Query 030094
Match_columns 183
No_of_seqs 141 out of 1420
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 13:25:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030094.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030094hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fe2_A Probable ATP-dependent 100.0 3.3E-28 1.1E-32 189.5 16.9 137 1-140 104-240 (242)
2 2db3_A ATP-dependent RNA helic 100.0 7.7E-28 2.6E-32 202.2 18.2 163 1-181 131-295 (434)
3 3fmo_B ATP-dependent RNA helic 100.0 2.7E-28 9.3E-33 196.2 13.5 136 1-140 164-300 (300)
4 1wrb_A DJVLGB; RNA helicase, D 100.0 1.3E-27 4.5E-32 187.0 16.6 148 1-166 102-253 (253)
5 3bor_A Human initiation factor 99.9 1E-26 3.4E-31 180.7 14.8 137 1-139 100-236 (237)
6 3iuy_A Probable ATP-dependent 99.9 1.3E-26 4.4E-31 178.7 15.1 132 2-137 97-228 (228)
7 3ber_A Probable ATP-dependent 99.9 2.9E-26 9.8E-31 179.7 17.0 136 1-138 113-248 (249)
8 2oxc_A Probable ATP-dependent 99.9 2.1E-26 7.1E-31 178.1 14.8 135 1-138 94-229 (230)
9 2pl3_A Probable ATP-dependent 99.9 5.3E-26 1.8E-30 176.1 16.7 137 1-140 99-235 (236)
10 1t6n_A Probable ATP-dependent 99.9 4.4E-26 1.5E-30 174.7 16.1 136 1-137 84-220 (220)
11 1vec_A ATP-dependent RNA helic 99.9 7.4E-26 2.5E-30 171.5 16.7 132 2-135 74-205 (206)
12 3ly5_A ATP-dependent RNA helic 99.9 1E-25 3.4E-30 177.8 16.4 131 1-133 128-258 (262)
13 1q0u_A Bstdead; DEAD protein, 99.9 3.4E-26 1.2E-30 175.4 12.9 138 1-140 74-214 (219)
14 2gxq_A Heat resistant RNA depe 99.9 3.9E-25 1.3E-29 167.5 15.7 133 1-138 74-206 (207)
15 2i4i_A ATP-dependent RNA helic 99.9 1.4E-24 4.7E-29 179.9 18.9 162 2-181 104-269 (417)
16 1qde_A EIF4A, translation init 99.9 3.6E-25 1.2E-29 169.9 14.3 136 1-140 84-219 (224)
17 2j0s_A ATP-dependent RNA helic 99.9 1.3E-24 4.3E-29 180.1 16.4 161 1-179 107-268 (410)
18 3dkp_A Probable ATP-dependent 99.9 4E-25 1.4E-29 172.0 11.6 139 1-140 100-243 (245)
19 1xti_A Probable ATP-dependent 99.9 1.9E-23 6.4E-28 171.6 19.2 165 2-181 79-244 (391)
20 3eiq_A Eukaryotic initiation f 99.9 1.2E-23 4E-28 174.0 17.4 161 1-178 110-271 (414)
21 3fmp_B ATP-dependent RNA helic 99.9 1.5E-23 5E-28 177.6 13.3 159 1-178 164-324 (479)
22 1fuu_A Yeast initiation factor 99.9 2.1E-22 7.2E-27 165.3 16.6 154 1-173 91-244 (394)
23 1s2m_A Putative ATP-dependent 99.9 7.4E-22 2.5E-26 162.8 17.2 160 1-179 91-250 (400)
24 3sqw_A ATP-dependent RNA helic 99.9 3.9E-22 1.3E-26 172.8 15.0 161 1-172 97-267 (579)
25 3fht_A ATP-dependent RNA helic 99.9 3.5E-22 1.2E-26 164.9 13.9 154 1-173 97-251 (412)
26 3i5x_A ATP-dependent RNA helic 99.9 7.7E-22 2.6E-26 170.0 15.0 160 1-171 148-317 (563)
27 1hv8_A Putative ATP-dependent 99.9 4.1E-21 1.4E-25 155.9 18.1 157 2-181 77-233 (367)
28 2z0m_A 337AA long hypothetical 99.9 1.2E-20 4.2E-25 151.6 18.2 132 1-136 58-189 (337)
29 3pey_A ATP-dependent RNA helic 99.9 8.4E-21 2.9E-25 155.5 14.9 150 1-172 77-227 (395)
30 3fho_A ATP-dependent RNA helic 99.8 2.6E-19 9E-24 153.0 14.7 150 1-172 191-341 (508)
31 3oiy_A Reverse gyrase helicase 99.8 3.6E-20 1.2E-24 153.9 8.9 147 1-171 66-240 (414)
32 4ddu_A Reverse gyrase; topoiso 99.8 8.1E-20 2.8E-24 168.2 10.0 146 1-170 123-296 (1104)
33 2fsf_A Preprotein translocase 99.8 3.7E-19 1.3E-23 157.7 7.5 102 1-106 117-240 (853)
34 1gku_B Reverse gyrase, TOP-RG; 99.8 1.6E-19 5.4E-24 165.9 4.4 141 1-167 101-259 (1054)
35 3l9o_A ATP-dependent RNA helic 99.7 1.7E-17 5.8E-22 152.9 15.3 125 2-140 230-356 (1108)
36 1tf5_A Preprotein translocase 99.7 4.9E-18 1.7E-22 150.8 10.4 116 1-120 126-289 (844)
37 1nkt_A Preprotein translocase 99.7 3.9E-17 1.3E-21 145.3 12.0 116 1-120 154-317 (922)
38 3llm_A ATP-dependent RNA helic 99.7 9.7E-17 3.3E-21 124.2 11.9 119 2-133 112-232 (235)
39 2xgj_A ATP-dependent RNA helic 99.7 4.3E-16 1.5E-20 142.5 17.1 124 2-140 132-258 (1010)
40 4a2p_A RIG-I, retinoic acid in 99.7 1.7E-16 5.7E-21 135.6 12.7 115 1-118 57-177 (556)
41 3tbk_A RIG-I helicase domain; 99.7 1.5E-16 5E-21 135.7 11.2 116 1-119 54-176 (555)
42 4a4z_A Antiviral helicase SKI2 99.6 5.3E-16 1.8E-20 141.8 10.0 115 2-129 85-199 (997)
43 4a2q_A RIG-I, retinoic acid in 99.6 2.1E-15 7.3E-20 135.1 13.7 115 1-118 298-418 (797)
44 3b6e_A Interferon-induced heli 99.6 3.9E-16 1.3E-20 118.1 7.4 113 1-116 84-216 (216)
45 2ykg_A Probable ATP-dependent 99.6 2.8E-15 9.4E-20 132.0 13.7 114 2-118 64-184 (696)
46 2v1x_A ATP-dependent DNA helic 99.6 3E-15 1E-19 130.2 13.2 127 2-133 87-226 (591)
47 1wp9_A ATP-dependent RNA helic 99.6 5.2E-15 1.8E-19 123.2 13.1 123 2-128 55-180 (494)
48 2zj8_A DNA helicase, putative 99.6 2E-15 6.8E-20 133.8 10.4 119 2-128 71-189 (720)
49 2p6r_A Afuhel308 helicase; pro 99.6 3E-15 1E-19 132.4 11.0 120 1-128 70-192 (702)
50 4f92_B U5 small nuclear ribonu 99.6 8.7E-15 3E-19 139.5 13.7 125 2-132 975-1107(1724)
51 4a2w_A RIG-I, retinoic acid in 99.6 8.6E-15 2.9E-19 133.2 12.1 114 2-118 299-418 (936)
52 2va8_A SSO2462, SKI2-type heli 99.6 6E-15 2.1E-19 130.5 10.8 119 2-129 78-196 (715)
53 3o8b_A HCV NS3 protease/helica 99.6 1E-14 3.6E-19 127.7 11.2 103 1-120 259-363 (666)
54 4f92_B U5 small nuclear ribonu 99.6 1.3E-14 4.6E-19 138.2 11.1 122 2-131 137-267 (1724)
55 2eyq_A TRCF, transcription-rep 99.5 5.3E-14 1.8E-18 130.3 12.9 124 1-136 654-780 (1151)
56 1rif_A DAR protein, DNA helica 99.5 6.9E-15 2.4E-19 116.5 5.8 108 2-122 160-267 (282)
57 1oyw_A RECQ helicase, ATP-depe 99.5 9.3E-14 3.2E-18 119.2 12.4 127 2-135 68-204 (523)
58 1gm5_A RECG; helicase, replica 99.5 6.8E-14 2.3E-18 124.9 11.4 113 1-125 419-534 (780)
59 4gl2_A Interferon-induced heli 99.5 2.2E-14 7.5E-19 126.2 5.3 114 2-119 59-193 (699)
60 2ipc_A Preprotein translocase 99.4 3.7E-13 1.3E-17 120.0 9.6 85 1-89 122-215 (997)
61 2oca_A DAR protein, ATP-depend 99.4 1.9E-13 6.6E-18 116.2 7.5 108 1-121 159-266 (510)
62 2xau_A PRE-mRNA-splicing facto 99.3 2.7E-11 9.1E-16 108.3 12.8 125 2-139 143-269 (773)
63 2fwr_A DNA repair protein RAD2 99.3 8.7E-12 3E-16 105.0 8.9 94 1-118 135-229 (472)
64 2whx_A Serine protease/ntpase/ 99.3 4.4E-12 1.5E-16 110.8 6.0 120 1-139 217-337 (618)
65 1yks_A Genome polyprotein [con 99.2 7.7E-13 2.6E-17 111.2 0.3 102 1-126 39-149 (440)
66 3h1t_A Type I site-specific re 99.2 6.6E-12 2.3E-16 108.7 5.5 103 2-120 238-344 (590)
67 2w00_A HSDR, R.ECOR124I; ATP-b 99.2 2E-11 6.9E-16 111.8 8.9 107 2-119 333-440 (1038)
68 2fz4_A DNA repair protein RAD2 99.2 6.6E-11 2.3E-15 91.6 10.3 96 1-120 135-231 (237)
69 2jlq_A Serine protease subunit 99.2 2.3E-11 7.8E-16 102.5 8.3 119 1-138 50-169 (451)
70 2v6i_A RNA helicase; membrane, 99.2 1.1E-10 3.7E-15 97.8 9.9 108 1-124 33-141 (431)
71 3rc3_A ATP-dependent RNA helic 99.1 4.1E-11 1.4E-15 105.5 5.5 115 2-135 182-297 (677)
72 2wv9_A Flavivirin protease NS2 99.1 8.1E-12 2.8E-16 110.0 -0.2 103 1-126 272-382 (673)
73 2z83_A Helicase/nucleoside tri 99.1 8.9E-11 3.1E-15 99.1 5.7 113 1-135 52-169 (459)
74 3crv_A XPD/RAD3 related DNA he 98.7 1.7E-08 5.9E-13 86.9 7.1 87 2-90 50-187 (551)
75 1z63_A Helicase of the SNF2/RA 98.6 2.4E-08 8.3E-13 84.5 4.7 100 2-118 89-188 (500)
76 1z3i_X Similar to RAD54-like; 98.4 1.8E-06 6.2E-11 75.6 11.3 108 2-118 117-231 (644)
77 3mwy_W Chromo domain-containin 98.4 7E-07 2.4E-11 80.1 8.8 119 2-130 289-422 (800)
78 3dmq_A RNA polymerase-associat 98.3 1.7E-07 5.8E-12 85.7 2.0 108 2-118 203-317 (968)
79 2vl7_A XPD; helicase, unknown 98.2 1.4E-06 4.6E-11 74.9 4.9 81 2-89 54-188 (540)
80 3jux_A Protein translocase sub 97.5 0.0003 1E-08 62.4 8.6 85 1-89 118-258 (822)
81 1w36_D RECD, exodeoxyribonucle 97.3 0.00047 1.6E-08 60.0 6.6 98 2-115 199-297 (608)
82 2d7d_A Uvrabc system protein B 96.1 0.0024 8.1E-08 56.1 2.8 74 34-121 303-400 (661)
83 2p6n_A ATP-dependent RNA helic 96.1 0.062 2.1E-06 39.4 10.0 71 2-84 57-130 (191)
84 2hjv_A ATP-dependent RNA helic 96.0 0.06 2.1E-06 38.2 9.2 73 1-85 37-112 (163)
85 1fuk_A Eukaryotic initiation f 95.8 0.083 2.8E-06 37.5 9.2 73 1-85 32-107 (165)
86 3eaq_A Heat resistant RNA depe 95.7 0.069 2.4E-06 39.8 8.9 70 1-82 33-105 (212)
87 2rb4_A ATP-dependent RNA helic 95.6 0.062 2.1E-06 38.6 8.1 71 2-84 37-110 (175)
88 1c4o_A DNA nucleotide excision 95.5 0.0038 1.3E-07 54.9 1.3 57 57-121 314-394 (664)
89 2i4i_A ATP-dependent RNA helic 95.1 0.16 5.5E-06 41.0 9.9 69 2-82 279-350 (417)
90 1t5i_A C_terminal domain of A 95.1 0.35 1.2E-05 34.6 10.7 73 1-85 33-108 (172)
91 2jgn_A DBX, DDX3, ATP-dependen 95.0 0.12 4.2E-06 37.5 8.1 71 1-83 48-121 (185)
92 3pey_A ATP-dependent RNA helic 94.7 0.89 3E-05 36.0 13.2 75 2-88 246-323 (395)
93 3i32_A Heat resistant RNA depe 94.3 0.2 6.9E-06 39.5 8.3 70 1-82 30-102 (300)
94 2d7d_A Uvrabc system protein B 94.3 0.95 3.2E-05 39.6 13.2 75 2-88 448-525 (661)
95 1hv8_A Putative ATP-dependent 94.2 0.26 8.9E-06 38.8 8.8 72 2-85 241-315 (367)
96 3i5x_A ATP-dependent RNA helic 94.1 0.27 9.2E-06 41.7 9.3 75 2-85 342-419 (563)
97 3fht_A ATP-dependent RNA helic 94.1 0.23 7.9E-06 39.9 8.4 71 2-84 269-342 (412)
98 2db3_A ATP-dependent RNA helic 94.0 0.26 9E-06 40.5 8.8 70 2-83 303-375 (434)
99 3sqw_A ATP-dependent RNA helic 93.9 0.3 1E-05 41.7 9.3 76 2-86 291-369 (579)
100 1yks_A Genome polyprotein [con 93.9 0.098 3.4E-06 43.4 5.9 67 1-81 179-245 (440)
101 1c4o_A DNA nucleotide excision 93.6 1.4 4.7E-05 38.6 13.0 75 2-88 442-519 (664)
102 1xti_A Probable ATP-dependent 93.4 0.4 1.4E-05 38.2 8.6 73 2-86 253-328 (391)
103 2j0s_A ATP-dependent RNA helic 93.3 0.38 1.3E-05 38.8 8.5 71 2-84 279-352 (410)
104 1s2m_A Putative ATP-dependent 93.3 0.39 1.3E-05 38.5 8.5 71 2-84 261-334 (400)
105 1oyw_A RECQ helicase, ATP-depe 93.1 0.37 1.3E-05 40.8 8.4 71 2-84 239-312 (523)
106 2eyq_A TRCF, transcription-rep 92.9 0.39 1.3E-05 44.8 8.8 92 1-106 814-908 (1151)
107 2v1x_A ATP-dependent DNA helic 92.9 0.41 1.4E-05 41.4 8.4 71 2-84 270-343 (591)
108 2wv9_A Flavivirin protease NS2 92.4 0.21 7.3E-06 43.9 6.1 67 1-81 412-478 (673)
109 2v6i_A RNA helicase; membrane, 92.4 0.28 9.5E-06 40.5 6.5 66 1-80 173-238 (431)
110 2xau_A PRE-mRNA-splicing facto 91.4 0.45 1.5E-05 42.5 7.0 74 2-82 306-393 (773)
111 2yjt_D ATP-dependent RNA helic 90.7 0.037 1.3E-06 39.6 0.0 71 2-84 33-106 (170)
112 2jlq_A Serine protease subunit 90.7 0.42 1.4E-05 39.6 5.9 67 1-81 190-256 (451)
113 1wp9_A ATP-dependent RNA helic 90.6 1.2 4.1E-05 36.0 8.5 73 2-86 364-447 (494)
114 2whx_A Serine protease/ntpase/ 90.4 0.78 2.7E-05 39.8 7.4 67 1-81 357-423 (618)
115 3rc3_A ATP-dependent RNA helic 90.2 0.84 2.9E-05 40.1 7.6 74 2-88 323-401 (677)
116 2oca_A DAR protein, ATP-depend 89.3 6.2 0.00021 32.7 12.1 74 3-87 351-427 (510)
117 2z0m_A 337AA long hypothetical 89.2 1.1 3.9E-05 34.6 7.0 68 2-85 223-293 (337)
118 3oiy_A Reverse gyrase helicase 88.2 1.2 4.2E-05 35.9 6.8 70 1-85 254-329 (414)
119 3o8b_A HCV NS3 protease/helica 88.1 0.66 2.2E-05 40.8 5.3 63 2-81 399-461 (666)
120 4a15_A XPD helicase, ATP-depen 87.8 0.37 1.3E-05 41.9 3.6 36 2-38 54-89 (620)
121 3eiq_A Eukaryotic initiation f 87.7 0.47 1.6E-05 38.1 4.0 70 2-83 283-355 (414)
122 3vkw_A Replicase large subunit 86.5 2.2 7.6E-05 35.6 7.4 18 2-19 187-204 (446)
123 3fmp_B ATP-dependent RNA helic 85.9 0.15 5.1E-06 42.4 0.0 68 2-81 336-406 (479)
124 3tbk_A RIG-I helicase domain; 85.1 1.7 5.7E-05 36.2 6.1 76 2-85 392-479 (555)
125 4ddu_A Reverse gyrase; topoiso 84.3 1.6 5.5E-05 40.5 6.0 72 1-87 311-388 (1104)
126 2w00_A HSDR, R.ECOR124I; ATP-b 83.6 6.1 0.00021 36.5 9.5 117 2-131 540-722 (1038)
127 2zj8_A DNA helicase, putative 83.6 3.9 0.00013 35.8 8.0 74 1-81 239-343 (720)
128 4gl2_A Interferon-induced heli 83.1 0.47 1.6E-05 41.2 1.9 74 2-82 403-488 (699)
129 2va8_A SSO2462, SKI2-type heli 82.4 4.8 0.00017 35.1 8.1 75 1-82 254-362 (715)
130 3kta_B Chromosome segregation 82.0 1.3 4.3E-05 32.0 3.6 40 76-115 86-125 (173)
131 3fho_A ATP-dependent RNA helic 81.9 0.38 1.3E-05 40.5 0.8 71 1-83 359-432 (508)
132 3h1t_A Type I site-specific re 81.9 4.5 0.00015 34.4 7.6 77 2-85 442-526 (590)
133 2ykg_A Probable ATP-dependent 80.8 1.2 3.9E-05 38.7 3.6 77 2-86 401-489 (696)
134 2z83_A Helicase/nucleoside tri 80.2 1 3.6E-05 37.4 2.9 67 1-81 192-258 (459)
135 4a2p_A RIG-I, retinoic acid in 80.1 2 6.8E-05 35.8 4.7 76 2-85 393-480 (556)
136 1fuu_A Yeast initiation factor 80.0 0.35 1.2E-05 38.5 0.0 69 2-82 262-333 (394)
137 1sxj_E Activator 1 40 kDa subu 78.2 2.4 8.3E-05 33.3 4.5 43 75-118 133-175 (354)
138 1gku_B Reverse gyrase, TOP-RG; 78.2 3.1 0.00011 38.4 5.7 75 1-86 277-352 (1054)
139 3dmq_A RNA polymerase-associat 77.7 8.4 0.00029 35.2 8.3 74 2-86 506-584 (968)
140 2p6r_A Afuhel308 helicase; pro 77.5 8.8 0.0003 33.4 8.2 75 1-82 244-346 (702)
141 4a2q_A RIG-I, retinoic acid in 77.5 2 7E-05 38.1 4.2 76 2-85 634-721 (797)
142 4a2w_A RIG-I, retinoic acid in 76.0 2.7 9.2E-05 38.2 4.5 76 2-85 634-721 (936)
143 3euj_A Chromosome partition pr 75.6 3.4 0.00012 34.8 4.8 36 75-113 413-448 (483)
144 1gm5_A RECG; helicase, replica 75.2 0.49 1.7E-05 42.3 -0.5 81 1-88 580-669 (780)
145 2q5c_A NTRC family transcripti 73.8 16 0.00053 26.6 7.5 60 2-68 7-67 (196)
146 2kjq_A DNAA-related protein; s 71.6 1.2 4.1E-05 31.0 0.9 43 75-118 82-125 (149)
147 3bos_A Putative DNA replicatio 69.5 24 0.00082 25.3 7.9 99 17-117 41-147 (242)
148 3lwd_A 6-phosphogluconolactona 69.1 8 0.00027 29.0 5.1 29 57-86 43-71 (226)
149 2chg_A Replication factor C sm 68.1 14 0.00048 26.0 6.2 40 75-115 101-140 (226)
150 4a15_A XPD helicase, ATP-depen 67.8 3 0.0001 36.1 2.8 40 50-90 174-218 (620)
151 2gk6_A Regulator of nonsense t 67.1 52 0.0018 28.3 10.5 34 51-89 319-352 (624)
152 3lhi_A Putative 6-phosphogluco 66.9 6.9 0.00024 29.4 4.4 28 57-85 44-71 (232)
153 1g5t_A COB(I)alamin adenosyltr 66.1 7.1 0.00024 28.7 4.2 53 75-127 119-173 (196)
154 3e1s_A Exodeoxyribonuclease V, 65.2 8 0.00027 33.1 4.9 37 74-114 277-313 (574)
155 3u61_B DNA polymerase accessor 64.4 4.8 0.00016 31.2 3.2 41 75-115 104-144 (324)
156 3nwp_A 6-phosphogluconolactona 64.3 9.7 0.00033 28.6 4.7 28 57-85 47-74 (233)
157 2wjy_A Regulator of nonsense t 62.6 53 0.0018 29.3 9.8 34 51-89 495-528 (800)
158 1njg_A DNA polymerase III subu 62.3 9.5 0.00032 27.3 4.3 38 76-114 126-163 (250)
159 4aby_A DNA repair protein RECN 61.1 6.9 0.00024 31.5 3.6 39 78-116 317-355 (415)
160 3ec2_A DNA replication protein 60.9 4.2 0.00014 28.6 2.1 46 74-119 98-144 (180)
161 2r2a_A Uncharacterized protein 60.5 6.4 0.00022 28.8 3.0 40 77-116 88-132 (199)
162 3syl_A Protein CBBX; photosynt 59.6 12 0.00039 28.6 4.5 37 78-114 132-176 (309)
163 2gno_A DNA polymerase III, gam 59.4 59 0.002 25.1 11.6 103 17-122 7-126 (305)
164 1vl1_A 6PGL, 6-phosphogluconol 59.4 11 0.00037 28.4 4.2 29 57-86 55-83 (232)
165 3h4m_A Proteasome-activating n 59.3 10 0.00035 28.6 4.2 12 78-89 112-123 (285)
166 1sxj_D Activator 1 41 kDa subu 58.5 13 0.00044 28.9 4.7 39 76-115 133-171 (353)
167 3hjh_A Transcription-repair-co 58.4 20 0.00069 30.0 6.1 59 2-64 42-115 (483)
168 1d2n_A N-ethylmaleimide-sensit 57.9 13 0.00045 27.9 4.6 46 75-120 123-178 (272)
169 1iqp_A RFCS; clamp loader, ext 57.3 25 0.00087 26.7 6.2 39 75-114 109-147 (327)
170 1y89_A DEVB protein; structura 56.5 18 0.00062 27.0 5.0 64 3-86 4-71 (238)
171 1l8q_A Chromosomal replication 56.5 8.9 0.0003 29.7 3.4 41 76-117 98-140 (324)
172 2xzl_A ATP-dependent helicase 56.2 1E+02 0.0034 27.5 10.5 21 2-22 407-427 (802)
173 1a5t_A Delta prime, HOLB; zinc 55.2 13 0.00043 29.2 4.2 39 75-114 107-145 (334)
174 3auy_A DNA double-strand break 55.0 16 0.00055 29.1 4.8 38 77-114 306-343 (371)
175 2ri0_A Glucosamine-6-phosphate 55.0 47 0.0016 24.4 7.2 60 3-84 4-64 (234)
176 4a4z_A Antiviral helicase SKI2 54.9 34 0.0012 31.3 7.4 76 2-85 339-451 (997)
177 2bkx_A Glucosamine-6-phosphate 54.8 49 0.0017 24.4 7.3 83 3-105 3-93 (242)
178 2z4s_A Chromosomal replication 54.6 13 0.00045 30.5 4.3 41 76-116 194-236 (440)
179 1sxj_C Activator 1 40 kDa subu 54.3 15 0.00053 28.6 4.5 39 75-114 109-147 (340)
180 2orw_A Thymidine kinase; TMTK, 53.7 45 0.0015 23.6 6.6 39 76-118 76-114 (184)
181 3te6_A Regulatory protein SIR3 53.2 13 0.00046 29.3 3.9 40 76-118 132-174 (318)
182 1jr3_A DNA polymerase III subu 52.4 15 0.00053 28.6 4.3 39 75-114 118-156 (373)
183 2p65_A Hypothetical protein PF 52.2 5.2 0.00018 27.7 1.3 13 77-89 116-128 (187)
184 2i3b_A HCR-ntpase, human cance 51.6 10 0.00034 27.4 2.8 64 74-140 103-171 (189)
185 3upu_A ATP-dependent DNA helic 51.3 22 0.00075 29.2 5.2 37 74-114 126-162 (459)
186 2xgj_A ATP-dependent RNA helic 50.5 30 0.001 31.8 6.3 75 2-84 346-457 (1010)
187 3l9o_A ATP-dependent RNA helic 50.3 34 0.0012 31.8 6.7 74 1-81 443-553 (1108)
188 1e69_A Chromosome segregation 48.9 14 0.00047 28.9 3.4 42 75-116 240-281 (322)
189 1sxj_B Activator 1 37 kDa subu 48.9 12 0.00043 28.4 3.1 38 76-114 107-144 (323)
190 2o0j_A Terminase, DNA packagin 48.7 1.1E+02 0.0036 24.8 10.0 97 2-114 211-311 (385)
191 4ag6_A VIRB4 ATPase, type IV s 48.2 16 0.00055 29.2 3.8 31 76-106 262-295 (392)
192 3s99_A Basic membrane lipoprot 47.2 64 0.0022 25.6 7.2 116 12-129 43-171 (356)
193 3cpe_A Terminase, DNA packagin 47.1 80 0.0027 26.8 8.2 101 2-119 211-315 (592)
194 3jux_A Protein translocase sub 46.8 35 0.0012 30.6 5.8 53 2-59 477-530 (822)
195 2qen_A Walker-type ATPase; unk 46.4 25 0.00086 26.9 4.6 36 78-114 130-171 (350)
196 1z5z_A Helicase of the SNF2/RA 46.3 51 0.0017 25.0 6.2 74 2-86 115-193 (271)
197 1jr3_D DNA polymerase III, del 45.9 56 0.0019 25.3 6.6 65 74-139 74-141 (343)
198 1jbk_A CLPB protein; beta barr 45.9 32 0.0011 23.3 4.8 13 77-89 116-128 (195)
199 3css_A 6-phosphogluconolactona 44.7 34 0.0012 26.0 5.0 91 3-113 8-107 (267)
200 2qby_A CDC6 homolog 1, cell di 43.9 28 0.00096 27.0 4.6 40 77-116 129-171 (386)
201 3n70_A Transport activator; si 43.8 26 0.00089 23.5 3.9 39 78-118 78-116 (145)
202 2v1u_A Cell division control p 42.3 26 0.00089 27.3 4.1 28 77-104 131-159 (387)
203 2b8t_A Thymidine kinase; deoxy 42.3 99 0.0034 22.8 7.1 57 53-115 68-124 (223)
204 1w1w_A Structural maintenance 40.8 21 0.0007 29.1 3.4 41 75-115 354-395 (430)
205 1tf5_A Preprotein translocase 40.3 44 0.0015 30.2 5.5 52 2-59 435-488 (844)
206 3ico_A 6PGL, 6-phosphogluconol 40.1 32 0.0011 26.4 4.1 55 59-115 67-128 (268)
207 1fnn_A CDC6P, cell division co 39.6 13 0.00043 29.3 1.8 25 77-102 126-150 (389)
208 3hu3_A Transitional endoplasmi 39.3 36 0.0012 28.5 4.6 42 78-119 299-350 (489)
209 2qz4_A Paraplegin; AAA+, SPG7, 37.9 45 0.0015 24.4 4.7 13 77-89 99-111 (262)
210 3eie_A Vacuolar protein sortin 37.8 40 0.0014 26.0 4.5 14 77-90 111-124 (322)
211 2pju_A Propionate catabolism o 37.6 24 0.00083 26.3 3.0 63 2-68 15-79 (225)
212 1z63_A Helicase of the SNF2/RA 37.5 57 0.0019 26.7 5.6 74 2-86 344-422 (500)
213 4ad8_A DNA repair protein RECN 36.9 13 0.00043 31.3 1.5 38 78-115 419-456 (517)
214 3b9p_A CG5977-PA, isoform A; A 36.8 46 0.0016 25.1 4.6 14 77-90 114-127 (297)
215 3cf0_A Transitional endoplasmi 36.4 42 0.0014 25.6 4.4 40 78-117 110-162 (301)
216 2chq_A Replication factor C sm 35.9 26 0.00089 26.5 3.1 39 75-114 101-139 (319)
217 2qby_B CDC6 homolog 3, cell di 35.7 24 0.00083 27.6 3.0 36 79-115 136-172 (384)
218 2fna_A Conserved hypothetical 34.6 52 0.0018 25.1 4.7 36 78-114 139-177 (357)
219 3eb9_A 6-phosphogluconolactona 34.5 26 0.00088 26.8 2.8 44 70-116 61-110 (266)
220 1w5s_A Origin recognition comp 34.4 34 0.0011 27.0 3.6 14 77-90 139-152 (412)
221 3tx2_A Probable 6-phosphogluco 33.9 32 0.0011 26.0 3.2 53 59-113 51-110 (251)
222 3co5_A Putative two-component 33.9 51 0.0018 21.9 4.1 38 78-116 77-115 (143)
223 1f2t_B RAD50 ABC-ATPase; DNA d 33.4 46 0.0016 22.8 3.8 40 76-115 81-121 (148)
224 2zpa_A Uncharacterized protein 32.8 39 0.0014 29.6 4.0 59 52-118 218-289 (671)
225 3oc6_A 6-phosphogluconolactona 32.8 33 0.0011 25.9 3.2 53 59-113 51-110 (248)
226 2qgz_A Helicase loader, putati 31.5 1.6E+02 0.0054 22.6 7.1 73 16-88 137-226 (308)
227 2d2e_A SUFC protein; ABC-ATPas 30.3 54 0.0018 24.5 4.0 43 76-118 161-203 (250)
228 2qp9_X Vacuolar protein sortin 30.3 67 0.0023 25.3 4.7 15 76-90 143-157 (355)
229 2ehv_A Hypothetical protein PH 30.3 26 0.00088 25.5 2.1 47 75-121 134-185 (251)
230 2nq2_C Hypothetical ABC transp 30.2 20 0.00067 27.1 1.5 52 75-126 145-197 (253)
231 1ji0_A ABC transporter; ATP bi 29.7 19 0.00065 26.8 1.3 53 74-126 155-207 (240)
232 2zu0_C Probable ATP-dependent 29.1 66 0.0022 24.3 4.3 42 76-117 182-223 (267)
233 2q5c_A NTRC family transcripti 28.5 1.6E+02 0.0055 21.0 6.5 40 28-68 119-158 (196)
234 2olj_A Amino acid ABC transpor 28.4 23 0.0008 26.9 1.6 52 74-125 175-226 (263)
235 1z3i_X Similar to RAD54-like; 28.0 2.2E+02 0.0074 24.4 7.9 73 2-86 419-497 (644)
236 3r8r_A Transaldolase; pentose 27.4 1.6E+02 0.0053 21.7 5.9 55 8-67 141-195 (212)
237 3uk6_A RUVB-like 2; hexameric 26.9 73 0.0025 24.7 4.4 12 78-89 191-202 (368)
238 2qi9_C Vitamin B12 import ATP- 26.4 24 0.00082 26.6 1.3 48 79-126 154-201 (249)
239 3e15_A Glucose-6-phosphate 1-d 26.3 91 0.0031 24.5 4.7 58 59-116 72-135 (312)
240 1sxj_A Activator 1 95 kDa subu 26.2 83 0.0028 26.2 4.8 41 76-118 148-190 (516)
241 3mwy_W Chromo domain-containin 26.0 3E+02 0.01 24.2 8.5 113 2-130 575-699 (800)
242 2fsf_A Preprotein translocase 25.9 1.1E+02 0.0039 27.6 5.7 52 2-59 444-497 (853)
243 1nkt_A Preprotein translocase 25.4 1.5E+02 0.005 27.1 6.3 52 2-59 463-516 (922)
244 2ixe_A Antigen peptide transpo 24.6 1E+02 0.0035 23.3 4.7 42 74-115 172-214 (271)
245 3d8b_A Fidgetin-like protein 1 24.1 83 0.0028 24.7 4.2 14 77-90 177-190 (357)
246 2bjv_A PSP operon transcriptio 24.1 89 0.0031 23.0 4.2 26 77-103 101-126 (265)
247 1vpl_A ABC transporter, ATP-bi 23.8 18 0.00062 27.4 0.2 46 74-119 162-207 (256)
248 4gic_A HDH, histidinol dehydro 23.8 1.7E+02 0.006 24.0 6.0 67 1-81 273-339 (423)
249 4e0q_A COP9 signalosome comple 23.8 1.6E+02 0.0056 19.9 5.2 53 88-140 66-124 (141)
