i~~~i~~~i~~~-~~~~i~LsgGs-------------------tp~~~y~~L~~~~~~~i~w~~v~~~~~DEr~ 62 (199)
T PF01182_consen 3 QAVAEAIAEAIEEAIAER-GRAVIALSGGS-------------------TPKPLYQELAKLHKERIDWSRVHFFNVDERV 62 (199)
T ss_dssp HHHHHHHHHHHHHHHHHC-SSEEEEE--SC-------------------THHHHHHHHHHHHHTCSCGGGEEEEESEEES
T ss_pred HHHHHHHHHHHHHHHHHC-CCEEEEEcCCH-------------------HHHHHHHHHhhhccccCChhHeEEEeCcccc
Confidence 456666666666665543 33344455544 444444444331 35889999999999986
Q ss_pred hhhc--cchHHHHH-HHHHhCC
Q 030094 87 RLLD--MGFQKQIS-YIISRLP 105 (183)
Q Consensus 87 ~ll~--~~~~~~l~-~i~~~l~ 105 (183)
.-.+ .++...++ .+++.++
T Consensus 63 v~~~~~~Sn~~~~~~~l~~~~~ 84 (199)
T PF01182_consen 63 VPPDDPDSNYRMLREHLLDPLP 84 (199)
T ss_dssp STTTSTTSHHHHHHHHTGGGSG
T ss_pred cCCCCCccHHHHHHHHhhccCC
Confidence 2222 12333343 4566553
No 305
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=64.01 E-value=29 Score=27.73 Aligned_cols=40 Identities=25% Similarity=0.244 Sum_probs=27.9
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEee
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SA 115 (183)
..-+++++||+|.+... ....+..+++..+..+..++.+.
T Consensus 101 ~~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~~ 140 (319)
T PRK00440 101 APFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSCN 140 (319)
T ss_pred CCceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEeC
Confidence 44679999999998543 34566667777666777766553
No 306
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=63.81 E-value=22 Score=30.91 Aligned_cols=34 Identities=18% Similarity=0.375 Sum_probs=25.6
Q ss_pred CCCCceEE-EEcccchhhccc---hHHHHHHHHHhCCC
Q 030094 73 DFRNLEIL-VLDEADRLLDMG---FQKQISYIISRLPK 106 (183)
Q Consensus 73 ~l~~l~~l-VvDEad~ll~~~---~~~~l~~i~~~l~~ 106 (183)
|+.+-+++ .+||||.+++.. +.+.++.+.+.+.+
T Consensus 251 D~dkPklVfFfDEAHLLF~da~kall~~ieqvvrLIRS 288 (502)
T PF05872_consen 251 DLDKPKLVFFFDEAHLLFNDAPKALLDKIEQVVRLIRS 288 (502)
T ss_pred CCCCceEEEEEechhhhhcCCCHHHHHHHHHHHHHhhc
Confidence 67777874 699999999753 67777777777643
No 307
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=63.80 E-value=46 Score=29.87 Aligned_cols=70 Identities=16% Similarity=0.255 Sum_probs=48.6
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHH---HhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l---~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
.||.+.|.-=+.-+++.++++. |++.+..+.|+.+-+...... .....-|++||- ... +++|+..+.
T Consensus 316 ~iVF~SscKqvkf~~e~F~rlr---pg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TD-----v~a--RGLDFpaVd 385 (758)
T KOG0343|consen 316 SIVFLSSCKQVKFLYEAFCRLR---PGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTD-----VAA--RGLDFPAVD 385 (758)
T ss_pred eEEEEehhhHHHHHHHHHHhcC---CCCceeeeccchhHHHHHHHHHHHHHhcceEEEeeh-----hhh--ccCCCcccc
Confidence 3566666666677777777764 688899999988766554432 234677899984 443 578888888
Q ss_pred EEE
Q 030094 79 ILV 81 (183)
Q Consensus 79 ~lV 81 (183)
++|
T Consensus 386 wVi 388 (758)
T KOG0343|consen 386 WVI 388 (758)
T ss_pred eEE
Confidence 876
No 308
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=63.43 E-value=46 Score=22.87 Aligned_cols=75 Identities=7% Similarity=0.043 Sum_probs=48.0
Q ss_pred cEEEeCcHHHHHHHHhcCCc---CCCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhC
Q 030094 53 NLLIGTPGRLYDIMERMDVL---DFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGL 129 (183)
Q Consensus 53 ~IiV~TP~~l~~~l~~~~~~---~l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~ 129 (183)
+|+|+|.+.+.+-+.+.-.. +..+++.+=+.+-+.. ..+...++.+++.++...++++++-=+.....+.+..++
T Consensus 3 ~ili~sHG~~A~gl~~s~~~i~G~~~~i~~i~~~~~~~~--~~~~~~l~~~i~~~~~~~~vivltDl~GGSp~n~a~~~~ 80 (116)
T TIGR00824 3 AIIISGHGQAAIALLKSAEMIFGEQNNVGAVPFVPGENA--ETLQEKYNAALADLDTEEEVLFLVDIFGGSPYNAAARII 80 (116)
T ss_pred EEEEEecHHHHHHHHHHHHHHcCCcCCeEEEEcCCCcCH--HHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHH
Confidence 69999999998877652111 1344555543332222 237888899999988788888877666555555555443
No 309
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=63.34 E-value=11 Score=31.36 Aligned_cols=39 Identities=23% Similarity=0.204 Sum_probs=27.2
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEe
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~S 114 (183)
..-+++||||||.|-.. -...+...++.-+.++-.+++|
T Consensus 140 g~~rVviIDeAd~l~~~-aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 140 GNWRIVIIDPADDMNRN-AANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CCceEEEEEchhhcCHH-HHHHHHHHHhcCCCCceEEEEE
Confidence 46789999999998543 3455666667666666666665
No 310
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=63.17 E-value=58 Score=28.15 Aligned_cols=71 Identities=8% Similarity=0.052 Sum_probs=42.2
Q ss_pred CCcEEEeCcHHHHHHHHhc-----CCc-----CCCCceEEEEcccchhhcc-chHHHHHHHHHhCC-CCCeEEEEeecCC
Q 030094 51 GANLLIGTPGRLYDIMERM-----DVL-----DFRNLEILVLDEADRLLDM-GFQKQISYIISRLP-KLRRTGLFSATQT 118 (183)
Q Consensus 51 ~~~IiV~TP~~l~~~l~~~-----~~~-----~l~~l~~lVvDEad~ll~~-~~~~~l~~i~~~l~-~~~Q~v~~SAT~~ 118 (183)
+..++.-|+..+...+... +.+ .+.++.++++||+|.+-.. ...+.+-+++..+. ...|+++.|-..|
T Consensus 171 ~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P 250 (450)
T PRK14087 171 DLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSP 250 (450)
T ss_pred CCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 5677777777765554320 111 1467889999999987532 23455666666553 3456666555444
Q ss_pred hHH
Q 030094 119 EAV 121 (183)
Q Consensus 119 ~~v 121 (183)
...
T Consensus 251 ~~l 253 (450)
T PRK14087 251 ELL 253 (450)
T ss_pred HHH
Confidence 443
No 311
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=63.16 E-value=12 Score=27.78 Aligned_cols=40 Identities=10% Similarity=0.176 Sum_probs=24.8
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEe
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~S 114 (183)
...-+++|+||+|.+-.. ..+.+...++..++..-+++.+
T Consensus 94 ~~~~kviiide~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 133 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEA-AANALLKTLEEPPPNTLFILIT 133 (188)
T ss_pred cCCeEEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEEE
Confidence 356789999999998543 3444555555544444444443
No 312
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=62.89 E-value=8.1 Score=36.48 Aligned_cols=79 Identities=19% Similarity=0.290 Sum_probs=52.2
Q ss_pred CceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEcccchhhccchHHHHHHHHHhCCCC
Q 030094 28 DVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKL 107 (183)
Q Consensus 28 ~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~ 107 (183)
++.+..-.|| -+++....+ ++|-.=+||=..- +.++ .++--.+.|+||+|.-||.++-.++=++++.--+.
T Consensus 1065 GLEvkV~~G~-iWKeSL~EL-SGGQRSLVALsLI-lamL------~fkPAPlYILDEVDAALDLSHTQNIG~mIkthF~~ 1135 (1174)
T KOG0933|consen 1065 GLEVKVKFGG-IWKESLSEL-SGGQRSLVALSLI-LAML------KFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFTH 1135 (1174)
T ss_pred ceEEEEEeCc-cHHHHHHHh-cCchHHHHHHHHH-HHHH------cCCCCceeehhhhHHhhcchhhhhHHHHHHhhCCC
Confidence 3555555554 355666666 4555555553321 1222 23445699999999999998888888877766678
Q ss_pred CeEEEEee
Q 030094 108 RRTGLFSA 115 (183)
Q Consensus 108 ~Q~v~~SA 115 (183)
.|+|.+|=
T Consensus 1136 sQFIVVSL 1143 (1174)
T KOG0933|consen 1136 SQFIVVSL 1143 (1174)
T ss_pred CeEEEEEc
Confidence 99999985
No 313
>PRK04296 thymidine kinase; Provisional
Probab=62.73 E-value=20 Score=26.87 Aligned_cols=53 Identities=17% Similarity=0.353 Sum_probs=30.3
Q ss_pred EeCcHHHHHHHHhcCCcCCCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeec
Q 030094 56 IGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (183)
Q Consensus 56 V~TP~~l~~~l~~~~~~~l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT 116 (183)
+..+..+.+.+.. .-.+..++|+|||+.+ + .+++..+++.+.+....+++++-
T Consensus 62 ~~~~~~~~~~~~~----~~~~~dvviIDEaq~l-~---~~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 62 VSSDTDIFELIEE----EGEKIDCVLIDEAQFL-D---KEQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred eCChHHHHHHHHh----hCCCCCEEEEEccccC-C---HHHHHHHHHHHHHcCCeEEEEec
Confidence 4555556555533 2345789999999654 2 34466666664444444554443
No 314
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=62.60 E-value=53 Score=26.56 Aligned_cols=115 Identities=11% Similarity=0.264 Sum_probs=64.4
Q ss_pred HHHHHHHHHhhhhCCCceEEEEEcCc----chHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEcccchh
Q 030094 13 SQIYHVAQPFISTLPDVKSVLLVGGV----EVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRL 88 (183)
Q Consensus 13 ~Qi~~~~~~l~~~~~~~~~~~~~g~~----~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEad~l 88 (183)
...++-+.++.+.++++.+...-... ...+..+.+.+.++|+||++-....+.+.. -.-...+.+++++|-.-.-
T Consensus 19 ~~~~~G~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~g~dlIi~~g~~~~~~~~~-vA~~yPd~~F~~~d~~~~~ 97 (306)
T PF02608_consen 19 QSAYEGLKRAEKELDGIEIIYVENVPETDADYEEAIRQLADQGYDLIIGHGFEYSDALQE-VAKEYPDTKFIIIDGYIDA 97 (306)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEES-S-TCHHHHHHHHHHHHTT-SEEEEESGGGHHHHHH-HHTC-TTSEEEEESS---S
T ss_pred HHHHHHHHHHHHHcCCceEEEEecCCccHHHHHHHHHHHHHcCCCEEEEccHHHHHHHHH-HHHHCCCCEEEEEecCcCC
Confidence 34455666666555577777666554 456666677778999999998888887765 3334577889998864332
Q ss_pred h-----ccchH-HHHHHHH----HhCCCCCeEEEEe---ecCChHHHHHHHhh
Q 030094 89 L-----DMGFQ-KQISYII----SRLPKLRRTGLFS---ATQTEAVEELSKAG 128 (183)
Q Consensus 89 l-----~~~~~-~~l~~i~----~~l~~~~Q~v~~S---AT~~~~v~~~~~~~ 128 (183)
- ...|. .+-..+. ..+.+..++-+.+ +.-.+.+..+...|
T Consensus 98 ~~~Nv~~~~f~~~e~~fLaG~~Aa~~tkt~~vg~ig~i~G~~~p~~~~~~~gF 150 (306)
T PF02608_consen 98 PEPNVISITFREEEASFLAGYLAALMTKTGKVGFIGDIGGMDIPPVNRFINGF 150 (306)
T ss_dssp T-TTEEEEEE-HHHHHHHHHHHHHHHHSSTEEEEEEEEES--SCTTHHHHHHH
T ss_pred CCCcEEEEEccccchhHHHHHHHHHHhccCcccccccccCCCcHhHHHHHHHH
Confidence 2 11121 1122222 2223455666666 66666666665544
No 315
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=62.58 E-value=30 Score=30.63 Aligned_cols=71 Identities=15% Similarity=0.285 Sum_probs=50.2
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHH---HhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l---~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
++|.+-|+.-|....-.+ .| + ++++..+.|.-+..+....+ ++..+|++|+|- .- . .++|...++
T Consensus 429 ~ivFv~tKk~AHRl~Ill-GL---l-gl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTD-----vA-s-RGLDI~gV~ 496 (691)
T KOG0338|consen 429 TIVFVRTKKQAHRLRILL-GL---L-GLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATD-----VA-S-RGLDIEGVQ 496 (691)
T ss_pred eEEEEehHHHHHHHHHHH-HH---h-hchhhhhcccccHHHHHHHHHHHHhccCCEEEEec-----hh-h-ccCCcccee
Confidence 577888888887664332 22 2 78888889887766655543 457899999995 33 3 689999999
Q ss_pred EEEEcc
Q 030094 79 ILVLDE 84 (183)
Q Consensus 79 ~lVvDE 84 (183)
.+|==+
T Consensus 497 tVINy~ 502 (691)
T KOG0338|consen 497 TVINYA 502 (691)
T ss_pred EEEecc
Confidence 887333
No 316
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=62.32 E-value=20 Score=32.93 Aligned_cols=66 Identities=21% Similarity=0.339 Sum_probs=41.9
Q ss_pred EEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEcccchhhccchHHHHHHHHHhC
Q 030094 32 VLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRL 104 (183)
Q Consensus 32 ~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l 104 (183)
....||-.-+.+.+.-++ -=|=+=||++..-|+..+..++ ++++||+|.|-+...++--..+++-+
T Consensus 380 R~sLGGvrDEAEIRGHRR---TYIGamPGrIiQ~mkka~~~NP----v~LLDEIDKm~ss~rGDPaSALLEVL 445 (782)
T COG0466 380 RISLGGVRDEAEIRGHRR---TYIGAMPGKIIQGMKKAGVKNP----VFLLDEIDKMGSSFRGDPASALLEVL 445 (782)
T ss_pred EEecCccccHHHhccccc---cccccCChHHHHHHHHhCCcCC----eEEeechhhccCCCCCChHHHHHhhc
Confidence 334555555555443321 2333679999999988566665 89999999997654444445555555
No 317
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=62.30 E-value=8.7 Score=35.78 Aligned_cols=40 Identities=30% Similarity=0.451 Sum_probs=29.9
Q ss_pred cCCcEEEeCcHHHHHHHHh-cCCcCCCCceEEEEcccchhhc
Q 030094 50 EGANLLIGTPGRLYDIMER-MDVLDFRNLEILVLDEADRLLD 90 (183)
Q Consensus 50 ~~~~IiV~TP~~l~~~l~~-~~~~~l~~l~~lVvDEad~ll~ 90 (183)
..+|||.+--..|.+-.-+ ...+++++ ..+|+||||.|-+
T Consensus 221 edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIfDEAHNiEd 261 (945)
T KOG1132|consen 221 EDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIFDEAHNIED 261 (945)
T ss_pred ccCcEEEechhhhcCHhhhccccccccc-cEEEEeccccHHH
Confidence 4689999988877776544 23466666 6899999999864
No 318
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=62.14 E-value=12 Score=27.89 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=30.0
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCC-CCeEEEEee
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLFSA 115 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~-~~Q~v~~SA 115 (183)
.+-+++++||.+.-++......+..++..+.+ .+++++.|-
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 45689999999999988777777776666543 366666654
No 319
>PRK07413 hypothetical protein; Validated
Probab=62.10 E-value=16 Score=30.85 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=43.3
Q ss_pred CCceEEEEcccchhhccch--HHHHHHHHHhCCCCCeEEEEeec-CChHHHHHHHh
Q 030094 75 RNLEILVLDEADRLLDMGF--QKQISYIISRLPKLRRTGLFSAT-QTEAVEELSKA 127 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~--~~~l~~i~~~l~~~~Q~v~~SAT-~~~~v~~~~~~ 127 (183)
...+++|+||+-..++.++ .+.+..+++..|...-+|+..-. .|+++.++++.
T Consensus 304 g~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVLTGR~~ap~~lie~ADl 359 (382)
T PRK07413 304 GLYKTIILDELNPTVDLELLPVEPIVQTLLRKPRDTEVIITGRCKNQPAYFDLASV 359 (382)
T ss_pred CCCCEEEEechHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHhCch
Confidence 5668999999999998875 45888889988888788887776 78888887775
No 320
>PF12846 AAA_10: AAA-like domain
Probab=61.97 E-value=15 Score=28.82 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=23.1
Q ss_pred CCceEEEEcccchhhcc-chHHHHHHHHHhCCCCC
Q 030094 75 RNLEILVLDEADRLLDM-GFQKQISYIISRLPKLR 108 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~-~~~~~l~~i~~~l~~~~ 108 (183)
..-.++++||||.++.. .....+..+++...+..
T Consensus 219 ~~~~~i~iDEa~~~~~~~~~~~~~~~~~~~~Rk~g 253 (304)
T PF12846_consen 219 GRPKIIVIDEAHNFLSNPSGAEFLDELLREGRKYG 253 (304)
T ss_pred CceEEEEeCCccccccccchhhhhhHHHHHHHhcC
Confidence 34457899999999876 34556666666664433
No 321
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=61.96 E-value=14 Score=25.93 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=28.7
Q ss_pred CCCceEEEEcccchhhccc----------hHHHHHHHHHhCCCCCeEEEEeecCCh
Q 030094 74 FRNLEILVLDEADRLLDMG----------FQKQISYIISRLPKLRRTGLFSATQTE 119 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~----------~~~~l~~i~~~l~~~~Q~v~~SAT~~~ 119 (183)
.....++|+||.+.+++.. ....+..+.+...+..-++++.+..++
T Consensus 83 ~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~ 138 (165)
T cd01120 83 RGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPS 138 (165)
T ss_pred CCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCC
Confidence 3567899999999886432 235555566565544555555555443
No 322
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=61.40 E-value=13 Score=34.56 Aligned_cols=42 Identities=17% Similarity=0.289 Sum_probs=25.3
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCC
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~ 118 (183)
.+-+++||||+|.|-...+. .+.++++.-+....+|+ .+|-.
T Consensus 118 gr~KVIIIDEah~LT~~A~N-ALLKtLEEPP~~v~FIL-aTtd~ 159 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFN-AMLKTLEEPPPHVKFIL-ATTDP 159 (830)
T ss_pred CCceEEEEeChhhCCHHHHH-HHHHHHHhcCCCeEEEE-EECCh
Confidence 45689999999998654433 34445555554444444 34433
No 323
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.20 E-value=10 Score=33.29 Aligned_cols=39 Identities=15% Similarity=0.242 Sum_probs=25.7
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEe
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~S 114 (183)
.+-+++++||+|.|-...+ ..+...++..|....+++.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4568999999999865443 34445666666666666543
No 324
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=61.16 E-value=8.4 Score=29.17 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=38.6
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
..+-+++++||--.-+|......+..+++.+.+...++++++.-.+.+..++.
T Consensus 153 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d 205 (214)
T TIGR02673 153 VNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAH 205 (214)
T ss_pred hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcC
Confidence 45668999999999999888888888888764444567776665555555443
No 325
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=60.87 E-value=18 Score=33.62 Aligned_cols=83 Identities=17% Similarity=0.273 Sum_probs=59.1
Q ss_pred EEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHH-HHHHHhcC-----CcCCCC
Q 030094 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMD-----VLDFRN 76 (183)
Q Consensus 3 lIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l-~~~l~~~~-----~~~l~~ 76 (183)
.++...-=||..-.+.+..+..++ ++++.....+.+..++.... .|||.=||-..+ .++++.+- ..-...
T Consensus 125 hvVTvNdYLA~RDae~m~~l~~~L-GlsvG~~~~~m~~~ek~~aY---~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~ 200 (822)
T COG0653 125 HVVTVNDYLARRDAEWMGPLYEFL-GLSVGVILAGMSPEEKRAAY---ACDITYGTNNELGFDYLRDNMVTSQEEKVQRG 200 (822)
T ss_pred EEeeehHHhhhhCHHHHHHHHHHc-CCceeeccCCCChHHHHHHH---hcCceeccccccCcchhhhhhhccHHHhhhcc
Confidence 456666778888888888888888 99999988888666555443 689999998875 22222101 111456
Q ss_pred ceEEEEcccchhh
Q 030094 77 LEILVLDEADRLL 89 (183)
Q Consensus 77 l~~lVvDEad~ll 89 (183)
..+-|+||+|.++
T Consensus 201 ~~faIvDEvDSIL 213 (822)
T COG0653 201 LNFAIVDEVDSIL 213 (822)
T ss_pred CCeEEEcchhhee
Confidence 7899999999986
No 326
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=60.87 E-value=7.8 Score=27.83 Aligned_cols=51 Identities=24% Similarity=0.292 Sum_probs=35.6
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEEL 124 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~ 124 (183)
...-+++++||...=+|......+..++..+....+++++++.-...+..+
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 345689999999998888778888888877654445566655554444433
No 327
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=60.72 E-value=67 Score=29.89 Aligned_cols=54 Identities=15% Similarity=0.085 Sum_probs=36.9
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHh-cCCcEEEeCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEE-EGANLLIGTP 59 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~~IiV~TP 59 (183)
.+||.|.|.+.+..+.+.+.+. ++.+..+.|+...++....... ..-.|+|+|-
T Consensus 426 pvLIft~s~~~se~ls~~L~~~-----gi~~~~L~a~~~~~E~~ii~~ag~~g~VlIATd 480 (762)
T TIGR03714 426 PVLLITGSVEMSEIYSELLLRE-----GIPHNLLNAQNAAKEAQIIAEAGQKGAVTVATS 480 (762)
T ss_pred CEEEEECcHHHHHHHHHHHHHC-----CCCEEEecCCChHHHHHHHHHcCCCCeEEEEcc
Confidence 3799999999998888777664 6777888887664443222222 2237999984
No 328
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=60.72 E-value=11 Score=31.84 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=28.2
Q ss_pred eEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEe
Q 030094 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (183)
Q Consensus 78 ~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~S 114 (183)
+++|+|||-.+ -...++.|+.+.++...+++.+
T Consensus 353 ~FiIIDEaQNL----TpheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 353 SFIIIDEAQNL----TPHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred ceEEEehhhcc----CHHHHHHHHHhccCCCEEEEcC
Confidence 47899999887 4789999999999988888754
No 329
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=60.38 E-value=43 Score=29.15 Aligned_cols=72 Identities=17% Similarity=0.233 Sum_probs=52.6
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchH---HHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVK---ADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~---~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
.|+|+|-|+.-+.-..+.+.+-..+ ..++.++.|..... +.....++.....+|||- . .. +++|...+
T Consensus 507 kaiifcrtk~dcDnLer~~~qkgg~--~~scvclhgDrkP~Erk~nle~Fkk~dvkflictd-----v-aa-rgldi~g~ 577 (725)
T KOG0349|consen 507 KAIIFCRTKQDCDNLERMMNQKGGK--HYSCVCLHGDRKPDERKANLESFKKFDVKFLICTD-----V-AA-RGLDITGL 577 (725)
T ss_pred ceEEEEeccccchHHHHHHHHcCCc--cceeEEEecCCChhHHHHHHHhhhhcCeEEEEEeh-----h-hh-ccccccCC
Confidence 4899999999998888888776543 68899999887543 334444556788999995 2 23 57888777
Q ss_pred eEEE
Q 030094 78 EILV 81 (183)
Q Consensus 78 ~~lV 81 (183)
-++|
T Consensus 578 p~~i 581 (725)
T KOG0349|consen 578 PFMI 581 (725)
T ss_pred ceEE
Confidence 7765
No 330
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=59.72 E-value=33 Score=29.36 Aligned_cols=84 Identities=17% Similarity=0.304 Sum_probs=57.1
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||.|-.+.-+..|++-+- ..++.+..+.||.+.++... ..+.+.-||+|+|- +.. +++|+.+++
T Consensus 424 VLIFaEkK~DVD~IhEYLL-----lKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATD------VAS-KGLDFp~iq 491 (610)
T KOG0341|consen 424 VLIFAEKKADVDDIHEYLL-----LKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATD------VAS-KGLDFPDIQ 491 (610)
T ss_pred eEEEeccccChHHHHHHHH-----HccceeEEeecCcchhHHHHHHHHHhcCCCceEEEec------chh-ccCCCccch
Confidence 4677777776666665332 23788999999988665543 33446789999995 334 789998888
Q ss_pred EEEEcccchhhccchHHHHHHHHHhCC
Q 030094 79 ILVLDEADRLLDMGFQKQISYIISRLP 105 (183)
Q Consensus 79 ~lVvDEad~ll~~~~~~~l~~i~~~l~ 105 (183)
++| +.+...++++-.-+++
T Consensus 492 HVI--------NyDMP~eIENYVHRIG 510 (610)
T KOG0341|consen 492 HVI--------NYDMPEEIENYVHRIG 510 (610)
T ss_pred hhc--------cCCChHHHHHHHHHhc
Confidence 665 4445666766666664
No 331
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=59.52 E-value=8.2 Score=36.97 Aligned_cols=49 Identities=22% Similarity=0.192 Sum_probs=38.4
Q ss_pred eEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhh
Q 030094 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAG 128 (183)
Q Consensus 78 ~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~ 128 (183)
-+.|+||+|.-||.....-+-+-++...++.|+|..|= -+.+=++++..
T Consensus 1219 PlYVMDEIDAALDfkNVSIVanYIkErTkNAQFIIISL--RnnMFELa~rL 1267 (1293)
T KOG0996|consen 1219 PLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISL--RNNMFELANRL 1267 (1293)
T ss_pred CceehhhHHHhhccccchhHHHHHHHhccCCeEEEEEe--hhhHHHHHhhh
Confidence 47899999999998777888887777789999999984 44455555543
No 332
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=59.40 E-value=12 Score=35.64 Aligned_cols=42 Identities=17% Similarity=0.129 Sum_probs=35.3
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeec
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT 116 (183)
....++++||.|.-+|......+..++..+.+.+|++++|.-
T Consensus 1095 ~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~ 1136 (1164)
T TIGR02169 1095 KPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLR 1136 (1164)
T ss_pred CCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECc
Confidence 456899999999999988788888888888778898887664
No 333
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=59.28 E-value=23 Score=28.33 Aligned_cols=61 Identities=21% Similarity=0.246 Sum_probs=35.8
Q ss_pred CcEEEeCcHHHHH----------HHHhcCCcC--CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEe
Q 030094 52 ANLLIGTPGRLYD----------IMERMDVLD--FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (183)
Q Consensus 52 ~~IiV~TP~~l~~----------~l~~~~~~~--l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~S 114 (183)
+|++.-+|..... +.+. .... ....+++++||||.|... -...+...++.-+.++.+++.+
T Consensus 74 ~d~lel~~s~~~~~~i~~~~vr~~~~~-~~~~~~~~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 74 PDFLELNPSDLRKIDIIVEQVRELAEF-LSESPLEGGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CceEEecccccCCCcchHHHHHHHHHH-hccCCCCCCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEc
Confidence 6888777654322 2222 2222 267899999999999653 3455555555545555555544
No 334
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=58.94 E-value=20 Score=24.22 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=19.2
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhC
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRL 104 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l 104 (183)
..+..++++||++.+.. .....+..++...
T Consensus 82 ~~~~~~lilDe~~~~~~-~~~~~~~~~i~~~ 111 (151)
T cd00009 82 KAKPGVLFIDEIDSLSR-GAQNALLRVLETL 111 (151)
T ss_pred cCCCeEEEEeChhhhhH-HHHHHHHHHHHhc
Confidence 45568999999999732 2344455555554
No 335
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=58.27 E-value=18 Score=29.21 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=27.8
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEee
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SA 115 (183)
..-+++++||+|.+-. .....+..+++..+..+++++.+.
T Consensus 124 ~~~~vlilDe~~~l~~-~~~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRE-DAQQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred CCCcEEEEeCcccCCH-HHHHHHHHHHHhccCCCeEEEEeC
Confidence 4457999999998743 345567777777766677666543
No 336
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=58.08 E-value=23 Score=32.08 Aligned_cols=23 Identities=17% Similarity=0.511 Sum_probs=20.6
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhh
Q 030094 2 GMIISPTRELSSQIYHVAQPFIS 24 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~ 24 (183)
+|||+|+.+.|.|+++.++.+..
T Consensus 60 vLIVt~~~~~A~~l~~dL~~~~~ 82 (652)
T PRK05298 60 TLVLAHNKTLAAQLYSEFKEFFP 82 (652)
T ss_pred EEEEECCHHHHHHHHHHHHHhcC
Confidence 68999999999999999988853
No 337
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=58.01 E-value=23 Score=26.50 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=25.2
Q ss_pred eEEEEcccchhh-c----cchHHHHHHHHHhCCC-CCeEEEEeecC
Q 030094 78 EILVLDEADRLL-D----MGFQKQISYIISRLPK-LRRTGLFSATQ 117 (183)
Q Consensus 78 ~~lVvDEad~ll-~----~~~~~~l~~i~~~l~~-~~Q~v~~SAT~ 117 (183)
-++|+||+|.+. . .++...+..+++.... ....++++++-
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 688999999998 2 3466777777777432 33444455544
No 338
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=58.01 E-value=12 Score=28.42 Aligned_cols=52 Identities=23% Similarity=0.289 Sum_probs=38.9
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
..+-+++++||--.-+|......+..+++.+.+. .+++++..-.+.+..++.
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d 200 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKG-RSIILTTHSMDEAEALCD 200 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHHhcC
Confidence 4667899999999999988888888888887654 567766665555555443
No 339
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=57.31 E-value=18 Score=27.70 Aligned_cols=38 Identities=24% Similarity=0.216 Sum_probs=33.3
Q ss_pred ceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEe
Q 030094 77 LEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (183)
Q Consensus 77 l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~S 114 (183)
-+.+++||...-++......+..+++.+.+..+++++|
T Consensus 150 p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs 187 (212)
T cd03274 150 TPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVIS 187 (212)
T ss_pred CCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 47999999999999888889999888887778888887
No 340
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=57.31 E-value=18 Score=27.26 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=30.6
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEe
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~S 114 (183)
+.-+++++||...-++......+..+++.+.+..++++.|
T Consensus 134 ~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiit 173 (197)
T cd03278 134 RPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVIT 173 (197)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEE
Confidence 3457999999999998877888888888876655555543
No 341
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=57.14 E-value=16 Score=32.34 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=27.9
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEe
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~S 114 (183)
...-+++|+||||.|-.. ....+...++..|+.+.+++++
T Consensus 115 ~~~~KVvIIDEad~Lt~~-A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKE-AFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHH-HHHHHHHHHhhcCCceEEEEEE
Confidence 356789999999998643 3445556666667777777655
No 342
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=56.95 E-value=39 Score=26.30 Aligned_cols=56 Identities=13% Similarity=0.229 Sum_probs=35.3
Q ss_pred eCcHHHHHHHHhcCCcCCCCceEEEEcccchhhcc----chHHHH-HHHHHhCC-CCCeEEEEee
Q 030094 57 GTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDM----GFQKQI-SYIISRLP-KLRRTGLFSA 115 (183)
Q Consensus 57 ~TP~~l~~~l~~~~~~~l~~l~~lVvDEad~ll~~----~~~~~l-~~i~~~l~-~~~Q~v~~SA 115 (183)
+||..+++.+.. ..++.+++.++-+||-- +.. ++...+ +.+++.++ +..|+..+..
T Consensus 38 stp~~~y~~L~~-~~i~w~~v~~f~~DER~--Vp~~~~~SN~~~~~~~Ll~~~~i~~~~i~~~~~ 99 (233)
T TIGR01198 38 RSPIALLEALAA-QPLDWSRIHLFLGDERY--VPLDHADSNTGLAREALLDRVAIPASNIHPMPT 99 (233)
T ss_pred ccHHHHHHHHhh-CCCCcceEEEEEecccc--cCCCCccchHHHHHHHHhccCCCChhheeeCCC
Confidence 467777777766 57899999999999953 321 233333 45667665 3345555543
No 343
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=56.38 E-value=19 Score=31.94 Aligned_cols=23 Identities=17% Similarity=0.511 Sum_probs=21.1
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhh
Q 030094 2 GMIISPTRELSSQIYHVAQPFIS 24 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~ 24 (183)
+||++|++-||.|.|+.++.|..
T Consensus 60 tLV~AhNKTLAaQLy~Efk~fFP 82 (663)
T COG0556 60 TLVLAHNKTLAAQLYSEFKEFFP 82 (663)
T ss_pred eEEEecchhHHHHHHHHHHHhCc
Confidence 68999999999999999999864
No 344
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=56.22 E-value=15 Score=28.70 Aligned_cols=42 Identities=24% Similarity=0.277 Sum_probs=33.7
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeec
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT 116 (183)
..-+++++||-..-++......+..+++.+.+..++++.|-.
T Consensus 187 ~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~ 228 (251)
T cd03273 187 KPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLK 228 (251)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 345899999999999887788888888877667777777765
No 345
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=56.05 E-value=19 Score=30.14 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=28.3
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecC
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~ 117 (183)
-..-+++|+||+|.|- ......+.+.++.-+..+.++++|...
T Consensus 139 ~~~~kVviIDead~m~-~~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 139 EGGWRVVIVDTADEMN-ANAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred cCCCEEEEEechHhcC-HHHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 3566899999999984 334555666666665566666655443
No 346
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=55.61 E-value=38 Score=26.08 Aligned_cols=56 Identities=16% Similarity=0.259 Sum_probs=32.9
Q ss_pred eCcHHHHHHHHhcCCcCCCCceEEEEcccchhhc----cchHHHHH-HHHHhCCCC-CeEEEEe
Q 030094 57 GTPGRLYDIMERMDVLDFRNLEILVLDEADRLLD----MGFQKQIS-YIISRLPKL-RRTGLFS 114 (183)
Q Consensus 57 ~TP~~l~~~l~~~~~~~l~~l~~lVvDEad~ll~----~~~~~~l~-~i~~~l~~~-~Q~v~~S 114 (183)
+||..+++.+.+...++.+++.++-+||-- +. .++...++ .+++.++.. .++..+-
T Consensus 33 stp~~~y~~L~~~~~i~w~~v~~f~~DEr~--Vp~~~~~Sn~~~~~~~ll~~~~~~~~~v~~~~ 94 (219)
T cd01400 33 STPKPLYELLAAAPALDWSKVHVFLGDERC--VPPDDPDSNYRLAREALLSHVAIPAANIHPIP 94 (219)
T ss_pred ccHHHHHHHhccccCCCCceEEEEEeeccc--cCCCCcccHHHHHHHHhhccCCCCHhhEEeCC
Confidence 356666666655124889999999999953 32 12444454 456665532 3455444
No 347
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=55.32 E-value=67 Score=29.10 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=42.0
Q ss_pred CCcEEEeCcHHHHHHHHh---cCC---c--CCCCceEEEEcccchhhccc-hHHHHHHHHHhCCC-CCeEEEEeecCChH
Q 030094 51 GANLLIGTPGRLYDIMER---MDV---L--DFRNLEILVLDEADRLLDMG-FQKQISYIISRLPK-LRRTGLFSATQTEA 120 (183)
Q Consensus 51 ~~~IiV~TP~~l~~~l~~---~~~---~--~l~~l~~lVvDEad~ll~~~-~~~~l~~i~~~l~~-~~Q~v~~SAT~~~~ 120 (183)
+..++.-|...+..-+.. .+. + .+.++.+|+|||+|.+.... ....+-++++.+.. +.|+++.|-..+.+
T Consensus 344 g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~e 423 (617)
T PRK14086 344 GTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQ 423 (617)
T ss_pred CCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHh
Confidence 567777777665533221 011 1 14678899999999986533 34555566665543 56777755554444
Q ss_pred H
Q 030094 121 V 121 (183)
Q Consensus 121 v 121 (183)
+
T Consensus 424 L 424 (617)
T PRK14086 424 L 424 (617)
T ss_pred h
Confidence 3
No 348
>PRK04132 replication factor C small subunit; Provisional
Probab=55.29 E-value=36 Score=31.96 Aligned_cols=37 Identities=27% Similarity=0.300 Sum_probs=25.4
Q ss_pred CceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEE
Q 030094 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLF 113 (183)
Q Consensus 76 ~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~ 113 (183)
+-+++|+||||.|-. +-...+..+++.-+..+.+++.