250 1ofh_A ATP-dependent HSL prote 23.3 1.2E+02 0.004 22.6 4.8 15 77-91 117-131 (310)
251 1fs5_A Glucosamine-6-phosphate 23.1 2E+02 0.0067 21.4 6.1 86 3-107 3-100 (266)
252 1sgw_A Putative ABC transporte 23.1 38 0.0013 24.8 1.9 44 74-117 149-192 (214)
253 1ne7_A Glucosamine-6-phosphate 23.0 1.1E+02 0.0037 23.4 4.6 88 3-106 3-99 (289)
254 3vfd_A Spastin; ATPase, microt 22.9 95 0.0032 24.6 4.4 12 78-89 209-220 (389)
255 2w0m_A SSO2452; RECA, SSPF, un 22.9 68 0.0023 22.7 3.3 43 76-118 121-168 (235)
256 2c9o_A RUVB-like 1; hexameric 22.9 90 0.0031 25.5 4.3 12 78-89 297-308 (456)
257 1xwi_A SKD1 protein; VPS4B, AA 22.6 85 0.0029 24.3 4.0 15 76-90 105-119 (322)
258 3pc6_A DNA repair protein XRCC 22.3 56 0.0019 21.2 2.4 56 30-87 45-100 (104)
259 2yz2_A Putative ABC transporte 22.3 19 0.00065 27.3 0.1 50 74-123 154-203 (266)
260 3kl4_A SRP54, signal recogniti 22.2 1E+02 0.0034 25.4 4.4 55 75-129 178-235 (433)
261 1b0u_A Histidine permease; ABC 21.7 27 0.00092 26.4 0.8 53 74-126 169-221 (262)
262 3s1x_A Probable transaldolase; 21.2 1.7E+02 0.0057 21.8 5.1 55 8-67 143-197 (223)
263 1lv7_A FTSH; alpha/beta domain 21.1 1.3E+02 0.0044 21.9 4.6 13 78-90 106-118 (257)
264 1ye8_A Protein THEP1, hypothet 21.0 1.9E+02 0.0064 20.1 5.3 29 75-103 98-128 (178)
265 2l8b_A Protein TRAI, DNA helic 21.0 63 0.0021 23.5 2.6 65 48-116 77-158 (189)
266 2pjz_A Hypothetical protein ST 20.4 66 0.0023 24.3 2.8 49 75-126 145-193 (263)
No 1
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.96 E-value=3.3e-28 Score=189.53 Aligned_cols=137 Identities=35% Similarity=0.588 Sum_probs=127.7
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.+||++|||+||.|+++.++++.... ++++..++||.....+...+. .+++|+||||+++.+++.+ +..++++++++
T Consensus 104 ~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~l 180 (242)
T 3fe2_A 104 ICLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRDLE-RGVEICIATPGRLIDFLEC-GKTNLRRTTYL 180 (242)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHHHT-TCCEEEECTTSCHHHHHHHHH-HCCSEEEECHHHHHHHHHH-TSCCCTTCCEE
T ss_pred EEEEEeCcHHHHHHHHHHHHHHHhhc-CceEEEEECCCChHHHHHHhc-CCCCEEEECHHHHHHHHHc-CCCCcccccEE
Confidence 37999999999999999999998887 899999999999888877774 5899999999999999988 77889999999
Q ss_pred EEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccC
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAE 140 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~ 140 (183)
|+||||.+++.+|...+..+++.+++++|+++||||++++++.+++.++++|+.|.++.+
T Consensus 181 ViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 181 VLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp EETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred EEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 999999999999999999999999999999999999999999999999999999998765
No 2
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.96 E-value=7.7e-28 Score=202.21 Aligned_cols=163 Identities=30% Similarity=0.454 Sum_probs=147.1
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.+||++||||||.|+++.+++++... ++++..++||.....+...+ ..+++|+||||++|.+++.+ +.+++++++++
T Consensus 131 ~~lil~PtreLa~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l-~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~~~~l 207 (434)
T 2db3_A 131 QVVIVSPTRELAIQIFNEARKFAFES-YLKIGIVYGGTSFRHQNECI-TRGCHVVIATPGRLLDFVDR-TFITFEDTRFV 207 (434)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHTTTS-SCCCCEECTTSCHHHHHHHH-TTCCSEEEECHHHHHHHHHT-TSCCCTTCCEE
T ss_pred cEEEEecCHHHHHHHHHHHHHHhccC-CcEEEEEECCCCHHHHHHHh-hcCCCEEEEChHHHHHHHHh-CCcccccCCeE
Confidence 48999999999999999999998765 78999999999988887776 46899999999999999988 77889999999
Q ss_pred EEcccchhhccchHHHHHHHHHhC--CCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCC
Q 030094 81 VLDEADRLLDMGFQKQISYIISRL--PKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKT 158 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l--~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (183)
|+||||+|++.+|...+..++..+ ++.+|+++||||+++++..++..++.+|..+.+... ...
T Consensus 208 VlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~---------------~~~ 272 (434)
T 2db3_A 208 VLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIV---------------GGA 272 (434)
T ss_dssp EEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESST---------------TCC
T ss_pred EEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccc---------------ccc
Confidence 999999999999999999999885 578999999999999999999999999999988776 456
Q ss_pred ccCceEEEEEecCcchhhhhhcc
Q 030094 159 PLGLHLEVIWNVNQMRNHHNLLI 181 (183)
Q Consensus 159 ~~~l~q~~i~~~~~~k~~~ll~l 181 (183)
..++.|.++.++..+|...++.+
T Consensus 273 ~~~i~~~~~~~~~~~k~~~l~~~ 295 (434)
T 2db3_A 273 CSDVKQTIYEVNKYAKRSKLIEI 295 (434)
T ss_dssp CTTEEEEEEECCGGGHHHHHHHH
T ss_pred ccccceEEEEeCcHHHHHHHHHH
Confidence 77899999999998888877654
No 3
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.96 E-value=2.7e-28 Score=196.21 Aligned_cols=136 Identities=28% Similarity=0.422 Sum_probs=122.6
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
+|||++||||||.|+++.+++++++.+++++....|+....... ..+++|+||||++|.+++.+.+.+++++++++
T Consensus 164 ~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~l 239 (300)
T 3fmo_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 239 (300)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC----CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh----cCCCCEEEECHHHHHHHHHhcCCCChhhceEE
Confidence 48999999999999999999999887789999999887754332 45799999999999999976466789999999
Q ss_pred EEcccchhhc-cchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccC
Q 030094 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAE 140 (183)
Q Consensus 81 VvDEad~ll~-~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~ 140 (183)
|+||||.|++ .+|...+..|++.+++.+|+++||||+++++..+++.++++|+.|.+..+
T Consensus 240 VlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~~e 300 (300)
T 3fmo_B 240 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE 300 (300)
T ss_dssp EETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEECCC
T ss_pred EEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEecCC
Confidence 9999999998 68999999999999999999999999999999999999999999987653
No 4
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.95 E-value=1.3e-27 Score=187.02 Aligned_cols=148 Identities=35% Similarity=0.576 Sum_probs=123.0
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.+||++|||+||.|+++.++++.... ++++..+.||.....+...+ ..+++|+||||+++.+++.. +.+++++++++
T Consensus 102 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~~~l 178 (253)
T 1wrb_A 102 KCLILAPTRELAIQILSESQKFSLNT-PLRSCVVYGGADTHSQIREV-QMGCHLLVATPGRLVDFIEK-NKISLEFCKYI 178 (253)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCSHHHHHHH-SSCCSEEEECHHHHHHHHHT-TSBCCTTCCEE
T ss_pred eEEEEECCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHh-CCCCCEEEECHHHHHHHHHc-CCCChhhCCEE
Confidence 37999999999999999999998765 78899999999888777776 46899999999999999988 77889999999
Q ss_pred EEcccchhhccchHHHHHHHHHh--CCC--CCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccC
Q 030094 81 VLDEADRLLDMGFQKQISYIISR--LPK--LRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASS 156 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~--l~~--~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 156 (183)
|+||||.+++.+|...+..+++. ++. .+|+++||||+++++..+++.++++|..|.++.. .
T Consensus 179 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~---------------~ 243 (253)
T 1wrb_A 179 VLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRV---------------G 243 (253)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC------------------
T ss_pred EEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCC---------------C
Confidence 99999999999999999999995 444 7899999999999999999999999999998877 5
Q ss_pred CCccCceEEE
Q 030094 157 KTPLGLHLEV 166 (183)
Q Consensus 157 ~~~~~l~q~~ 166 (183)
...++|+|++
T Consensus 244 ~~~~~i~q~~ 253 (253)
T 1wrb_A 244 STSDSIKQEI 253 (253)
T ss_dssp ----------
T ss_pred CCcCCceecC
Confidence 5677888764
No 5
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.94 E-value=1e-26 Score=180.71 Aligned_cols=137 Identities=33% Similarity=0.587 Sum_probs=113.5
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.+||++|||+||.|+++.+++++... ++++..+.|+.....+...+...+++|+|+||+++.+++.. +.+.+++++++
T Consensus 100 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~~~~l 177 (237)
T 3bor_A 100 QALVLAPTRELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR-RYLSPKWIKMF 177 (237)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECC-------------CCCSEEEECHHHHHHHHHT-TSSCSTTCCEE
T ss_pred eEEEEECcHHHHHHHHHHHHHHhhhc-CceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh-CCcCcccCcEE
Confidence 47999999999999999999998766 78888999998877777777555599999999999999987 77889999999
Q ss_pred EEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEcc
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRA 139 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~ 139 (183)
|+||||.+++.+|...+..+++.+++.+|++++|||+++++.++++.++++|..|.++.
T Consensus 178 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~~ 236 (237)
T 3bor_A 178 VLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKK 236 (237)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC---
T ss_pred EECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999997654
No 6
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.94 E-value=1.3e-26 Score=178.69 Aligned_cols=132 Identities=33% Similarity=0.554 Sum_probs=116.5
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
+||++|||+||.|+++.++++. . +++++..++||.....+...+ ..+++|+|+||+++.+++.. +.+++++++++|
T Consensus 97 ~lil~Pt~~L~~q~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~lV 172 (228)
T 3iuy_A 97 MLVLTPTRELALHVEAECSKYS-Y-KGLKSICIYGGRNRNGQIEDI-SKGVDIIIATPGRLNDLQMN-NSVNLRSITYLV 172 (228)
T ss_dssp EEEECSSHHHHHHHHHHHHHHC-C-TTCCEEEECC------CHHHH-HSCCSEEEECHHHHHHHHHT-TCCCCTTCCEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHhc-c-cCceEEEEECCCChHHHHHHh-cCCCCEEEECHHHHHHHHHc-CCcCcccceEEE
Confidence 7999999999999999999985 2 378899999998887777776 46899999999999999987 788899999999
Q ss_pred EcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEE
Q 030094 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEV 137 (183)
Q Consensus 82 vDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~ 137 (183)
+||||.+++.+|...+..+++.+++++|++++|||++++++++++.++++|+.|.+
T Consensus 173 iDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 173 IDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp ECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred EECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 99999999999999999999999999999999999999999999999999998864
No 7
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.94 E-value=2.9e-26 Score=179.66 Aligned_cols=136 Identities=38% Similarity=0.660 Sum_probs=124.1
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.+||++|||+||.|+++.++++.... ++++..++||.....+...+ ..+++|+|+||+++.+++.+.+.+++++++++
T Consensus 113 ~~lil~Ptr~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~l 190 (249)
T 3ber_A 113 FALVLTPTRELAFQISEQFEALGSSI-GVQSAVIVGGIDSMSQSLAL-AKKPHIIIATPGRLIDHLENTKGFNLRALKYL 190 (249)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGGG-TCCEEEECTTSCHHHHHHHH-HTCCSEEEECHHHHHHHHHHSTTCCCTTCCEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhccC-CeeEEEEECCCChHHHHHHh-cCCCCEEEECHHHHHHHHHcCCCcCccccCEE
Confidence 38999999999999999999998776 78999999998877776666 46899999999999999987456789999999
Q ss_pred EEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEc
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVR 138 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~ 138 (183)
|+||||++++.+|...+..+++.+++.+|+++||||+++++.++++.++++|+.|.++
T Consensus 191 ViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 191 VMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred EEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999999999999999999999999999999999998764
No 8
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.94 E-value=2.1e-26 Score=178.06 Aligned_cols=135 Identities=30% Similarity=0.532 Sum_probs=122.6
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.+||++|||+|+.|+++.++++....+++++..+.||....++...+ .+++|+|+||+++.+++.. +.+++++++++
T Consensus 94 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~Iiv~Tp~~l~~~~~~-~~~~~~~~~~l 170 (230)
T 2oxc_A 94 QILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL--KKCHIAVGSPGRIKQLIEL-DYLNPGSIRLF 170 (230)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT--TSCSEEEECHHHHHHHHHT-TSSCGGGCCEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc--cCCCEEEECHHHHHHHHhc-CCcccccCCEE
Confidence 37999999999999999999998776689999999998877766555 4799999999999999987 77889999999
Q ss_pred EEcccchhhccc-hHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEc
Q 030094 81 VLDEADRLLDMG-FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVR 138 (183)
Q Consensus 81 VvDEad~ll~~~-~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~ 138 (183)
|+||||.+++.+ |...+..+++.+++.+|++++|||+++++.++++.++++|..|.++
T Consensus 171 ViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~~ 229 (230)
T 2oxc_A 171 ILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLN 229 (230)
T ss_dssp EESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC-
T ss_pred EeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEcC
Confidence 999999999887 9999999999999999999999999999999999999999998653
No 9
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.94 E-value=5.3e-26 Score=176.08 Aligned_cols=137 Identities=42% Similarity=0.656 Sum_probs=121.7
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.+||++|||+||.|+++.++++.... ++++..+.|+.....+...+ .+++|+|+||+++.+++.....+++++++++
T Consensus 99 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~--~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~l 175 (236)
T 2pl3_A 99 GVLIISPTRELAYQTFEVLRKVGKNH-DFSAGLIIGGKDLKHEAERI--NNINILVCTPGRLLQHMDETVSFHATDLQML 175 (236)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-SCCEEEECCC--CHHHHHHH--TTCSEEEECHHHHHHHHHHCSSCCCTTCCEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCC-CeeEEEEECCCCHHHHHHhC--CCCCEEEECHHHHHHHHHhcCCcccccccEE
Confidence 37999999999999999999997665 78999999998877776665 4799999999999999987446788999999
Q ss_pred EEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccC
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAE 140 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~ 140 (183)
|+||||.+++.+|...+..+++.+++.+|++++|||+++++..+++.++++|..|.++++
T Consensus 176 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~ 235 (236)
T 2pl3_A 176 VLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEK 235 (236)
T ss_dssp EETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC-
T ss_pred EEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 999999999999999999999999999999999999999999999999999999987653
No 10
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=4.4e-26 Score=174.66 Aligned_cols=136 Identities=24% Similarity=0.536 Sum_probs=124.5
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.+||++||++|+.|+++.++++.+..+++++..+.|+.....+...+...+++|+|+||+++..++.+ +.+.+++++++
T Consensus 84 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~l 162 (220)
T 1t6n_A 84 SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHF 162 (220)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCCEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHh-CCCCcccCCEE
Confidence 37999999999999999999998877789999999998888877777666789999999999999988 77889999999
Q ss_pred EEcccchhhc-cchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEE
Q 030094 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEV 137 (183)
Q Consensus 81 VvDEad~ll~-~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~ 137 (183)
|+||||.+++ .+|...+..+++.+++.+|++++|||+++++.++++.++++|..|.+
T Consensus 163 ViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~v 220 (220)
T 1t6n_A 163 ILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 220 (220)
T ss_dssp EEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEEC
T ss_pred EEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEeC
Confidence 9999999987 58899999999999999999999999999999999999999998863
No 11
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=7.4e-26 Score=171.49 Aligned_cols=132 Identities=31% Similarity=0.571 Sum_probs=122.2
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
+||++||++|+.|+++.++++.+..+++++..+.|+....++...+ ..+++|+|+||+++.+++.+ +...+++++++|
T Consensus 74 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~lV 151 (206)
T 1vec_A 74 AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL-DDTVHVVIATPGRILDLIKK-GVAKVDHVQMIV 151 (206)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHT-TSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEE
T ss_pred EEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhc-CCCCCEEEeCHHHHHHHHHc-CCcCcccCCEEE
Confidence 7999999999999999999998877788999999998887776665 46899999999999999987 778899999999
Q ss_pred EcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEE
Q 030094 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRV 135 (183)
Q Consensus 82 vDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i 135 (183)
+||||.+.+.+|...+..+++.+++++|++++|||+++++.++++.++++|..|
T Consensus 152 iDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 152 LDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp EETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred EEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 999999999899999999999999999999999999999999999999999876
No 12
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.94 E-value=1e-25 Score=177.78 Aligned_cols=131 Identities=40% Similarity=0.649 Sum_probs=119.4
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.+||++|||+||.|+++.++++.... +.++..++|+.....+...+. .+++|+||||+++.+++.....+.+++++++
T Consensus 128 ~~lil~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~l 205 (262)
T 3ly5_A 128 GVLILSPTRELAMQTFGVLKELMTHH-VHTYGLIMGGSNRSAEAQKLG-NGINIIVATPGRLLDHMQNTPGFMYKNLQCL 205 (262)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTC-CSCEEEECSSSCHHHHHHHHH-HCCSEEEECHHHHHHHHHHCTTCCCTTCCEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHHhc-CCCCEEEEcHHHHHHHHHccCCcccccCCEE
Confidence 48999999999999999999998776 788999999998887777764 4799999999999999988455789999999
Q ss_pred EEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCe
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPV 133 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~ 133 (183)
|+||||++++.+|...+..+++.+++.+|+++||||+++++..+++.+++++.
T Consensus 206 ViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 206 VIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred EEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999998654
No 13
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.94 E-value=3.4e-26 Score=175.39 Aligned_cols=138 Identities=36% Similarity=0.582 Sum_probs=121.5
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCC---CceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLP---DVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~---~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
.+||++|||+||.|+++.++++....+ ++++..+.|+.....+...+ ..+++|+|+||+++.+++.. +.++++++
T Consensus 74 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~ 151 (219)
T 1q0u_A 74 QAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKL-NVQPHIVIGTPGRINDFIRE-QALDVHTA 151 (219)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCC-SSCCSEEEECHHHHHHHHHT-TCCCGGGC
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHc-CCCCCEEEeCHHHHHHHHHc-CCCCcCcc
Confidence 379999999999999999999987653 57888889988766554444 35799999999999999987 77889999
Q ss_pred eEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccC
Q 030094 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAE 140 (183)
Q Consensus 78 ~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~ 140 (183)
+++|+||||.+.+.+|...+..+++.+++.+|++++|||+++++.++++.++++|..|.+...
T Consensus 152 ~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~~ 214 (219)
T 1q0u_A 152 HILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLEH 214 (219)
T ss_dssp CEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC--
T ss_pred eEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeecc
Confidence 999999999999999999999999999999999999999999999999999999999876543
No 14
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.93 E-value=3.9e-25 Score=167.46 Aligned_cols=133 Identities=34% Similarity=0.560 Sum_probs=120.4
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.+||++||++|+.|+++.++++.. .+++..+.|+.....+...+. .+++|+|+||+++.+++.. +.+++++++++
T Consensus 74 ~~lil~P~~~L~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~i 148 (207)
T 2gxq_A 74 RALVLTPTRELALQVASELTAVAP---HLKVVAVYGGTGYGKQKEALL-RGADAVVATPGRALDYLRQ-GVLDLSRVEVA 148 (207)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHCT---TSCEEEECSSSCSHHHHHHHH-HCCSEEEECHHHHHHHHHH-TSSCCTTCSEE
T ss_pred cEEEEECCHHHHHHHHHHHHHHhh---cceEEEEECCCChHHHHHHhh-CCCCEEEECHHHHHHHHHc-CCcchhhceEE
Confidence 379999999999999999998864 467888899888777766664 5899999999999999988 78889999999
Q ss_pred EEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEc
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVR 138 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~ 138 (183)
|+||||.+.+.+|...+..+++.+++.+|++++|||++++++.+++.++.+|..|.+.