T Consensus 630 ~~KVvIIDEaD~Lt~-~AQnALLk~lEep~~~~~FILi 666 (846)
T PRK04132 630 SFKIIFLDEADALTQ-DAQQALRRTMEMFSSNVRFILS 666 (846)
T ss_pred CCEEEEEECcccCCH-HHHHHHHHHhhCCCCCeEEEEE
Confidence 458999999999954 3466666777765555554444
No 349
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=55.05 E-value=14 Score=27.81 Aligned_cols=53 Identities=32% Similarity=0.364 Sum_probs=38.0
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
..+-+++++||--.-+|......+..+++.+.+...+++++..-.+.+..++.
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d 196 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCD 196 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhh
Confidence 45568999999999998888888888887765434466666655555555554
No 350
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=54.98 E-value=43 Score=26.27 Aligned_cols=62 Identities=15% Similarity=0.284 Sum_probs=34.2
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEE--cCcchH----HHHH----HHHhcCCcEEEeCcHHHHHH
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLV--GGVEVK----ADVK----KIEEEGANLLIGTPGRLYDI 65 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~--g~~~~~----~~~~----~l~~~~~~IiV~TP~~l~~~ 65 (183)
+-++|| +.|..|.++.+.+-.+..-+-++..+- ...... +... ... ..-.|+++||+.+..+
T Consensus 73 vrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~-~~~gill~~PEhilSf 144 (229)
T PF12340_consen 73 VRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECM-RSGGILLATPEHILSF 144 (229)
T ss_pred EEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHH-HcCCEEEeChHHHHHH
Confidence 446666 458888888887765544344444332 222211 1111 111 2345999999987655
No 351
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=54.92 E-value=76 Score=30.92 Aligned_cols=76 Identities=12% Similarity=0.249 Sum_probs=45.2
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhh-hCC---CceEEEEEcCcchHH-HHHHHHh-cCCcEEEeCcHHHHHHHHhcCCcCCC
Q 030094 2 GMIISPTRELSSQIYHVAQPFIS-TLP---DVKSVLLVGGVEVKA-DVKKIEE-EGANLLIGTPGRLYDIMERMDVLDFR 75 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~-~~~---~~~~~~~~g~~~~~~-~~~~l~~-~~~~IiV~TP~~l~~~l~~~~~~~l~ 75 (183)
+||+|.+++=|..+.+.+.+... .++ .-.+..++|+....+ ......+ ..|.|+|++ +++. .++|..
T Consensus 701 tiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~~~~~li~~Fk~~~~p~IlVsv-----dmL~--TG~DvP 773 (1123)
T PRK11448 701 TLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSIDKPDQLIRRFKNERLPNIVVTV-----DLLT--TGIDVP 773 (1123)
T ss_pred EEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCccchHHHHHHHhCCCCCeEEEEe-----cccc--cCCCcc
Confidence 68999999999988888776432 112 234455666654322 2333322 235677776 3443 467777
Q ss_pred CceEEEEcc
Q 030094 76 NLEILVLDE 84 (183)
Q Consensus 76 ~l~~lVvDE 84 (183)
.|..+|+..
T Consensus 774 ~v~~vVf~r 782 (1123)
T PRK11448 774 SICNLVFLR 782 (1123)
T ss_pred cccEEEEec
Confidence 777766554
No 352
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=54.83 E-value=49 Score=29.75 Aligned_cols=53 Identities=11% Similarity=0.179 Sum_probs=40.0
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHH---HHHHhcCCcEEEeCc
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADV---KKIEEEGANLLIGTP 59 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~---~~l~~~~~~IiV~TP 59 (183)
++|-|.||--|.++++.+..- ++++....||....+.. .....+...|+|||-
T Consensus 233 GIIYc~sRk~~E~ia~~L~~~-----g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~ 288 (590)
T COG0514 233 GIIYCLTRKKVEELAEWLRKN-----GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATN 288 (590)
T ss_pred eEEEEeeHHhHHHHHHHHHHC-----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEec
Confidence 589999999999888877664 67888888887654332 233356789999995
No 353
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.81 E-value=23 Score=33.48 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=28.2
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHH
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~ 122 (183)
.+-+++||||||.|-.. -...+.++++.-|....+++. +|-+..+.
T Consensus 118 gk~KViIIDEAh~LT~e-AqNALLKtLEEPP~~vrFILa-TTe~~kLl 163 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRS-SFNALLKTLEEPPEHVKFLLA-TTDPQKLP 163 (944)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhccCCCeEEEEE-CCCchhch
Confidence 45689999999998533 344444555555555555554 55554443
No 354
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=54.68 E-value=12 Score=28.32 Aligned_cols=52 Identities=21% Similarity=0.269 Sum_probs=37.4
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELS 125 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~ 125 (183)
..+-+++++||--.-+|......+..++..+.+...++++++.-.+.+..++
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~ 201 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELA 201 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhC
Confidence 4566899999999989888888888888777544456777666555554443
No 355
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=54.60 E-value=56 Score=30.52 Aligned_cols=53 Identities=15% Similarity=0.069 Sum_probs=36.4
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHh-cCCcEEEeCc
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEE-EGANLLIGTP 59 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~~IiV~TP 59 (183)
+||.|.|.+-+..+.+.+.+. ++.+..+.|+....+....... ....|+|||-
T Consensus 431 vLIf~~t~~~se~l~~~L~~~-----gi~~~~L~~~~~~~e~~~i~~ag~~g~VlIATd 484 (790)
T PRK09200 431 VLIGTGSIEQSETFSKLLDEA-----GIPHNLLNAKNAAKEAQIIAEAGQKGAVTVATN 484 (790)
T ss_pred EEEEeCcHHHHHHHHHHHHHC-----CCCEEEecCCccHHHHHHHHHcCCCCeEEEEcc
Confidence 799999999999888877664 6778888887554333222211 2347999984
No 356
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=54.53 E-value=13 Score=28.82 Aligned_cols=52 Identities=17% Similarity=0.289 Sum_probs=38.0
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
.+-+++++||--.-+|......+..+++.+.....++++++.-.+.+..++.
T Consensus 161 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d 212 (250)
T PRK11264 161 MRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVAD 212 (250)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC
Confidence 5568999999999999888888888887775444567776665555555554
No 357
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=54.42 E-value=11 Score=27.86 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=38.1
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCC-CeEEEEeecCChHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKL-RRTGLFSATQTEAVEELS 125 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~-~Q~v~~SAT~~~~v~~~~ 125 (183)
..+-+++++||--.-+|......+..+++.+.++ ..++++++.-.+.+..++
T Consensus 116 ~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~ 168 (178)
T cd03229 116 AMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLA 168 (178)
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc
Confidence 4667899999999999888888888888877554 456777666555544443
No 358
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=54.18 E-value=1.4e+02 Score=25.59 Aligned_cols=116 Identities=13% Similarity=0.216 Sum_probs=69.5
Q ss_pred EEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHH------HHHHHhcCC--cEEEeCcHHHHHH-H---HhcC
Q 030094 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKAD------VKKIEEEGA--NLLIGTPGRLYDI-M---ERMD 70 (183)
Q Consensus 3 lIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~------~~~l~~~~~--~IiV~TP~~l~~~-l---~~~~ 70 (183)
.|+-|+..+|..+...+..-.+. ......++|+.....- -+.....+| .++=.|.+.+..- + .. +
T Consensus 89 Fv~g~~N~~A~aa~~~va~~~g~--~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~-~ 165 (408)
T COG0593 89 FVVGPSNRLAYAAAKAVAENPGG--AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRD-N 165 (408)
T ss_pred eeeCCchHHHHHHHHHHHhccCC--cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHh-h
Confidence 35678888888766666554221 2456777887653211 112222344 5666676664321 1 11 1
Q ss_pred C---c--CCCCceEEEEcccchhhcc-chHHHHHHHHHhCCC-CCeEEEEeecCChHHH
Q 030094 71 V---L--DFRNLEILVLDEADRLLDM-GFQKQISYIISRLPK-LRRTGLFSATQTEAVE 122 (183)
Q Consensus 71 ~---~--~l~~l~~lVvDEad~ll~~-~~~~~l~~i~~~l~~-~~Q~v~~SAT~~~~v~ 122 (183)
. + .. ++.++++|+++.+-.. .....+-+++..+.. ..|+++.|-..|.++.
T Consensus 166 ~~~~Fk~~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 166 EMEKFKEKY-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred hHHHHHHhh-ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 1 1 13 7999999999998654 356677777777753 3488888877777755
No 359
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=54.00 E-value=1.4e+02 Score=25.61 Aligned_cols=131 Identities=14% Similarity=0.159 Sum_probs=74.9
Q ss_pred EEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHH--HHHHHhcCCcEEEeCcHHHHHHHHhcCCcC--CCCce
Q 030094 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKAD--VKKIEEEGANLLIGTPGRLYDIMERMDVLD--FRNLE 78 (183)
Q Consensus 3 lIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~--~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~--l~~l~ 78 (183)
+.++-|..-|.|.+..+++-+.. ++.. .|..+.+.+ ...+..++.-+-+++-......+...-.++ +++.+
T Consensus 4 VLI~GtGPvAiQLAv~lk~~~~~----~vGi-~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~ 78 (429)
T PF10100_consen 4 VLIVGTGPVAIQLAVILKKHGNC----RVGI-VGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYE 78 (429)
T ss_pred eEEEcCCHHHHHHHHHHHhccCc----eeee-ecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHH
Confidence 45778888999999988876432 3333 333333322 234434345555665544445554311122 12211
Q ss_pred EEEEcccchhhccchHHHHHHHHHhCC-----CCCeEEEEeecCChH--HHHHHHhhCCCCeEEEEcc
Q 030094 79 ILVLDEADRLLDMGFQKQISYIISRLP-----KLRRTGLFSATQTEA--VEELSKAGLRNPVRVEVRA 139 (183)
Q Consensus 79 ~lVvDEad~ll~~~~~~~l~~i~~~l~-----~~~Q~v~~SAT~~~~--v~~~~~~~~~~~~~i~~~~ 139 (183)
-|.+|.|.++=---.+....+++.++ +-+++|+.|.|+... ++.+.+..-.++..|....
T Consensus 79 -~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFSt 145 (429)
T PF10100_consen 79 -EIEGEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFST 145 (429)
T ss_pred -HhcccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeec
Confidence 14566666542223444445555554 567999999999877 6677777777888877653
No 360
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=53.50 E-value=33 Score=31.71 Aligned_cols=34 Identities=32% Similarity=0.484 Sum_probs=24.8
Q ss_pred ceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCC
Q 030094 77 LEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (183)
Q Consensus 77 l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~ 118 (183)
-+++|+|||=.+ -.+-++.+.+..+ .++||.|+.
T Consensus 324 ~DllvVDEAAaI----plplL~~l~~~~~----rv~~sTTIh 357 (758)
T COG1444 324 ADLLVVDEAAAI----PLPLLHKLLRRFP----RVLFSTTIH 357 (758)
T ss_pred CCEEEEehhhcC----ChHHHHHHHhhcC----ceEEEeeec
Confidence 579999999765 3566666666543 488888885
No 361
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=53.37 E-value=14 Score=27.34 Aligned_cols=53 Identities=25% Similarity=0.401 Sum_probs=37.7
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
+.+-+++++||--.-+|......+..++..+.....++++++.-...+..++.
T Consensus 120 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d 172 (182)
T cd03215 120 ARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCD 172 (182)
T ss_pred ccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 46678999999999998888888888888775434566666555545444443
No 362
>PRK04841 transcriptional regulator MalT; Provisional
Probab=53.25 E-value=21 Score=33.21 Aligned_cols=41 Identities=12% Similarity=0.221 Sum_probs=33.8
Q ss_pred eEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCC
Q 030094 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (183)
Q Consensus 78 ~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~ 118 (183)
-++|+|++|.+-+....+.+..+++..|.....++.|-+.+
T Consensus 123 ~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 123 LYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred EEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 47899999998655567789999999998899988887744
No 363
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=53.25 E-value=54 Score=20.95 Aligned_cols=54 Identities=11% Similarity=0.150 Sum_probs=27.1
Q ss_pred EEEEeCcHH-HHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcH
Q 030094 2 GMIISPTRE-LSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60 (183)
Q Consensus 2 alIl~Ptre-La~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~ 60 (183)
++++||+.- .+..+...+++..+.. ++....-.. +..+ .... ..++|++++|+.
T Consensus 3 ilivC~~G~~tS~~l~~~i~~~~~~~-~i~~~v~~~--~~~~-~~~~-~~~~Dliist~~ 57 (89)
T cd05566 3 ILVACGTGVATSTVVASKVKELLKEN-GIDVKVEQC--KIAE-VPSL-LDDADLIVSTTK 57 (89)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHHC-CCceEEEEe--cHHH-hhcc-cCCCcEEEEcCC
Confidence 678898854 3334445555554433 332222111 1111 1111 247999999984
No 364
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.06 E-value=30 Score=31.08 Aligned_cols=46 Identities=22% Similarity=0.249 Sum_probs=27.8
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHH
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~ 122 (183)
..-+++|+||+|.|-... .+.+...++..|...-+|+.+ |-+..+.
T Consensus 117 ~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t-te~~kll 162 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT-TEPEKVL 162 (584)
T ss_pred CCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe-CChHhhH
Confidence 567899999999986543 334445555555555555543 4444433
No 365
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=52.90 E-value=56 Score=20.57 Aligned_cols=54 Identities=13% Similarity=0.186 Sum_probs=33.6
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCc--EEEe
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGAN--LLIG 57 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~--IiV~ 57 (183)
++|++.+.+.-.+..+....+.+ . ++++..-..+.+...+.......|+. |+||
T Consensus 4 v~ii~~~~~~~~~a~~~~~~Lr~-~-g~~v~~d~~~~~~~~~~~~a~~~g~~~~iiig 59 (91)
T cd00860 4 VVVIPVTDEHLDYAKEVAKKLSD-A-GIRVEVDLRNEKLGKKIREAQLQKIPYILVVG 59 (91)
T ss_pred EEEEeeCchHHHHHHHHHHHHHH-C-CCEEEEECCCCCHHHHHHHHHHcCCCEEEEEC
Confidence 35566666655555565666633 2 78887766777777777766555654 4555
No 366
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=52.78 E-value=12 Score=28.20 Aligned_cols=52 Identities=15% Similarity=0.261 Sum_probs=37.1
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELS 125 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~ 125 (183)
..+-+++++||--.-+|......+..+++.+.+...++++++.-.+.+..++
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~ 193 (205)
T cd03226 142 LSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVC 193 (205)
T ss_pred HhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC
Confidence 3566899999999988887888888888777444456666666555544443
No 367
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=52.68 E-value=87 Score=24.58 Aligned_cols=111 Identities=12% Similarity=0.100 Sum_probs=59.7
Q ss_pred HHHHHHhhhhCCCceEEEEEcC---cchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEccc---chhh
Q 030094 16 YHVAQPFISTLPDVKSVLLVGG---VEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEA---DRLL 89 (183)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~~~g~---~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEa---d~ll 89 (183)
++-+.+..+.. ++++...-.. ....+..+.+...++|+||++...+.+.+.. -.-...+.+++++|-- +.+.