T Consensus 149 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 206 (207)
T 2gxq_A 149 VLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVI 206 (207)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEECC
T ss_pred EEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEcC
Confidence 9999999999999999999999999999999999999999999999999999998764
No 15
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.93 E-value=1.4e-24 Score=179.92 Aligned_cols=162 Identities=35% Similarity=0.595 Sum_probs=140.8
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
+||++|||+||.|+++.++++.... ++++..+.||....++...+ ..+++|+|+||++|.+++.. +.+.+++++++|
T Consensus 104 ~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~iV 180 (417)
T 2i4i_A 104 SLVLAPTRELAVQIYEEARKFSYRS-RVRPCVVYGGADIGQQIRDL-ERGCHLLVATPGRLVDMMER-GKIGLDFCKYLV 180 (417)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCHHHHHHHH-TTCCSEEEECHHHHHHHHHT-TSBCCTTCCEEE
T ss_pred EEEECCcHHHHHHHHHHHHHHhCcC-CceEEEEECCCCHHHHHHHh-hCCCCEEEEChHHHHHHHHc-CCcChhhCcEEE
Confidence 7999999999999999999997665 78999999999888887777 46899999999999999988 778899999999
Q ss_pred EcccchhhccchHHHHHHHHHh--CCC--CCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCC
Q 030094 82 LDEADRLLDMGFQKQISYIISR--LPK--LRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSK 157 (183)
Q Consensus 82 vDEad~ll~~~~~~~l~~i~~~--l~~--~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 157 (183)
+||||.+++.+|...+..++.. +++ .+|++++|||+++.+..+...++.+|..+.+... ..
T Consensus 181 iDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------------~~ 245 (417)
T 2i4i_A 181 LDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRV---------------GS 245 (417)
T ss_dssp ESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC-------------------
T ss_pred EEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCC---------------CC
Confidence 9999999999999999999885 333 6899999999999999999999999999888766 56
Q ss_pred CccCceEEEEEecCcchhhhhhcc
Q 030094 158 TPLGLHLEVIWNVNQMRNHHNLLI 181 (183)
Q Consensus 158 ~~~~l~q~~i~~~~~~k~~~ll~l 181 (183)
.+.++.+.++.++..+|...+..+
T Consensus 246 ~~~~i~~~~~~~~~~~~~~~l~~~ 269 (417)
T 2i4i_A 246 TSENITQKVVWVEESDKRSFLLDL 269 (417)
T ss_dssp CCSSEEEEEEECCGGGHHHHHHHH
T ss_pred CccCceEEEEEeccHhHHHHHHHH
Confidence 678899999999888887766543
No 16
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.93 E-value=3.6e-25 Score=169.86 Aligned_cols=136 Identities=34% Similarity=0.592 Sum_probs=113.9
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.+||++|||+|+.|+++.++++.... ++++..+.|+.....+...+ .+++|+|+||+++.+++.+ +.+.+++++++
T Consensus 84 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~--~~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~i 159 (224)
T 1qde_A 84 QALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGL--RDAQIVVGTPGRVFDNIQR-RRFRTDKIKMF 159 (224)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECC----------C--TTCSEEEECHHHHHHHHHT-TSSCCTTCCEE
T ss_pred eEEEEECCHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHhcC--CCCCEEEECHHHHHHHHHh-CCcchhhCcEE
Confidence 37999999999999999999998766 78999999988877666554 3499999999999999988 77889999999
Q ss_pred EEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccC
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAE 140 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~ 140 (183)
|+||||.+.+.+|...+..+++.+++.+|++++|||+++++.++++.++++|..|.+..+
T Consensus 160 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 160 ILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred EEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 999999999999999999999999999999999999999999999999999999987765
No 17
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.92 E-value=1.3e-24 Score=180.11 Aligned_cols=161 Identities=30% Similarity=0.490 Sum_probs=142.7
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.+||++|||+||.|+++.+.+++... ++++..+.|+....++...+. .+++|+|+||+++.+++.. +.+.+.+++++
T Consensus 107 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~~ivv~Tp~~l~~~l~~-~~~~~~~~~~v 183 (410)
T 2j0s_A 107 QALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIRKLD-YGQHVVAGTPGRVFDMIRR-RSLRTRAIKML 183 (410)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECTTSCHHHHHHHHH-HCCSEEEECHHHHHHHHHT-TSSCCTTCCEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhccC-CeEEEEEECCCCHHHHHHHhh-cCCCEEEcCHHHHHHHHHh-CCccHhheeEE
Confidence 47999999999999999999998776 889999999999888877774 5899999999999999988 77889999999
Q ss_pred EEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCCcc
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (183)
|+||||.+++.+|...+..+++.+++.+|++++|||+++++..+...++.+|..+.+... .....
T Consensus 184 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~ 248 (410)
T 2j0s_A 184 VLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRD---------------ELTLE 248 (410)
T ss_dssp EEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGG---------------GCSCT
T ss_pred EEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCc---------------cccCC
Confidence 999999999999999999999999999999999999999999999999999998877665 55677
Q ss_pred CceEEEEEecCcc-hhhhhh
Q 030094 161 GLHLEVIWNVNQM-RNHHNL 179 (183)
Q Consensus 161 ~l~q~~i~~~~~~-k~~~ll 179 (183)
++.++++.++..+ |...+.
T Consensus 249 ~~~~~~~~~~~~~~k~~~l~ 268 (410)
T 2j0s_A 249 GIKQFFVAVEREEWKFDTLC 268 (410)
T ss_dssp TEEEEEEEESSTTHHHHHHH
T ss_pred CceEEEEEeCcHHhHHHHHH
Confidence 8899998887665 554443
No 18
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.92 E-value=4e-25 Score=171.98 Aligned_cols=139 Identities=29% Similarity=0.400 Sum_probs=116.3
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcC-CcCCCCceE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMD-VLDFRNLEI 79 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~-~~~l~~l~~ 79 (183)
.+||++|||+||.|+++.++++.... ++++..+.|+.....+.......+++|+||||+++.+++.... .++++++++
T Consensus 100 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~ 178 (245)
T 3dkp_A 100 RALIISPTRELASQIHRELIKISEGT-GFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEW 178 (245)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-CCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhccc-CceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcE
Confidence 38999999999999999999998776 7888777776544333222334679999999999999998722 578999999
Q ss_pred EEEcccchhhc---cchHHHHHHHHHhCC-CCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccC
Q 030094 80 LVLDEADRLLD---MGFQKQISYIISRLP-KLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAE 140 (183)
Q Consensus 80 lVvDEad~ll~---~~~~~~l~~i~~~l~-~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~ 140 (183)
+|+||||.+++ .+|...+..++..+. ++.|+++||||+++++..+++.++++|+.|.++.+
T Consensus 179 lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 179 LVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp EEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred EEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 99999999998 578999999988764 57899999999999999999999999999998765
No 19
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.92 E-value=1.9e-23 Score=171.63 Aligned_cols=165 Identities=23% Similarity=0.462 Sum_probs=145.5
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
+||++||++|+.|+++.++++....+++++..+.|+.....+...+...+++|+|+||+++..++.. ..+.+++++++|
T Consensus 79 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~vV 157 (391)
T 1xti_A 79 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHFI 157 (391)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCSEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCccccccCEEE
Confidence 7999999999999999999998887789999999999888777777666799999999999999987 778899999999
Q ss_pred Ecccchhhc-cchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCCcc
Q 030094 82 LDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (183)
Q Consensus 82 vDEad~ll~-~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (183)
+||||.+.+ .++...+..++...++.+|++++|||+++.+..++..++.+|..+.+.... .....
T Consensus 158 iDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~ 223 (391)
T 1xti_A 158 LDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDET--------------KLTLH 223 (391)
T ss_dssp ECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCC--------------CCCCT
T ss_pred EeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCcc--------------ccCcc
Confidence 999999987 478899999999999999999999999999999999999999998876652 44567
Q ss_pred CceEEEEEecCcchhhhhhcc
Q 030094 161 GLHLEVIWNVNQMRNHHNLLI 181 (183)
Q Consensus 161 ~l~q~~i~~~~~~k~~~ll~l 181 (183)
++.++++.+...+|...+..+
T Consensus 224 ~~~~~~~~~~~~~~~~~l~~~ 244 (391)
T 1xti_A 224 GLQQYYVKLKDNEKNRKLFDL 244 (391)
T ss_dssp TCEEEEEECCGGGHHHHHHHH
T ss_pred cceEEEEEcCchhHHHHHHHH
Confidence 788999888888877666543
No 20
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.91 E-value=1.2e-23 Score=174.01 Aligned_cols=161 Identities=32% Similarity=0.509 Sum_probs=143.8
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.+||++||++|+.|+++.++++.... +..+..+.|+.....+...+...+++|+|+||+++.+++.. +.+.+++++++
T Consensus 110 ~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~~v 187 (414)
T 3eiq_A 110 QALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMF 187 (414)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHGGGS-CCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHH-TSSCSTTCCEE
T ss_pred eEEEEeChHHHHHHHHHHHHHHhccc-CceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcccccCcEE
Confidence 37999999999999999999998776 78999999999888887777667899999999999999988 78889999999
Q ss_pred EEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCCcc
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (183)
|+||||.+.+.++...+..++..+++.+|++++|||+++.+..+...++.+|..+..... .....
T Consensus 188 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~ 252 (414)
T 3eiq_A 188 VLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKE---------------ELTLE 252 (414)
T ss_dssp EECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCC---------------CCCTT
T ss_pred EEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCC---------------ccCCC
Confidence 999999999999999999999999999999999999999999999999999999887766 66778
Q ss_pred CceEEEEEecCcc-hhhhh
Q 030094 161 GLHLEVIWNVNQM-RNHHN 178 (183)
Q Consensus 161 ~l~q~~i~~~~~~-k~~~l 178 (183)
++.++++.+...+ |...+
T Consensus 253 ~~~~~~~~~~~~~~~~~~l 271 (414)
T 3eiq_A 253 GIRQFYINVEREEWKLDTL 271 (414)
T ss_dssp SCCEEEEECSSSTTHHHHH
T ss_pred CceEEEEEeChHHhHHHHH
Confidence 8888888887665 44444
No 21
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.90 E-value=1.5e-23 Score=177.63 Aligned_cols=159 Identities=25% Similarity=0.344 Sum_probs=119.6
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.+||++|||+||.|+++.++++.++.+++.+....|+....... ..+++|+||||+++.+++.+.+.+++++++++
T Consensus 164 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~i 239 (479)
T 3fmp_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 239 (479)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC----CCCCSEEEECHHHHHHHHTTSCCCCGGGCCEE
T ss_pred cEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc----cCCCCEEEECchHHHHHHHhcCCcCcccCCEE
Confidence 48999999999999999999999887788888888877643321 34689999999999999976566788999999
Q ss_pred EEcccchhhc-cchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCCc
Q 030094 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTP 159 (183)
Q Consensus 81 VvDEad~ll~-~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (183)
|+||||.+++ .++...+..+.+.+++.+|++++|||+++++..++..++++|..+.+..+ ....
T Consensus 240 ViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~---------------~~~~ 304 (479)
T 3fmp_B 240 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE---------------EETL 304 (479)
T ss_dssp EECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC---------------------
T ss_pred EEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEecccc---------------ccCc
Confidence 9999999987 58889999999999999999999999999999999999999999998877 5567
Q ss_pred cCceEEEEEecCc-chhhhh
Q 030094 160 LGLHLEVIWNVNQ-MRNHHN 178 (183)
Q Consensus 160 ~~l~q~~i~~~~~-~k~~~l 178 (183)
.++.|+++.+... .|...+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~l 324 (479)
T 3fmp_B 305 DTIKQYYVLCSSRDEKFQAL 324 (479)
T ss_dssp --------------------
T ss_pred CCceEEEEEeCCHHHHHHHH
Confidence 7788888877653 344433
No 22
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.89 E-value=2.1e-22 Score=165.31 Aligned_cols=154 Identities=31% Similarity=0.512 Sum_probs=123.0
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.+||++||++|+.|+++.+.++.... ++++..+.|+....++...+. +++|+|+||+++...+.. +.+.+.+++++
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~--~~~i~v~T~~~l~~~~~~-~~~~~~~~~~v 166 (394)
T 1fuu_A 91 QALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLR--DAQIVVGTPGRVFDNIQR-RRFRTDKIKMF 166 (394)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECSSCCHHHHHHHHH--HCSEEEECHHHHHHHHHT-TSSCCTTCCEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccC-CeeEEEEeCCCchHHHHhhcC--CCCEEEECHHHHHHHHHh-CCcchhhCcEE
Confidence 37999999999999999999997765 789999999988877766653 689999999999999987 77888999999
Q ss_pred EEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCCcc
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (183)
|+||||.+.+.++...+..++..+++.+|++++|||+++.+..+...++.+|..+..... ...+.
T Consensus 167 IiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~ 231 (394)
T 1fuu_A 167 ILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD---------------ELTLE 231 (394)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC---------------------
T ss_pred EEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCc---------------cccCC
Confidence 999999999989999999999999999999999999999999999999999999887665 44455
Q ss_pred CceEEEEEecCcc
Q 030094 161 GLHLEVIWNVNQM 173 (183)
Q Consensus 161 ~l~q~~i~~~~~~ 173 (183)
++.++++.++..+
T Consensus 232 ~~~~~~~~~~~~~ 244 (394)
T 1fuu_A 232 GIKQFYVNVEEEE 244 (394)
T ss_dssp -------------
T ss_pred CceEEEEEcCchh
Confidence 6666666655444
No 23
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.88 E-value=7.4e-22 Score=162.81 Aligned_cols=160 Identities=29% Similarity=0.476 Sum_probs=137.3
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.+||++||++|+.|+++.++++.... ++++....|+.....+...+ ..+++|+|+||+++.+++.. +...+++++++
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~Ivv~T~~~l~~~~~~-~~~~~~~~~~v 167 (400)
T 1s2m_A 91 QALIMVPTRELALQTSQVVRTLGKHC-GISCMVTTGGTNLRDDILRL-NETVHILVGTPGRVLDLASR-KVADLSDCSLF 167 (400)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECSSSCHHHHHHHT-TSCCSEEEECHHHHHHHHHT-TCSCCTTCCEE
T ss_pred cEEEEcCCHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHHHh-cCCCCEEEEchHHHHHHHHh-CCcccccCCEE
Confidence 37999999999999999999998766 78899999988877766555 46899999999999999987 67789999999
Q ss_pred EEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCCcc
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPL 160 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (183)
|+||||.+.+.+|...+..++..+++..|++++|||++..+..+...++.+|..+....+ ....
T Consensus 168 IiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~ 231 (400)
T 1s2m_A 168 IMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE----------------LTLK 231 (400)
T ss_dssp EEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS----------------CBCT
T ss_pred EEeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc----------------cccC
Confidence 999999999988999999999999999999999999999999999999999987754432 3456
Q ss_pred CceEEEEEecCcchhhhhh
Q 030094 161 GLHLEVIWNVNQMRNHHNL 179 (183)
Q Consensus 161 ~l~q~~i~~~~~~k~~~ll 179 (183)
++.+++..++...|...+.
T Consensus 232 ~~~~~~~~~~~~~k~~~l~ 250 (400)
T 1s2m_A 232 GITQYYAFVEERQKLHCLN 250 (400)
T ss_dssp TEEEEEEECCGGGHHHHHH
T ss_pred CceeEEEEechhhHHHHHH
Confidence 7788888887777765544
No 24
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.88 E-value=3.9e-22 Score=172.84 Aligned_cols=161 Identities=30% Similarity=0.439 Sum_probs=132.7
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhh---hCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFIS---TLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~---~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
.+||++|||+||.|+++.++++.. ..+...+..+.||.....+...+...+++|+||||++|.+++.......++++
T Consensus 97 ~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~ 176 (579)
T 3sqw_A 97 KAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFV 176 (579)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTC
T ss_pred eEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccC
Confidence 379999999999999999999875 33467888999999988888887667899999999999999987334578999
Q ss_pred eEEEEcccchhhccchHHHHHHHHHhCC-------CCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccch
Q 030094 78 EILVLDEADRLLDMGFQKQISYIISRLP-------KLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASS 150 (183)
Q Consensus 78 ~~lVvDEad~ll~~~~~~~l~~i~~~l~-------~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 150 (183)
+++|+||||.+++++|...+..|+..++ ..+|+++||||+++.+..++..++.+|..+.+......
T Consensus 177 ~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~------- 249 (579)
T 3sqw_A 177 DYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKN------- 249 (579)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSS-------
T ss_pred CEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcc-------
Confidence 9999999999999999999999887764 36799999999999999999999999988876543211
Q ss_pred hhcccCCCccCceEEEEEecCc
Q 030094 151 QQLASSKTPLGLHLEVIWNVNQ 172 (183)
Q Consensus 151 ~~~~~~~~~~~l~q~~i~~~~~ 172 (183)
.......+.+.++.++..
T Consensus 250 ----~~~~~~~i~~~~~~~~~~ 267 (579)
T 3sqw_A 250 ----EPEAHERIDQSVVISEKF 267 (579)
T ss_dssp ----SCSSCTTEEEEEEEESST
T ss_pred ----ccccccccceEEEEecch
Confidence 134455677777766543
No 25
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.88 E-value=3.5e-22 Score=164.89 Aligned_cols=154 Identities=25% Similarity=0.359 Sum_probs=133.7
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.+||++||++||.|+++.++++....+++++....|+....... ..+++|+|+||+++.+++.+.+.+++++++++
T Consensus 97 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~i 172 (412)
T 3fht_A 97 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 172 (412)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC----CCCCSEEEECHHHHHHHHTTSCSSCGGGCCEE
T ss_pred CEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh----cCCCCEEEECchHHHHHHHhcCCcChhhCcEE
Confidence 37999999999999999999998887789999888887654332 35789999999999999976466788999999
Q ss_pred EEcccchhhc-cchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCCc
Q 030094 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTP 159 (183)
Q Consensus 81 VvDEad~ll~-~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (183)
|+||||.+++ .++...+..+.+.+++.+|++++|||+++.+..+...++.+|..+.+... ....
T Consensus 173 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~ 237 (412)
T 3fht_A 173 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE---------------EETL 237 (412)
T ss_dssp EEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGG---------------GSSC
T ss_pred EEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccc---------------cccc
Confidence 9999999987 67889999999999999999999999999999999999999999987776 5667
Q ss_pred cCceEEEEEecCcc
Q 030094 160 LGLHLEVIWNVNQM 173 (183)
Q Consensus 160 ~~l~q~~i~~~~~~ 173 (183)
..+.++++.+...+
T Consensus 238 ~~~~~~~~~~~~~~ 251 (412)
T 3fht_A 238 DTIKQYYVLCSSRD 251 (412)
T ss_dssp TTEEEEEEECSSHH
T ss_pred cCceEEEEEcCChH
Confidence 78888888876543
No 26
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.88 E-value=7.7e-22 Score=170.01 Aligned_cols=160 Identities=31% Similarity=0.449 Sum_probs=130.7
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhh---CCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFIST---LPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~---~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
.+|||+|||+||.|+++.++++... .+...+..+.|+.....+...+...+++|+||||+++.+++.+.....++++
T Consensus 148 ~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~ 227 (563)
T 3i5x_A 148 KAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFV 227 (563)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTC
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccc
Confidence 3799999999999999999998653 3457788999999988888877667899999999999999987334568899
Q ss_pred eEEEEcccchhhccchHHHHHHHHHhCC-------CCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccch
Q 030094 78 EILVLDEADRLLDMGFQKQISYIISRLP-------KLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASS 150 (183)
Q Consensus 78 ~~lVvDEad~ll~~~~~~~l~~i~~~l~-------~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 150 (183)
+++|+||||.+++++|...+..++..++ ..+|+++||||+++.+..++..++.+|..+.+......
T Consensus 228 ~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~------- 300 (563)
T 3i5x_A 228 DYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKN------- 300 (563)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSS-------
T ss_pred eEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCC-------
Confidence 9999999999999999999999887763 37799999999999999999999999988876543211
Q ss_pred hhcccCCCccCceEEEEEecC
Q 030094 151 QQLASSKTPLGLHLEVIWNVN 171 (183)
Q Consensus 151 ~~~~~~~~~~~l~q~~i~~~~ 171 (183)
.......+.+.++.++.
T Consensus 301 ----~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 301 ----EPEAHERIDQSVVISEK 317 (563)
T ss_dssp ----SCSSCTTEEEEEEEESS
T ss_pred ----CccccccCceEEEECch
Confidence 13345566676666654
No 27
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.87 E-value=4.1e-21 Score=155.90 Aligned_cols=157 Identities=27% Similarity=0.456 Sum_probs=135.8
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
+||++||++|+.|+++.+.++.... ++++....|+.....+...+. +++|+|+||+++.+.+.. +.+.+++++++|
T Consensus 77 ~lil~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~--~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iI 152 (367)
T 1hv8_A 77 AIILTPTRELAIQVADEIESLKGNK-NLKIAKIYGGKAIYPQIKALK--NANIVVGTPGRILDHINR-GTLNLKNVKYFI 152 (367)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHCSS-CCCEEEECTTSCHHHHHHHHH--TCSEEEECHHHHHHHHHT-TCSCTTSCCEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHhhcC--CCCEEEecHHHHHHHHHc-CCcccccCCEEE
Confidence 7999999999999999999997664 788999999988877766663 789999999999999987 778899999999
Q ss_pred EcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCCccC
Q 030094 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTPLG 161 (183)
Q Consensus 82 vDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (183)
+||||.+.+.++...+..++..+++..|++++|||+++....+...++.++..+.... ..+
T Consensus 153 iDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~ 213 (367)
T 1hv8_A 153 LDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI-------------------NAN 213 (367)
T ss_dssp EETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS-------------------SSS
T ss_pred EeCchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC-------------------CCC
Confidence 9999999999999999999999999999999999999999999999999887765322 346
Q ss_pred ceEEEEEecCcchhhhhhcc
Q 030094 162 LHLEVIWNVNQMRNHHNLLI 181 (183)
Q Consensus 162 l~q~~i~~~~~~k~~~ll~l 181 (183)
+.+.++.+...+|...+..+
T Consensus 214 ~~~~~~~~~~~~~~~~l~~~ 233 (367)
T 1hv8_A 214 IEQSYVEVNENERFEALCRL 233 (367)
T ss_dssp SEEEEEECCGGGHHHHHHHH
T ss_pred ceEEEEEeChHHHHHHHHHH
Confidence 77888888877777666543
No 28
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.87 E-value=1.2e-20 Score=151.62 Aligned_cols=132 Identities=33% Similarity=0.594 Sum_probs=119.6
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.+||++||++|+.|+++.++++.... +.++..+.|+.....+...+ .+++|+|+||+++.+++.. +.+++.+++++
T Consensus 58 ~~liv~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~i 133 (337)
T 2z0m_A 58 KSLVVTPTRELTRQVASHIRDIGRYM-DTKVAEVYGGMPYKAQINRV--RNADIVVATPGRLLDLWSK-GVIDLSSFEIV 133 (337)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECTTSCHHHHHHHH--TTCSEEEECHHHHHHHHHT-TSCCGGGCSEE
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhc-CCcEEEEECCcchHHHHhhc--CCCCEEEECHHHHHHHHHc-CCcchhhCcEE
Confidence 37999999999999999999997766 78999999998887776666 3599999999999999887 77788999999
Q ss_pred EEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEE
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVE 136 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~ 136 (183)
|+||||.+.+.++...+..++...+...|++++|||+++.+......++.++..+.
T Consensus 134 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~ 189 (337)
T 2z0m_A 134 IIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIE 189 (337)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEE
T ss_pred EEEChHHhhccccHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeee
Confidence 99999999999999999999999999999999999999999999999999988774
No 29
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.86 E-value=8.4e-21 Score=155.49 Aligned_cols=150 Identities=29% Similarity=0.414 Sum_probs=127.8
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.+||++||++|+.|+++.++++.... ++.+....|+...... ..+++|+|+||+++..++.+ +...+.+++++
T Consensus 77 ~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~i 149 (395)
T 3pey_A 77 QAICLAPSRELARQTLEVVQEMGKFT-KITSQLIVPDSFEKNK-----QINAQVIVGTPGTVLDLMRR-KLMQLQKIKIF 149 (395)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEESTTSSCTTS-----CBCCSEEEECHHHHHHHHHT-TCBCCTTCCEE
T ss_pred cEEEECCCHHHHHHHHHHHHHHhccc-CeeEEEEecCchhhhc-----cCCCCEEEEcHHHHHHHHHc-CCcccccCCEE
Confidence 37999999999999999999997665 7888877776543222 34799999999999999987 77889999999
Q ss_pred EEcccchhhc-cchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCCc
Q 030094 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTP 159 (183)
Q Consensus 81 VvDEad~ll~-~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (183)
|+||||.+.+ .++...+..+.+.+++.+|++++|||+++.+..+...++.++..+..... ....
T Consensus 150 IiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~ 214 (395)
T 3pey_A 150 VLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTN---------------EVNV 214 (395)
T ss_dssp EEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGG---------------GCSC
T ss_pred EEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEcccc---------------cccc
Confidence 9999999987 67899999999999999999999999999999999999999998877666 5556
Q ss_pred cCceEEEEEecCc
Q 030094 160 LGLHLEVIWNVNQ 172 (183)
Q Consensus 160 ~~l~q~~i~~~~~ 172 (183)
..+.+.+..+...
T Consensus 215 ~~~~~~~~~~~~~ 227 (395)
T 3pey_A 215 DAIKQLYMDCKNE 227 (395)
T ss_dssp TTEEEEEEECSSH
T ss_pred ccccEEEEEcCch
Confidence 7777777776544
No 30
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.81 E-value=2.6e-19 Score=153.05 Aligned_cols=150 Identities=31% Similarity=0.433 Sum_probs=116.0
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.+||++||++|+.|+++.++++.... ++.+....++...... ..+++|+||||+++...+.. +.+.+.+++++
T Consensus 191 ~vLvl~P~~~L~~Q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~Ivv~T~~~l~~~l~~-~~~~~~~~~lI 263 (508)
T 3fho_A 191 QAICLAPSRELARQIMDVVTEMGKYT-EVKTAFGIKDSVPKGA-----KIDAQIVIGTPGTVMDLMKR-RQLDARDIKVF 263 (508)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHSTTS-SCCEEC---------------CCCCSEEEECHHHHHHHHHT-TCSCCTTCCEE
T ss_pred eEEEEECcHHHHHHHHHHHHHhCCcc-CeeEEEEeCCcccccc-----cCCCCEEEECHHHHHHHHHc-CCccccCCCEE
Confidence 37999999999999999999997665 5666655554432221 34789999999999999988 77889999999
Q ss_pred EEcccchhhc-cchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCcccccccchhhcccCCCc
Q 030094 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSHHVSASSQQLASSKTP 159 (183)
Q Consensus 81 VvDEad~ll~-~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (183)
|+||||.+.+ .++...+..+.+.+++..|++++|||+++.+..+...++.++..+.+... ....