T Consensus 20 ~~G~~~~~~~~-gv~~~~~e~~~~~~~~~~~i~~~~~~g~dlIi~~g~~~~~~~~~-vA~~~p~~~F~~~d~~~~~~Nv~ 97 (258)
T cd06353 20 DEGRKAAEKAL-GVEVTYVENVPEGADAERVLRELAAQGYDLIFGTSFGFMDAALK-VAKEYPDVKFEHCSGYKTAPNVG 97 (258)
T ss_pred HHHHHHHHHhc-CCeEEEEecCCchHhHHHHHHHHHHcCCCEEEECchhhhHHHHH-HHHHCCCCEEEECCCCCCCCCee
Confidence 44455554443 6766555444 2244555566667999999999888887665 2223357788887642 2221
Q ss_pred ccch-HHHHHHH----HHhCCCCCeEEEEeecCChHHHHHHHhh
Q 030094 90 DMGF-QKQISYI----ISRLPKLRRTGLFSATQTEAVEELSKAG 128 (183)
Q Consensus 90 ~~~~-~~~l~~i----~~~l~~~~Q~v~~SAT~~~~v~~~~~~~ 128 (183)
...| ......+ ...+.+...+-+.+..-.+.+..+...|
T Consensus 98 ~~~~~~~e~~ylaG~~Aa~~t~t~kVG~I~g~~~~~~~~~~~gF 141 (258)
T cd06353 98 SYFARIYEGRYLAGVVAGKMTKTNKVGYVAAFPIPEVVRGINAF 141 (258)
T ss_pred eEechhhHHHHHHHHHHHHhhcCCcEEEEcCcccHHHHHHHHHH
Confidence 1112 1111122 2233444555555555555555555544
No 368
>COG0363 NagB 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]
Probab=52.06 E-value=56 Score=25.72 Aligned_cols=63 Identities=19% Similarity=0.214 Sum_probs=34.7
Q ss_pred eCcHHHHHHHHhc--CCcCCCCceEEEEcccchhhc--cchHHHH-HHHHHhCCCCCeEEEE-eecCCh
Q 030094 57 GTPGRLYDIMERM--DVLDFRNLEILVLDEADRLLD--MGFQKQI-SYIISRLPKLRRTGLF-SATQTE 119 (183)
Q Consensus 57 ~TP~~l~~~l~~~--~~~~l~~l~~lVvDEad~ll~--~~~~~~l-~~i~~~l~~~~Q~v~~-SAT~~~ 119 (183)
+||..+.+.+-.. +.++++++.++-+||-=-=.+ .++...+ +.+++......+.+.- .++..+
T Consensus 42 sTP~~~ye~L~~~~~~~~~w~~v~~f~~DEr~vp~~~~~Sn~~~~~~~l~~~~~~~~~~i~~~~~~~~~ 110 (238)
T COG0363 42 STPLALYEALVKLPQGQLDWSKVTIFNLDERVVPPDDPESNYGLMRRNLFDHIDIPAEFIHNGDASDPD 110 (238)
T ss_pred CCHHHHHHHHHhhhccCCCchheEEEeccccccCCCCchhHHHHHHHHHhccccCcHhhcCCCCccChh
Confidence 4677776666552 249999999999999633111 1233333 3455655443333444 333333
No 369
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=51.80 E-value=59 Score=26.63 Aligned_cols=39 Identities=8% Similarity=0.111 Sum_probs=26.1
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEee
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SA 115 (183)
..-+++|+|+||.|-.. -...+.+.++.-| ++.+++.+.
T Consensus 123 ~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 123 APRKVVVIEDAETMNEA-AANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred CCceEEEEEchhhcCHH-HHHHHHHHHhCCC-CCeEEEEEC
Confidence 56789999999998543 3445555566656 665555543
No 370
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=51.56 E-value=19 Score=29.11 Aligned_cols=53 Identities=25% Similarity=0.320 Sum_probs=41.6
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHh
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~ 127 (183)
+.+-+++++||-..=+|......+..+++.+.+. .+++++....+++.+++..
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~-~tiii~sH~l~~~~~~~d~ 201 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKD-KTIILSTHIMQEVEAICDR 201 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCC-CEEEEEcCCHHHHHHhCCE
Confidence 4667899999999999887788888888888654 6777777777777776664
No 371
>PRK08181 transposase; Validated
Probab=51.38 E-value=90 Score=25.01 Aligned_cols=72 Identities=15% Similarity=0.141 Sum_probs=40.2
Q ss_pred hcCCcEEEeCcHHHHHHHHhc---CCc-----CCCCceEEEEcccchhhccch-HHHHHHHHHhCCCCCeEEEEeecCCh
Q 030094 49 EEGANLLIGTPGRLYDIMERM---DVL-----DFRNLEILVLDEADRLLDMGF-QKQISYIISRLPKLRRTGLFSATQTE 119 (183)
Q Consensus 49 ~~~~~IiV~TP~~l~~~l~~~---~~~-----~l~~l~~lVvDEad~ll~~~~-~~~l~~i~~~l~~~~Q~v~~SAT~~~ 119 (183)
..|..++..|...|...+... ... .+.++.++|+||.+..-.... ...+-.+++..-....+++.|..-+.
T Consensus 132 ~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~ 211 (269)
T PRK08181 132 ENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFG 211 (269)
T ss_pred HcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHH
Confidence 456778777776666655321 111 156788999999988643222 23445555443333445554444333
Q ss_pred H
Q 030094 120 A 120 (183)
Q Consensus 120 ~ 120 (183)
+
T Consensus 212 ~ 212 (269)
T PRK08181 212 E 212 (269)
T ss_pred H
Confidence 3
No 372
>PHA02533 17 large terminase protein; Provisional
Probab=50.61 E-value=46 Score=29.51 Aligned_cols=102 Identities=14% Similarity=0.136 Sum_probs=53.6
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
+++++|+++-|..+++.++.+....|.+.-..+..... . .....+|..|.+.|... +...=.+..+++
T Consensus 107 v~i~A~~~~QA~~vF~~ik~~ie~~P~l~~~~i~~~~~---~-~I~l~NGS~I~~lss~~--------~t~rG~~~~~li 174 (534)
T PHA02533 107 VGILAHKASMAAEVLDRTKQAIELLPDFLQPGIVEWNK---G-SIELENGSKIGAYASSP--------DAVRGNSFAMIY 174 (534)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHhCHHHhhcceeecCc---c-EEEeCCCCEEEEEeCCC--------CccCCCCCceEE
Confidence 57899999999999998888776665432111111000 0 01113566665554321 111112456899
Q ss_pred EcccchhhccchHHHHHHHHHhCC--CCCeEEEEeecC
Q 030094 82 LDEADRLLDMGFQKQISYIISRLP--KLRRTGLFSATQ 117 (183)
Q Consensus 82 vDEad~ll~~~~~~~l~~i~~~l~--~~~Q~v~~SAT~ 117 (183)
+||++..-+ +.+....+...+. ...+++++|..-
T Consensus 175 iDE~a~~~~--~~e~~~ai~p~lasg~~~r~iiiSTp~ 210 (534)
T PHA02533 175 IDECAFIPN--FIDFWLAIQPVISSGRSSKIIITSTPN 210 (534)
T ss_pred EeccccCCC--HHHHHHHHHHHHHcCCCceEEEEECCC
Confidence 999997633 3333333333332 234566666553
No 373
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=50.59 E-value=16 Score=26.56 Aligned_cols=53 Identities=25% Similarity=0.313 Sum_probs=36.7
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
..+-+++++||--.-+|......+..+++.+.+...++++++.-.+.+..++.
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d 150 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIAD 150 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 45568999999999888888888888887775434466665544444444443
No 374
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=50.52 E-value=71 Score=29.11 Aligned_cols=77 Identities=17% Similarity=0.257 Sum_probs=46.2
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchH------------------------HHHHHHHh-cCCcEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVK------------------------ADVKKIEE-EGANLLI 56 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~------------------------~~~~~l~~-~~~~IiV 56 (183)
|+|+|.+|+-|...++.+.++.....+.....+.++...+ ...+...+ .+++|+|
T Consensus 517 amvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilI 596 (667)
T TIGR00348 517 AMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLI 596 (667)
T ss_pred eeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEE
Confidence 7899999999999988887764321012223333322111 11111111 4678998
Q ss_pred eCcHHHHHHHHhcCCcCCCCceEEEEccc
Q 030094 57 GTPGRLYDIMERMDVLDFRNLEILVLDEA 85 (183)
Q Consensus 57 ~TP~~l~~~l~~~~~~~l~~l~~lVvDEa 85 (183)
.+- ++. .++|...+..+.+|--
T Consensus 597 Vvd-----mll--TGFDaP~l~tLyldKp 618 (667)
T TIGR00348 597 VVD-----MLL--TGFDAPILNTLYLDKP 618 (667)
T ss_pred EEc-----ccc--cccCCCccceEEEecc
Confidence 873 332 5799999999997754
No 375
>PRK13342 recombination factor protein RarA; Reviewed
Probab=50.26 E-value=41 Score=28.51 Aligned_cols=38 Identities=24% Similarity=0.270 Sum_probs=22.8
Q ss_pred CceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCC
Q 030094 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (183)
Q Consensus 76 ~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~ 118 (183)
.-.++++||+|.+... ....++..+. +.+++++++|-.
T Consensus 92 ~~~vL~IDEi~~l~~~----~q~~LL~~le-~~~iilI~att~ 129 (413)
T PRK13342 92 RRTILFIDEIHRFNKA----QQDALLPHVE-DGTITLIGATTE 129 (413)
T ss_pred CceEEEEechhhhCHH----HHHHHHHHhh-cCcEEEEEeCCC
Confidence 4578999999997432 2223344442 355667777643
No 376
>PRK14873 primosome assembly protein PriA; Provisional
Probab=49.83 E-value=1.2e+02 Score=27.87 Aligned_cols=61 Identities=25% Similarity=0.309 Sum_probs=35.7
Q ss_pred HHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEcccchhhcc
Q 030094 18 VAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDM 91 (183)
Q Consensus 18 ~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEad~ll~~ 91 (183)
..+.+.+.+|+.++...-+. .-...+ ...++|+|||++. +.|-. .++.++++=+||.++..
T Consensus 443 ~eeeL~~~FP~~~V~r~d~d----~~l~~~-~~~~~IlVGTqga--epm~~------g~~~lV~ildaD~~L~~ 503 (665)
T PRK14873 443 TAEELGRAFPGVPVVTSGGD----QVVDTV-DAGPALVVATPGA--EPRVE------GGYGAALLLDAWALLGR 503 (665)
T ss_pred HHHHHHHHCCCCCEEEEChH----HHHHhh-ccCCCEEEECCCC--ccccc------CCceEEEEEcchhhhcC
Confidence 33444445677777644332 223334 3589999999853 11111 24678877789988864
No 377
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=49.58 E-value=57 Score=29.05 Aligned_cols=110 Identities=23% Similarity=0.218 Sum_probs=56.1
Q ss_pred EEEEeCcHHHHHHHH-HHHHHhhhhCCCceEEEEE---cCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 2 GMIISPTRELSSQIY-HVAQPFISTLPDVKSVLLV---GGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 2 alIl~PtreLa~Qi~-~~~~~l~~~~~~~~~~~~~---g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
.+++.||.++|.... .-+..+.+..|.++-.+-- ............ .++.-.++|.+ ....+.-..+
T Consensus 65 ~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l~~~~~~~~~~~~~~t~~~k~f-~gg~l~~~ga~--------S~~~l~s~~~ 135 (557)
T PF05876_consen 65 MLYVQPTDDAAKDFSKERLDPMIRASPVLRRKLSPSKSRDSGNTILYKRF-PGGFLYLVGAN--------SPSNLRSRPA 135 (557)
T ss_pred EEEEEEcHHHHHHHHHHHHHHHHHhCHHHHHHhCchhhcccCCchhheec-CCCEEEEEeCC--------CCcccccCCc
Confidence 578999999999776 5566666665554422211 001111111111 22233333332 1134555778
Q ss_pred eEEEEcccchhhcc-c-hHHHHHHHHHhCC--CCCeEEEEeecCChH
Q 030094 78 EILVLDEADRLLDM-G-FQKQISYIISRLP--KLRRTGLFSATQTEA 120 (183)
Q Consensus 78 ~~lVvDEad~ll~~-~-~~~~l~~i~~~l~--~~~Q~v~~SAT~~~~ 120 (183)
+++++||.|..-.. + =.+-+....++.. .....+++.+|.+.+
T Consensus 136 r~~~~DEvD~~p~~~~~eGdp~~la~~R~~tf~~~~K~~~~STPt~~ 182 (557)
T PF05876_consen 136 RYLLLDEVDRYPDDVGGEGDPVELAEKRTKTFGSNRKILRISTPTIE 182 (557)
T ss_pred CEEEEechhhccccCccCCCHHHHHHHHHhhhccCcEEEEeCCCCCC
Confidence 99999999998431 1 1222332223221 234566667777654
No 378
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=49.52 E-value=15 Score=30.50 Aligned_cols=54 Identities=24% Similarity=0.230 Sum_probs=43.4
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHh
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~ 127 (183)
..+-+++++||--.=+|......+..++..+.....++++|....+++..++..
T Consensus 188 ~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~ 241 (340)
T PRK13536 188 INDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDR 241 (340)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE
Confidence 456789999999999988888888888888755556888888888777777664
No 379
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.22 E-value=22 Score=29.68 Aligned_cols=39 Identities=15% Similarity=0.254 Sum_probs=24.0
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEe
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~S 114 (183)
..-+++|+||+|.|-...+ ..+...++.-|.....++.+
T Consensus 118 ~~~kviIIDEa~~l~~~a~-naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSF-NALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEEEc
Confidence 4568999999999854333 23444455545555555543
No 380
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=49.17 E-value=30 Score=31.79 Aligned_cols=39 Identities=13% Similarity=0.169 Sum_probs=25.4
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEe
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~S 114 (183)
..-+++||||+|.|-... ...+.+.++.-+....+|+.+
T Consensus 118 gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 556899999999875432 334555566555666666654
No 381
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=49.12 E-value=35 Score=28.97 Aligned_cols=72 Identities=17% Similarity=0.175 Sum_probs=37.9
Q ss_pred CCcEEEeCcHH-------HHHHHHhcC-CcCCCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHH
Q 030094 51 GANLLIGTPGR-------LYDIMERMD-VLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122 (183)
Q Consensus 51 ~~~IiV~TP~~-------l~~~l~~~~-~~~l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~ 122 (183)
-||+.+-+|.. +.++++... .-...+-+++++||+|.|-.. ....+...++.-++..-+++ .+|-+..+.
T Consensus 84 hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~-aanaLLk~LEep~~~~~fIL-~a~~~~~ll 161 (394)
T PRK07940 84 HPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER-AANALLKAVEEPPPRTVWLL-CAPSPEDVL 161 (394)
T ss_pred CCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH-HHHHHHHHhhcCCCCCeEEE-EECChHHCh
Confidence 36777666642 333333200 111356789999999999543 23444455555444444444 444344444
Q ss_pred HH
Q 030094 123 EL 124 (183)
Q Consensus 123 ~~ 124 (183)
..
T Consensus 162 pT 163 (394)
T PRK07940 162 PT 163 (394)
T ss_pred HH
Confidence 33
No 382
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=48.97 E-value=89 Score=29.35 Aligned_cols=75 Identities=15% Similarity=0.264 Sum_probs=43.3
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCc--chHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGV--EVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEI 79 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~--~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~ 79 (183)
+||++|+.+...++++.+....... +.. .+..+. +...-.+.....+..|++|| +.+.+-++ +.=..+..
T Consensus 677 ~LVlftS~~~l~~v~~~L~~~~~~~-~~~--~l~q~~~~~r~~ll~~F~~~~~~iLlgt-~sf~EGVD----~~g~~l~~ 748 (850)
T TIGR01407 677 ILVLFTSYEMLHMVYDMLNELPEFE-GYE--VLAQGINGSRAKIKKRFNNGEKAILLGT-SSFWEGVD----FPGNGLVC 748 (850)
T ss_pred EEEEeCCHHHHHHHHHHHhhhcccc-Cce--EEecCCCccHHHHHHHHHhCCCeEEEEc-ceeecccc----cCCCceEE
Confidence 7899999999999999887632221 333 223332 33333444444556799999 33333222 22355677
Q ss_pred EEEcc
Q 030094 80 LVLDE 84 (183)
Q Consensus 80 lVvDE 84 (183)
+|++-
T Consensus 749 viI~~ 753 (850)
T TIGR01407 749 LVIPR 753 (850)
T ss_pred EEEeC
Confidence 77743
No 383
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.79 E-value=25 Score=30.73 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=13.3
Q ss_pred CCceEEEEcccchhhcc
Q 030094 75 RNLEILVLDEADRLLDM 91 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~ 91 (183)
..-+++|+||||.|-..
T Consensus 120 g~~KV~IIDEah~Ls~~ 136 (484)
T PRK14956 120 GKYKVYIIDEVHMLTDQ 136 (484)
T ss_pred CCCEEEEEechhhcCHH
Confidence 35679999999998543
No 384
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=48.74 E-value=17 Score=27.56 Aligned_cols=53 Identities=28% Similarity=0.368 Sum_probs=37.7
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
..+-+++++||--.-+|......+..++..+.+...++++++.-...+..++.
T Consensus 152 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d 204 (218)
T cd03266 152 VHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCD 204 (218)
T ss_pred hcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcC
Confidence 45668999999999998888888888888775444566666655555444443
No 385
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.58 E-value=22 Score=31.38 Aligned_cols=39 Identities=15% Similarity=0.263 Sum_probs=25.1
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEe
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~S 114 (183)
.+-+++|+||+|.|-...+ ..+...++..|....+++.+
T Consensus 118 ~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 4568999999999865433 33444555555566666554
No 386
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=48.57 E-value=18 Score=27.37 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=36.6
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELS 125 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~ 125 (183)
..+-+++++||--.-+|......+..++..+.+...+++++..-.+.+..++
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~ 205 (216)
T TIGR00960 154 VHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYR 205 (216)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC
Confidence 4566899999999999887788888888777544456666655544444443
No 387
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=48.55 E-value=22 Score=26.71 Aligned_cols=52 Identities=10% Similarity=0.141 Sum_probs=27.0
Q ss_pred ceEEEEcccchhhccchH-----HHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhh
Q 030094 77 LEILVLDEADRLLDMGFQ-----KQISYIISRLPKLRRTGLFSATQTEAVEELSKAG 128 (183)
Q Consensus 77 l~~lVvDEad~ll~~~~~-----~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~ 128 (183)
=.++|+|||+..+..... +.....+....+...-+++..--+..+...++..
T Consensus 80 ~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~~id~~ir~l 136 (193)
T PF05707_consen 80 GSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPSQIDKFIRDL 136 (193)
T ss_dssp T-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GGGB-HHHHCC
T ss_pred CcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHHHHhHHHHHH
Confidence 369999999999864322 1222444444555555555555555566666543
No 388
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=48.46 E-value=23 Score=29.45 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=16.3
Q ss_pred eEEEEcccchhhccchHHHHHHHHHh
Q 030094 78 EILVLDEADRLLDMGFQKQISYIISR 103 (183)
Q Consensus 78 ~~lVvDEad~ll~~~~~~~l~~i~~~ 103 (183)
-++|+||+|.+.+..-.+.+..+++.
T Consensus 140 ~viviDE~d~l~~~~~~~~l~~l~~~ 165 (394)
T PRK00411 140 LIVALDDINYLFEKEGNDVLYSLLRA 165 (394)
T ss_pred EEEEECCHhHhhccCCchHHHHHHHh
Confidence 47899999999732223445555443
No 389
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=48.44 E-value=19 Score=27.35 Aligned_cols=53 Identities=17% Similarity=0.133 Sum_probs=36.6
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
+.+-+++++||.-.-+|......+..+++.+.+...++++++.-...+.+++.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~ 205 (214)
T PRK13543 153 LSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRT 205 (214)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcc
Confidence 45667999999988888777778877777664444566666655555555443
No 390
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.39 E-value=27 Score=31.05 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=25.9
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEe
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~S 114 (183)
..-+++|+||+|.|-.. -...+...++.-|....+++.+
T Consensus 118 g~~kViIIDEa~~ls~~-a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQ-SFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccHH-HHHHHHHHHhcCCCCceEEEEE
Confidence 45689999999998543 3445556666655556666544
No 391
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=48.29 E-value=39 Score=27.60 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=19.9
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhC
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRL 104 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l 104 (183)
...++++++||||+|.-.+ .+.++.+....
T Consensus 163 ~~~~~~iivDEA~~L~~~a-le~lr~i~d~~ 192 (297)
T COG2842 163 RDTVRLIIVDEADRLPYRA-LEELRRIHDKT 192 (297)
T ss_pred ccCcceeeeehhhccChHH-HHHHHHHHHhh
Confidence 5778999999999984222 34455554443
No 392
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=48.19 E-value=20 Score=26.27 Aligned_cols=49 Identities=29% Similarity=0.341 Sum_probs=34.8
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~ 122 (183)
..+-+++++||--.-+|......+..+++.+.++..+++++..-...+.
T Consensus 111 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 111 LHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 4566899999999999988888888888887544345555444433333
No 393
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=48.08 E-value=21 Score=26.68 Aligned_cols=53 Identities=30% Similarity=0.300 Sum_probs=36.6
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCCh-HHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE-AVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~-~v~~~~~ 126 (183)
..+-+++++||-..-+|......+..+++.+.+...++++++.-.+ .+..++.
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d 180 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFD 180 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcC
Confidence 4566899999999999888888888888877543445555554442 4444443
No 394
>PRK14974 cell division protein FtsY; Provisional
Probab=48.00 E-value=47 Score=27.57 Aligned_cols=54 Identities=13% Similarity=0.114 Sum_probs=41.1
Q ss_pred CceEEEEcccchhh-ccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhC
Q 030094 76 NLEILVLDEADRLL-DMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGL 129 (183)
Q Consensus 76 ~l~~lVvDEad~ll-~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~ 129 (183)
...++++|.|.++- +......+..+.+...+..-.+.++|+...+....++.|.
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHH
Confidence 45799999998875 3456778888888777777788889988877666666654
No 395
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=47.88 E-value=46 Score=30.72 Aligned_cols=46 Identities=24% Similarity=0.273 Sum_probs=26.6
Q ss_pred CceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 76 ~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
+-.++++||+|.+-.. ..+ .++..+ .+.++++.++|-.+....+..
T Consensus 109 ~~~IL~IDEIh~Ln~~-qQd---aLL~~l-E~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 109 KRTILFIDEVHRFNKA-QQD---ALLPWV-ENGTITLIGATTENPYFEVNK 154 (725)
T ss_pred CceEEEEeChhhCCHH-HHH---HHHHHh-cCceEEEEEecCCChHhhhhh
Confidence 4568999999997432 222 233333 346777888775544333333
No 396
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=47.85 E-value=29 Score=26.27 Aligned_cols=41 Identities=24% Similarity=0.174 Sum_probs=31.4
Q ss_pred CCceEEEEcccchhhccchHH-HHHHHHHhCCC--CCeEEEEee
Q 030094 75 RNLEILVLDEADRLLDMGFQK-QISYIISRLPK--LRRTGLFSA 115 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~-~l~~i~~~l~~--~~Q~v~~SA 115 (183)
.+-+++++||...-++..... .+..++..+.+ ..++++.|-
T Consensus 138 ~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH 181 (204)
T cd03240 138 SNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITH 181 (204)
T ss_pred cCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEe
Confidence 566899999999999877777 88888877755 456666554
No 397
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=47.65 E-value=21 Score=27.25 Aligned_cols=52 Identities=23% Similarity=0.244 Sum_probs=37.1
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
..+-+++++||--.-+|......+..+++.+.++ .+++++..-.+.+..++.
T Consensus 157 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d 208 (227)
T cd03260 157 ANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVAD 208 (227)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCC
Confidence 3556899999999989888888888888887655 566665554444444443
No 398
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=47.48 E-value=18 Score=27.69 Aligned_cols=53 Identities=21% Similarity=0.123 Sum_probs=38.8
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
..+-+++++||--.-+|......+..+++.+.+...+++++..-.+.+..++.
T Consensus 149 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d 201 (232)
T cd03218 149 ATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITD 201 (232)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 45668999999999998888888888887775444566666665555555554
No 399
>CHL00181 cbbX CbbX; Provisional
Probab=47.48 E-value=48 Score=26.74 Aligned_cols=48 Identities=15% Similarity=0.231 Sum_probs=27.0
Q ss_pred eEEEEcccchhhcc----chH-HHHHHHHHhCCC-CCeEEEEeecCChHHHHHH
Q 030094 78 EILVLDEADRLLDM----GFQ-KQISYIISRLPK-LRRTGLFSATQTEAVEELS 125 (183)
Q Consensus 78 ~~lVvDEad~ll~~----~~~-~~l~~i~~~l~~-~~Q~v~~SAT~~~~v~~~~ 125 (183)
.++++||+|.+... ++. ..+..++..+.. ...++++.|+.++.+..+.
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~ 177 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFY 177 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHH
Confidence 58999999998532 133 333444444422 1234555677776665444
No 400
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=47.29 E-value=18 Score=27.27 Aligned_cols=53 Identities=15% Similarity=0.200 Sum_probs=36.1
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
..+-+++++||--.-+|......+..+++.+.+...+++++..-...+..++.
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d 203 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVAD 203 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 45668999999999888877888888887775433456665555544444443
No 401
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=47.19 E-value=19 Score=27.78 Aligned_cols=53 Identities=13% Similarity=0.220 Sum_probs=37.9
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
..+-+++++||-..-+|......+..+++.+.+...++++++.-.+.+..++.
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d 204 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVAS 204 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 45668999999999999888888888887775434566666665555555444
No 402
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=47.09 E-value=14 Score=28.41 Aligned_cols=53 Identities=26% Similarity=0.344 Sum_probs=38.4
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCC-CeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKL-RRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~-~Q~v~~SAT~~~~v~~~~~ 126 (183)
+.+-+++++||...=+|......+..+++.+.+. ..++++++.-...+..++.
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d 199 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSD 199 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcC
Confidence 4566899999999999988888888888877542 4566666655555555544
No 403
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=46.93 E-value=21 Score=26.97 Aligned_cols=49 Identities=18% Similarity=0.179 Sum_probs=35.2
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCC-C--CCeEEEEeecCChHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLP-K--LRRTGLFSATQTEAVE 122 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~-~--~~Q~v~~SAT~~~~v~ 122 (183)
..+-+++++||...-++......+..++..+. . ..+++++++.-...+.
T Consensus 129 ~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~ 180 (198)
T cd03276 129 VMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLA 180 (198)
T ss_pred ccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccc
Confidence 36778999999999998777777777665542 2 4678888775555443
No 404
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=46.91 E-value=18 Score=29.34 Aligned_cols=54 Identities=24% Similarity=0.228 Sum_probs=43.6
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHh
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~ 127 (183)
..+-+++++||--.=+|......+..+++.+.....++++|....+++..++..
T Consensus 154 ~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~ 207 (306)
T PRK13537 154 VNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDR 207 (306)
T ss_pred hCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE
Confidence 456689999999999988888888888888755556888888888887777764
No 405
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=46.86 E-value=28 Score=31.62 Aligned_cols=45 Identities=16% Similarity=0.257 Sum_probs=25.7
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHH
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v 121 (183)
..-+++|+||+|.|-...+. .+.+.++.-|....+++. +|-+..+
T Consensus 118 g~~KV~IIDEah~Ls~~a~N-ALLKtLEEPp~~v~FIL~-Tt~~~kL 162 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFN-ALLKTLEEPPEHVKFLLA-TTDPQKL 162 (647)
T ss_pred CCCEEEEEechHhCCHHHHH-HHHHHHHcCCCCeEEEEe-cCCcccc
Confidence 45689999999998654433 333445544444444443 4444433
No 406
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=46.79 E-value=77 Score=30.27 Aligned_cols=72 Identities=21% Similarity=0.262 Sum_probs=50.9
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHH---HHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
++|+|-..+-|.-+.+.+.+- ++.+..+.||.+.... .+.+++..+.++|+|-. +. .+++.+++.
T Consensus 616 tiiFv~~qe~~d~l~~~L~~a-----g~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsv-----va--rGLdv~~l~ 683 (997)
T KOG0334|consen 616 TIIFVDKQEKADALLRDLQKA-----GYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSV-----VA--RGLDVKELI 683 (997)
T ss_pred EEEEEcCchHHHHHHHHHHhc-----CcchhhhcCCCchHHHHhHHHHHhccCceEEEehhh-----hh--cccccccce
Confidence 578888888888776665542 5566668888775333 44566678999999963 33 578999998
Q ss_pred EEEEccc
Q 030094 79 ILVLDEA 85 (183)
Q Consensus 79 ~lVvDEa 85 (183)
++|-+.+
T Consensus 684 Lvvnyd~ 690 (997)
T KOG0334|consen 684 LVVNYDF 690 (997)
T ss_pred EEEEccc
Confidence 8875554
No 407
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=46.67 E-value=24 Score=26.88 Aligned_cols=53 Identities=19% Similarity=0.169 Sum_probs=36.1
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
+.+-+++++||--.-+|......+..+++.+.....++++++.-...+..++.
T Consensus 165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d 217 (224)
T TIGR02324 165 IADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVAD 217 (224)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcc
Confidence 45668999999999888877888888887774433456665544444444443
No 408
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=46.55 E-value=18 Score=27.70 Aligned_cols=53 Identities=19% Similarity=0.157 Sum_probs=38.7
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
..+-+++++||--.-+|......+..++..+.++..+++++..-.+.+..++.
T Consensus 129 ~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d 181 (223)
T TIGR03771 129 ATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCD 181 (223)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 45668999999999998888888888888775445566766655555555544
No 409
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.39 E-value=37 Score=30.73 Aligned_cols=44 Identities=16% Similarity=0.313 Sum_probs=25.3
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChH
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~ 120 (183)
.+.+++|+||+|.|....+. .+...++.-|....+++. +|-+..
T Consensus 123 g~~KV~IIDEvh~Ls~~a~N-aLLKtLEEPP~~~~fIL~-Ttd~~k 166 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFN-AMLKTLEEPPEYLKFVLA-TTDPQK 166 (618)
T ss_pred CCceEEEEEChhhCCHHHHH-HHHHhcccCCCCeEEEEE-ECCchh
Confidence 45789999999998654433 333344444444455443 444433
No 410
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=46.28 E-value=18 Score=27.43 Aligned_cols=52 Identities=23% Similarity=0.274 Sum_probs=36.1
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCC-CeEEEEeecCChHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKL-RRTGLFSATQTEAVEELS 125 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~-~Q~v~~SAT~~~~v~~~~ 125 (183)
..+-+++++||...-+|......+..++..+.+. ..++++++.-.+.+..++
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~ 196 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIA 196 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhc
Confidence 4566899999999999988888888888877532 345555555544444433
No 411
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=46.26 E-value=20 Score=27.84 Aligned_cols=52 Identities=17% Similarity=0.216 Sum_probs=38.1
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
..+-+++++||.-.-+|......+..+++.+.+. .++++++.-...+..++.
T Consensus 161 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~tii~~sh~~~~~~~~~d 212 (249)
T PRK14253 161 AMEPDVILMDEPTSALDPIATHKIEELMEELKKN-YTIVIVTHSMQQARRISD 212 (249)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcC-CeEEEEecCHHHHHHhCC
Confidence 3556899999999999888888888888887654 466666665555555444
No 412
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=45.96 E-value=20 Score=27.10 Aligned_cols=53 Identities=23% Similarity=0.177 Sum_probs=37.2
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
..+-+++++||--.-+|......+..++..+.+...++++++.-.+.+..++.
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d 200 (213)
T cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFD 200 (213)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC
Confidence 35568999999999888877888888877765444566666655555555444
No 413
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=45.89 E-value=27 Score=33.28 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=32.6
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeec
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT 116 (183)
..-.++++||.+.-++......+..++..+.+..|+++.|--
T Consensus 1110 ~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~ 1151 (1179)
T TIGR02168 1110 KPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHN 1151 (1179)
T ss_pred CCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcC
Confidence 445799999999999887788888888888667776665443
No 414
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=45.78 E-value=33 Score=26.72 Aligned_cols=40 Identities=23% Similarity=0.136 Sum_probs=30.8
Q ss_pred CceEEEEcccchhhccchHHHHHHHHHhCCC-CCeEEEEee
Q 030094 76 NLEILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLFSA 115 (183)
Q Consensus 76 ~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~-~~Q~v~~SA 115 (183)
.-+++++||...-++......+..++..+.+ ..++++.|-
T Consensus 177 ~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH 217 (247)
T cd03275 177 PAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISL 217 (247)
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEEC
Confidence 3579999999999998888888888887755 456666554
No 415
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=45.78 E-value=20 Score=27.55 Aligned_cols=53 Identities=21% Similarity=0.238 Sum_probs=37.8
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
..+-+++++||--.-+|......+..+++.+.+...++++++.-...+..++.
T Consensus 159 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d 211 (236)
T cd03219 159 ATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLAD 211 (236)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC
Confidence 35568999999999998888888888887775444566666665555555444
No 416
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=45.53 E-value=23 Score=26.95 Aligned_cols=53 Identities=23% Similarity=0.298 Sum_probs=39.0
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
..+-+++++||--.-+|......+..++..+.....++++++.-...+..++.
T Consensus 140 ~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d 192 (223)
T TIGR03740 140 LNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLAD 192 (223)
T ss_pred hcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcC
Confidence 45568999999999998888888888888775444566666666555555554
No 417
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=45.50 E-value=56 Score=21.25 Aligned_cols=39 Identities=21% Similarity=0.136 Sum_probs=22.9
Q ss_pred HHHHHHhcCCcCCCCceEEEEcccchhhccchHHHHHHHH
Q 030094 62 LYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYII 101 (183)
Q Consensus 62 l~~~l~~~~~~~l~~l~~lVvDEad~ll~~~~~~~l~~i~ 101 (183)
+...+..... ....++++++|||-.=++......+..++
T Consensus 50 l~~~~~~~~~-~~~~~~~l~lDEaF~~lD~~~~~~~~~~l 88 (90)
T PF13558_consen 50 LAALYSSSSG-RGDSPRLLFLDEAFSKLDEENIERLMDLL 88 (90)
T ss_dssp HHHHHHTTST-S-TTBSEEEEESTTTTCGHHHHHHHHHHH
T ss_pred HHHHHhhhcC-CCCCcCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 4444444222 46789999999996555554455544444
No 418
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=45.48 E-value=66 Score=19.27 Aligned_cols=51 Identities=20% Similarity=0.399 Sum_probs=34.7
Q ss_pred CceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEccc
Q 030094 28 DVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEA 85 (183)
Q Consensus 28 ~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEa 85 (183)
+..+..+.|+.+.+++.. ........|+|+|. .+. .++++..++.+|+-+.
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-----~~~--~Gi~~~~~~~vi~~~~ 64 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATD-----VAE--RGLDLPGVDLVIIYDL 64 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh--CCcChhcCCEEEEeCC
Confidence 677888888766554433 23335678999985 333 5788888888887665
No 419
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=45.43 E-value=24 Score=27.60 Aligned_cols=54 Identities=15% Similarity=0.239 Sum_probs=40.6
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHh
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~ 127 (183)
..+-+++++||--.-+|......+..++..+.....+++++..-...+.+++..
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~ 207 (255)
T PRK11231 154 AQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDH 207 (255)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCE
Confidence 455689999999999988888888888877654445777777766666666664
No 420
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.18 E-value=32 Score=31.51 Aligned_cols=38 Identities=11% Similarity=0.143 Sum_probs=24.6
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEE
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLF 113 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~ 113 (183)
.+-+++|+||+|.|-... ...+..+++.-+....+++.
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FILa 154 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFLFA 154 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEEEE
Confidence 456899999999885443 44555566665555555553
No 421
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=45.17 E-value=21 Score=27.59 Aligned_cols=53 Identities=23% Similarity=0.300 Sum_probs=38.1
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
..+-+++++||-..-+|......+..+++.+.+...++++++.-...+..++.
T Consensus 157 ~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d 209 (242)
T PRK11124 157 MMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTAS 209 (242)
T ss_pred hcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcC
Confidence 45668999999999998877888888888775444566666655555555554
No 422
>PF14792 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1RZT_A 3PML_A 2PFN_A 3HX0_K 3HWT_A 2GWS_E 2BCQ_A 3UPQ_A 2BCS_A 3UQ2_A ....
Probab=45.08 E-value=19 Score=24.69 Aligned_cols=48 Identities=15% Similarity=0.247 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcH
Q 030094 9 RELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60 (183)
Q Consensus 9 reLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~ 60 (183)
|+=+.++.+.+.+......+--...++|+.....+. .+-.||+|+.|.