T Consensus 264 IiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~---------------~~~~ 328 (508)
T 3fho_A 264 VLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTE---------------ELSV 328 (508)
T ss_dssp EECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCC---------------C---
T ss_pred EEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccc---------------cCCc
Confidence 9999999987 57889999999999999999999999999999999999999998877666 4455
Q ss_pred cCceEEEEEecCc
Q 030094 160 LGLHLEVIWNVNQ 172 (183)
Q Consensus 160 ~~l~q~~i~~~~~ 172 (183)
..+.+.++.+...
T Consensus 329 ~~~~~~~~~~~~~ 341 (508)
T 3fho_A 329 EGIKQLYMDCQSE 341 (508)
T ss_dssp -CCCCEEEEC--C
T ss_pred ccceEEEEECCch
Confidence 6666776666443
No 31
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.81 E-value=3.6e-20 Score=153.92 Aligned_cols=147 Identities=18% Similarity=0.177 Sum_probs=112.2
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcch---HHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEV---KADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~---~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
.+||++|||+||.|+++.+++++. .++++..+.|+.+. ..+...+..+.++|+||||+++.+++.. +.++++
T Consensus 66 ~~lil~Pt~~L~~q~~~~~~~~~~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~---~~~~~~ 140 (414)
T 3oiy_A 66 KSALVFPTVTLVKQTLERLQKLAD--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRF 140 (414)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHCC--SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH---HTTCCC
T ss_pred EEEEEECCHHHHHHHHHHHHHHcc--CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH---hccccc
Confidence 489999999999999999999876 48999999999887 5556666555599999999999988865 667899
Q ss_pred eEEEEcccchh----------hc-cchHHH-HHHHHHhCC-----------CCCeEEEEeec-CChHHH-HHHHhhCCCC
Q 030094 78 EILVLDEADRL----------LD-MGFQKQ-ISYIISRLP-----------KLRRTGLFSAT-QTEAVE-ELSKAGLRNP 132 (183)
Q Consensus 78 ~~lVvDEad~l----------l~-~~~~~~-l~~i~~~l~-----------~~~Q~v~~SAT-~~~~v~-~~~~~~~~~~ 132 (183)
+++|+||||.+ ++ .+|.+. +..+++.++ +.+|++++||| .++.+. .+.+.++.
T Consensus 141 ~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-- 218 (414)
T 3oiy_A 141 DFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-- 218 (414)
T ss_dssp SEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS--
T ss_pred cEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc--
Confidence 99999999654 44 677777 888888776 78999999999 565544 33333332
Q ss_pred eEEEEccCCcccccccchhhcccCCCccCceEEEEEecC
Q 030094 133 VRVEVRAESKSHHVSASSQQLASSKTPLGLHLEVIWNVN 171 (183)
Q Consensus 133 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~i~~~~ 171 (183)
+.+... ...+.++.|.++.++.
T Consensus 219 --~~~~~~---------------~~~~~~i~~~~~~~~~ 240 (414)
T 3oiy_A 219 --FTVGRL---------------VSVARNITHVRISSRS 240 (414)
T ss_dssp --CCSSCC---------------CCCCCSEEEEEESSCC
T ss_pred --cCcCcc---------------ccccccchheeeccCH
Confidence 222222 4556778888876643
No 32
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.80 E-value=8.1e-20 Score=168.21 Aligned_cols=146 Identities=19% Similarity=0.181 Sum_probs=115.5
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcch---HHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEV---KADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~---~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
.+||++||||||.|+++.+++++ . .++++..++|+.+. ..+...+..+.++|+||||++|.+++.. ++++++
T Consensus 123 ~~Lil~PtreLa~Q~~~~l~~l~-~-~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l 197 (1104)
T 4ddu_A 123 KSALVFPTVTLVKQTLERLQKLA-D-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRF 197 (1104)
T ss_dssp CEEEEESSHHHHHHHHHHHHTTS-C-TTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH---HHTSCC
T ss_pred eEEEEechHHHHHHHHHHHHHhh-C-CCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh---hcccCc
Confidence 48999999999999999999986 4 38999999999887 6666677555599999999999998864 677899
Q ss_pred eEEEEccc----------chhhc-cchHHH-HHHHHHhCC-----------CCCeEEEEeec-CChHHH-HHHHhhCCCC
Q 030094 78 EILVLDEA----------DRLLD-MGFQKQ-ISYIISRLP-----------KLRRTGLFSAT-QTEAVE-ELSKAGLRNP 132 (183)
Q Consensus 78 ~~lVvDEa----------d~ll~-~~~~~~-l~~i~~~l~-----------~~~Q~v~~SAT-~~~~v~-~~~~~~~~~~ 132 (183)
+++|+||| |++++ .||... +..+++.++ +.+|+++|||| .+..+. .+.+.++.
T Consensus 198 ~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~-- 275 (1104)
T 4ddu_A 198 DFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-- 275 (1104)
T ss_dssp SEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC--
T ss_pred CEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee--
Confidence 99999999 45666 788888 889998877 88999999999 555544 23343333
Q ss_pred eEEEEccCCcccccccchhhcccCCCccCceEEEEEec
Q 030094 133 VRVEVRAESKSHHVSASSQQLASSKTPLGLHLEVIWNV 170 (183)
Q Consensus 133 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~i~~~ 170 (183)
+.+... ...+.++.|.++.++
T Consensus 276 --i~v~~~---------------~~~~~~i~~~~~~~~ 296 (1104)
T 4ddu_A 276 --FTVGRL---------------VSVARNITHVRISSR 296 (1104)
T ss_dssp --CCCCBC---------------CCCCCCEEEEEESCC
T ss_pred --EEeccC---------------CCCcCCceeEEEecC
Confidence 333333 556788888887774
No 33
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.77 E-value=3.7e-19 Score=157.74 Aligned_cols=102 Identities=20% Similarity=0.257 Sum_probs=73.5
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHH-HHHHHhcC-----CcCC
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMD-----VLDF 74 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l-~~~l~~~~-----~~~l 74 (183)
+|+|++||||||.|+++.+..+.+++ ++++.+++||.+...+ .+ ..+|||+||||++| .++++.+- .+.+
T Consensus 117 ~vlVltPTreLA~Q~~e~~~~l~~~l-gl~v~~i~GG~~~~~r--~~-~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~ 192 (853)
T 2fsf_A 117 GVHVVTVNDYLAQRDAENNRPLFEFL-GLTVGINLPGMPAPAK--RE-AYAADITYGTNNEYGFDYLRDNMAFSPEERVQ 192 (853)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHHHHT-TCCEEECCTTCCHHHH--HH-HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCC
T ss_pred cEEEEcCCHHHHHHHHHHHHHHHHhc-CCeEEEEeCCCCHHHH--HH-hcCCCEEEECCchhhHHHHHhhhhccHhHhcc
Confidence 57999999999999999999999998 8999999999876433 33 23799999999999 78887521 3668
Q ss_pred CCceEEEEcccchhh-cc---------------chHHHHHHHHHhCCC
Q 030094 75 RNLEILVLDEADRLL-DM---------------GFQKQISYIISRLPK 106 (183)
Q Consensus 75 ~~l~~lVvDEad~ll-~~---------------~~~~~l~~i~~~l~~ 106 (183)
++++++|+||||.|| +. +|...+..|+..+++
T Consensus 193 ~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~ 240 (853)
T 2fsf_A 193 RKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIR 240 (853)
T ss_dssp CSCCEEEESCHHHHTTTTTTCEEEEEEC--------------------
T ss_pred cCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchh
Confidence 999999999999999 43 367889999998874
No 34
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.76 E-value=1.6e-19 Score=165.86 Aligned_cols=141 Identities=15% Similarity=0.184 Sum_probs=110.8
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCc----eEEEEEcCcchHHHH---HHHHhcCCcEEEeCcHHHHHHHHhcCCcC
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDV----KSVLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLD 73 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~----~~~~~~g~~~~~~~~---~~l~~~~~~IiV~TP~~l~~~l~~~~~~~ 73 (183)
.+||++|||+||.|+++.+++++... ++ ++..++|+.+..++. ..+ .. ++|+||||++|.+++.+
T Consensus 101 ~~lil~PtreLa~Q~~~~l~~l~~~~-~i~~~~~v~~~~Gg~~~~~~~~~~~~l-~~-~~IlV~TP~~L~~~l~~----- 172 (1054)
T 1gku_B 101 RCYVIFPTSLLVIQAAETIRKYAEKA-GVGTENLIGYYHGRIPKREKENFMQNL-RN-FKIVITTTQFLSKHYRE----- 172 (1054)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHHTTT-CCSGGGSEEECCSSCCSHHHHHHHHSG-GG-CSEEEEEHHHHHHCSTT-----
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhc-CCCccceEEEEeCCCChhhHHHHHhhc-cC-CCEEEEcHHHHHHHHHH-----
Confidence 48999999999999999999998876 67 899999998876643 333 33 99999999999987754
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCC-----------CCCeEEEEeecCChHHHHHHHhhCCCCeEEEEccCCc
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLP-----------KLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESK 142 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~-----------~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~ 142 (183)
+++++++|+||||.+++ +..++..++..++ ..+|+++||||+++. ..++..++.++..+.+...
T Consensus 173 L~~l~~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~-- 247 (1054)
T 1gku_B 173 LGHFDFIFVDDVDAILK--ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSS-- 247 (1054)
T ss_dssp SCCCSEEEESCHHHHHT--STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCC--
T ss_pred hccCCEEEEeChhhhhh--ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCc--
Confidence 66899999999999987 5678888887773 568999999999998 6566666655555544443
Q ss_pred ccccccchhhcccCCCccCceEEEE
Q 030094 143 SHHVSASSQQLASSKTPLGLHLEVI 167 (183)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~l~q~~i 167 (183)
.....++.|+++
T Consensus 248 -------------~~~~~~i~~~~~ 259 (1054)
T 1gku_B 248 -------------RITVRNVEDVAV 259 (1054)
T ss_dssp -------------EECCCCEEEEEE
T ss_pred -------------ccCcCCceEEEe
Confidence 344556666665
No 35
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.7e-17 Score=152.91 Aligned_cols=125 Identities=22% Similarity=0.191 Sum_probs=107.3
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
++|++|||+||.|+++.+.++.. .+..+.|+... ..+++|+|+||++|..++.+ +...+++++++|
T Consensus 230 vlvl~PtraLa~Q~~~~l~~~~~-----~VglltGd~~~--------~~~~~IlV~Tpe~L~~~L~~-~~~~l~~l~lVV 295 (1108)
T 3l9o_A 230 VIYTSPIKALSNQKYRELLAEFG-----DVGLMTGDITI--------NPDAGCLVMTTEILRSMLYR-GSEVMREVAWVI 295 (1108)
T ss_dssp EEEEESSHHHHHHHHHHHHHHTS-----SEEEECSSCBC--------CCSCSEEEEEHHHHHHHHHH-CSSHHHHEEEEE
T ss_pred EEEEcCcHHHHHHHHHHHHHHhC-----CccEEeCcccc--------CCCCCEEEeChHHHHHHHHc-CccccccCCEEE
Confidence 79999999999999999998753 56778887763 35789999999999999988 777789999999
Q ss_pred EcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChH--HHHHHHhhCCCCeEEEEccC
Q 030094 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA--VEELSKAGLRNPVRVEVRAE 140 (183)
Q Consensus 82 vDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~--v~~~~~~~~~~~~~i~~~~~ 140 (183)
+||||.+.+.++...+..++..+++..|++++|||+++. +..+......+|..+.....
T Consensus 296 IDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~ 356 (1108)
T 3l9o_A 296 FDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF 356 (1108)
T ss_dssp EETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECC
T ss_pred EhhhhhccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC
Confidence 999999999999999999999999999999999999875 44666777778877765443
No 36
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.74 E-value=4.9e-18 Score=150.81 Aligned_cols=116 Identities=18% Similarity=0.218 Sum_probs=97.7
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHH-HHHHHhc-----CCcCC
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERM-----DVLDF 74 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l-~~~l~~~-----~~~~l 74 (183)
+|+||+||||||.|+++.+..+.+++ ++++.+++||.+..++... .+|||+||||++| .+++..+ +.+.+
T Consensus 126 ~vlVltptreLA~qd~e~~~~l~~~l-gl~v~~i~gg~~~~~r~~~---~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~l 201 (844)
T 1tf5_A 126 GVHVVTVNEYLASRDAEQMGKIFEFL-GLTVGLNLNSMSKDEKREA---YAADITYSTNNELGFDYLRDNMVLYKEQMVQ 201 (844)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHT-TCCEEECCTTSCHHHHHHH---HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCC
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHh---cCCCEEEECchhhhHHHHHHhhhcchhhhcc
Confidence 48999999999999999999999988 9999999999876544322 4799999999999 6666541 24678
Q ss_pred CCceEEEEcccchhh-cc---------------chHHHHHHHHHhCC---------CCCeEE-----------------E
Q 030094 75 RNLEILVLDEADRLL-DM---------------GFQKQISYIISRLP---------KLRRTG-----------------L 112 (183)
Q Consensus 75 ~~l~~lVvDEad~ll-~~---------------~~~~~l~~i~~~l~---------~~~Q~v-----------------~ 112 (183)
+.++++|+||||.|| +. +|...+..|++.++ +.+|+. +
T Consensus 202 r~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~L 281 (844)
T 1tf5_A 202 RPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNL 281 (844)
T ss_dssp CCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCT
T ss_pred cCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCcccc
Confidence 999999999999998 55 37899999999997 478988 9
Q ss_pred EeecCChH
Q 030094 113 FSATQTEA 120 (183)
Q Consensus 113 ~SAT~~~~ 120 (183)
||||.+.-
T Consensus 282 fsat~~~~ 289 (844)
T 1tf5_A 282 FDVKHVAL 289 (844)
T ss_dssp TSGGGHHH
T ss_pred CCCccchh
Confidence 99998743
No 37
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.71 E-value=3.9e-17 Score=145.33 Aligned_cols=116 Identities=16% Similarity=0.240 Sum_probs=99.0
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHH-HHHHHhc-----CCcCC
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERM-----DVLDF 74 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l-~~~l~~~-----~~~~l 74 (183)
+|+||+||++||.|+++.+..+.+++ ++++.+++||.+...+. . ..+|||++|||++| .+++..+ +.+.+
T Consensus 154 ~v~VvTpTreLA~Qdae~m~~l~~~l-GLsv~~i~gg~~~~~r~--~-~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~l 229 (922)
T 1nkt_A 154 GVHIVTVNDYLAKRDSEWMGRVHRFL-GLQVGVILATMTPDERR--V-AYNADITYGTNNEFGFDYLRDNMAHSLDDLVQ 229 (922)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHT-TCCEEECCTTCCHHHHH--H-HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCC
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHH--H-hcCCCEEEECchHhhHHHHHhhhhccHhhhcc
Confidence 48999999999999999999999998 99999999998754333 2 23699999999999 7777652 24678
Q ss_pred CCceEEEEcccchhh-c---------------cchHHHHHHHHHhCC---------CCCeEE-----------------E
Q 030094 75 RNLEILVLDEADRLL-D---------------MGFQKQISYIISRLP---------KLRRTG-----------------L 112 (183)
Q Consensus 75 ~~l~~lVvDEad~ll-~---------------~~~~~~l~~i~~~l~---------~~~Q~v-----------------~ 112 (183)
+.+.++|+||||.|| + .+|...+..|+..++ +.+|+. +
T Consensus 230 r~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~L 309 (922)
T 1nkt_A 230 RGHHYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNL 309 (922)
T ss_dssp CCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSST
T ss_pred CCCCEEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccc
Confidence 999999999999999 3 358899999999998 789999 9
Q ss_pred EeecCChH
Q 030094 113 FSATQTEA 120 (183)
Q Consensus 113 ~SAT~~~~ 120 (183)
||||.++-
T Consensus 310 fsat~~~l 317 (922)
T 1nkt_A 310 YEAANSPL 317 (922)
T ss_dssp TCSTTCCH
T ss_pred cCCcchhH
Confidence 99998753
No 38
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.71 E-value=9.7e-17 Score=124.20 Aligned_cols=119 Identities=16% Similarity=0.178 Sum_probs=88.4
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
+++++|||++|.|+.+.+........+..+......... ....+++|+||||+++.+++.. ++++++++|
T Consensus 112 ~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~------~~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lV 181 (235)
T 3llm_A 112 IVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESI------LPRPHASIMFCTVGVLLRKLEA----GIRGISHVI 181 (235)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEE------CCCSSSEEEEEEHHHHHHHHHH----CCTTCCEEE
T ss_pred EEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhc------cCCCCCeEEEECHHHHHHHHHh----hhcCCcEEE
Confidence 688999999999998888766443223444332222111 1124689999999999999976 389999999
Q ss_pred Ecccchh-hccchH-HHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCe
Q 030094 82 LDEADRL-LDMGFQ-KQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPV 133 (183)
Q Consensus 82 vDEad~l-l~~~~~-~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~ 133 (183)
+||||.+ ++.+|. ..++.+.... ++.|+++||||++.+. +.+.+..+|+
T Consensus 182 lDEah~~~~~~~~~~~~l~~i~~~~-~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 182 VDEIHERDINTDFLLVVLRDVVQAY-PEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp ECCTTSCCHHHHHHHHHHHHHHHHC-TTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred EECCccCCcchHHHHHHHHHHHhhC-CCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 9999996 777776 5677777776 4799999999999886 6666666665
No 39
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.70 E-value=4.3e-16 Score=142.46 Aligned_cols=124 Identities=22% Similarity=0.204 Sum_probs=103.2
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
+||++||++|+.|+++.+.++.. ++..++|+.... .+++|+|+||++|..++.+ +...+++++++|
T Consensus 132 vL~l~PtkaLa~Q~~~~l~~~~~-----~vglltGd~~~~--------~~~~IvV~Tpe~L~~~L~~-~~~~l~~l~lVV 197 (1010)
T 2xgj_A 132 VIYTSPIKALSNQKYRELLAEFG-----DVGLMTGDITIN--------PDAGCLVMTTEILRSMLYR-GSEVMREVAWVI 197 (1010)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHS-----CEEEECSSCEEC--------TTCSEEEEEHHHHHHHHHH-TCTTGGGEEEEE
T ss_pred EEEECChHHHHHHHHHHHHHHhC-----CEEEEeCCCccC--------CCCCEEEEcHHHHHHHHHc-CcchhhcCCEEE
Confidence 79999999999999999998753 577788877642 3689999999999999988 777889999999
Q ss_pred EcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHh---hCCCCeEEEEccC
Q 030094 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA---GLRNPVRVEVRAE 140 (183)
Q Consensus 82 vDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~---~~~~~~~i~~~~~ 140 (183)
+||||.+.+.++...++.++..+++..|++++|||+++. .+++.+ ...+|..+...+.
T Consensus 198 iDEaH~l~d~~rg~~~e~il~~l~~~~~il~LSATi~n~-~e~a~~l~~~~~~~~~vi~~~~ 258 (1010)
T 2xgj_A 198 FDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNA-MEFAEWICKIHSQPCHIVYTNF 258 (1010)
T ss_dssp EETGGGGGCTTTHHHHHHHHHHSCTTCEEEEEECCCTTH-HHHHHHHHHHHTSCEEEEEECC
T ss_pred EechhhhcccchhHHHHHHHHhcCCCCeEEEEcCCCCCH-HHHHHHHHhhcCCCeEEEecCC
Confidence 999999998888888999999999999999999999876 334443 3456776655433
No 40
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.69 E-value=1.7e-16 Score=135.63 Aligned_cols=115 Identities=13% Similarity=0.157 Sum_probs=89.0
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCc-CCCCceE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVL-DFRNLEI 79 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~-~l~~l~~ 79 (183)
.+||++||++|+.|+++.++++.... ++++..+.|+.....+...+. .+++|+|+||++|.+++.. +.+ .++++++
T Consensus 57 ~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~~ 133 (556)
T 4a2p_A 57 KVVFLATKVPVYEQQKNVFKHHFERQ-GYSVQGISGENFSNVSVEKVI-EDSDIIVVTPQILVNSFED-GTLTSLSIFTL 133 (556)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGGG-TCCEEECCCC-----CHHHHH-HHCSEEEECHHHHHHHHHS-SSCCCSTTCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhccc-CceEEEEeCCCCcchhHHHhh-CCCCEEEECHHHHHHHHHh-CcccccccCCE
Confidence 37999999999999999999998776 789999999887766655553 4699999999999999987 666 7999999
Q ss_pred EEEcccchhhccchHHHH-HHHHHh-C---CCCCeEEEEeecCC
Q 030094 80 LVLDEADRLLDMGFQKQI-SYIISR-L---PKLRRTGLFSATQT 118 (183)
Q Consensus 80 lVvDEad~ll~~~~~~~l-~~i~~~-l---~~~~Q~v~~SAT~~ 118 (183)
+|+||||++.+.+....+ ...+.. + ++..|++++|||++
T Consensus 134 vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~ 177 (556)
T 4a2p_A 134 MIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVG 177 (556)
T ss_dssp EEEETGGGCSTTSHHHHHHHHHHHHHHCC---CCEEEEEESCCC
T ss_pred EEEECCcccCCcchHHHHHHHHHHhhhcccCCCCeEEEEeCCcc
Confidence 999999999877644333 233322 1 45689999999995
No 41
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.68 E-value=1.5e-16 Score=135.69 Aligned_cols=116 Identities=13% Similarity=0.175 Sum_probs=94.2
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCc-CCCCceE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVL-DFRNLEI 79 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~-~l~~l~~ 79 (183)
.+||++||++|+.|+++.+++++... ++++..+.|+.....+...+. .+++|+|+||+++..++.. +.+ .+.++++
T Consensus 54 ~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~~ 130 (555)
T 3tbk_A 54 KVVFFANQIPVYEQQATVFSRYFERL-GYNIASISGATSDSVSVQHII-EDNDIIILTPQILVNNLNN-GAIPSLSVFTL 130 (555)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHTT-TCCEEEECTTTGGGSCHHHHH-HHCSEEEECHHHHHHHHHT-SSSCCGGGCSE
T ss_pred EEEEEeCCHHHHHHHHHHHHHHhccC-CcEEEEEcCCCcchhhHHHHh-cCCCEEEECHHHHHHHHhc-CcccccccCCE
Confidence 37999999999999999999998876 899999999987766655553 4699999999999999987 666 7899999
Q ss_pred EEEcccchhhccc-hHHHHHHHHHhC-----CCCCeEEEEeecCCh
Q 030094 80 LVLDEADRLLDMG-FQKQISYIISRL-----PKLRRTGLFSATQTE 119 (183)
Q Consensus 80 lVvDEad~ll~~~-~~~~l~~i~~~l-----~~~~Q~v~~SAT~~~ 119 (183)
+|+||||++.+.+ +...+...+... ++..|++++|||++.
T Consensus 131 vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 131 MIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGV 176 (555)
T ss_dssp EEETTGGGCSTTCHHHHHHHHHHHHHTSSCCSCCCEEEEEESCCCC
T ss_pred EEEECccccCCcchHHHHHHHHHHhhhccccCCCCeEEEEecCccc
Confidence 9999999998764 333333443332 256799999999954
No 42
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.64 E-value=5.3e-16 Score=141.76 Aligned_cols=115 Identities=26% Similarity=0.266 Sum_probs=98.8
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
+||++||++|+.|+++.+.++. +++++..++|+... ...++|+|+||++|..++.. ....+++++++|
T Consensus 85 vlvl~PtraLa~Q~~~~l~~~~---~~~~v~~l~G~~~~--------~~~~~IlV~Tpe~L~~~l~~-~~~~l~~l~lvV 152 (997)
T 4a4z_A 85 TIYTSPIKALSNQKFRDFKETF---DDVNIGLITGDVQI--------NPDANCLIMTTEILRSMLYR-GADLIRDVEFVI 152 (997)
T ss_dssp EEEEESCGGGHHHHHHHHHTTC-----CCEEEECSSCEE--------CTTSSEEEEEHHHHHHHHHH-TCSGGGGEEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHc---CCCeEEEEeCCCcc--------CCCCCEEEECHHHHHHHHHh-CchhhcCCCEEE
Confidence 7999999999999999888864 36788889988763 34689999999999999987 677789999999
Q ss_pred EcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhC
Q 030094 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGL 129 (183)
Q Consensus 82 vDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~ 129 (183)
+||||.+.+.++...+..++..+++..|++++|||+++.. +++.++.
T Consensus 153 iDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~n~~-ef~~~l~ 199 (997)
T 4a4z_A 153 FDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTY-EFANWIG 199 (997)
T ss_dssp ECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEECCCTTHH-HHHHHHH
T ss_pred EECcccccccchHHHHHHHHHhcccCCCEEEEcCCCCChH-HHHHHHh
Confidence 9999999998888889999999999999999999998763 6666553
No 43
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.64 E-value=2.1e-15 Score=135.06 Aligned_cols=115 Identities=13% Similarity=0.144 Sum_probs=90.1
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCc-CCCCceE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVL-DFRNLEI 79 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~-~l~~l~~ 79 (183)
.+||++||++|+.|+++.+++++... ++++..++|+.....+...+. .+++|+|+||++|.+++.. +.+ .++++++
T Consensus 298 ~~Lvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~-~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~~~~ 374 (797)
T 4a2q_A 298 KVVFLATKVPVYEQQKNVFKHHFERQ-GYSVQGISGENFSNVSVEKVI-EDSDIIVVTPQILVNSFED-GTLTSLSIFTL 374 (797)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGGG-TCCEEEECCC-----CHHHHH-HTCSEEEECHHHHHHHHHS-SSCCCGGGCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHhcccC-CceEEEEeCCcchhhhHHHhh-CCCCEEEEchHHHHHHHHh-ccccccccCCE
Confidence 37999999999999999999998776 889999999987776665553 5799999999999999987 666 7899999
Q ss_pred EEEcccchhhccch-HHHHHHHHHhC----CCCCeEEEEeecCC
Q 030094 80 LVLDEADRLLDMGF-QKQISYIISRL----PKLRRTGLFSATQT 118 (183)
Q Consensus 80 lVvDEad~ll~~~~-~~~l~~i~~~l----~~~~Q~v~~SAT~~ 118 (183)
+|+||||++.+.+. ...+..+.... .+.+|++++|||++
T Consensus 375 iViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 375 MIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVG 418 (797)
T ss_dssp EEETTGGGCSTTSHHHHHHHHHHHHHHTTCCCCCEEEEEESCCC
T ss_pred EEEECccccCCCccHHHHHHHHHHHhhccCCCCCeEEEEcCCcc
Confidence 99999999987643 33333333321 45689999999995
No 44
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.63 E-value=3.9e-16 Score=118.09 Aligned_cols=113 Identities=14% Similarity=0.219 Sum_probs=76.9
Q ss_pred CEEEEeCcHHHHHH-HHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcC-----CcCC
Q 030094 1 MGMIISPTRELSSQ-IYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMD-----VLDF 74 (183)
Q Consensus 1 ~alIl~PtreLa~Q-i~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~-----~~~l 74 (183)
.+||++||++|+.| +.+.+.++... ++++..+.|+.....+...+. .+++|+|+||+++...+.... .+.+
T Consensus 84 ~~lil~p~~~L~~q~~~~~~~~~~~~--~~~v~~~~g~~~~~~~~~~~~-~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~ 160 (216)
T 3b6e_A 84 KVIVLVNKVLLVEQLFRKEFQPFLKK--WYRVIGLSGDTQLKISFPEVV-KSCDIIISTAQILENSLLNLENGEDAGVQL 160 (216)
T ss_dssp CEEEEESSHHHHHHHHHHTHHHHHTT--TSCEEECCC---CCCCHHHHH-HHCSEEEEEHHHHHHHHHC-------CCCG
T ss_pred cEEEEECHHHHHHHHHHHHHHHHhcc--CceEEEEeCCcccchhHHhhc-cCCCEEEECHHHHHHHHhccCcccccccch
Confidence 37999999999999 78888888654 678888888776554444443 369999999999999987622 1567
Q ss_pred CCceEEEEcccchhhccchHHHHH-HHHHhC-------------CCCCeEEEEeec
Q 030094 75 RNLEILVLDEADRLLDMGFQKQIS-YIISRL-------------PKLRRTGLFSAT 116 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~-~i~~~l-------------~~~~Q~v~~SAT 116 (183)
.+++++|+||||.+.+.++...+. .++... .+..|++++|||
T Consensus 161 ~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 161 SDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp GGCSEEEETTC-------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred hcccEEEEECchhhccCCcHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 899999999999998765555443 332221 157899999998
No 45
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.63 E-value=2.8e-15 Score=131.95 Aligned_cols=114 Identities=12% Similarity=0.174 Sum_probs=91.3
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCc-CCCCceEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVL-DFRNLEIL 80 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~-~l~~l~~l 80 (183)
+||++||++|+.|+++.+++++... ++++..+.|+.....+...+. .+++|+|+||++|.+.+.. +.+ .+++++++
T Consensus 64 ~lvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~-~~~~Iiv~Tp~~L~~~l~~-~~~~~l~~~~~v 140 (696)
T 2ykg_A 64 VVFFANQIPVYEQNKSVFSKYFERH-GYRVTGISGATAENVPVEQIV-ENNDIIILTPQILVNNLKK-GTIPSLSIFTLM 140 (696)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECSSSCSSSCHHHHH-HTCSEEEECHHHHHHHHHT-TSSCCGGGCSEE
T ss_pred EEEEECCHHHHHHHHHHHHHHhccC-CceEEEEeCCccccccHHHhc-cCCCEEEECHHHHHHHHhc-CcccccccccEE
Confidence 7999999999999999999998665 789999999887655555553 4799999999999999987 666 78999999
Q ss_pred EEcccchhhccc-hHHHHHHHHHh-----CCCCCeEEEEeecCC
Q 030094 81 VLDEADRLLDMG-FQKQISYIISR-----LPKLRRTGLFSATQT 118 (183)
Q Consensus 81 VvDEad~ll~~~-~~~~l~~i~~~-----l~~~~Q~v~~SAT~~ 118 (183)
|+||||++.+.. +...+...+.. .++..|++++|||+.
T Consensus 141 ViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 141 IFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp EEETGGGCSTTCHHHHHHHHHHHHHHTTCCSCCCEEEEEESCCC
T ss_pred EEeCCCcccCcccHHHHHHHHHHHhhcccCCCCCeEEEEeCccc
Confidence 999999987553 33333333332 246789999999997
No 46
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.63 E-value=3e-15 Score=130.21 Aligned_cols=127 Identities=17% Similarity=0.148 Sum_probs=95.5
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHH-----HhcCCcEEEeCcHHHH---HHHHh-cCCc
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKI-----EEEGANLLIGTPGRLY---DIMER-MDVL 72 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l-----~~~~~~IiV~TP~~l~---~~l~~-~~~~ 72 (183)
+||++|+++|+.|+.+.+.++ ++++..+.|+....+....+ ...+++|+|+||++|. .++.. .+..
T Consensus 87 ~lVisP~~~L~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~ 161 (591)
T 2v1x_A 87 TLVICPLISLMEDQLMVLKQL-----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAY 161 (591)
T ss_dssp EEEECSCHHHHHHHHHHHHHH-----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHH
T ss_pred EEEEeCHHHHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhh
Confidence 799999999999999998886 57788888887765554332 2357999999999874 22221 0234
Q ss_pred CCCCceEEEEcccchhhccc--hHHHHHH--HHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCe
Q 030094 73 DFRNLEILVLDEADRLLDMG--FQKQISY--IISRLPKLRRTGLFSATQTEAVEELSKAGLRNPV 133 (183)
Q Consensus 73 ~l~~l~~lVvDEad~ll~~~--~~~~l~~--i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~ 133 (183)
.+.++.++|+||||.+.++| |.+.+.. ++....+..|++++|||+++.+...+..++..+.
T Consensus 162 ~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~ 226 (591)
T 2v1x_A 162 EARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEK 226 (591)
T ss_dssp HTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCS
T ss_pred hccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCC
Confidence 57889999999999998876 6555543 3333345799999999999999888888777554
No 47
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.62 E-value=5.2e-15 Score=123.23 Aligned_cols=123 Identities=20% Similarity=0.209 Sum_probs=97.8
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
+||+|||++|+.|+.+.+.++.+ .+..++..+.|+.......... .+++|+|+||+.+...+.. +.+.+.++.++|
T Consensus 55 ~liv~P~~~L~~q~~~~~~~~~~-~~~~~v~~~~g~~~~~~~~~~~--~~~~ivv~T~~~l~~~~~~-~~~~~~~~~~vI 130 (494)
T 1wp9_A 55 VLMLAPTKPLVLQHAESFRRLFN-LPPEKIVALTGEKSPEERSKAW--ARAKVIVATPQTIENDLLA-GRISLEDVSLIV 130 (494)
T ss_dssp EEEECSSHHHHHHHHHHHHHHBC-SCGGGEEEECSCSCHHHHHHHH--HHCSEEEECHHHHHHHHHT-TSCCTTSCSEEE
T ss_pred EEEEECCHHHHHHHHHHHHHHhC-cchhheEEeeCCcchhhhhhhc--cCCCEEEecHHHHHHHHhc-CCcchhhceEEE
Confidence 79999999999999999999863 2466888888888766544433 3689999999999999987 778899999999
Q ss_pred EcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChH---HHHHHHhh
Q 030094 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA---VEELSKAG 128 (183)
Q Consensus 82 vDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~---v~~~~~~~ 128 (183)
+||||.+.+......+...+....+..+++++|||+... +..+....
T Consensus 131 iDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~~~~~~~~~l~~~l 180 (494)
T 1wp9_A 131 FDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNL 180 (494)
T ss_dssp EETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSCSSHHHHHHHHHHT
T ss_pred EECCcccCCCCcHHHHHHHHHhcCCCCeEEEEecCCCCCcHHHHHHHHhc
Confidence 999999986655555666666666789999999999744 44444443
No 48
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.61 E-value=2e-15 Score=133.82 Aligned_cols=119 Identities=17% Similarity=0.224 Sum_probs=99.7
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
+++++|+|+||.|+++.++++.. . ++++...+|+....... ..+++|+|+||+++..++.+ +...+++++++|
T Consensus 71 ~l~i~P~raLa~q~~~~~~~l~~-~-g~~v~~~~G~~~~~~~~----~~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vI 143 (720)
T 2zj8_A 71 AVYIVPLKALAEEKFQEFQDWEK-I-GLRVAMATGDYDSKDEW----LGKYDIIIATAEKFDSLLRH-GSSWIKDVKILV 143 (720)
T ss_dssp EEEECSSGGGHHHHHHHTGGGGG-G-TCCEEEECSCSSCCCGG----GGGCSEEEECHHHHHHHHHH-TCTTGGGEEEEE
T ss_pred EEEEcCcHHHHHHHHHHHHHHHh-c-CCEEEEecCCCCccccc----cCCCCEEEECHHHHHHHHHc-ChhhhhcCCEEE
Confidence 79999999999999999977654 3 78899999876543321 24789999999999999987 666689999999
Q ss_pred EcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhh
Q 030094 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAG 128 (183)
Q Consensus 82 vDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~ 128 (183)
+||||.+.+.++...+..++..+++..|++++|||+++. ..+++++
T Consensus 144 iDE~H~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~-~~~~~~l 189 (720)
T 2zj8_A 144 ADEIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIGNP-EELAEWL 189 (720)
T ss_dssp EETGGGGGCTTTHHHHHHHHHHHBTTBEEEEEECCCSCH-HHHHHHT
T ss_pred EECCcccCCCcccHHHHHHHHHhhcCCeEEEEcCCcCCH-HHHHHHh
Confidence 999999988788999999999887789999999999864 6666654
No 49
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.60 E-value=3e-15 Score=132.36 Aligned_cols=120 Identities=16% Similarity=0.232 Sum_probs=97.3
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.+++++|+|+||.|+++.++++. .. ++++...+|+....++. ..+++|+|+||+++..++.+ +...+++++++
T Consensus 70 ~~l~i~P~r~La~q~~~~~~~~~-~~-g~~v~~~~G~~~~~~~~----~~~~~Iiv~Tpe~l~~~l~~-~~~~l~~~~~v 142 (702)
T 2p6r_A 70 KSLYVVPLRALAGEKYESFKKWE-KI-GLRIGISTGDYESRDEH----LGDCDIIVTTSEKADSLIRN-RASWIKAVSCL 142 (702)
T ss_dssp CEEEEESSHHHHHHHHHHHTTTT-TT-TCCEEEECSSCBCCSSC----STTCSEEEEEHHHHHHHHHT-TCSGGGGCCEE
T ss_pred cEEEEeCcHHHHHHHHHHHHHHH-hc-CCEEEEEeCCCCcchhh----ccCCCEEEECHHHHHHHHHc-ChhHHhhcCEE
Confidence 37999999999999999997664 33 78999999977654321 23799999999999999987 55568899999
Q ss_pred EEcccchhhccchHHHHHHHHHhC---CCCCeEEEEeecCChHHHHHHHhh
Q 030094 81 VLDEADRLLDMGFQKQISYIISRL---PKLRRTGLFSATQTEAVEELSKAG 128 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l---~~~~Q~v~~SAT~~~~v~~~~~~~ 128 (183)
|+||||.+.+.++...+..++..+ ++..|++++|||+++ ...+++++
T Consensus 143 IiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~l 192 (702)
T 2p6r_A 143 VVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEWL 192 (702)
T ss_dssp EETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHHT
T ss_pred EEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHHh
Confidence 999999998877777777776665 578999999999996 46777654
No 50
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.59 E-value=8.7e-15 Score=139.52 Aligned_cols=125 Identities=19% Similarity=0.228 Sum_probs=92.9
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhc-CCcCCCCceEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM-DVLDFRNLEIL 80 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~-~~~~l~~l~~l 80 (183)
||+++|||+||.|+++.+++..+...++++..++|+...+.. .. .+++|+|+||+++..++++. ..-.+++++++
T Consensus 975 avyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~--~~--~~~~IiV~TPEkld~llr~~~~~~~l~~v~lv 1050 (1724)
T 4f92_B 975 CVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK--LL--GKGNIIISTPEKWDILSRRWKQRKNVQNINLF 1050 (1724)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH--HH--HHCSEEEECHHHHHHHHTTTTTCHHHHSCSEE
T ss_pred EEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchh--hc--CCCCEEEECHHHHHHHHhCcccccccceeeEE
Confidence 799999999999999998764433238899998887654332 22 35899999999998887652 22247899999
Q ss_pred EEcccchhhccchHHHHHHHH-------HhCCCCCeEEEEeecCChHHHHHHHhhCCCC
Q 030094 81 VLDEADRLLDMGFQKQISYII-------SRLPKLRRTGLFSATQTEAVEELSKAGLRNP 132 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~-------~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~ 132 (183)
|+||+|.+.+. .+..++.++ ...++..|++++|||+++. ++++++.-.++
T Consensus 1051 ViDE~H~l~d~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~-~dla~WL~~~~ 1107 (1724)
T 4f92_B 1051 VVDEVHLIGGE-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSNA-KDVAHWLGCSA 1107 (1724)
T ss_dssp EECCGGGGGST-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HHHHHHHTCCS
T ss_pred EeechhhcCCC-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HHHHHHhCCCC
Confidence 99999988653 344444333 4457789999999999875 78888765444
No 51
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.58 E-value=8.6e-15 Score=133.22 Aligned_cols=114 Identities=13% Similarity=0.175 Sum_probs=89.2
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCc-CCCCceEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVL-DFRNLEIL 80 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~-~l~~l~~l 80 (183)
+||++||++|+.|+++.++++.... ++++..++|+.....+...+. .+++|+|+||++|.+++.. +.+ .+++++++
T Consensus 299 vLvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~G~~~~~~~~~~~~-~~~~IvI~Tp~~L~~~l~~-~~~~~l~~~~li 375 (936)
T 4a2w_A 299 VVFLATKVPVYEQQKNVFKHHFERQ-GYSVQGISGENFSNVSVEKVI-EDSDIIVVTPQILVNSFED-GTLTSLSIFTLM 375 (936)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHTT-TCCEEEECCC-----CCHHHH-HHCSEEEECHHHHHHHHHS-SSCCCGGGCSEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHhccc-CceEEEEECCcchhhHHHHhc-cCCCEEEecHHHHHHHHHc-CccccccCCCEE
Confidence 7999999999999999999998766 899999999987666555553 4699999999999999987 666 78999999
Q ss_pred EEcccchhhccc-hHHHHHHHHHhC----CCCCeEEEEeecCC
Q 030094 81 VLDEADRLLDMG-FQKQISYIISRL----PKLRRTGLFSATQT 118 (183)
Q Consensus 81 VvDEad~ll~~~-~~~~l~~i~~~l----~~~~Q~v~~SAT~~ 118 (183)
|+||||++.+.+ +...+..+.... ++..|++++|||+.
T Consensus 376 ViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 376 IFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVG 418 (936)
T ss_dssp EEETGGGCSTTCHHHHHHHHHHHHHHTTCSCCCEEEEEESCCC
T ss_pred EEECccccCCCccHHHHHHHHHHHhhccCCCcCeEEEecCCcc
Confidence 999999998654 333333443331 45689999999995
No 52
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.58 E-value=6e-15 Score=130.55 Aligned_cols=119 Identities=18% Similarity=0.194 Sum_probs=98.2
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
+++++|+|+||.|+++.++++.. . ++++...+|+....++ .+ .+++|+|+||+++..++.+ +...+++++++|
T Consensus 78 il~i~P~r~La~q~~~~~~~~~~-~-g~~v~~~~G~~~~~~~--~~--~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vI 150 (715)
T 2va8_A 78 AIYVTPLRALTNEKYLTFKDWEL-I-GFKVAMTSGDYDTDDA--WL--KNYDIIITTYEKLDSLWRH-RPEWLNEVNYFV 150 (715)
T ss_dssp EEEECSCHHHHHHHHHHHGGGGG-G-TCCEEECCSCSSSCCG--GG--GGCSEEEECHHHHHHHHHH-CCGGGGGEEEEE
T ss_pred EEEEeCcHHHHHHHHHHHHHhhc-C-CCEEEEEeCCCCCchh--hc--CCCCEEEEcHHHHHHHHhC-ChhHhhccCEEE
Confidence 78999999999999999976643 3 7888888887665433 12 3789999999999999988 666689999999
Q ss_pred EcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhC
Q 030094 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGL 129 (183)
Q Consensus 82 vDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~ 129 (183)
+||||.+.+.++...++.++.+++ ..|++++|||+++. ..+++++.
T Consensus 151 iDE~H~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n~-~~~~~~l~ 196 (715)
T 2va8_A 151 LDELHYLNDPERGPVVESVTIRAK-RRNLLALSATISNY-KQIAKWLG 196 (715)
T ss_dssp ECSGGGGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTTH-HHHHHHHT
T ss_pred EechhhcCCcccchHHHHHHHhcc-cCcEEEEcCCCCCH-HHHHHHhC
Confidence 999999887778888888888886 89999999999864 66666543
No 53
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.57 E-value=1e-14 Score=127.69 Aligned_cols=103 Identities=14% Similarity=0.110 Sum_probs=85.0
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
++||++||||||.|+++.+.+.. +.++...+|+.. ...+++|+|+||++| +.. ..+++++++++
T Consensus 259 ~vLVl~PTReLA~Qia~~l~~~~----g~~vg~~vG~~~--------~~~~~~IlV~TPGrL---l~~-~~l~l~~l~~l 322 (666)
T 3o8b_A 259 KVLVLNPSVAATLGFGAYMSKAH----GIDPNIRTGVRT--------ITTGAPVTYSTYGKF---LAD-GGCSGGAYDII 322 (666)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHH----SCCCEEECSSCE--------ECCCCSEEEEEHHHH---HHT-TSCCTTSCSEE
T ss_pred eEEEEcchHHHHHHHHHHHHHHh----CCCeeEEECcEe--------ccCCCCEEEECcHHH---HhC-CCcccCcccEE
Confidence 48999999999999998766654 445666777655 246899999999997 455 67889999999
Q ss_pred EEcccchhhccchHHHHHHHHHhCCCCCe--EEEEeecCChH
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPKLRR--TGLFSATQTEA 120 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~~~Q--~v~~SAT~~~~ 120 (183)
|+||| ++++.+|...+..+++.++..+| .+++|||+++.
T Consensus 323 VlDEA-H~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~ 363 (666)
T 3o8b_A 323 ICDEC-HSTDSTTILGIGTVLDQAETAGARLVVLATATPPGS 363 (666)
T ss_dssp EETTT-TCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTC
T ss_pred EEccc-hhcCccHHHHHHHHHHhhhhcCCceEEEECCCCCcc
Confidence 99999 55678899999999999988877 67779999985
No 54
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.55 E-value=1.3e-14 Score=138.21 Aligned_cols=122 Identities=16% Similarity=0.154 Sum_probs=93.1
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCC--cCCCCceE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV--LDFRNLEI 79 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~--~~l~~l~~ 79 (183)
||+++|+|+||.|+++.+++..+.. ++++..++|+.....+. ..+++|+|+||+++..++++ .. -.++++++
T Consensus 137 ~lyiaP~kALa~e~~~~l~~~~~~~-gi~V~~~tGd~~~~~~~----~~~~~IlVtTpEkld~llr~-~~~~~~l~~v~~ 210 (1724)
T 4f92_B 137 IIYIAPMRSLVQEMVGSFGKRLATY-GITVAELTGDHQLCKEE----ISATQIIVCTPEKWDIITRK-GGERTYTQLVRL 210 (1724)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTT-TCCEEECCSSCSSCCTT----GGGCSEEEECHHHHHHHTTS-STTHHHHTTEEE
T ss_pred EEEECCHHHHHHHHHHHHHHHHhhC-CCEEEEEECCCCCCccc----cCCCCEEEECHHHHHHHHcC-CccchhhcCcCE
Confidence 7999999999999999998887776 89999999987654321 24699999999998766654 22 23789999
Q ss_pred EEEcccchhhccchHHHHHHHHH-------hCCCCCeEEEEeecCChHHHHHHHhhCCC
Q 030094 80 LVLDEADRLLDMGFQKQISYIIS-------RLPKLRRTGLFSATQTEAVEELSKAGLRN 131 (183)
Q Consensus 80 lVvDEad~ll~~~~~~~l~~i~~-------~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~ 131 (183)
+|+||+|.+-+ ..+..++.++. ..++..|++++|||+++. ++++++.-.+
T Consensus 211 vIiDEvH~l~d-~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~-~dvA~wL~~~ 267 (1724)
T 4f92_B 211 IILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNY-EDVATFLRVD 267 (1724)
T ss_dssp EEETTGGGGGS-TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTH-HHHHHHTTCC
T ss_pred EEEecchhcCC-ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCH-HHHHHHhCCC
Confidence 99999997643 44555554443 346789999999999864 7777765433
No 55
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.53 E-value=5.3e-14 Score=130.28 Aligned_cols=124 Identities=19% Similarity=0.267 Sum_probs=96.0
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHH---HHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
+++|+|||++||.|+++.+.+..... ++++..+.|.....+. ...+..+.+||+||||+.+ . +.+.++++
T Consensus 654 ~vlvlvPt~~La~Q~~~~~~~~~~~~-~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll----~--~~~~~~~l 726 (1151)
T 2eyq_A 654 QVAVLVPTTLLAQQHYDNFRDRFANW-PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL----Q--SDVKFKDL 726 (1151)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHSTTT-TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH----H--SCCCCSSE
T ss_pred eEEEEechHHHHHHHHHHHHHHhhcC-CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH----h--CCcccccc
Confidence 47999999999999999999877665 6888888876554433 3345455699999999654 2 45778999
Q ss_pred eEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEE
Q 030094 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVE 136 (183)
Q Consensus 78 ~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~ 136 (183)
+++|+||+|++ + .....+++.++...|++++|||+.++...+....+.++..+.
T Consensus 727 ~lvIiDEaH~~-g----~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~ 780 (1151)
T 2eyq_A 727 GLLIVDEEHRF-G----VRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIA 780 (1151)
T ss_dssp EEEEEESGGGS-C----HHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECC
T ss_pred ceEEEechHhc-C----hHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEe
Confidence 99999999995 2 233455666667899999999999888888887777666554
No 56
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.53 E-value=6.9e-15 Score=116.53 Aligned_cols=108 Identities=20% Similarity=0.156 Sum_probs=84.5
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
+||++||++|+.|+++.++++... +..++..+.||...... ...+++|+|+||+++... ....+++++++|
T Consensus 160 ~lil~Pt~~L~~q~~~~l~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~I~v~T~~~l~~~----~~~~~~~~~~vI 230 (282)
T 1rif_A 160 ILIIVPTTALTTQMADDFVDYRLF-SHAMIKKIGGGASKDDK----YKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMM 230 (282)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTSC-CGGGEEECSTTCSSTTC----CCTTCSEEEECHHHHTTS----CGGGGGGEEEEE
T ss_pred EEEEECCHHHHHHHHHHHHHhccc-ccceEEEEeCCCcchhh----hccCCcEEEEchHHHHhh----HHHHHhhCCEEE
Confidence 799999999999999999998543 36777788777654321 125689999999876432 334567899999
Q ss_pred EcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHH
Q 030094 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122 (183)
Q Consensus 82 vDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~ 122 (183)
+||||++.+ ..+..+++.+++.+|++++|||+++...
T Consensus 231 iDEaH~~~~----~~~~~il~~~~~~~~~l~lSATp~~~~~ 267 (282)
T 1rif_A 231 NDECHLATG----KSISSIISGLNNCMFKFGLSGSLRDGKA 267 (282)
T ss_dssp EETGGGCCH----HHHHHHTTTCTTCCEEEEECSSCCTTST
T ss_pred EECCccCCc----ccHHHHHHHhhcCCeEEEEeCCCCCcch
Confidence 999999963 4777888888889999999999986643
No 57
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.52 E-value=9.3e-14 Score=119.20 Aligned_cols=127 Identities=20% Similarity=0.185 Sum_probs=91.6
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHH---HHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~---~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||++|+++|+.|+.+.+.++ ++++..+.|+....+.. ..+..+.++|+++||+++...... ..+...++.
T Consensus 68 ~lvi~P~~aL~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~-~~l~~~~~~ 141 (523)
T 1oyw_A 68 TVVVSPLISLMKDQVDQLQAN-----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL-EHLAHWNPV 141 (523)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH-HHHTTSCEE
T ss_pred EEEECChHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHH-HHHhhCCCC
Confidence 689999999999999988875 56788888877655443 334456799999999998533222 234558899
Q ss_pred EEEEcccchhhccc--hHHHH---HHHHHhCCCCCeEEEEeecCChHHHHH-HHhh-CCCCeEE
Q 030094 79 ILVLDEADRLLDMG--FQKQI---SYIISRLPKLRRTGLFSATQTEAVEEL-SKAG-LRNPVRV 135 (183)
Q Consensus 79 ~lVvDEad~ll~~~--~~~~l---~~i~~~l~~~~Q~v~~SAT~~~~v~~~-~~~~-~~~~~~i 135 (183)
++|+||||.+.++| |.... ..+.+.+| +.+++++|||.++.+..- .+.. +.+|..+
T Consensus 142 ~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~ 204 (523)
T 1oyw_A 142 LLAVDEAHCISQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQ 204 (523)
T ss_dssp EEEESSGGGGCTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCEEE
T ss_pred EEEEeCccccCcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE
Confidence 99999999998765 54444 34455564 689999999999987653 3333 3455544
No 58
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.51 E-value=6.8e-14 Score=124.89 Aligned_cols=113 Identities=21% Similarity=0.314 Sum_probs=85.4
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHH---HHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~---~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
+++|++||++||.|+++.+.++.... ++++..++|+....+.. ..+..+.++|+||||+.+.+ .+.++++
T Consensus 419 qvlvlaPtr~La~Q~~~~l~~~~~~~-gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~~~~~~l 491 (780)
T 1gm5_A 419 QTAFMVPTSILAIQHYRRTVESFSKF-NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE------DVHFKNL 491 (780)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHTCS-SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH------CCCCSCC
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhhhc-CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh------hhhccCC
Confidence 58999999999999999999998766 79999999998765543 34445569999999986632 4678999
Q ss_pred eEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHH
Q 030094 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELS 125 (183)
Q Consensus 78 ~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~ 125 (183)
+++|+||+|++- +.. ...+......+|++++|||..++...+.