T Consensus 4 R~Ev~~i~~~V~~~~~~i~p~~~v~i~GSyRRGK~~----~gDiDiLIt~~~ 51 (112)
T PF14792_consen 4 RDEVEEIEEIVKEALEKIDPGLEVEICGSYRRGKET----SGDIDILITHPD 51 (112)
T ss_dssp HHHHHHHHHHHHHHHHCCSTT-EEEEEHHHHTT-SE----ESSEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEccccccCCCc----CCCeEEEEeCCC
Confidence 455777777777766655344446667755543331 456899999984
No 423
>TIGR03871 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein. This protein family, a sister family to TIGR03870, is found more broadly. It occurs a range of PQQ-biosynthesizing species, not just in known methanotrophs. Interpretation of evidence by homology and by direct experimental work suggest two different roles. By homology, this family appears to be the periplasmic substrate-binding protein of an ABC transport family. However, mutational studies and direct characterization for some sequences related to this family suggests this family may act as a maturation chaperone or additional subunit of a methanol dehydrogenase-like enzyme.
Probab=44.95 E-value=53 Score=24.73 Aligned_cols=43 Identities=9% Similarity=0.000 Sum_probs=24.5
Q ss_pred HhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHH
Q 030094 21 PFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYD 64 (183)
Q Consensus 21 ~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~ 64 (183)
.+++.. ++++...............+..+.+|++++||.+-..
T Consensus 28 ~i~~~~-g~~i~~~~~~~~~~~~~~~l~~g~~Di~~~~~~r~~~ 70 (232)
T TIGR03871 28 LLADDL-GLPLEYTWFPQRRGFVRNTLNAGRCDVVIGVPAGYEM 70 (232)
T ss_pred HHHHHc-CCceEEEecCcchhhHHHHHhcCCccEEEeccCcccc
Confidence 333343 5665544433333323345667789999999876433
No 424
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.69 E-value=36 Score=27.06 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=31.5
Q ss_pred CceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeec
Q 030094 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (183)
Q Consensus 76 ~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT 116 (183)
.-+++++||...-++......+..++..+.+.+++++.|-.
T Consensus 192 ~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~ 232 (276)
T cd03241 192 AVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHL 232 (276)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEech
Confidence 67899999999988887778887777777666666665553
No 425
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=44.43 E-value=31 Score=31.95 Aligned_cols=44 Identities=20% Similarity=0.315 Sum_probs=27.1
Q ss_pred eEEEEcccchhhccch----HHHHHHHHHhCCCCCeEEEEeecCChHH
Q 030094 78 EILVLDEADRLLDMGF----QKQISYIISRLPKLRRTGLFSATQTEAV 121 (183)
Q Consensus 78 ~~lVvDEad~ll~~~~----~~~l~~i~~~l~~~~Q~v~~SAT~~~~v 121 (183)
.++++||+|.++..+. ..++.++++.+-...++.+.+||=.++.
T Consensus 280 ~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_pred CEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHH
Confidence 4899999999985432 3345455554433445556666665553
No 426
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=44.33 E-value=19 Score=30.00 Aligned_cols=30 Identities=17% Similarity=0.373 Sum_probs=19.3
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhC
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRL 104 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l 104 (183)
++.++++|+||+-.+-. .....+...++.+
T Consensus 100 l~~~~~lIiDEism~~~-~~l~~i~~~lr~i 129 (364)
T PF05970_consen 100 LRKADVLIIDEISMVSA-DMLDAIDRRLRDI 129 (364)
T ss_pred hhhheeeecccccchhH-HHHHHHHHhhhhh
Confidence 56678999999977643 3444554444433
No 427
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=43.90 E-value=85 Score=20.06 Aligned_cols=55 Identities=16% Similarity=0.204 Sum_probs=32.1
Q ss_pred CEEEEeCcH---HHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCC--cEEEe
Q 030094 1 MGMIISPTR---ELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGA--NLLIG 57 (183)
Q Consensus 1 ~alIl~Ptr---eLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--~IiV~ 57 (183)
|+.|++... ++.....+....|.. . ++++..-.++.+...+.+.....|+ -|+||
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~-~-gi~v~~d~~~~~~~k~~~~a~~~g~p~~iiiG 60 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRK-A-GIRVELDDSDKSLGKQIKYADKLGIPFIIIIG 60 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHH-T-TSEEEEESSSSTHHHHHHHHHHTTESEEEEEE
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHH-C-CCEEEEECCCCchhHHHHHHhhcCCeEEEEEC
Confidence 355555555 444444444444432 2 6888887788888888776654443 34455
No 428
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=43.80 E-value=19 Score=27.14 Aligned_cols=53 Identities=21% Similarity=0.298 Sum_probs=37.3
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCC-CeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKL-RRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~-~Q~v~~SAT~~~~v~~~~~ 126 (183)
..+-+++++||--.-+|......+..+++.+.+. ..++++++.-.+.+..++.
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d 199 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALAD 199 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcC
Confidence 4566899999999999887788888888776432 3466666655555444443
No 429
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=43.59 E-value=26 Score=26.33 Aligned_cols=47 Identities=11% Similarity=0.142 Sum_probs=32.7
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~ 120 (183)
..+-+++++||...=+|......+..+++.+.+...++++++.-...
T Consensus 145 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 191 (204)
T PRK13538 145 LTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLP 191 (204)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhh
Confidence 46678999999998888877888888777664333455555544333
No 430
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=43.54 E-value=26 Score=26.59 Aligned_cols=53 Identities=21% Similarity=0.180 Sum_probs=37.3
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
+.+-+++++||--.-+|......+..+++.+.....+++++..-...+..++.
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d 200 (222)
T cd03224 148 MSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIAD 200 (222)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcc
Confidence 45668999999999898888888888887775434566666655444455443
No 431
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=43.49 E-value=20 Score=27.65 Aligned_cols=53 Identities=21% Similarity=0.125 Sum_probs=38.6
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCC-CeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKL-RRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~-~Q~v~~SAT~~~~v~~~~~ 126 (183)
..+-+++++||--.-+|......+..++..+.++ ..++++++.-...+..++.
T Consensus 130 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d 183 (230)
T TIGR01184 130 SIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSD 183 (230)
T ss_pred HcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC
Confidence 4566899999999999988888888888776432 4567777666555555554
No 432
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=43.45 E-value=1.1e+02 Score=25.24 Aligned_cols=40 Identities=13% Similarity=0.168 Sum_probs=27.4
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEe
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~S 114 (183)
...-+++++|++|.|- ......+...++..+....+++.|
T Consensus 111 ~~~~kV~iiEp~~~Ld-~~a~naLLk~LEep~~~~~~Ilvt 150 (325)
T PRK08699 111 RGGLRVILIHPAESMN-LQAANSLLKVLEEPPPQVVFLLVS 150 (325)
T ss_pred cCCceEEEEechhhCC-HHHHHHHHHHHHhCcCCCEEEEEe
Confidence 3667899999999984 345666666777766555555543
No 433
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=43.29 E-value=26 Score=32.07 Aligned_cols=102 Identities=12% Similarity=0.148 Sum_probs=55.3
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhC-CCceEEEEEcCcchHHHHHHHHhcC--CcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTL-PDVKSVLLVGGVEVKADVKKIEEEG--ANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~-~~~~~~~~~g~~~~~~~~~~l~~~~--~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
.++.+|.+.-+..+++.+....... ++-.+....| ... .....+| .-|..+|- .+++...=....
T Consensus 287 IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I----~i~f~nG~kstI~FaSa-------rntNsiRGqtfD 354 (738)
T PHA03368 287 IGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI----SFSFPDGSRSTIVFASS-------HNTNGIRGQDFN 354 (738)
T ss_pred EEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE----EEEecCCCccEEEEEec-------cCCCCccCCccc
Confidence 4678888888888888888875532 2222222222 111 0001112 24555532 111222223567
Q ss_pred EEEEcccchhhccchHHHHHHHHHhC-CCCCeEEEEeecCCh
Q 030094 79 ILVLDEADRLLDMGFQKQISYIISRL-PKLRRTGLFSATQTE 119 (183)
Q Consensus 79 ~lVvDEad~ll~~~~~~~l~~i~~~l-~~~~Q~v~~SAT~~~ 119 (183)
++|+|||.-+-+ +.+..++-.+ -.+++.|+.|+|-+.
T Consensus 355 LLIVDEAqFIk~----~al~~ilp~l~~~n~k~I~ISS~Ns~ 392 (738)
T PHA03368 355 LLFVDEANFIRP----DAVQTIMGFLNQTNCKIIFVSSTNTG 392 (738)
T ss_pred EEEEechhhCCH----HHHHHHHHHHhccCccEEEEecCCCC
Confidence 999999988743 2333333322 248999999999554
No 434
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=43.19 E-value=67 Score=28.55 Aligned_cols=96 Identities=11% Similarity=0.081 Sum_probs=55.2
Q ss_pred EEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCc---EEEeCcHHHHHHHHh-cCCcCCCCce
Q 030094 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGAN---LLIGTPGRLYDIMER-MDVLDFRNLE 78 (183)
Q Consensus 3 lIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~---IiV~TP~~l~~~l~~-~~~~~l~~l~ 78 (183)
.|++|+.+=|.+.+..++.+....++++. +.+.+.+ |..+--......+.. .+..|=.+-.
T Consensus 122 ~i~A~s~~qa~~~F~~ar~mv~~~~~l~~---------------~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~ 186 (546)
T COG4626 122 YILAPSVEQAANSFNPARDMVKRDDDLRD---------------LCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSV 186 (546)
T ss_pred EEEeccHHHHHHhhHHHHHHHHhCcchhh---------------hhccccceeEEEecccceeeeeeccCCCcccCCCcc
Confidence 58999999999999988888776542221 1112222 222222222222222 2334545567
Q ss_pred EEEEcccchhhccchHHHHHHHHHhCC--CCCeEEEEee
Q 030094 79 ILVLDEADRLLDMGFQKQISYIISRLP--KLRRTGLFSA 115 (183)
Q Consensus 79 ~lVvDEad~ll~~~~~~~l~~i~~~l~--~~~Q~v~~SA 115 (183)
+.|+||.|..-+.+ ..+..+..-+. ++.|++..|.
T Consensus 187 ~~I~DEih~f~~~~--~~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 187 GAIIDELHLFGKQE--DMYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred eEEEehhhhhcCHH--HHHHHHHhhhccCcCceEEEEec
Confidence 89999999975432 55555555553 4566776654
No 435
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=43.15 E-value=25 Score=27.25 Aligned_cols=53 Identities=25% Similarity=0.232 Sum_probs=39.4
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHh
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~ 127 (183)
..+-+++++||--.-+|......+..++..+.+. .+++++..-...+..++..
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tiiivsH~~~~~~~~~d~ 212 (247)
T TIGR00972 160 AVEPEVLLLDEPTSALDPIATGKIEELIQELKKK-YTIVIVTHNMQQAARISDR 212 (247)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CeEEEEecCHHHHHHhCCE
Confidence 4566899999999999888888888888877554 5677766666555555553
No 436
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=42.88 E-value=75 Score=20.73 Aligned_cols=35 Identities=17% Similarity=0.423 Sum_probs=20.0
Q ss_pred cCCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEcccc
Q 030094 50 EGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEAD 86 (183)
Q Consensus 50 ~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEad 86 (183)
-.|||+..-|+-. +++.. .-+..++++..++||.-
T Consensus 26 ~ePDivL~G~ef~-e~~~~-~~l~~~~lkvy~i~ELg 60 (85)
T PF08967_consen 26 FEPDIVLVGPEFY-EFLSE-EVLEVSGLKVYVIEELG 60 (85)
T ss_dssp ----EEEE-HHHH-HHHHH----EETTEEEEE-GGGT
T ss_pred CCCCEEEEcHHHH-HHHHH-HHHHhhCceEEEHHhcC
Confidence 4699999999754 44444 56778999999999963
No 437
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=42.85 E-value=33 Score=26.84 Aligned_cols=52 Identities=17% Similarity=0.124 Sum_probs=39.1
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
+.+-+++++||.-.-+|......+..++..+.+. .++++++.-.+.+..++.
T Consensus 166 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~tiii~tH~~~~i~~~~d 217 (259)
T PRK14260 166 AIKPKVLLMDEPCSALDPIATMKVEELIHSLRSE-LTIAIVTHNMQQATRVSD 217 (259)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhcC
Confidence 4566899999999999888888888888877554 577777666666555554
No 438
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=42.69 E-value=25 Score=26.98 Aligned_cols=52 Identities=21% Similarity=0.292 Sum_probs=34.8
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELS 125 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~ 125 (183)
+.+-+++++||--.-+|......+..++..+.....+++++..-.+.+..++
T Consensus 158 ~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~ 209 (224)
T cd03220 158 ALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLC 209 (224)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 4566899999999998877777777777666443345666555554444443
No 439
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=42.56 E-value=23 Score=26.65 Aligned_cols=53 Identities=25% Similarity=0.325 Sum_probs=37.6
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCC-CeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKL-RRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~-~Q~v~~SAT~~~~v~~~~~ 126 (183)
..+-+++++||--.-+|......+..+++.+.++ .-+++++..-...+..++.
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d 197 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQ 197 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhC
Confidence 4566899999999999988888888888877543 3456666655555555443
No 440
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=42.54 E-value=43 Score=27.56 Aligned_cols=40 Identities=18% Similarity=0.115 Sum_probs=26.9
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEee
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SA 115 (183)
..-+++|+|+||.|-.. -...+-++++.-|.++.+++.|.
T Consensus 112 g~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~~~fiL~~~ 151 (319)
T PRK08769 112 GIAQVVIVDPADAINRA-ACNALLKTLEEPSPGRYLWLISA 151 (319)
T ss_pred CCcEEEEeccHhhhCHH-HHHHHHHHhhCCCCCCeEEEEEC
Confidence 46789999999999543 34444455666566666666654
No 441
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.49 E-value=53 Score=28.84 Aligned_cols=68 Identities=13% Similarity=0.140 Sum_probs=36.0
Q ss_pred CCcEEEeCcH------HHHHHHHhcCCc-CCCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChH
Q 030094 51 GANLLIGTPG------RLYDIMERMDVL-DFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120 (183)
Q Consensus 51 ~~~IiV~TP~------~l~~~l~~~~~~-~l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~ 120 (183)
.+|++--.+. .+.++++..... ....-+++|+||+|.|-...+ +.+...++.-|+....++. +|-...
T Consensus 84 ~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fIla-tte~~K 158 (491)
T PRK14964 84 HPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFILA-TTEVKK 158 (491)
T ss_pred CCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEEEE-eCChHH
Confidence 3566664442 344444431111 135678999999998854333 3344445554544445544 343333
No 442
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=42.46 E-value=56 Score=25.70 Aligned_cols=28 Identities=29% Similarity=0.500 Sum_probs=17.8
Q ss_pred eEEEEcccchhhccc---h-HHHHHHHHHhCC
Q 030094 78 EILVLDEADRLLDMG---F-QKQISYIISRLP 105 (183)
Q Consensus 78 ~~lVvDEad~ll~~~---~-~~~l~~i~~~l~ 105 (183)
..+++||+|.|...+ + .+.+..+++.+.
T Consensus 107 ~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e 138 (261)
T TIGR02881 107 GVLFIDEAYSLARGGEKDFGKEAIDTLVKGME 138 (261)
T ss_pred CEEEEechhhhccCCccchHHHHHHHHHHHHh
Confidence 589999999986321 2 234555665553
No 443
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=42.32 E-value=54 Score=28.90 Aligned_cols=43 Identities=16% Similarity=0.232 Sum_probs=23.4
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCCh
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~ 119 (183)
..-+++|+||+|.|-... ...+...++.-+ ..-+++|.+|-..
T Consensus 127 ~~~KVvIIDEa~~Ls~~a-~naLLk~LEepp-~~~vfI~aTte~~ 169 (507)
T PRK06645 127 GKHKIFIIDEVHMLSKGA-FNALLKTLEEPP-PHIIFIFATTEVQ 169 (507)
T ss_pred CCcEEEEEEChhhcCHHH-HHHHHHHHhhcC-CCEEEEEEeCChH
Confidence 566899999999885433 233333344333 3334444444433
No 444
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=42.25 E-value=24 Score=27.57 Aligned_cols=54 Identities=17% Similarity=0.165 Sum_probs=39.9
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHh
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~ 127 (183)
..+-+++++||--.-+|......+..+++.+.+...++++++.-...+..++..
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~ 206 (256)
T TIGR03873 153 AQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDH 206 (256)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 355689999999999988888888888888754445677766666665565553
No 445
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=41.92 E-value=32 Score=27.11 Aligned_cols=52 Identities=17% Similarity=0.172 Sum_probs=39.0
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
+.+-+++++||--.-+|......+..++..+... .++++++.-.+.+..++.
T Consensus 167 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~tvi~vtH~~~~~~~~~d 218 (264)
T PRK14243 167 AVQPEVILMDEPCSALDPISTLRIEELMHELKEQ-YTIIIVTHNMQQAARVSD 218 (264)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHHhCC
Confidence 3566899999999999888888888888887654 467776666555555554
No 446
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=41.84 E-value=60 Score=29.26 Aligned_cols=40 Identities=10% Similarity=0.113 Sum_probs=26.0
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEe
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~S 114 (183)
...-+++|+||+|.|-... .+.+...++..+..+.+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 3567899999999985433 334444455555666666654
No 447
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=41.77 E-value=22 Score=27.37 Aligned_cols=53 Identities=21% Similarity=0.165 Sum_probs=37.1
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
..+-+++++||--.=+|......+..+++.+.+...++++++.-.+.+..++.