T Consensus 492 ~lVVIDEaHr~g---~~q--r~~l~~~~~~~~vL~mSATp~p~tl~~~ 534 (780)
T 1gm5_A 492 GLVIIDEQHRFG---VKQ--REALMNKGKMVDTLVMSATPIPRSMALA 534 (780)
T ss_dssp CEEEEESCCCC----------CCCCSSSSCCCEEEEESSCCCHHHHHH
T ss_pred ceEEecccchhh---HHH--HHHHHHhCCCCCEEEEeCCCCHHHHHHH
Confidence 999999999962 221 1223333457899999999887755544
No 59
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.47 E-value=2.2e-14 Score=126.24 Aligned_cols=114 Identities=13% Similarity=0.209 Sum_probs=83.7
Q ss_pred EEEEeCcHHHHHHH-HHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHH------hcCCcCC
Q 030094 2 GMIISPTRELSSQI-YHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIME------RMDVLDF 74 (183)
Q Consensus 2 alIl~PtreLa~Qi-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~------~~~~~~l 74 (183)
+||++||++|+.|+ ++.++++... ++++..+.|+....++...+. .+++|+|+||++|...+. . ..+.+
T Consensus 59 vlvl~P~~~L~~Q~~~~~l~~~~~~--~~~v~~~~g~~~~~~~~~~~~-~~~~Ilv~Tp~~L~~~l~~~~~~~~-~~~~~ 134 (699)
T 4gl2_A 59 VIVLVNKVLLVEQLFRKEFQPFLKK--WYRVIGLSGDTQLKISFPEVV-KSCDIIISTAQILENSLLNLENGED-AGVQL 134 (699)
T ss_dssp BCCEESCSHHHHHHHHHTHHHHHTT--TSCEEEEC----CCCCHHHHH-HSCSEEEEEHHHHHHHTC---------CCCG
T ss_pred EEEEECCHHHHHHHHHHHHHHHcCc--CceEEEEeCCcchhhHHHhhh-cCCCEEEECHHHHHHHHhccccccc-cceec
Confidence 68999999999999 9999998754 488999999877665555553 579999999999999883 3 45778
Q ss_pred CCceEEEEcccchhhccc-hHHHHHHHHHh----C---------CCCCeEEEEeecCCh
Q 030094 75 RNLEILVLDEADRLLDMG-FQKQISYIISR----L---------PKLRRTGLFSATQTE 119 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~-~~~~l~~i~~~----l---------~~~~Q~v~~SAT~~~ 119 (183)
.+++++|+||||++...+ +...+...+.. . .+..|++++|||.+.
T Consensus 135 ~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~ 193 (699)
T 4gl2_A 135 SDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGV 193 (699)
T ss_dssp GGCSEEEEESGGGCBTTBSSCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCC
T ss_pred ccCcEEEEECccccCccchHHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccc
Confidence 999999999999986543 22222222221 1 256899999999986
No 60
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.43 E-value=3.7e-13 Score=120.05 Aligned_cols=85 Identities=16% Similarity=0.137 Sum_probs=72.2
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHH-HHHHHhcC-----CcCC
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMD-----VLDF 74 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l-~~~l~~~~-----~~~l 74 (183)
+|+|++||++||.|+++.+..+..++ ++++.+++||.+..... . ..++||+||||+++ .++++.+- .+.+
T Consensus 122 qv~VvTPTreLA~Qdae~m~~l~~~l-GLsv~~i~Gg~~~~~r~--~-ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~ 197 (997)
T 2ipc_A 122 GVHVVTVNDYLARRDAEWMGPVYRGL-GLSVGVIQHASTPAERR--K-AYLADVTYVTNSELGFDYLRDNMAISPDQLVL 197 (997)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHHHTT-TCCEEECCTTCCHHHHH--H-HHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCS
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHHhc-CCeEEEEeCCCCHHHHH--H-HcCCCEEEECchhhhhHHHHHhhhcchhhccc
Confidence 47999999999999999999999988 89999999998754332 2 24799999999999 88887621 3567
Q ss_pred C---CceEEEEcccchhh
Q 030094 75 R---NLEILVLDEADRLL 89 (183)
Q Consensus 75 ~---~l~~lVvDEad~ll 89 (183)
+ ++.++|+||||.||
T Consensus 198 r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 198 RHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp CSSSSSCEEEETTHHHHT
T ss_pred ccCCCcceEEEechHHHH
Confidence 8 99999999999987
No 61
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.43 E-value=1.9e-13 Score=116.22 Aligned_cols=108 Identities=20% Similarity=0.162 Sum_probs=87.1
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.+|||+||++|+.|+++.++++... ++.++..+.|+....++ ...+++|+||||+.+.. . ....++++.++
T Consensus 159 ~vlvl~P~~~L~~Q~~~~~~~~~~~-~~~~v~~~~~~~~~~~~----~~~~~~I~i~T~~~l~~---~-~~~~~~~~~li 229 (510)
T 2oca_A 159 KILIIVPTTALTTQMADDFVDYRLF-SHAMIKKIGGGASKDDK----YKNDAPVVVGTWQTVVK---Q-PKEWFSQFGMM 229 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTSS-CGGGEEECGGGCCTTGG----GCTTCSEEEEEHHHHTT---S-CGGGGGGEEEE
T ss_pred eEEEEECcHHHHHHHHHHHHHhhcC-CccceEEEecCCccccc----cccCCcEEEEeHHHHhh---c-hhhhhhcCCEE
Confidence 3799999999999999999988543 46788888888776544 24679999999996543 2 34567889999
Q ss_pred EEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHH
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v 121 (183)
|+||+|++.. .....+++.+++..+++++|||+++..
T Consensus 230 IiDE~H~~~~----~~~~~il~~~~~~~~~l~lSATp~~~~ 266 (510)
T 2oca_A 230 MNDECHLATG----KSISSIISGLNNCMFKFGLSGSLRDGK 266 (510)
T ss_dssp EEETGGGCCH----HHHHHHGGGCTTCCEEEEEESCGGGCS
T ss_pred EEECCcCCCc----ccHHHHHHhcccCcEEEEEEeCCCCCc
Confidence 9999999854 457778888888899999999997664
No 62
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.29 E-value=2.7e-11 Score=108.29 Aligned_cols=125 Identities=18% Similarity=0.118 Sum_probs=81.8
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
+++++|+|+||.|+++.+.... +.++...+|+....+. ....+++|+++|||++.+.+.. ...+.+++++|
T Consensus 143 ilvl~P~r~La~q~~~~l~~~~----~~~v~~~vG~~i~~~~---~~~~~~~I~v~T~G~l~r~l~~--~~~l~~~~~lI 213 (773)
T 2xau_A 143 VACTQPRRVAAMSVAQRVAEEM----DVKLGEEVGYSIRFEN---KTSNKTILKYMTDGMLLREAME--DHDLSRYSCII 213 (773)
T ss_dssp EEEEESCHHHHHHHHHHHHHHT----TCCBTTTEEEEETTEE---ECCTTCSEEEEEHHHHHHHHHH--STTCTTEEEEE
T ss_pred EEecCchHHHHHHHHHHHHHHh----CCchhheecceecccc---ccCCCCCEEEECHHHHHHHHhh--CccccCCCEEE
Confidence 6889999999999987665543 2222222221110000 0124689999999999988866 35689999999
Q ss_pred Ecccch-hhccch-HHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEcc
Q 030094 82 LDEADR-LLDMGF-QKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRA 139 (183)
Q Consensus 82 vDEad~-ll~~~~-~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~ 139 (183)
+||+|. .++..+ ...+..+.... ++.|++++|||++. +.+.+ ++.++..+.+..
T Consensus 214 lDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~--~~l~~-~~~~~~vi~v~g 269 (773)
T 2xau_A 214 LDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDA--EKFQR-YFNDAPLLAVPG 269 (773)
T ss_dssp ECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCC--HHHHH-HTTSCCEEECCC
T ss_pred ecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccH--HHHHH-HhcCCCcccccC
Confidence 999996 665432 34455555544 57899999999974 34544 555555555443
No 63
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.28 E-value=8.7e-12 Score=105.03 Aligned_cols=94 Identities=20% Similarity=0.159 Sum_probs=74.8
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCce-EEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVK-SVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEI 79 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~ 79 (183)
.+||+|||++|+.|+++.+.++ +++ +..+.|+.. ..++|+|+||+.+...+... .+++.+
T Consensus 135 ~~Lvl~P~~~L~~Q~~~~~~~~-----~~~~v~~~~g~~~----------~~~~Ivv~T~~~l~~~~~~~----~~~~~l 195 (472)
T 2fwr_A 135 PTLIVVPTLALAEQWKERLGIF-----GEEYVGEFSGRIK----------ELKPLTVSTYDSAYVNAEKL----GNRFML 195 (472)
T ss_dssp CEEEEESSHHHHHHHHHHGGGG-----CGGGEEEBSSSCB----------CCCSEEEEEHHHHHHTHHHH----TTTCSE
T ss_pred CEEEEECCHHHHHHHHHHHHhC-----CCcceEEECCCcC----------CcCCEEEEEcHHHHHHHHHh----cCCCCE
Confidence 4799999999999999988884 566 777777654 35799999999988776541 245889
Q ss_pred EEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCC
Q 030094 80 LVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (183)
Q Consensus 80 lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~ 118 (183)
+|+||||.+.+.+|.. +++.+ +..+++++|||+.
T Consensus 196 iIvDEaH~~~~~~~~~----~~~~~-~~~~~l~lSATp~ 229 (472)
T 2fwr_A 196 LIFDEVHHLPAESYVQ----IAQMS-IAPFRLGLTATFE 229 (472)
T ss_dssp EEEETGGGTTSTTTHH----HHHTC-CCSEEEEEESCCC
T ss_pred EEEECCcCCCChHHHH----HHHhc-CCCeEEEEecCcc
Confidence 9999999998877654 45555 4689999999997
No 64
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.26 E-value=4.4e-12 Score=110.80 Aligned_cols=120 Identities=15% Similarity=0.147 Sum_probs=83.8
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.+||++||||||.|+++.+..+ .+. ..++ ... .....+-.+-+.|.+.+...+.. ...+++++++
T Consensus 217 ~vLvl~PtreLa~Qi~~~l~~~-------~v~-~~~~-~l~----~~~tp~~~i~~~t~~~l~~~l~~--~~~l~~~~~i 281 (618)
T 2whx_A 217 RTLILAPTRVVAAEMEEALRGL-------PIR-YQTP-AVK----SDHTGREIVDLMCHATFTTRLLS--STRVPNYNLI 281 (618)
T ss_dssp CEEEEESSHHHHHHHHHHTTTS-------CEE-ECCT-TSS----CCCCSSSCEEEEEHHHHHHHHHH--CSSCCCCSEE
T ss_pred eEEEEcChHHHHHHHHHHhcCC-------cee-Eecc-cce----eccCCCceEEEEChHHHHHHHhc--cccccCCeEE
Confidence 4899999999999999876532 222 1111 100 00112345667787777766655 2568999999
Q ss_pred EEcccchhhccchHHHHHHHHHhCC-CCCeEEEEeecCChHHHHHHHhhCCCCeEEEEcc
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRA 139 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~-~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~~ 139 (183)
|+||||.+ +.+|...+..+.+.++ +++|+++||||+++.+..+.. .++..+.+..
T Consensus 282 ViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~ 337 (618)
T 2whx_A 282 VMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIER 337 (618)
T ss_dssp EEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEEC
T ss_pred EEECCCCC-CccHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecc
Confidence 99999998 7778888888888875 689999999999988654433 3666666544
No 65
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.24 E-value=7.7e-13 Score=111.22 Aligned_cols=102 Identities=23% Similarity=0.304 Sum_probs=68.2
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcE-EEeCcHHHHHHHHh-------cCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANL-LIGTPGRLYDIMER-------MDVL 72 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~I-iV~TP~~l~~~l~~-------~~~~ 72 (183)
+++|++|||+||.|+++.+..+ ++. ...+ .+ .|+||+++.+++.. ....
T Consensus 39 ~~lil~Ptr~La~Q~~~~l~~~-----~v~--~~~~----------------~~~~v~Tp~~l~~~l~~~~l~~~~~~~~ 95 (440)
T 1yks_A 39 RTLVLAPTRVVLSEMKEAFHGL-----DVK--FHTQ----------------AFSAHGSGREVIDAMCHATLTYRMLEPT 95 (440)
T ss_dssp CEEEEESSHHHHHHHHHHTTTS-----CEE--EESS----------------CCCCCCCSSCCEEEEEHHHHHHHHTSSS
T ss_pred eEEEEcchHHHHHHHHHHHhcC-----CeE--Eecc----------------cceeccCCccceeeecccchhHhhhCcc
Confidence 4899999999999999877644 222 1111 11 37888777654433 0123
Q ss_pred CCCCceEEEEcccchhhccchHHHHHHHHHhC-CCCCeEEEEeecCChHHHHHHH
Q 030094 73 DFRNLEILVLDEADRLLDMGFQKQISYIISRL-PKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 73 ~l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l-~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
.+++++++|+||||.+ +.++...+..+.+.. ++++|+++||||+++.+..+..
T Consensus 96 ~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~ 149 (440)
T 1yks_A 96 RVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPGTSDEFPH 149 (440)
T ss_dssp CCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCC
T ss_pred cccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCchhhhhhh
Confidence 4899999999999998 444443333333333 3679999999999988655444
No 66
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.23 E-value=6.6e-12 Score=108.75 Aligned_cols=103 Identities=12% Similarity=0.067 Sum_probs=56.2
Q ss_pred EEEEeCcHHHHHHHH-HHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhc---CCcCCCCc
Q 030094 2 GMIISPTRELSSQIY-HVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM---DVLDFRNL 77 (183)
Q Consensus 2 alIl~PtreLa~Qi~-~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~---~~~~l~~l 77 (183)
+|||+||++|+.|++ +.++.+. ..+..+.++. ...+.+|+|+||+++....... ..+...++
T Consensus 238 vlil~P~~~L~~Q~~~~~~~~~~-----~~~~~~~~~~---------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~ 303 (590)
T 3h1t_A 238 ILFLADRNVLVDDPKDKTFTPFG-----DARHKIEGGK---------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFF 303 (590)
T ss_dssp EEEEEC-----------CCTTTC-----SSEEECCC-----------CCSSCSEEEEEGGGC------CCGGGGSCTTSC
T ss_pred EEEEeCCHHHHHHHHHHHHHhcc-----hhhhhhhccC---------CCCCCcEEEEEhhhhccccccccccccCCCCcc
Confidence 799999999999998 7666553 2233333221 1457899999999999886521 34567789
Q ss_pred eEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChH
Q 030094 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120 (183)
Q Consensus 78 ~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~ 120 (183)
+++|+||||++...+ ...+..+++.++ ..+++++|||....
T Consensus 304 ~lvIiDEaH~~~~~~-~~~~~~il~~~~-~~~~l~lTATP~~~ 344 (590)
T 3h1t_A 304 DLIIIDECHRGSARD-NSNWREILEYFE-PAFQIGMTATPLRE 344 (590)
T ss_dssp SEEEESCCC----------CHHHHHHST-TSEEEEEESSCSCT
T ss_pred CEEEEECCccccccc-hHHHHHHHHhCC-cceEEEeccccccc
Confidence 999999999986532 356677778875 57899999997743
No 67
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.23 E-value=2e-11 Score=111.81 Aligned_cols=107 Identities=13% Similarity=0.175 Sum_probs=81.2
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCc-CCCCceEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVL-DFRNLEIL 80 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~-~l~~l~~l 80 (183)
+|||||+++|+.|+.+.+.++.... +.|+.+.......+...+++|+|+||+++..+++....+ .++...++
T Consensus 333 vLvlvpr~eL~~Q~~~~f~~f~~~~-------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lv 405 (1038)
T 2w00_A 333 VFFVVDRKDLDYQTMKEYQRFSPDS-------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVF 405 (1038)
T ss_dssp EEEEECGGGCCHHHHHHHHTTSTTC-------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEE
T ss_pred EEEEeCcHHHHHHHHHHHHHhcccc-------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEE
Confidence 7999999999999999998875421 234555555555564567999999999999998762222 45677899
Q ss_pred EEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCCh
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~ 119 (183)
|+||||++.. ......|.+.+| ++++++||||...
T Consensus 406 IiDEAHrs~~---~~~~~~I~~~~p-~a~~lgfTATP~~ 440 (1038)
T 2w00_A 406 IFDECHRSQF---GEAQKNLKKKFK-RYYQFGFTGTPIF 440 (1038)
T ss_dssp EEESCCTTHH---HHHHHHHHHHCS-SEEEEEEESSCCC
T ss_pred EEEccchhcc---hHHHHHHHHhCC-cccEEEEeCCccc
Confidence 9999999863 334556777775 5899999999874
No 68
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.22 E-value=6.6e-11 Score=91.62 Aligned_cols=96 Identities=20% Similarity=0.121 Sum_probs=72.7
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCce-EEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVK-SVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEI 79 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~ 79 (183)
.++|++||++|+.|+++.+.++ +++ +..+.|+.. ...+|+|+||+.+...... ..+++++
T Consensus 135 ~~liv~P~~~L~~q~~~~~~~~-----~~~~v~~~~g~~~----------~~~~i~v~T~~~l~~~~~~----~~~~~~l 195 (237)
T 2fz4_A 135 PTLIVVPTLALAEQWKERLGIF-----GEEYVGEFSGRIK----------ELKPLTVSTYDSAYVNAEK----LGNRFML 195 (237)
T ss_dssp CEEEEESSHHHHHHHHHHHGGG-----CGGGEEEESSSCB----------CCCSEEEEEHHHHHHTHHH----HTTTCSE
T ss_pred CEEEEeCCHHHHHHHHHHHHhC-----CCCeEEEEeCCCC----------CcCCEEEEeHHHHHhhHHH----hcccCCE
Confidence 3789999999999999988874 566 666666554 3679999999998776653 1245889
Q ss_pred EEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChH
Q 030094 80 LVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120 (183)
Q Consensus 80 lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~ 120 (183)
+|+||||.+.+..+. .+++.++ ..+++++|||....
T Consensus 196 lIiDEaH~l~~~~~~----~i~~~~~-~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 196 LIFDEVHHLPAESYV----QIAQMSI-APFRLGLTATFERE 231 (237)
T ss_dssp EEEECSSCCCTTTHH----HHHHTCC-CSEEEEEEESCC--
T ss_pred EEEECCccCCChHHH----HHHHhcc-CCEEEEEecCCCCC
Confidence 999999999776554 3555554 68899999998754
No 69
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.22 E-value=2.3e-11 Score=102.47 Aligned_cols=119 Identities=13% Similarity=0.082 Sum_probs=79.6
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.+||++|||+||.|+++.+..+ .+....+.... ....+..|.++||+.+...+.+ ...+++++++
T Consensus 50 ~~lvl~Ptr~La~Q~~~~l~g~-------~v~~~~~~~~~------~~~~~~~i~~~t~~~l~~~l~~--~~~l~~~~~i 114 (451)
T 2jlq_A 50 RTLILAPTRVVAAEMEEALRGL-------PIRYQTPAVKS------DHTGREIVDLMCHATFTTRLLS--STRVPNYNLI 114 (451)
T ss_dssp CEEEEESSHHHHHHHHHHTTTS-------CEEECCTTCSC------CCCSSCCEEEEEHHHHHHHHHH--CSCCCCCSEE
T ss_pred cEEEECCCHHHHHHHHHHhcCc-------eeeeeeccccc------cCCCCceEEEEChHHHHHHhhC--cccccCCCEE
Confidence 4799999999999999876422 22211111110 0123567999999999888876 3568899999
Q ss_pred EEcccchhhccchHHHHHHHHH-hCCCCCeEEEEeecCChHHHHHHHhhCCCCeEEEEc
Q 030094 81 VLDEADRLLDMGFQKQISYIIS-RLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVR 138 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~-~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i~~~ 138 (183)
|+||||.+ +.++...+..+.. ..++++|+++||||+++++.. .+..++..+...
T Consensus 115 ViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~---~~~~~~~~~~~~ 169 (451)
T 2jlq_A 115 VMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDP---FPQSNSPIEDIE 169 (451)
T ss_dssp EEETTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCS---SCCCSSCEEEEE
T ss_pred EEeCCccC-CcchHHHHHHHHHhhcCCCceEEEEccCCCccchh---hhcCCCceEecC
Confidence 99999987 4444443333332 235689999999999876443 244566666554
No 70
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.17 E-value=1.1e-10 Score=97.83 Aligned_cols=108 Identities=18% Similarity=0.187 Sum_probs=72.2
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
+++|++||++||.|+++.+. ++.+....|+... ....+.-+.+.|.+.+...+.. ...+++++++
T Consensus 33 ~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~~------~~~~~~~~~~~~~~~l~~~l~~--~~~~~~l~~v 97 (431)
T 2v6i_A 33 RTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQS------ERTGNEIVDFMCHSTFTMKLLQ--GVRVPNYNLY 97 (431)
T ss_dssp CEEEEESSHHHHHHHHHHTT-------TSCEEEC---------------CCCSEEEEEHHHHHHHHHH--TCCCCCCSEE
T ss_pred CEEEECcHHHHHHHHHHHhC-------CCeEEEEecCccc------cCCCCceEEEEchHHHHHHHhc--CccccCCCEE
Confidence 58999999999999987654 3344444443211 1122455667788888776655 4568899999
Q ss_pred EEcccchhhccchHHHHHHHHHhC-CCCCeEEEEeecCChHHHHH
Q 030094 81 VLDEADRLLDMGFQKQISYIISRL-PKLRRTGLFSATQTEAVEEL 124 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l-~~~~Q~v~~SAT~~~~v~~~ 124 (183)
|+||||.+ +.++......+.+.. ++++|++++|||+++.+..+
T Consensus 98 ViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~ 141 (431)
T 2v6i_A 98 IMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAF 141 (431)
T ss_dssp EEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSS
T ss_pred EEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhh
Confidence 99999997 544444444444432 56899999999999875443
No 71
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.12 E-value=4.1e-11 Score=105.52 Aligned_cols=115 Identities=19% Similarity=0.116 Sum_probs=83.0
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
++|++|||+||.|+++.+.++ ++++..++|+...-.. -.....+++++|++.+. ..+.++++|
T Consensus 182 gl~l~PtR~LA~Qi~~~l~~~-----g~~v~lltG~~~~iv~---TpGr~~~il~~T~e~~~---------l~~~v~lvV 244 (677)
T 3rc3_A 182 GVYCGPLKLLAHEIFEKSNAA-----GVPCDLVTGEERVTVQ---PNGKQASHVSCTVEMCS---------VTTPYEVAV 244 (677)
T ss_dssp EEEEESSHHHHHHHHHHHHHT-----TCCEEEECSSCEECCS---TTCCCCSEEEEEGGGCC---------SSSCEEEEE
T ss_pred eEEEeCHHHHHHHHHHHHHhc-----CCcEEEEECCeeEEec---CCCcccceeEecHhHhh---------hcccCCEEE
Confidence 589999999999999998775 5678888887654000 00012567777763221 246779999
Q ss_pred EcccchhhccchHHHHHHHHHhCC-CCCeEEEEeecCChHHHHHHHhhCCCCeEE
Q 030094 82 LDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAVEELSKAGLRNPVRV 135 (183)
Q Consensus 82 vDEad~ll~~~~~~~l~~i~~~l~-~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i 135 (183)
+||||.+++.++...+..++..++ +..|++++|||. +.+..++... ..+..+
T Consensus 245 IDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~-~~i~~l~~~~-~~~~~v 297 (677)
T 3rc3_A 245 IDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAI-DLVMELMYTT-GEEVEV 297 (677)
T ss_dssp ECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGH-HHHHHHHHHH-TCCEEE
T ss_pred EecceecCCccchHHHHHHHHccCccceEEEeccchH-HHHHHHHHhc-CCceEE
Confidence 999999999899999999999888 778999999995 4456555543 334333
No 72
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.10 E-value=8.1e-12 Score=110.04 Aligned_cols=103 Identities=18% Similarity=0.276 Sum_probs=64.9
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhc-------CCcC
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM-------DVLD 73 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~-------~~~~ 73 (183)
++||++|||+||.|+++.+..+ ++. ...+ . + . .++||+++.+++... ....
T Consensus 272 ~~lilaPTr~La~Q~~~~l~~~-----~i~--~~~~--~-------l-~-----~v~tp~~ll~~l~~~~l~~~l~~~~~ 329 (673)
T 2wv9_A 272 RTAVLAPTRVVAAEMAEALRGL-----PVR--YLTP--A-------V-Q-----REHSGNEIVDVMCHATLTHRLMSPLR 329 (673)
T ss_dssp CEEEEESSHHHHHHHHHHTTTS-----CCE--ECCC------------------CCCCSCCCEEEEEHHHHHHHHHSSSC
T ss_pred cEEEEccHHHHHHHHHHHHhcC-----Cee--eecc--c-------c-c-----ccCCHHHHHHHHHhhhhHHHHhcccc
Confidence 5899999999999999877654 222 1000 0 0 0 145665543332220 1246
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhC-CCCCeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRL-PKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l-~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
+++++++|+||||.+ +..+...+..+.+.+ ++.+|+++||||+++.+..+..
T Consensus 330 l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~ 382 (673)
T 2wv9_A 330 VPNYNLFVMDEAHFT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPD 382 (673)
T ss_dssp CCCCSEEEEESTTCC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCC
T ss_pred cccceEEEEeCCccc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhcc
Confidence 899999999999998 333333444444433 3689999999999988654433
No 73
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.08 E-value=8.9e-11 Score=99.09 Aligned_cols=113 Identities=12% Similarity=0.159 Sum_probs=71.5
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.+||++|||+||.|+++.+..+ .+....+.... . ...+..+.+.|.+.+...+.. ...+++++++
T Consensus 52 ~~lvl~Ptr~La~Q~~~~l~g~-------~v~~~~~~~~~-----~-~t~~~~i~~~~~~~l~~~l~~--~~~l~~~~~i 116 (459)
T 2z83_A 52 RTAVLAPTRVVAAEMAEALRGL-------PVRYQTSAVQR-----E-HQGNEIVDVMCHATLTHRLMS--PNRVPNYNLF 116 (459)
T ss_dssp CEEEEECSHHHHHHHHHHTTTS-------CEEECC--------------CCCSEEEEEHHHHHHHHHS--CC-CCCCSEE
T ss_pred cEEEECchHHHHHHHHHHhcCc-------eEeEEeccccc-----C-CCCCcEEEEEchHHHHHHhhc--cccccCCcEE
Confidence 3799999999999999877622 22211111110 0 122445778888887776654 4678999999
Q ss_pred EEcccch-----hhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhCCCCeEE
Q 030094 81 VLDEADR-----LLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRV 135 (183)
Q Consensus 81 VvDEad~-----ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~~~~~~i 135 (183)
|+||||. ++..++...+. .++.+|+++||||++.++..+... ..|+..
T Consensus 117 ViDEaH~~~~~~~~~~~~~~~~~-----~~~~~~~il~SAT~~~~~~~~~~~--~~pi~~ 169 (459)
T 2z83_A 117 VMDEAHFTDPASIAARGYIATKV-----ELGEAAAIFMTATPPGTTDPFPDS--NAPIHD 169 (459)
T ss_dssp EESSTTCCSHHHHHHHHHHHHHH-----HTTSCEEEEECSSCTTCCCSSCCC--SSCEEE
T ss_pred EEECCccCCchhhHHHHHHHHHh-----ccCCccEEEEEcCCCcchhhhccC--CCCeEE
Confidence 9999998 44444433322 136899999999999876544332 345443
No 74
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.73 E-value=1.7e-08 Score=86.94 Aligned_cols=87 Identities=21% Similarity=0.151 Sum_probs=65.0
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcch---------------------------------HHHHHH--
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEV---------------------------------KADVKK-- 46 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~---------------------------------~~~~~~-- 46 (183)
++|++||++|+.|+.+.+.++.+.. ++++..+.|+... ......
T Consensus 50 v~i~~pt~~l~~q~~~~~~~l~~~~-~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~ 128 (551)
T 3crv_A 50 VLFVVRTHNEFYPIYRDLTKIREKR-NITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLK 128 (551)
T ss_dssp EEEEESSGGGHHHHHHHHTTCCCSS-CCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHHHHhhhc-CccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHH
Confidence 7999999999999999999997665 7888887774321 111111
Q ss_pred ---------------HHhcCCcEEEeCcHHHHHHHHhcCCcCC-CCceEEEEcccchhhc
Q 030094 47 ---------------IEEEGANLLIGTPGRLYDIMERMDVLDF-RNLEILVLDEADRLLD 90 (183)
Q Consensus 47 ---------------l~~~~~~IiV~TP~~l~~~l~~~~~~~l-~~l~~lVvDEad~ll~ 90 (183)
....++||||+||+.|.+...+ ..+.+ ....++|+||||.|.+
T Consensus 129 ~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~~-~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 129 KDGLQDKFCPYYSLLNSLYKADVIALTYPYFFIDRYR-EFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHHHHHTCCHHHHHHHHGGGCSEEEEETHHHHCHHHH-TTSCCCSTTEEEEETTGGGGGG
T ss_pred HcCCcCCcCccHHHHhhhhcCCEEEeCchHhcCHHHH-HhcCCCcCCeEEEEecccchHH
Confidence 1124789999999999988655 33433 4678999999999987
No 75
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.62 E-value=2.4e-08 Score=84.49 Aligned_cols=100 Identities=17% Similarity=0.213 Sum_probs=71.1
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
+||+||+ .|+.|..+.++++. |+.++....|+... ....+++|+|+||+++..... +......++|
T Consensus 89 ~LIv~P~-~l~~qw~~e~~~~~---~~~~v~~~~g~~~~------~~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vI 154 (500)
T 1z63_A 89 SLVICPL-SVLKNWEEELSKFA---PHLRFAVFHEDRSK------IKLEDYDIILTTYAVLLRDTR----LKEVEWKYIV 154 (500)
T ss_dssp EEEEECS-TTHHHHHHHHHHHC---TTSCEEECSSSTTS------CCGGGSSEEEEEHHHHTTCHH----HHTCCEEEEE
T ss_pred EEEEccH-HHHHHHHHHHHHHC---CCceEEEEecCchh------ccccCCcEEEeeHHHHhccch----hcCCCcCEEE
Confidence 6999995 58899999888875 46677766665532 112468999999998865433 3345678999
Q ss_pred EcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCC
Q 030094 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (183)
Q Consensus 82 vDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~ 118 (183)
+||||.+-+.+ ......+..+ +..+.+++|||..
T Consensus 155 vDEaH~~kn~~--~~~~~~l~~l-~~~~~l~LTaTP~ 188 (500)
T 1z63_A 155 IDEAQNIKNPQ--TKIFKAVKEL-KSKYRIALTGTPI 188 (500)
T ss_dssp EETGGGGSCTT--SHHHHHHHTS-CEEEEEEECSSCS
T ss_pred EeCccccCCHh--HHHHHHHHhh-ccCcEEEEecCCC
Confidence 99999996543 2344455556 3567899999984
No 76
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.42 E-value=1.8e-06 Score=75.65 Aligned_cols=108 Identities=19% Similarity=0.277 Sum_probs=71.7
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHH--HHHHHHh-----cCCcEEEeCcHHHHHHHHhcCCcCC
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKA--DVKKIEE-----EGANLLIGTPGRLYDIMERMDVLDF 74 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~--~~~~l~~-----~~~~IiV~TP~~l~~~l~~~~~~~l 74 (183)
+||+||+ .|+.|..+.+.++... .+.+..+.||..... ....... ...+|+|+|++.+.... ..+..
T Consensus 117 ~LiV~P~-sll~qW~~E~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~---~~l~~ 190 (644)
T 1z3i_X 117 VIVVSPS-SLVRNWYNEVGKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA---EVLHK 190 (644)
T ss_dssp EEEEECH-HHHHHHHHHHHHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT---TTTTT
T ss_pred EEEEecH-HHHHHHHHHHHHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH---HHhhc
Confidence 6899997 8889999999988654 356666666654322 2222211 14789999999887643 33445
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCC
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~ 118 (183)
....++|+||||++-+.. ......+..+ +....+++|||.-
T Consensus 191 ~~~~~vI~DEaH~ikn~~--~~~~~al~~l-~~~~rl~LTgTPi 231 (644)
T 1z3i_X 191 GKVGLVICDEGHRLKNSD--NQTYLALNSM-NAQRRVLISGTPI 231 (644)
T ss_dssp SCCCEEEETTGGGCCTTC--HHHHHHHHHH-CCSEEEEECSSCS
T ss_pred CCccEEEEECceecCChh--hHHHHHHHhc-ccCcEEEEecCcc
Confidence 677899999999985432 2233334444 3567899999973
No 77
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.41 E-value=7e-07 Score=80.09 Aligned_cols=119 Identities=15% Similarity=0.243 Sum_probs=79.6
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHH-----------HhcCCcEEEeCcHHHHHHHHhcC
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKI-----------EEEGANLLIGTPGRLYDIMERMD 70 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l-----------~~~~~~IiV~TP~~l~~~l~~~~ 70 (183)
+||||| ..++.|..+.+.+++ |++++....|+.......... ....++|+|+|++.+......
T Consensus 289 ~LIV~P-~sll~qW~~E~~~~~---p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~-- 362 (800)
T 3mwy_W 289 HIIVVP-LSTMPAWLDTFEKWA---PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE-- 362 (800)
T ss_dssp EEEECC-TTTHHHHHHHHHHHS---TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--
T ss_pred EEEEEC-chHHHHHHHHHHHHC---CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--
Confidence 699999 677888888887764 578888888876655443332 124578999999998765433
Q ss_pred CcCCCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecC----ChHHHHHHHhhCC
Q 030094 71 VLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ----TEAVEELSKAGLR 130 (183)
Q Consensus 71 ~~~l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~----~~~v~~~~~~~~~ 130 (183)
+......++|+||||++-+. .......+..+ +....+++|||. ..++..+.+...+
T Consensus 363 -l~~~~w~~vIvDEaH~lkn~--~s~~~~~l~~l-~~~~rl~LTgTPiqN~l~el~~ll~fL~p 422 (800)
T 3mwy_W 363 -LGSIKWQFMAVDEAHRLKNA--ESSLYESLNSF-KVANRMLITGTPLQNNIKELAALVNFLMP 422 (800)
T ss_dssp -HHTSEEEEEEETTGGGGCCS--SSHHHHHHTTS-EEEEEEEECSCCCSSCSHHHHHHHHHHCS
T ss_pred -HhcCCcceeehhhhhhhcCc--hhHHHHHHHHh-hhccEEEeeCCcCCCCHHHHHHHHHHhCc
Confidence 33345789999999998432 23444455555 456678899997 2334444444433
No 78
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.30 E-value=1.7e-07 Score=85.69 Aligned_cols=108 Identities=19% Similarity=0.137 Sum_probs=66.4
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHH--HhcCCcEEEeCcHHHHHHHHhcCCcCCCCceE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKI--EEEGANLLIGTPGRLYDIMERMDVLDFRNLEI 79 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l--~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~ 79 (183)
+|||||+ .|+.|..+.+.+.. ++++..+.|+... ...... .....+|+|+|++.+.........+...++.+
T Consensus 203 vLIVvP~-sLl~Qw~~E~~~~f----~l~v~v~~~~~~~-~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dl 276 (968)
T 3dmq_A 203 VLIIVPE-TLQHQWLVEMLRRF----NLRFALFDDERYA-EAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDL 276 (968)
T ss_dssp EEEECCT-TTHHHHHHHHHHHS----CCCCEECCHHHHH-HHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCE
T ss_pred EEEEeCH-HHHHHHHHHHHHHh----CCCEEEEccchhh-hhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCE
Confidence 7999999 99999988886543 4444444443222 111110 01256999999987754221111234567889
Q ss_pred EEEcccchhhccch-----HHHHHHHHHhCCCCCeEEEEeecCC
Q 030094 80 LVLDEADRLLDMGF-----QKQISYIISRLPKLRRTGLFSATQT 118 (183)
Q Consensus 80 lVvDEad~ll~~~~-----~~~l~~i~~~l~~~~Q~v~~SAT~~ 118 (183)
+|+||||++-..+. ...+..+. .+.++++++|||..
T Consensus 277 VIvDEAH~~kn~~~~~s~~~~~l~~L~---~~~~~~L~LTATPi 317 (968)
T 3dmq_A 277 LVVDEAHHLVWSEDAPSREYQAIEQLA---EHVPGVLLLTATPE 317 (968)
T ss_dssp EEECCSSCCCCBTTBCCHHHHHHHHHH---TTCSSEEESCSSCS
T ss_pred EEehhhHhhcCCCCcchHHHHHHHHHh---hcCCcEEEEEcCCc
Confidence 99999999964332 22333332 24567999999974
No 79
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.17 E-value=1.4e-06 Score=74.94 Aligned_cols=81 Identities=21% Similarity=0.259 Sum_probs=52.0
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcch--------H-H--------------------------H---
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEV--------K-A--------------------------D--- 43 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~--------~-~--------------------------~--- 43 (183)
++|++||++|+.|+.+.+.++ ++++..+.|.... . + +
T Consensus 54 ~~~~~~t~~l~~q~~~~~~~l-----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~ 128 (540)
T 2vl7_A 54 VLIFTRTHSQLDSIYKNAKLL-----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKD 128 (540)
T ss_dssp EEEEESCHHHHHHHHHHHGGG-----TCCEEEC-----------------------------------------------
T ss_pred EEEEcCCHHHHHHHHHHHHhc-----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhh
Confidence 789999999999999887775 3444444443210 0 0 0
Q ss_pred ---------HHHHHhcCCcEEEeCcHHHHHHHHhcCCcC-------CCCceEEEEcccchhh
Q 030094 44 ---------VKKIEEEGANLLIGTPGRLYDIMERMDVLD-------FRNLEILVLDEADRLL 89 (183)
Q Consensus 44 ---------~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~-------l~~l~~lVvDEad~ll 89 (183)
.+.. ..++||+|+|+..+.+.... +.+. +....++|+||||.+.
T Consensus 129 ~~~~Cpy~~~r~~-~~~adiVV~n~~~l~~~~~~-~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 129 AVDYCPYYSLRAN-LKDKDVIAMTYPYLFQKPIR-NSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp ----------CTT-GGGCSEEEEETHHHHSHHHH-HHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred hcCCChHHHHHHH-hhcCCEEEEChHHhcCHHHH-HhhCcccccccCcCCCEEEEEccccHH
Confidence 0000 13579999999999886544 2222 3567899999999994
No 80
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=97.53 E-value=0.0003 Score=62.38 Aligned_cols=85 Identities=15% Similarity=0.051 Sum_probs=62.8
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcC-------------------------------------------
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGG------------------------------------------- 37 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~------------------------------------------- 37 (183)
.+.|++||++||.|-.+.+..+..++ ++++.+++..
T Consensus 118 ~vhVvT~ndyLA~rdae~m~~l~~~L-glsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 196 (822)
T 3jux_A 118 GVHLVTVNDYLARRDALWMGPVYLFL-GLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEA 196 (822)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHT-TCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHH
T ss_pred ceEEEeccHHHHHhHHHHHHHHHHHh-CCEEEEEcCCCcccccccccchhhhhhhccccccccccccccccccccccccc
Confidence 37899999999999999999999998 9999999872
Q ss_pred -------cchHHHHHHHHhcCCcEEEeCcHHHH-HHHHhcC-----CcCCCCceEEEEcccchhh
Q 030094 38 -------VEVKADVKKIEEEGANLLIGTPGRLY-DIMERMD-----VLDFRNLEILVLDEADRLL 89 (183)
Q Consensus 38 -------~~~~~~~~~l~~~~~~IiV~TP~~l~-~~l~~~~-----~~~l~~l~~lVvDEad~ll 89 (183)
.+..+ .+. ...|||.=||...+- ++++.+= ..-.+...+.|+||+|.+|
T Consensus 197 ~~~~~~~~~~~e-rr~--aY~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiL 258 (822)
T 3jux_A 197 VEAFQVELKEIT-RKE--AYLCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVL 258 (822)
T ss_dssp HTTTCEECCBCC-HHH--HHHSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHH
T ss_pred chhccccCCHHH-HHH--HhcCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEeccccee
Confidence 11111 112 135899999998863 3444311 1224667899999999986
No 81
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.25 E-value=0.00047 Score=59.99 Aligned_cols=98 Identities=20% Similarity=0.319 Sum_probs=56.7
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEe-CcHHHHHHHHhcCCcCCCCceEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIG-TPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~-TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
+++++||+++|.++.+.+....... +++.... .+.. .+ ....|-+++ +|+.. . +.. ...+..+++++
T Consensus 199 vll~APTg~AA~~L~e~~~~~~~~l-~l~~~~~-~~~~--~~-----~~Tih~ll~~~~~~~-~-~~~-~~~~~l~~d~l 266 (608)
T 1w36_D 199 IRLAAPTGKAAARLTESLGKALRQL-PLTDEQK-KRIP--ED-----ASTLHRLLGAQPGSQ-R-LRH-HAGNPLHLDVL 266 (608)
T ss_dssp EEEEBSSHHHHHHHHHHHTHHHHHS-SCCSCCC-CSCS--CC-----CBTTTSCC--------------CTTSCCSCSEE
T ss_pred EEEEeCChhHHHHHHHHHHHHHhcC-CCCHHHH-hccc--hh-----hhhhHhhhccCCCch-H-HHh-ccCCCCCCCEE
Confidence 6789999999999999888776654 3321100 0000 00 011222222 33221 1 122 22233478999
Q ss_pred EEcccchhhccchHHHHHHHHHhCCCCCeEEEEee
Q 030094 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (183)
Q Consensus 81 VvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SA 115 (183)
|+|||+ |++ ...+..+++.++..+|+++++=
T Consensus 267 IIDEAs-ml~---~~~~~~Ll~~l~~~~~liLvGD 297 (608)
T 1w36_D 267 VVDEAS-MID---LPMMSRLIDALPDHARVIFLGD 297 (608)
T ss_dssp EECSGG-GCB---HHHHHHHHHTCCTTCEEEEEEC
T ss_pred EEechh-hCC---HHHHHHHHHhCCCCCEEEEEcc
Confidence 999999 554 5678889999999999999864
No 82
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=96.14 E-value=0.0024 Score=56.11 Aligned_cols=74 Identities=19% Similarity=0.184 Sum_probs=45.7
Q ss_pred EEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEcccchhhcc--chHHHHH----HHHHh----
Q 030094 34 LVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDM--GFQKQIS----YIISR---- 103 (183)
Q Consensus 34 ~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEad~ll~~--~~~~~l~----~i~~~---- 103 (183)
+.|+.+...+..... .| +||++|.+++.. + .++|+||+|.+++. ++..... .+.+.
T Consensus 303 ~~G~e~~~~~~~~~~-~g-----~tpg~LlDyl~~-~-------~llVlDEa~~~l~~~~~~~~~~~~~~~~l~~~G~~l 368 (661)
T 2d7d_A 303 CSGIENYSRHLTLRP-PG-----STPYTLLDYFPD-D-------FMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRL 368 (661)
T ss_dssp CTTGGGGHHHHTTCC-TT-----CCCBCGGGGSCS-S-------CEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred eccchhHHHHHcccc-CC-----CCccHHHHHccc-C-------cEEEEecHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 345555555544432 23 999999999854 2 28999999998742 1222111 11111
Q ss_pred --------------CCCCCeEEEEeecCChHH
Q 030094 104 --------------LPKLRRTGLFSATQTEAV 121 (183)
Q Consensus 104 --------------l~~~~Q~v~~SAT~~~~v 121 (183)
.++.+|+++||||.++..
T Consensus 369 p~~l~~~~l~~~e~~~~~~q~i~~SAT~~~~~ 400 (661)
T 2d7d_A 369 PSALDNRPLRFEEFEKHMHNIVYVSATPGPYE 400 (661)
T ss_dssp GGGGGSCCCCHHHHHHTCSEEEEECSSCCHHH
T ss_pred hhhhhcccccHHHHhccCCCEEEEecCCChhH
Confidence 124689999999998664
No 83
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=96.08 E-value=0.062 Score=39.42 Aligned_cols=71 Identities=18% Similarity=0.263 Sum_probs=54.1
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||.|+|++-+..+.+.+... ++.+..+.|+.+..++.. ...++..+|+|+|. .+. .++|+.++.
T Consensus 57 ~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~--~Gldi~~v~ 124 (191)
T 2p6n_A 57 VLIFAEKKADVDAIHEYLLLK-----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VAS--KGLDFPAIQ 124 (191)
T ss_dssp EEEECSCHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHH--TTCCCCCCS
T ss_pred EEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chh--cCCCcccCC
Confidence 799999999999998888765 567888888876544433 34456789999993 443 478999999
Q ss_pred EEEEcc
Q 030094 79 ILVLDE 84 (183)
Q Consensus 79 ~lVvDE 84 (183)
++|.-+
T Consensus 125 ~VI~~d 130 (191)
T 2p6n_A 125 HVINYD 130 (191)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 888643
No 84
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=95.97 E-value=0.06 Score=38.20 Aligned_cols=73 Identities=14% Similarity=0.216 Sum_probs=54.7
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
.+||.|+|++-+..+.+.+... ++.+..+.|+.+..+... ...++..+|+|+|. .+. .++|+.++
T Consensus 37 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gld~~~~ 104 (163)
T 2hjv_A 37 SCIIFCRTKEHVNQLTDELDDL-----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VAA--RGIDIENI 104 (163)
T ss_dssp SEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGT--TTCCCSCC
T ss_pred cEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh--cCCchhcC
Confidence 3799999999999998887765 567888888876544433 34456789999994 332 57899999
Q ss_pred eEEEEccc
Q 030094 78 EILVLDEA 85 (183)
Q Consensus 78 ~~lVvDEa 85 (183)
.++|.-+.
T Consensus 105 ~~Vi~~~~ 112 (163)
T 2hjv_A 105 SLVINYDL 112 (163)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 99886443
No 85
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=95.75 E-value=0.083 Score=37.49 Aligned_cols=73 Identities=10% Similarity=0.173 Sum_probs=54.2
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
.+||.|+|++-+..+.+.+... ++.+..+.|+.+..+... ....+..+|+|+|. .+. .++|+.++
T Consensus 32 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~G~d~~~~ 99 (165)
T 1fuk_A 32 QAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLA--RGIDVQQV 99 (165)
T ss_dssp CEEEEESSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGT--TTCCCCSC
T ss_pred CEEEEECCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhh--cCCCcccC
Confidence 3799999999999988877764 567888888876544433 34456789999994 332 57899999
Q ss_pred eEEEEccc
Q 030094 78 EILVLDEA 85 (183)
Q Consensus 78 ~~lVvDEa 85 (183)
.++|.-+.
T Consensus 100 ~~Vi~~~~ 107 (165)
T 1fuk_A 100 SLVINYDL 107 (165)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 98886443
No 86
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=95.71 E-value=0.069 Score=39.75 Aligned_cols=70 Identities=14% Similarity=0.226 Sum_probs=53.7
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
.+||.|||++-+..+++.+.+. ++.+..+.|+.+..++.. ...++..+|+|+|. .+ . .++|+..+
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~-~-~Gidi~~v 100 (212)
T 3eaq_A 33 RAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VA-A-RGLDIPQV 100 (212)
T ss_dssp CEEEECSSHHHHHHHHHHHHHH-----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TT-T-CSSSCCCB
T ss_pred eEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hh-h-cCCCCccC
Confidence 3799999999999998887765 567888999877655443 33456789999995 33 3 57999999
Q ss_pred eEEEE
Q 030094 78 EILVL 82 (183)
Q Consensus 78 ~~lVv 82 (183)
.++|.
T Consensus 101 ~~Vi~ 105 (212)
T 3eaq_A 101 DLVVH 105 (212)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 98874
No 87
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=95.63 E-value=0.062 Score=38.56 Aligned_cols=71 Identities=18% Similarity=0.228 Sum_probs=53.7
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||.|+|++-|..+++.+.+. +..+..+.|+.+..+... ....+..+|+|+|. .+ . .++|+..+.
T Consensus 37 ~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~-~Gid~~~~~ 104 (175)
T 2rb4_A 37 AIIFCQTRRNAKWLTVEMIQD-----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VC-A-RGIDVKQVT 104 (175)
T ss_dssp EEEECSCHHHHHHHHHHHHTT-----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SC-C-TTTCCTTEE
T ss_pred EEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----ch-h-cCCCcccCC
Confidence 799999999999988877764 567888888877554433 34456789999995 22 2 578999999
Q ss_pred EEEEcc
Q 030094 79 ILVLDE 84 (183)
Q Consensus 79 ~lVvDE 84 (183)
++|.-+
T Consensus 105 ~Vi~~d 110 (175)
T 2rb4_A 105 IVVNFD 110 (175)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 988533
No 88
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=95.48 E-value=0.0038 Score=54.89 Aligned_cols=57 Identities=21% Similarity=0.263 Sum_probs=36.5
Q ss_pred eCcHHHHHHHHhcCCcCCCCceEEEEcccchhhcc--chHHHH----HHHHHh------------------CCCCCeEEE
Q 030094 57 GTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDM--GFQKQI----SYIISR------------------LPKLRRTGL 112 (183)
Q Consensus 57 ~TP~~l~~~l~~~~~~~l~~l~~lVvDEad~ll~~--~~~~~l----~~i~~~------------------l~~~~Q~v~ 112 (183)
+||++|.+++.. + .++|+||+|.+++. ++.... ..+.+. .++.+|+++
T Consensus 314 ~tp~~LlDyl~~-~-------~llVlDEah~~~~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~ 385 (664)
T 1c4o_A 314 EPPYTLLDYFPE-D-------FLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVF 385 (664)
T ss_dssp SCCCCGGGGSCT-T-------CEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSSCCCHHHHHHTCSEEEE
T ss_pred CCchHHHHHHhh-c-------cEEEEecccccHHHHHHHHHHHHHHHHHHHHccccchhhhhcCcccHHHHHhhcCCEEE
Confidence 789988888754 2 28999999998742 111111 111110 124689999
Q ss_pred EeecCChHH
Q 030094 113 FSATQTEAV 121 (183)
Q Consensus 113 ~SAT~~~~v 121 (183)
||||.++..
T Consensus 386 ~SAT~~~~~ 394 (664)
T 1c4o_A 386 VSATPGPFE 394 (664)
T ss_dssp EESSCCHHH
T ss_pred EecCCCHHH
Confidence 999998654
No 89
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=95.13 E-value=0.16 Score=41.00 Aligned_cols=69 Identities=10% Similarity=0.159 Sum_probs=53.6
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||.|+|++-|..+++.+.+. ++.+..+.|+.+.+++.. ...++..+|+|+|. .+. .++|+.++.
T Consensus 279 ~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~--~Gidip~v~ 346 (417)
T 2i4i_A 279 TLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA--RGLDISNVK 346 (417)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHH--TTSCCCCEE
T ss_pred EEEEECCHHHHHHHHHHHHHC-----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh--cCCCcccCC
Confidence 799999999999998887764 567888888877554433 34456789999994 454 479999999
Q ss_pred EEEE
Q 030094 79 ILVL 82 (183)
Q Consensus 79 ~lVv 82 (183)
++|.
T Consensus 347 ~Vi~ 350 (417)
T 2i4i_A 347 HVIN 350 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8885
No 90
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=95.09 E-value=0.35 Score=34.56 Aligned_cols=73 Identities=8% Similarity=0.153 Sum_probs=54.5
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
.+||.|+|++-+..+++.+... ++.+..+.|+.+..+... ...++..+|+|+|. .+ . .++|+..+
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~-~-~Gldi~~~ 100 (172)
T 1t5i_A 33 QVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LF-G-RGMDIERV 100 (172)
T ss_dssp SEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----CC-S-TTCCGGGC
T ss_pred cEEEEECCHHHHHHHHHHHHhc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----ch-h-cCcchhhC
Confidence 3799999999999998887764 567888888876554433 34456789999996 22 2 57899999
Q ss_pred eEEEEccc
Q 030094 78 EILVLDEA 85 (183)
Q Consensus 78 ~~lVvDEa 85 (183)
.++|.-+.
T Consensus 101 ~~Vi~~d~ 108 (172)
T 1t5i_A 101 NIAFNYDM 108 (172)
T ss_dssp SEEEESSC
T ss_pred CEEEEECC
Confidence 99886443
No 91
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=95.02 E-value=0.12 Score=37.52 Aligned_cols=71 Identities=10% Similarity=0.161 Sum_probs=45.6
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHH---HHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKA---DVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
.+||.|+|++-|..+.+.+... ++.+..+.|+.+..+ .......+..+|+|+|. .+. .++|+.++
T Consensus 48 k~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~--~Gldi~~~ 115 (185)
T 2jgn_A 48 LTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA--RGLDISNV 115 (185)
T ss_dssp CEEEEESCHHHHHHHHHHHHHT-----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC-------------CCCSB
T ss_pred eEEEEECCHHHHHHHHHHHHHc-----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hhh--cCCCcccC
Confidence 3799999999999998887764 567888888765433 23344457789999995 333 47888899
Q ss_pred eEEEEc
Q 030094 78 EILVLD 83 (183)
Q Consensus 78 ~~lVvD 83 (183)
.++|.-
T Consensus 116 ~~VI~~ 121 (185)
T 2jgn_A 116 KHVINF 121 (185)
T ss_dssp SEEEES
T ss_pred CEEEEe
Confidence 988863
No 92
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.69 E-value=0.89 Score=36.00 Aligned_cols=75 Identities=16% Similarity=0.289 Sum_probs=56.7
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||.|++++-|..+++.+++. +..+..+.|+.+..++.. ...++..+|+|+|. .+ . .++|+.++.
T Consensus 246 ~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~-~Gidip~~~ 313 (395)
T 3pey_A 246 SIIFVATKKTANVLYGKLKSE-----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VL-A-RGIDIPTVS 313 (395)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GG-S-SSCCCTTEE
T ss_pred EEEEeCCHHHHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh-h-cCCCcccCC
Confidence 689999999999998888765 567788888876544433 34456789999995 33 2 689999999
Q ss_pred EEEEcccchh
Q 030094 79 ILVLDEADRL 88 (183)
Q Consensus 79 ~lVvDEad~l 88 (183)
++|.-+...+
T Consensus 314 ~Vi~~~~p~~ 323 (395)
T 3pey_A 314 MVVNYDLPTL 323 (395)
T ss_dssp EEEESSCCBC
T ss_pred EEEEcCCCCC
Confidence 9997666543
No 93
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=94.30 E-value=0.2 Score=39.52 Aligned_cols=70 Identities=14% Similarity=0.225 Sum_probs=52.6
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
.+||.|+|++-+..+++.+... ++.+..++|+.+..++.. ...++..+|+|||. .. . .++|+..+
T Consensus 30 ~~LVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va-~-~Gidi~~v 97 (300)
T 3i32_A 30 RAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VA-A-RGLDIPQV 97 (300)
T ss_dssp SEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TT-T-CSTTCCCC
T ss_pred CEEEEECCHHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hh-h-cCccccce
Confidence 3799999999999888776653 677888999876554443 33456789999995 33 2 57899999
Q ss_pred eEEEE
Q 030094 78 EILVL 82 (183)
Q Consensus 78 ~~lVv 82 (183)
.++|.