T Consensus 153 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d 205 (237)
T PRK11614 153 MSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLAD 205 (237)
T ss_pred HhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCC
Confidence 45668999999999888877888888777765444566666554444454444
No 448
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=41.66 E-value=1.7e+02 Score=23.03 Aligned_cols=44 Identities=7% Similarity=-0.036 Sum_probs=30.7
Q ss_pred CceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCCh
Q 030094 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (183)
Q Consensus 76 ~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~ 119 (183)
.=+++|+++++.+.+....+.+..+++..+.+..+++++..++.
T Consensus 46 ~~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~~ 89 (302)
T TIGR01128 46 ERRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLDK 89 (302)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCCH
Confidence 34799999999876434456777777777777766766655544
No 449
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=41.65 E-value=26 Score=26.39 Aligned_cols=51 Identities=22% Similarity=0.248 Sum_probs=35.3
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEEL 124 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~ 124 (183)
..+-+++++||--.-+|......+..+++.+.+...++++++.-.+.+..+
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~ 202 (214)
T cd03292 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTT 202 (214)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 456689999999988888778888887777644344666666555444443
No 450
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=41.62 E-value=90 Score=19.72 Aligned_cols=52 Identities=8% Similarity=0.136 Sum_probs=28.1
Q ss_pred EEEEeCcHH-HHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcH
Q 030094 2 GMIISPTRE-LSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG 60 (183)
Q Consensus 2 alIl~Ptre-La~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~ 60 (183)
++++||+.- .+.-+...+++..... ++....-. .+..+. . ..++|++++|..
T Consensus 2 ilvvC~~G~~tS~ll~~kl~~~f~~~-~i~~~~~~--~~~~~~--~--~~~~DlIisT~~ 54 (86)
T cd05563 2 ILAVCGSGLGSSLMLKMNVEKVLKEL-GIEAEVEH--TDLGSA--K--ASSADIIVTSKD 54 (86)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHHC-CCcEEEEE--eccccc--C--CCCCCEEEEchh
Confidence 688998854 4444445666655444 43322211 122111 1 247899999984
No 451
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=41.47 E-value=31 Score=32.72 Aligned_cols=31 Identities=26% Similarity=0.497 Sum_probs=24.1
Q ss_pred EEEeCcHHHHHHHHhcCCcCCCCceEEEEcccchh
Q 030094 54 LLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRL 88 (183)
Q Consensus 54 IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEad~l 88 (183)
|+.+|-+-++..+.+ + +..+.++++||.|.-
T Consensus 475 i~fctvgvllr~~e~-g---lrg~sh~i~deiher 505 (1282)
T KOG0921|consen 475 IMFCTVGVLLRMMEN-G---LRGISHVIIDEIHER 505 (1282)
T ss_pred eeeeccchhhhhhhh-c---ccccccccchhhhhh
Confidence 677788888888776 3 456778999999885
No 452
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=41.38 E-value=33 Score=27.11 Aligned_cols=52 Identities=19% Similarity=0.125 Sum_probs=38.1
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
..+-+++++||--.-+|......+..+++.+.+. .+++++..-...+..++.
T Consensus 170 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-~tiiivtH~~~~~~~~~d 221 (269)
T PRK14259 170 AIEPEVILMDEPCSALDPISTLKIEETMHELKKN-FTIVIVTHNMQQAVRVSD 221 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhcC
Confidence 4566899999999988887788888888877543 567776666555555554
No 453
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=41.28 E-value=28 Score=26.17 Aligned_cols=52 Identities=25% Similarity=0.285 Sum_probs=34.8
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELS 125 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~ 125 (183)
..+-+++++||--.-+|......+..++..+.+...+++++..-.+.+..++
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~ 193 (208)
T cd03268 142 LGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVA 193 (208)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhc
Confidence 4566899999999999888888888888776543345555544443333333
No 454
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=41.21 E-value=25 Score=27.44 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=38.0
Q ss_pred CceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 76 ~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
+-+++++||--.-+|......+..+++.+.+...++++++.-...+..+++
T Consensus 151 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d 201 (248)
T PRK03695 151 AGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHAD 201 (248)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCC
Confidence 348999999999998888888888888775444567776666555566555
No 455
>TIGR00069 hisD histidinol dehydrogenase. This model describes a polypeptide sequence catalyzing the final step in histidine biosynthesis, found sometimes as an independent protein and sometimes as a part of a multifunctional protein.
Probab=40.72 E-value=80 Score=26.90 Aligned_cols=67 Identities=19% Similarity=0.335 Sum_probs=40.7
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
+++.++++.+|+.++.+.+.+....+|. .+--...+.+.+.=|++.+.+.-.++. +.+-+.++.+.
T Consensus 233 ~~iLvT~s~~la~~V~~~v~~ql~~l~r-----------~~i~~~al~~~g~ii~v~~l~ea~~~~---N~~APEHLel~ 298 (393)
T TIGR00069 233 QAILVTTSEELAEAVQEEIERQLATLPR-----------REIARKSLEDNGAIILVDDLEEAIEIS---NDYAPEHLELQ 298 (393)
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHhCCh-----------HHHHHHHHHhCCEEEEECCHHHHHHHH---HhhChHhheeh
Confidence 4788999999999999999998776541 111112232233445555555555544 23556666644
Q ss_pred E
Q 030094 81 V 81 (183)
Q Consensus 81 V 81 (183)
+
T Consensus 299 ~ 299 (393)
T TIGR00069 299 T 299 (393)
T ss_pred h
Confidence 4
No 456
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=40.21 E-value=24 Score=26.02 Aligned_cols=52 Identities=21% Similarity=0.300 Sum_probs=35.5
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCC-CeEEEEeecCChHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKL-RRTGLFSATQTEAVEELS 125 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~-~Q~v~~SAT~~~~v~~~~ 125 (183)
..+-+++++||--.-+|......+..++..+.++ ..++++++.-...+..++
T Consensus 113 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~ 165 (180)
T cd03214 113 AQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYA 165 (180)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 4566899999999888877788888888777543 335565555544444444
No 457
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=40.17 E-value=32 Score=26.67 Aligned_cols=52 Identities=21% Similarity=0.173 Sum_probs=37.8
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
..+-+++++||--.-+|......+..+++.+.+. .+++++..-.+.+..++.
T Consensus 164 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d 215 (252)
T PRK14239 164 ATSPKIILLDEPTSALDPISAGKIEETLLGLKDD-YTMLLVTRSMQQASRISD 215 (252)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhC-CeEEEEECCHHHHHHhCC
Confidence 4566899999999999988888888888887544 456666555545555554
No 458
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=40.13 E-value=20 Score=31.55 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=20.9
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIIS 102 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~ 102 (183)
..+-|.+|+||+|+|-...|...++.+-+
T Consensus 117 ~~ryKVyiIDEvHMLS~~afNALLKTLEE 145 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQAFNALLKTLEE 145 (515)
T ss_pred cccceEEEEecHHhhhHHHHHHHhccccc
Confidence 46678999999999876666655554433
No 459
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=40.12 E-value=39 Score=30.10 Aligned_cols=45 Identities=16% Similarity=0.174 Sum_probs=24.5
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~ 120 (183)
...-+++|+||+|.|....+. .+...++.-|....+|+ .+|-+..
T Consensus 117 ~~~~kViIIDE~~~Lt~~a~n-aLLKtLEepp~~~ifIl-att~~~k 161 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGAFN-ALLKTLEEPPAHVIFIL-ATTEPHK 161 (559)
T ss_pred cCCeEEEEEECcccCCHHHHH-HHHHHhcCCCCCeEEEE-EeCChhh
Confidence 355689999999998544333 33333444333333333 3444433
No 460
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=39.96 E-value=29 Score=26.53 Aligned_cols=53 Identities=21% Similarity=0.238 Sum_probs=36.6
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCC-hHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT-EAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~-~~v~~~~~ 126 (183)
..+-+++++||--.-+|......+..++..+.+...++++++.-. ..+..+++
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d 212 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFD 212 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCC
Confidence 345689999999999988778888888777644334555555544 46555554
No 461
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=39.92 E-value=62 Score=27.89 Aligned_cols=64 Identities=14% Similarity=0.216 Sum_probs=39.6
Q ss_pred CceEEEEcccchhhcc--------chHHHHHHHHHhC----CCCCeEEEEeec-CChHHHHHHHhhCCCCeEEEEcc
Q 030094 76 NLEILVLDEADRLLDM--------GFQKQISYIISRL----PKLRRTGLFSAT-QTEAVEELSKAGLRNPVRVEVRA 139 (183)
Q Consensus 76 ~l~~lVvDEad~ll~~--------~~~~~l~~i~~~l----~~~~Q~v~~SAT-~~~~v~~~~~~~~~~~~~i~~~~ 139 (183)
.-.++.+||+|.++.. +-.-..+.++... ..+-++++++|| .|.++.+-+...+....+|-..+
T Consensus 245 qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd 321 (428)
T KOG0740|consen 245 QPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPD 321 (428)
T ss_pred CCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhceeeecCCC
Confidence 3457789999999853 1122333333333 244578888888 57777777777666666655443
No 462
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=39.82 E-value=1e+02 Score=19.88 Aligned_cols=32 Identities=19% Similarity=0.357 Sum_probs=20.7
Q ss_pred CceEEEEEc-CcchHHHHHHHHhcCCcEEEeCc
Q 030094 28 DVKSVLLVG-GVEVKADVKKIEEEGANLLIGTP 59 (183)
Q Consensus 28 ~~~~~~~~g-~~~~~~~~~~l~~~~~~IiV~TP 59 (183)
.+.++.... .....+-...+...|++=++.-|
T Consensus 34 ~v~~a~~~~~~P~i~~~l~~l~~~g~~~vvvvP 66 (101)
T cd03409 34 PYYVGFQSGLGPDTEEAIRELAEEGYQRVVIVP 66 (101)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHcCCCeEEEEe
Confidence 456666666 56677767777666766666666
No 463
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.77 E-value=45 Score=24.82 Aligned_cols=46 Identities=24% Similarity=0.205 Sum_probs=33.3
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCCh
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~ 119 (183)
+.+-+++++||-..-+|......+..+++.+.+...+++++..-.+
T Consensus 124 ~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 124 AAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred hcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 4666899999999999888888888888776543445555554443
No 464
>PRK13770 histidinol dehydrogenase; Provisional
Probab=39.59 E-value=74 Score=27.30 Aligned_cols=27 Identities=7% Similarity=0.081 Sum_probs=23.5
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCC
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLP 27 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~ 27 (183)
+++.++++++|+.++.+.+.+....+|
T Consensus 254 ~~iLvT~s~~la~~V~~ev~~ql~~lp 280 (416)
T PRK13770 254 RTYVISEDAQVLKDLESRIAKALPNVD 280 (416)
T ss_pred cEEEEeCCHHHHHHHHHHHHHHHHhCC
Confidence 478899999999999999999877664
No 465
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=39.45 E-value=32 Score=27.59 Aligned_cols=53 Identities=19% Similarity=0.224 Sum_probs=37.5
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
..+-+++++||--.-+|......+..+++.+.+...+++++..-.+.+..++.
T Consensus 160 ~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~d 212 (288)
T PRK13643 160 AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYAD 212 (288)
T ss_pred HhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC
Confidence 34568999999999999888888888888775444466665555444445444
No 466
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=39.44 E-value=24 Score=27.16 Aligned_cols=53 Identities=19% Similarity=0.210 Sum_probs=36.9
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCC-CeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKL-RRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~-~Q~v~~SAT~~~~v~~~~~ 126 (183)
..+-+++++||--.-+|......+..+++.+.++ ..+++++..-.+.+..++.
T Consensus 161 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d 214 (243)
T TIGR02315 161 AQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYAD 214 (243)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcC
Confidence 4566899999999999888888888888776432 3466666555544444443
No 467
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=39.43 E-value=1.2e+02 Score=26.51 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=32.3
Q ss_pred EEeC--cHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCc
Q 030094 4 IISP--TRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTP 59 (183)
Q Consensus 4 Il~P--treLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP 59 (183)
+.+| +++.....++.+..+++.. +.....+..+.+..+..+.+...+||++||-.
T Consensus 343 vgt~~~~~~~~~~d~~~l~~~~~~~-~~~~~vive~~D~~el~~~i~~~~pDLlIgG~ 399 (457)
T CHL00073 343 IGIPYMDKRYQAAELALLEDTCRKM-NVPMPRIVEKPDNYNQIQRIRELQPDLAITGM 399 (457)
T ss_pred EEeCCCChhhhHHHHHHHHHHhhhc-CCCCcEEEeCCCHHHHHHHHhhCCCCEEEccc
Confidence 4556 5665555555565555433 33233344455666666666667899999874
No 468
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=39.23 E-value=27 Score=28.18 Aligned_cols=53 Identities=25% Similarity=0.253 Sum_probs=39.1
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
+.+-+++++||--.-+|......+..+++.+.+...+++++..-.+.+..++.
T Consensus 140 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d 192 (302)
T TIGR01188 140 IHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCD 192 (302)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC
Confidence 45668999999999888877888888887775444567777666666665554
No 469
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=39.19 E-value=27 Score=26.71 Aligned_cols=53 Identities=23% Similarity=0.258 Sum_probs=38.5
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCC-CeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKL-RRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~-~Q~v~~SAT~~~~v~~~~~ 126 (183)
..+-+++++||--.-+|......+..++..+.+. ..+++++..-.+.+..++.
T Consensus 147 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d 200 (230)
T TIGR03410 147 VTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELAD 200 (230)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCC
Confidence 4566899999999999988888888888877542 4566666666555555544
No 470
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=39.07 E-value=40 Score=27.71 Aligned_cols=61 Identities=10% Similarity=0.160 Sum_probs=35.8
Q ss_pred CcEEEeCcH-------HHHHHHHhc--CCcCCCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEe
Q 030094 52 ANLLIGTPG-------RLYDIMERM--DVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (183)
Q Consensus 52 ~~IiV~TP~-------~l~~~l~~~--~~~~l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~S 114 (183)
||+.+-.|. .+.++++.. .. ....-+++|+||||.|-.. -...+...++.-|+.+..++.+
T Consensus 78 pD~~~i~~~~~~i~id~ir~l~~~~~~~~-~~~~~kvviI~~a~~~~~~-a~NaLLK~LEEPp~~~~~Il~t 147 (329)
T PRK08058 78 PDVHLVAPDGQSIKKDQIRYLKEEFSKSG-VESNKKVYIIEHADKMTAS-AANSLLKFLEEPSGGTTAILLT 147 (329)
T ss_pred CCEEEeccccccCCHHHHHHHHHHHhhCC-cccCceEEEeehHhhhCHH-HHHHHHHHhcCCCCCceEEEEe
Confidence 577776663 334443320 11 2356689999999998543 3445555566655556666543
No 471
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=38.81 E-value=27 Score=26.26 Aligned_cols=47 Identities=19% Similarity=0.297 Sum_probs=34.3
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~ 120 (183)
+.+-+++++||--.-+|......+..++..+.+...++++++.-.+.
T Consensus 120 ~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~ 166 (200)
T cd03217 120 LLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRL 166 (200)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 45668999999998888877888888887775444566665554443
No 472
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=38.73 E-value=28 Score=26.88 Aligned_cols=53 Identities=23% Similarity=0.295 Sum_probs=37.8
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCC-CeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKL-RRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~-~Q~v~~SAT~~~~v~~~~~ 126 (183)
..+-+++++||-..-+|......+..++..+..+ ..+++++..-...+..++.
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d 199 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVAD 199 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcC
Confidence 3556899999999999888888888888776543 4566666665555555544
No 473
>PF05729 NACHT: NACHT domain
Probab=38.68 E-value=1.3e+02 Score=20.85 Aligned_cols=58 Identities=19% Similarity=0.310 Sum_probs=32.9
Q ss_pred EEEEcccchhhccc-------hHHHHHHHHHh-CCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEcc
Q 030094 79 ILVLDEADRLLDMG-------FQKQISYIISR-LPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRA 139 (183)
Q Consensus 79 ~lVvDEad~ll~~~-------~~~~l~~i~~~-l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~ 139 (183)
++|+|-.|.+.... +...+..++.. ++++.++++.|.+-. ... ....+..+..+.+..
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~--~~~-~~~~~~~~~~~~l~~ 149 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRA--FPD-LRRRLKQAQILELEP 149 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCCh--HHH-HHHhcCCCcEEEECC
Confidence 58999999997632 23445555555 455666666554322 223 444455555555543
No 474
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=38.66 E-value=27 Score=27.78 Aligned_cols=53 Identities=23% Similarity=0.216 Sum_probs=38.5
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
..+-+++++||--.-+|......+..++..+.+...+++++..-.+.+..++.
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d 213 (280)
T PRK13649 161 AMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYAD 213 (280)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCC
Confidence 45568999999999998877888888877765444577776665555555554
No 475
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.49 E-value=28 Score=26.76 Aligned_cols=53 Identities=21% Similarity=0.172 Sum_probs=38.2
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCC-CeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKL-RRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~-~Q~v~~SAT~~~~v~~~~~ 126 (183)
..+-+++++||--.-+|......+..+++.+.+. ..+++++..-.+.+..+++
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d 205 (235)
T cd03261 152 ALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIAD 205 (235)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcC
Confidence 4566899999999999988888888888877542 4566666655555555544
No 476
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=38.47 E-value=1.4e+02 Score=21.11 Aligned_cols=62 Identities=15% Similarity=0.231 Sum_probs=45.0
Q ss_pred EEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHH
Q 030094 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIME 67 (183)
Q Consensus 3 lIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~ 67 (183)
.|+=.|-....|..+++++.-. .+++..+..+.+.+.-.+.....+|..++-+.......++
T Consensus 2 ~ILGsTGSIG~qtLdVi~~~~d---~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~ 63 (129)
T PF02670_consen 2 AILGSTGSIGTQTLDVIRKHPD---KFEVVALSAGSNIEKLAEQAREFKPKYVVIADEEAYEELK 63 (129)
T ss_dssp EEESTTSHHHHHHHHHHHHCTT---TEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHH
T ss_pred EEEcCCcHHHHHHHHHHHhCCC---ceEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHH
Confidence 4677889999999999999832 6889889888888777666666677776666554444443
No 477
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.46 E-value=64 Score=28.22 Aligned_cols=40 Identities=18% Similarity=0.290 Sum_probs=22.5
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeec
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT 116 (183)
..-+++|+||||.|....+ ..+...++..|... ++++.+|
T Consensus 118 ~~~KVvIIDEad~Lt~~a~-naLLk~LEepp~~~-v~Il~tt 157 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAF-NALLKTLEEPPPRT-IFILCTT 157 (486)
T ss_pred CCeeEEEEEChhhcCHHHH-HHHHHHHhcCCCCe-EEEEEEC
Confidence 5568999999998854333 33334444433333 3334343
No 478
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=38.42 E-value=42 Score=25.83 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=38.4
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
..+-+++++||--.-+|......+..+++.+... .++++++.-.+.+..++.
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d 210 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGK-HSVVVVEHDMEFVRSIAD 210 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcC-CEEEEEECCHHHHHHhCC
Confidence 4566899999999999988888888888887554 466666665555555444
No 479
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=38.28 E-value=31 Score=26.97 Aligned_cols=53 Identities=19% Similarity=0.240 Sum_probs=36.7
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
..+-+++++||--.-+|......+..+++.+.+...+++++..-...+..++.
T Consensus 168 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d 220 (257)
T PRK10619 168 AMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSS 220 (257)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC
Confidence 45668999999999998888888888888775433455555544444444444
No 480
>PRK06921 hypothetical protein; Provisional
Probab=38.19 E-value=2e+02 Score=22.81 Aligned_cols=91 Identities=14% Similarity=0.166 Sum_probs=44.8
Q ss_pred ceEEEEEcCcchHH------HHHHHHhc-CCcEEEeCcHHHHHHHHhc-----CCc-CCCCceEEEEcccch-hhc----
Q 030094 29 VKSVLLVGGVEVKA------DVKKIEEE-GANLLIGTPGRLYDIMERM-----DVL-DFRNLEILVLDEADR-LLD---- 90 (183)
Q Consensus 29 ~~~~~~~g~~~~~~------~~~~l~~~-~~~IiV~TP~~l~~~l~~~-----~~~-~l~~l~~lVvDEad~-ll~---- 90 (183)
-....++|...... -...+... +..++..|...+...+... ..+ .+.++.+||+||++. +-+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~~~~g~e~~ 196 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFKPVNGKPRA 196 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccccccCCCccC
Confidence 34566777544221 12223333 6777766665554444220 011 256789999999955 111
Q ss_pred cch-HHHHHHHHHhCC-CCCeEEEEeecCChH
Q 030094 91 MGF-QKQISYIISRLP-KLRRTGLFSATQTEA 120 (183)
Q Consensus 91 ~~~-~~~l~~i~~~l~-~~~Q~v~~SAT~~~~ 120 (183)
..+ ...+-.|++... ....+ ++|+.++++
T Consensus 197 t~~~~~~lf~iin~R~~~~k~t-Iitsn~~~~ 227 (266)
T PRK06921 197 TEWQIEQMYSVLNYRYLNHKPI-LISSELTID 227 (266)
T ss_pred CHHHHHHHHHHHHHHHHCCCCE-EEECCCCHH
Confidence 112 234555554442 23445 445656544
No 481
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=38.14 E-value=36 Score=25.73 Aligned_cols=47 Identities=21% Similarity=0.219 Sum_probs=33.8
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCC-CCeEEEEeecCChH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLFSATQTEA 120 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~-~~Q~v~~SAT~~~~ 120 (183)
..+-+++++||--.-+|......+..++..+.+ ...+++++..-.+.
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 203 (218)
T cd03255 156 ANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL 203 (218)
T ss_pred ccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH
Confidence 455689999999999988888888888887754 23456665544433
No 482
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=38.08 E-value=70 Score=25.81 Aligned_cols=54 Identities=31% Similarity=0.249 Sum_probs=40.0
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhh
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAG 128 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~ 128 (183)
..-+++|+||=-.=+|.=..+.++..+..+...--+++||...=..++++++..
T Consensus 147 HePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~l 200 (300)
T COG4152 147 HEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRL 200 (300)
T ss_pred cCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhh
Confidence 445788999986666654566777777777667778888888878888888764
No 483
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.06 E-value=25 Score=26.95 Aligned_cols=53 Identities=21% Similarity=0.249 Sum_probs=37.6
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCC-CeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKL-RRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~-~Q~v~~SAT~~~~v~~~~~ 126 (183)
+.+-+++++||--.-+|......+..++..+.+. ..+++++..-.+.+..++.
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d 209 (233)
T cd03258 156 ANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICD 209 (233)
T ss_pred hcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 4566899999999988887788888888776443 3466666655555555544
No 484
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=38.06 E-value=46 Score=27.81 Aligned_cols=69 Identities=9% Similarity=0.196 Sum_probs=40.9
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHH---HHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
|++|.|.+-..+.-...-+.++ +..+..+.....-+.. .....++.|..+||| +++.+ ++|...+
T Consensus 324 QsIIFCNS~~rVELLAkKITel-----GyscyyiHakM~Q~hRNrVFHdFr~G~crnLVct-----DL~TR--GIDiqav 391 (459)
T KOG0326|consen 324 QSIIFCNSTNRVELLAKKITEL-----GYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCT-----DLFTR--GIDIQAV 391 (459)
T ss_pred ceEEEeccchHhHHHHHHHHhc-----cchhhHHHHHHHHhhhhhhhhhhhccccceeeeh-----hhhhc--cccccee
Confidence 6788888876666555544444 3334333332221111 113345779999999 56654 7888887
Q ss_pred eEEE
Q 030094 78 EILV 81 (183)
Q Consensus 78 ~~lV 81 (183)
..+|
T Consensus 392 NvVI 395 (459)
T KOG0326|consen 392 NVVI 395 (459)
T ss_pred eEEE
Confidence 7776
No 485
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=38.06 E-value=32 Score=26.55 Aligned_cols=53 Identities=19% Similarity=0.096 Sum_probs=37.5
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
..+-+++++||--.-+|......+..++..+.+...++++++.-...+..++.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d 205 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCE 205 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcC
Confidence 45668999999999888777777777777665434566666665555555554
No 486
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=38.01 E-value=39 Score=27.57 Aligned_cols=39 Identities=13% Similarity=0.095 Sum_probs=21.8
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEE
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLF 113 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~ 113 (183)
...-+++|+||||.+-... ...+...++..|.....++.
T Consensus 115 ~~~~~vviidea~~l~~~~-~~~Ll~~le~~~~~~~lIl~ 153 (355)
T TIGR02397 115 SGKYKVYIIDEVHMLSKSA-FNALLKTLEEPPEHVVFILA 153 (355)
T ss_pred cCCceEEEEeChhhcCHHH-HHHHHHHHhCCccceeEEEE
Confidence 3555799999999985432 22333334444444444443
No 487
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.90 E-value=66 Score=29.16 Aligned_cols=46 Identities=15% Similarity=0.209 Sum_probs=24.1
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHH
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~ 122 (183)
..-+++|+||+|.|-... ...+...++.-+... ++++.+|-...+.
T Consensus 118 g~~kVIIIDEad~Lt~~a-~naLLk~LEEP~~~~-ifILaTt~~~kll 163 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREA-FNALLKTLEEPPARV-TFVLATTEPHKFP 163 (624)
T ss_pred CCceEEEEEChHhCCHHH-HHHHHHHhhccCCCE-EEEEecCChhhhh
Confidence 456899999999985332 233333343322333 3334444444433
No 488
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=37.87 E-value=32 Score=26.60 Aligned_cols=53 Identities=26% Similarity=0.335 Sum_probs=37.8
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCC-CeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKL-RRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~-~Q~v~~SAT~~~~v~~~~~ 126 (183)
..+-+++++||--.-+|......+..++..+.++ ..+++++..-...+..++.
T Consensus 169 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d 222 (236)
T cd03267 169 LHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALAR 222 (236)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCC
Confidence 3456899999999999988888888888877543 4566666655555444443
No 489
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=37.82 E-value=40 Score=24.64 Aligned_cols=77 Identities=10% Similarity=0.232 Sum_probs=44.9
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcH-HHHHHHHhcCCcCC--CCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPG-RLYDIMERMDVLDF--RNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~-~l~~~l~~~~~~~l--~~l~ 78 (183)
+||+.|+.+....+++.+....... ++.+..- ++.+..+..+.....+-.|++|+.+ ++. .++|+ ..++
T Consensus 12 ~lv~f~Sy~~l~~~~~~~~~~~~~~-~~~v~~q-~~~~~~~~l~~~~~~~~~il~~v~~g~~~------EGiD~~~~~~r 83 (167)
T PF13307_consen 12 VLVFFPSYRRLEKVYERLKERLEEK-GIPVFVQ-GSKSRDELLEEFKRGEGAILLAVAGGSFS------EGIDFPGDLLR 83 (167)
T ss_dssp EEEEESSHHHHHHHHTT-TSS-E-E-TSCEEES-TCCHHHHHHHHHCCSSSEEEEEETTSCCG------SSS--ECESEE
T ss_pred EEEEeCCHHHHHHHHHHHHhhcccc-cceeeec-CcchHHHHHHHHHhccCeEEEEEecccEE------EeecCCCchhh
Confidence 6899999999998888766543211 2322222 4455556666665556678888852 221 34554 4588
Q ss_pred EEEEcccc
Q 030094 79 ILVLDEAD 86 (183)
Q Consensus 79 ~lVvDEad 86 (183)
.+|++-.=
T Consensus 84 ~vii~glP 91 (167)
T PF13307_consen 84 AVIIVGLP 91 (167)
T ss_dssp EEEEES--
T ss_pred eeeecCCC
Confidence 89987764
No 490
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=37.68 E-value=46 Score=26.61 Aligned_cols=53 Identities=19% Similarity=0.242 Sum_probs=39.6
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHh
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~ 127 (183)
..+-+++++||.-.-+|......+..+++.+.++ .+++++..-...+..++..
T Consensus 196 ~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~~~i~~~~dr 248 (285)
T PRK14254 196 APDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNMQQAARISDK 248 (285)
T ss_pred HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHhhcCE
Confidence 3566899999999999988888888888887655 4666666666565665554
No 491
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=37.58 E-value=38 Score=26.36 Aligned_cols=52 Identities=17% Similarity=0.177 Sum_probs=37.3
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
+.+-+++++||--.-+|......+..++..+.+. .++++++.-...+..++.
T Consensus 166 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~tvii~sH~~~~~~~~~d 217 (254)
T PRK14273 166 AIEPNVILMDEPTSALDPISTGKIEELIINLKES-YTIIIVTHNMQQAGRISD 217 (254)
T ss_pred HcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCC
Confidence 4566899999999999988888888888888543 466665555444444444
No 492
>PRK00877 hisD bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed
Probab=37.56 E-value=90 Score=26.89 Aligned_cols=67 Identities=18% Similarity=0.318 Sum_probs=40.2
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
+++.++++++|+.++.+.+.+.....|. .+--...+.+.+.=|++.+-+.-.++.+ .+-+.+|.+.
T Consensus 264 ~aiLvT~s~~la~~V~~~v~~ql~~l~r-----------~~ia~~sl~~~g~iivv~~leeai~~~N---~~APEHLel~ 329 (425)
T PRK00877 264 QSILVTTSEELAEAVAAEVERQLATLPR-----------AEIARASLEGQGAIILVDDLEEAIELSN---AYAPEHLEIQ 329 (425)
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHhCCh-----------HHHHHHHHHhCCEEEEECCHHHHHHHHH---hhChHheeeh
Confidence 4789999999999999999988766541 0111112222233455666555555442 3556666644
Q ss_pred E
Q 030094 81 V 81 (183)
Q Consensus 81 V 81 (183)
+
T Consensus 330 ~ 330 (425)
T PRK00877 330 T 330 (425)
T ss_pred h
Confidence 4
No 493
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=37.38 E-value=32 Score=27.33 Aligned_cols=62 Identities=29% Similarity=0.328 Sum_probs=42.1
Q ss_pred CceEEEEcccchhhccchHHHHHHHHHhCCCCCe--EEEEeecCChHHHHHHHh--hCCCCeEEEEc
Q 030094 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRR--TGLFSATQTEAVEELSKA--GLRNPVRVEVR 138 (183)
Q Consensus 76 ~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q--~v~~SAT~~~~v~~~~~~--~~~~~~~i~~~ 138 (183)
+-+++|+||.=..+|..-...+-.++..+.+.++ .+++|--+ .-+..++.. .|.+-..+...
T Consensus 159 ~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl-~~v~~~cdRi~Vm~~G~ivE~~ 224 (252)
T COG1124 159 EPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDL-ALVEHMCDRIAVMDNGQIVEIG 224 (252)
T ss_pred CCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcH-HHHHHHhhheeeeeCCeEEEee
Confidence 4579999999999999889999999999887775 44444432 234555554 23444444433
No 494
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=37.34 E-value=38 Score=26.36 Aligned_cols=53 Identities=23% Similarity=0.207 Sum_probs=38.9
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHh
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~ 127 (183)
..+-+++++||--.-+|......+..+++.+.+. .++++++.-...+..++.+
T Consensus 165 ~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~-~tvii~sh~~~~~~~~~d~ 217 (253)
T PRK14261 165 AVNPEVILMDEPCSALDPIATAKIEDLIEDLKKE-YTVIIVTHNMQQAARVSDY 217 (253)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhC-ceEEEEEcCHHHHHhhCCE
Confidence 4567899999999999888788888888877554 4666666655555555543
No 495
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.32 E-value=66 Score=23.37 Aligned_cols=46 Identities=30% Similarity=0.314 Sum_probs=33.4
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~ 120 (183)
..+-+++++||--.-+|......+..++..+.+. .+++++..-.+.
T Consensus 112 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~-~tii~~sh~~~~ 157 (171)
T cd03228 112 LRDPPILILDEATSALDPETEALILEALRALAKG-KTVIVIAHRLST 157 (171)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCC-CEEEEEecCHHH
Confidence 4566899999999888888888888888877544 455555444333
No 496
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=37.28 E-value=55 Score=26.99 Aligned_cols=61 Identities=7% Similarity=0.090 Sum_probs=33.7
Q ss_pred CCcEEEeCcH---------HHHHHHHhcCCc--CCCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEE
Q 030094 51 GANLLIGTPG---------RLYDIMERMDVL--DFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLF 113 (183)
Q Consensus 51 ~~~IiV~TP~---------~l~~~l~~~~~~--~l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~ 113 (183)
-||+..-.|+ .+.++.+. -.. ....-+++|+||||.|-... ...+-+.++.-|.+.-+++.
T Consensus 71 HPD~~~i~~~~~~~~i~id~iR~l~~~-~~~~~~~~~~kv~iI~~a~~m~~~a-aNaLLK~LEEPp~~~~fiL~ 142 (328)
T PRK05707 71 HPDNFVLEPEEADKTIKVDQVRELVSF-VVQTAQLGGRKVVLIEPAEAMNRNA-ANALLKSLEEPSGDTVLLLI 142 (328)
T ss_pred CCCEEEEeccCCCCCCCHHHHHHHHHH-HhhccccCCCeEEEECChhhCCHHH-HHHHHHHHhCCCCCeEEEEE
Confidence 3677766553 34444432 111 23567899999999995433 34444455554444444443
No 497
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=37.22 E-value=48 Score=28.63 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=23.2
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEE
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLF 113 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~ 113 (183)
..-+++|+||+|.|-... ...+...++.-+....+++.
T Consensus 120 ~~~kvvIIdead~lt~~~-~n~LLk~lEep~~~~~~Il~ 157 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEA-FNSLLKTLEEPPQHVKFFLA 157 (451)
T ss_pred CCCEEEEEecHHhhCHHH-HHHHHHHhhcCCCCceEEEE
Confidence 566899999999985432 33444455554444444443
No 498
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=37.18 E-value=29 Score=27.45 Aligned_cols=53 Identities=25% Similarity=0.254 Sum_probs=38.2
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
+.+-+++++||--.-+|......+..++..+.....+++++..-.+.+..++.
T Consensus 152 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d 204 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISD 204 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 45568999999999998888888888887775434567776665555555544
No 499
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=36.94 E-value=63 Score=24.42 Aligned_cols=45 Identities=33% Similarity=0.238 Sum_probs=32.2
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCCh
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~ 119 (183)
..+-+++++||-..-+|......+..+++.+.+.. +++++..-..
T Consensus 155 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~-tii~~sh~~~ 199 (221)
T cd03244 155 LRKSKILVLDEATASVDPETDALIQKTIREAFKDC-TVLTIAHRLD 199 (221)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCC-EEEEEeCCHH
Confidence 35568999999999988877888888888775544 4444444333
No 500
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=36.46 E-value=1.2e+02 Score=25.49 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=26.6
Q ss_pred CceEEEEcccchhhccchHHHHHHHHHhCCC-CCeEEEEeecCChH
Q 030094 76 NLEILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLFSATQTEA 120 (183)
Q Consensus 76 ~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~-~~Q~v~~SAT~~~~ 120 (183)
.--++|+||+|.|.+... +.+-.|++.-.. ..++.++.-+-...
T Consensus 123 ~~~IvvLDEid~L~~~~~-~~LY~L~r~~~~~~~~v~vi~i~n~~~ 167 (366)
T COG1474 123 KTVIVILDEVDALVDKDG-EVLYSLLRAPGENKVKVSIIAVSNDDK 167 (366)
T ss_pred CeEEEEEcchhhhccccc-hHHHHHHhhccccceeEEEEEEeccHH
Confidence 345789999999987643 555566655433 24445544444443
Done!