T Consensus 98 ~~VI~ 102 (300)
T 3i32_A 98 DLVVH 102 (300)
T ss_dssp SEEEE
T ss_pred eEEEE
Confidence 98874
No 94
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=94.27 E-value=0.95 Score=39.60 Aligned_cols=75 Identities=13% Similarity=0.297 Sum_probs=58.2
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHH---HHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~---l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||.|+|+.-|..+.+.+... ++++..+.|+.+..++... ...+..+|+|||- .+. .++|+..++
T Consensus 448 vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l~--~GlDip~v~ 515 (661)
T 2d7d_A 448 VLVTTLTKKMSEDLTDYLKEI-----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLR--EGLDIPEVS 515 (661)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CCS--TTCCCTTEE
T ss_pred EEEEECCHHHHHHHHHHHHhc-----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hhh--CCcccCCCC
Confidence 789999999999988877765 5677778887665444433 4456789999995 333 589999999
Q ss_pred EEEEcccchh
Q 030094 79 ILVLDEADRL 88 (183)
Q Consensus 79 ~lVvDEad~l 88 (183)
++|+-++|..
T Consensus 516 lVi~~d~d~~ 525 (661)
T 2d7d_A 516 LVAILDADKE 525 (661)
T ss_dssp EEEETTTTCC
T ss_pred EEEEeCcccc
Confidence 9999999874
No 95
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.17 E-value=0.26 Score=38.78 Aligned_cols=72 Identities=17% Similarity=0.303 Sum_probs=53.8
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||.|+|++-+..+++.+++. +..+..+.|+.+..++.. ...++..+|+|+|. .+.. ++|+.++.
T Consensus 241 ~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~--Gid~~~~~ 308 (367)
T 1hv8_A 241 GLVFCKTKRDTKELASMLRDI-----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSR--GIDVNDLN 308 (367)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHH--HCCCSCCS
T ss_pred EEEEECCHHHHHHHHHHHHhc-----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc--CCCcccCC
Confidence 689999999999998888775 567888888876544433 34456789999995 4443 68888899
Q ss_pred EEEEccc
Q 030094 79 ILVLDEA 85 (183)
Q Consensus 79 ~lVvDEa 85 (183)
++|.-+.
T Consensus 309 ~Vi~~~~ 315 (367)
T 1hv8_A 309 CVINYHL 315 (367)
T ss_dssp EEEESSC
T ss_pred EEEEecC
Confidence 8886443
No 96
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=94.11 E-value=0.27 Score=41.67 Aligned_cols=75 Identities=15% Similarity=0.283 Sum_probs=57.4
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||.|+|+.-|..+++.+.+.... ++.+..+.|+.+..++.. ...++..+|+|||. .+. .++|+.++.
T Consensus 342 ~iVF~~s~~~~~~l~~~L~~~~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~--~GiDip~v~ 412 (563)
T 3i5x_A 342 AIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGA--RGMDFPNVH 412 (563)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGT--SSCCCTTCC
T ss_pred EEEEcCcHHHHHHHHHHHHHhccC--CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hhh--cCCCcccCC
Confidence 799999999999999998886432 677888888876544433 34457799999996 333 589999999
Q ss_pred EEEEccc
Q 030094 79 ILVLDEA 85 (183)
Q Consensus 79 ~lVvDEa 85 (183)
++|.-..
T Consensus 413 ~VI~~~~ 419 (563)
T 3i5x_A 413 EVLQIGV 419 (563)
T ss_dssp EEEEESC
T ss_pred EEEEECC
Confidence 9886554
No 97
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=94.08 E-value=0.23 Score=39.85 Aligned_cols=71 Identities=18% Similarity=0.247 Sum_probs=54.1
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||.|+|++-|..+++.+.+. +..+..+.|+.+..++.. ...++..+|+|||. .+. .++|+.++.
T Consensus 269 ~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidip~~~ 336 (412)
T 3fht_A 269 AMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCA--RGIDVEQVS 336 (412)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGT--SSCCCTTEE
T ss_pred EEEEeCCHHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----ccc--cCCCccCCC
Confidence 689999999999999888775 567788888876554433 34456789999995 333 589999999
Q ss_pred EEEEcc
Q 030094 79 ILVLDE 84 (183)
Q Consensus 79 ~lVvDE 84 (183)
++|.-.
T Consensus 337 ~Vi~~~ 342 (412)
T 3fht_A 337 VVINFD 342 (412)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 988533
No 98
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=94.03 E-value=0.26 Score=40.55 Aligned_cols=70 Identities=11% Similarity=0.164 Sum_probs=53.8
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||.|+|++-|..+++.+.+. ++.+..+.|+....++.. ...++..+|+|||. .+ . .++|+.++.
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~-~-rGlDi~~v~ 370 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEK-----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VA-S-RGLDIKNIK 370 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GG-T-SSCCCTTCC
T ss_pred EEEEEeCcHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hh-h-CCCCcccCC
Confidence 689999999999998877764 567888888876554433 34456789999996 33 3 589999999
Q ss_pred EEEEc
Q 030094 79 ILVLD 83 (183)
Q Consensus 79 ~lVvD 83 (183)
++|.-
T Consensus 371 ~VI~~ 375 (434)
T 2db3_A 371 HVINY 375 (434)
T ss_dssp EEEES
T ss_pred EEEEE
Confidence 98853
No 99
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=93.92 E-value=0.3 Score=41.72 Aligned_cols=76 Identities=16% Similarity=0.287 Sum_probs=57.8
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHH---HHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~---~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||.|+|++-|..+++.+.+... .++.+..+.|+.+..++. .....+..+|+|||. .+. .++|+.++.
T Consensus 291 ~iVF~~t~~~~~~l~~~L~~~~~--~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~--~GiDip~v~ 361 (579)
T 3sqw_A 291 AIIFAPTVKFTSFLCSILKNEFK--KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGA--RGMDFPNVH 361 (579)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHT--TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGT--SSCCCTTCC
T ss_pred EEEECCcHHHHHHHHHHHHHhhc--CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhh--cCCCcccCC
Confidence 79999999999999999888643 267788888887655443 344457799999995 333 589999999
Q ss_pred EEEEcccc
Q 030094 79 ILVLDEAD 86 (183)
Q Consensus 79 ~lVvDEad 86 (183)
++|.-..-
T Consensus 362 ~VI~~~~p 369 (579)
T 3sqw_A 362 EVLQIGVP 369 (579)
T ss_dssp EEEEESCC
T ss_pred EEEEcCCC
Confidence 98865543
No 100
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=93.85 E-value=0.098 Score=43.43 Aligned_cols=67 Identities=12% Similarity=0.135 Sum_probs=46.5
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
+++|+|||++-|..+++.+++. ++++..+.|. ...+......++..+|+|||. .+. .++|+. +.++
T Consensus 179 ~~lVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~-~R~~~~~~F~~g~~~vLVaT~-----v~e--~GiDip-v~~V 244 (440)
T 1yks_A 179 PTAWFLPSIRAANVMAASLRKA-----GKSVVVLNRK-TFEREYPTIKQKKPDFILATD-----IAE--MGANLC-VERV 244 (440)
T ss_dssp CEEEECSCHHHHHHHHHHHHHT-----TCCEEECCSS-SCC--------CCCSEEEESS-----STT--CCTTCC-CSEE
T ss_pred CEEEEeCCHHHHHHHHHHHHHc-----CCCEEEecch-hHHHHHhhhcCCCceEEEECC-----hhh--eeeccC-ceEE
Confidence 4799999999999998887775 5678888873 344444555567899999996 343 578888 8887
Q ss_pred E
Q 030094 81 V 81 (183)
Q Consensus 81 V 81 (183)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 6
No 101
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=93.62 E-value=1.4 Score=38.58 Aligned_cols=75 Identities=11% Similarity=0.205 Sum_probs=57.7
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHH---HHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~---l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||.|+|+.-|..+.+.+... ++++..+.|+.+..++... ...+..+|+|||- .+. .++|+..++
T Consensus 442 vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l~--~GlDip~v~ 509 (664)
T 1c4o_A 442 TLVTVLTVRMAEELTSFLVEH-----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LLR--EGLDIPEVS 509 (664)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CCC--TTCCCTTEE
T ss_pred EEEEECCHHHHHHHHHHHHhc-----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hhh--cCccCCCCC
Confidence 789999999999988877765 5677778887665444433 4456789999995 333 589999999
Q ss_pred EEEEcccchh
Q 030094 79 ILVLDEADRL 88 (183)
Q Consensus 79 ~lVvDEad~l 88 (183)
++|+=++|..
T Consensus 510 lVI~~d~d~~ 519 (664)
T 1c4o_A 510 LVAILDADKE 519 (664)
T ss_dssp EEEETTTTSC
T ss_pred EEEEeCCccc
Confidence 9999888764
No 102
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=93.38 E-value=0.4 Score=38.19 Aligned_cols=73 Identities=8% Similarity=0.155 Sum_probs=54.9
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||.|+|++-|..+++.+.+. ++.+..+.|+.+..++.. ...++..+|+|+|. .+. .++|+..+.
T Consensus 253 ~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~--~Gidi~~~~ 320 (391)
T 1xti_A 253 VVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFG--RGMDIERVN 320 (391)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-----CCS--SCBCCTTEE
T ss_pred EEEEeCcHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-----hhh--cCCCcccCC
Confidence 689999999999998887764 567888888876544433 34456789999995 232 579999999
Q ss_pred EEEEcccc
Q 030094 79 ILVLDEAD 86 (183)
Q Consensus 79 ~lVvDEad 86 (183)
++|.-+..
T Consensus 321 ~Vi~~~~p 328 (391)
T 1xti_A 321 IAFNYDMP 328 (391)
T ss_dssp EEEESSCC
T ss_pred EEEEeCCC
Confidence 99875543
No 103
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=93.34 E-value=0.38 Score=38.75 Aligned_cols=71 Identities=13% Similarity=0.196 Sum_probs=53.5
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||.|+|++-+..+++.+... ++.+..+.|+.+..++.. ...++..+|+|+|. .+. .++|+.++.
T Consensus 279 ~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidi~~v~ 346 (410)
T 2j0s_A 279 AVIFCNTKRKVDWLTEKMREA-----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VWA--RGLDVPQVS 346 (410)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GGS--SSCCCTTEE
T ss_pred EEEEEcCHHHHHHHHHHHHhC-----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhh--CcCCcccCC
Confidence 689999999999988877764 567888888876544333 34456789999996 332 589999999
Q ss_pred EEEEcc
Q 030094 79 ILVLDE 84 (183)
Q Consensus 79 ~lVvDE 84 (183)
++|.-+
T Consensus 347 ~Vi~~~ 352 (410)
T 2j0s_A 347 LIINYD 352 (410)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 988533
No 104
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=93.33 E-value=0.39 Score=38.49 Aligned_cols=71 Identities=6% Similarity=0.127 Sum_probs=53.7
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||.|+|++-+..+++.+... +..+..+.|+.+..++.. ...++..+|+|+|. .+. .++|+..+.
T Consensus 261 ~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~--~Gidip~~~ 328 (400)
T 1s2m_A 261 AIIFCNSTNRVELLAKKITDL-----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LLT--RGIDIQAVN 328 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CSS--SSCCCTTEE
T ss_pred EEEEEecHHHHHHHHHHHHhc-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----ccc--cCCCccCCC
Confidence 689999999999998888775 567888888876554433 34456789999995 332 579999999
Q ss_pred EEEEcc
Q 030094 79 ILVLDE 84 (183)
Q Consensus 79 ~lVvDE 84 (183)
++|.-+
T Consensus 329 ~Vi~~~ 334 (400)
T 1s2m_A 329 VVINFD 334 (400)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 888543
No 105
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=93.09 E-value=0.37 Score=40.85 Aligned_cols=71 Identities=14% Similarity=0.202 Sum_probs=54.0
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHH---HHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~---~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||.|+|++-+.++++.+.+. ++.+....|+.+.++.. .....+..+|+|||. .+ . .++|+.+++
T Consensus 239 ~IVf~~sr~~~e~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~-----a~-~-~GiD~p~v~ 306 (523)
T 1oyw_A 239 GIIYCNSRAKVEDTAARLQSK-----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV-----AF-G-MGINKPNVR 306 (523)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT-----TS-C-TTTCCTTCC
T ss_pred EEEEeCCHHHHHHHHHHHHHC-----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----hh-h-CCCCccCcc
Confidence 689999999999998888764 56788888887754433 344456799999996 23 2 578999999
Q ss_pred EEEEcc
Q 030094 79 ILVLDE 84 (183)
Q Consensus 79 ~lVvDE 84 (183)
++|.-.
T Consensus 307 ~VI~~~ 312 (523)
T 1oyw_A 307 FVVHFD 312 (523)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 988543
No 106
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=92.93 E-value=0.39 Score=44.80 Aligned_cols=92 Identities=15% Similarity=0.268 Sum_probs=65.9
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
+++|+||+++-+..+++.+++. .|+.++..+.|+.+..+... ...++..+|+|||. .+. .++|+.++
T Consensus 814 qvlvf~~~v~~~~~l~~~L~~~---~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~-----v~e--~GiDip~v 883 (1151)
T 2eyq_A 814 QVYYLYNDVENIQKAAERLAEL---VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIE--TGIDIPTA 883 (1151)
T ss_dssp EEEEECCCSSCHHHHHHHHHHH---CTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-----TTG--GGSCCTTE
T ss_pred eEEEEECCHHHHHHHHHHHHHh---CCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC-----cce--eeecccCC
Confidence 3789999999998888877765 46788999999876544433 34456799999995 444 48999999
Q ss_pred eEEEEcccchhhccchHHHHHHHHHhCCC
Q 030094 78 EILVLDEADRLLDMGFQKQISYIISRLPK 106 (183)
Q Consensus 78 ~~lVvDEad~ll~~~~~~~l~~i~~~l~~ 106 (183)
.++|+..+|.. +.. .+.....+.++
T Consensus 884 ~~VIi~~~~~~---~l~-~l~Qr~GRvgR 908 (1151)
T 2eyq_A 884 NTIIIERADHF---GLA-QLHQLRGRVGR 908 (1151)
T ss_dssp EEEEETTTTSS---CHH-HHHHHHTTCCB
T ss_pred cEEEEeCCCCC---CHH-HHHHHHhccCc
Confidence 99999888763 222 33344445443
No 107
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=92.88 E-value=0.41 Score=41.36 Aligned_cols=71 Identities=13% Similarity=0.164 Sum_probs=54.2
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||.|+|+.-|.++++.+... ++.+..+.|+.+..++.. ....+..+|+|+|- .+ . .++|..+++
T Consensus 270 ~IVf~~sr~~~e~la~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~-----a~-~-~GID~p~V~ 337 (591)
T 2v1x_A 270 GIIYCFSQKDSEQVTVSLQNL-----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV-----AF-G-MGIDKPDVR 337 (591)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT-----TS-C-TTCCCSCEE
T ss_pred eEEEeCcHHHHHHHHHHHHHC-----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----hh-h-cCCCccccc
Confidence 689999999999999888764 677888899877554433 34456789999995 23 2 578999999
Q ss_pred EEEEcc
Q 030094 79 ILVLDE 84 (183)
Q Consensus 79 ~lVvDE 84 (183)
++|.-.
T Consensus 338 ~VI~~~ 343 (591)
T 2v1x_A 338 FVIHHS 343 (591)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 988433
No 108
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=92.43 E-value=0.21 Score=43.86 Aligned_cols=67 Identities=15% Similarity=0.145 Sum_probs=49.2
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.+||+|||++-+..+++.+++. ++++..+.|+ ..........++..+|+|||- .+. .++|+. +.++
T Consensus 412 ~~lVF~~s~~~~e~la~~L~~~-----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaTd-----v~e--~GIDip-v~~V 477 (673)
T 2wv9_A 412 KTVWFVASVKMSNEIAQCLQRA-----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITTD-----ISE--MGANFG-ASRV 477 (673)
T ss_dssp CEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSS-SHHHHGGGGGTCCCSEEEECG-----GGG--TTCCCC-CSEE
T ss_pred CEEEEECCHHHHHHHHHHHHhC-----CCeEEEeChH-HHHHHHHHHHCCCceEEEECc-----hhh--cceeeC-CcEE
Confidence 4799999999999888877664 5678888884 333334444456789999995 444 478887 8776
Q ss_pred E
Q 030094 81 V 81 (183)
Q Consensus 81 V 81 (183)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 6
No 109
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=92.39 E-value=0.28 Score=40.53 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=48.6
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
+++|+|||++-|..+++.+++. +.++..+.|+ ...+......++..+|+|||- .+. .++|+. +..+
T Consensus 173 ~~lVF~~~~~~~~~l~~~L~~~-----~~~v~~lhg~-~r~~~~~~f~~g~~~vLVaT~-----v~e--~GiDip-~~~V 238 (431)
T 2v6i_A 173 RTVWFVHSIKQGAEIGTCLQKA-----GKKVLYLNRK-TFESEYPKCKSEKWDFVITTD-----ISE--MGANFK-ADRV 238 (431)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTT-THHHHTTHHHHSCCSEEEECG-----GGG--TSCCCC-CSEE
T ss_pred CEEEEeCCHHHHHHHHHHHHHc-----CCeEEEeCCc-cHHHHHHhhcCCCCeEEEECc-----hHH--cCcccC-CcEE
Confidence 4799999999999998887775 5678888876 334444455567899999995 444 467775 5554
No 110
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=91.37 E-value=0.45 Score=42.49 Aligned_cols=74 Identities=14% Similarity=0.094 Sum_probs=55.4
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhh------hCCCceEEEEEcCcchHHHHHHHH--------hcCCcEEEeCcHHHHHHHH
Q 030094 2 GMIISPTRELSSQIYHVAQPFIS------TLPDVKSVLLVGGVEVKADVKKIE--------EEGANLLIGTPGRLYDIME 67 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~------~~~~~~~~~~~g~~~~~~~~~~l~--------~~~~~IiV~TP~~l~~~l~ 67 (183)
+||.+|+++-+.++++.+.+... ..+++.+..++|+.+..++...+. .+...|||||. .+.
T Consensus 306 iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~-----iae 380 (773)
T 2xau_A 306 ILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN-----IAE 380 (773)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----HHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----HHH
Confidence 69999999999999998876332 224788999999988766654432 23568999995 454
Q ss_pred hcCCcCCCCceEEEE
Q 030094 68 RMDVLDFRNLEILVL 82 (183)
Q Consensus 68 ~~~~~~l~~l~~lVv 82 (183)
. ++|+..+.++|-
T Consensus 381 ~--GidIp~v~~VId 393 (773)
T 2xau_A 381 T--SLTIDGIVYVVD 393 (773)
T ss_dssp H--TCCCTTEEEEEE
T ss_pred h--CcCcCCeEEEEe
Confidence 4 789999987773
No 111
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=90.65 E-value=0.037 Score=39.60 Aligned_cols=71 Identities=14% Similarity=0.220 Sum_probs=49.9
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHH---HHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~---~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||.|+|++-|..+.+.+... ++.+..+.|+.+..+.. .....+..+|+|+|. .+. .++|+..+.
T Consensus 33 ~iVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~--~Gid~~~~~ 100 (170)
T 2yjt_D 33 SIVFVRKRERVHELANWLREA-----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAA--RGIDIPDVS 100 (170)
Confidence 689999999999888877764 56677777776543332 233345688999994 333 478888888
Q ss_pred EEEEcc
Q 030094 79 ILVLDE 84 (183)
Q Consensus 79 ~lVvDE 84 (183)
++|.-+
T Consensus 101 ~Vi~~~ 106 (170)
T 2yjt_D 101 HVFNFD 106 (170)
Confidence 877533
No 112
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=90.68 E-value=0.42 Score=39.64 Aligned_cols=67 Identities=13% Similarity=0.141 Sum_probs=48.3
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.+||.|||++-|.++++.+++. ++++..+.|... ........++..+|+|||. .+. .++|+.. .++
T Consensus 190 ~~lVF~~s~~~a~~l~~~L~~~-----g~~~~~lh~~~~-~~~~~~f~~g~~~vLVaT~-----v~~--~GiDip~-~~V 255 (451)
T 2jlq_A 190 KTVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTTD-----ISE--MGANFRA-GRV 255 (451)
T ss_dssp CEEEECSSHHHHHHHHHHHHTT-----TCCEEEECTTTH-HHHGGGGGSSCCSEEEECG-----GGG--SSCCCCC-SEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHc-----CCeEEECCHHHH-HHHHHhhccCCceEEEECC-----HHH--hCcCCCC-CEE
Confidence 3799999999999988887664 566777776544 3333344456789999995 443 5788888 666
Q ss_pred E
Q 030094 81 V 81 (183)
Q Consensus 81 V 81 (183)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 5
No 113
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=90.56 E-value=1.2 Score=36.02 Aligned_cols=73 Identities=21% Similarity=0.332 Sum_probs=51.8
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEc--------CcchHHH---HHHHHhcCCcEEEeCcHHHHHHHHhcC
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVG--------GVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMD 70 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g--------~~~~~~~---~~~l~~~~~~IiV~TP~~l~~~l~~~~ 70 (183)
+||.|++++-+..+++.+... ++++..+.| +.+.+++ .+....+.++|+|+|. .+. .
T Consensus 364 ~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~-----~~~--~ 431 (494)
T 1wp9_A 364 IIVFTNYRETAKKIVNELVKD-----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-----VGE--E 431 (494)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-----GGG--G
T ss_pred EEEEEccHHHHHHHHHHHHHc-----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC-----ccc--c
Confidence 799999999999998888775 567788888 4443322 3344456789999994 233 5
Q ss_pred CcCCCCceEEEEcccc
Q 030094 71 VLDFRNLEILVLDEAD 86 (183)
Q Consensus 71 ~~~l~~l~~lVvDEad 86 (183)
++|+..+.++|.-+..
T Consensus 432 Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 432 GLDVPEVDLVVFYEPV 447 (494)
T ss_dssp GGGSTTCCEEEESSCC
T ss_pred CCCchhCCEEEEeCCC
Confidence 7999999999865543
No 114
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=90.36 E-value=0.78 Score=39.83 Aligned_cols=67 Identities=13% Similarity=0.156 Sum_probs=49.0
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.+||.|+|++-|..+++.+++. ++++..+.|. ...+..+...++..+|+|||. .+. .++|+. +.++
T Consensus 357 ~~LVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~-~R~~~l~~F~~g~~~VLVaTd-----v~~--rGiDi~-v~~V 422 (618)
T 2whx_A 357 KTVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRK-TFDTEYPKTKLTDWDFVVTTD-----ISE--MGANFR-AGRV 422 (618)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTT-THHHHTTHHHHSCCSEEEECG-----GGG--TTCCCC-CSEE
T ss_pred CEEEEECChhHHHHHHHHHHHc-----CCcEEEEChH-HHHHHHHhhcCCCcEEEEECc-----HHH--cCcccC-ceEE
Confidence 3799999999999998888775 5677777774 333444455567899999996 444 478885 7776
Q ss_pred E
Q 030094 81 V 81 (183)
Q Consensus 81 V 81 (183)
|
T Consensus 423 I 423 (618)
T 2whx_A 423 I 423 (618)
T ss_dssp E
T ss_pred E
Confidence 3
No 115
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=90.23 E-value=0.84 Score=40.14 Aligned_cols=74 Identities=12% Similarity=0.200 Sum_probs=54.9
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchH---HHHHHHHh--cCCcEEEeCcHHHHHHHHhcCCcCCCC
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVK---ADVKKIEE--EGANLLIGTPGRLYDIMERMDVLDFRN 76 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~---~~~~~l~~--~~~~IiV~TP~~l~~~l~~~~~~~l~~ 76 (183)
.+|+|+|++-+.++.+.+.+. +..+..++|+.+.. +..+...+ +..+|+|||- .+. .++|+ +
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~-----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~e--~GlDi-~ 389 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR-----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AIG--MGLNL-S 389 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GGG--SSCCC-C
T ss_pred CEEEEcCHHHHHHHHHHHHhc-----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HHH--CCcCc-C
Confidence 467899999888777777663 67889999998765 34444444 5589999995 443 57999 8
Q ss_pred ceEEEEcccchh
Q 030094 77 LEILVLDEADRL 88 (183)
Q Consensus 77 l~~lVvDEad~l 88 (183)
++.+|.-.....
T Consensus 390 v~~VI~~~~~k~ 401 (677)
T 3rc3_A 390 IRRIIFYSLIKP 401 (677)
T ss_dssp BSEEEESCSBC-
T ss_pred ccEEEECCcccc
Confidence 999998887654
No 116
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=89.34 E-value=6.2 Score=32.69 Aligned_cols=74 Identities=14% Similarity=0.225 Sum_probs=50.4
Q ss_pred EEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHH---HHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceE
Q 030094 3 MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEI 79 (183)
Q Consensus 3 lIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~---~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~ 79 (183)
+|++.+.+-+..+.+.+.+. +.++..+.|+.+..+.. ....++..+|+|||+. .+.. ++|+.++..
T Consensus 351 ~ivf~~~~~~~~l~~~L~~~-----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~----~~~~--GiDip~v~~ 419 (510)
T 2oca_A 351 FVMFKHVSHGKAIFDLIKNE-----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYG----VFST--GISVKNLHH 419 (510)
T ss_dssp EEEESSHHHHHHHHHHHHTT-----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHH----HHHH--SCCCCSEEE
T ss_pred EEEEecHHHHHHHHHHHHHc-----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcC----hhhc--ccccccCcE
Confidence 45666666666665555543 23788888877654432 3344567899999963 4544 789999999
Q ss_pred EEEcccch
Q 030094 80 LVLDEADR 87 (183)
Q Consensus 80 lVvDEad~ 87 (183)
+|+..++.
T Consensus 420 vi~~~~~~ 427 (510)
T 2oca_A 420 VVLAHGVK 427 (510)
T ss_dssp EEESSCCC
T ss_pred EEEeCCCC
Confidence 99988874
No 117
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=89.23 E-value=1.1 Score=34.58 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=47.3
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||.++|++-+..+++.+. ++..+.|+.+..++.. ...++..+|+|+|. .+. .++|+..+.
T Consensus 223 ~lvf~~~~~~~~~l~~~l~---------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~--~Gid~~~~~ 286 (337)
T 2z0m_A 223 VIVFVRTRNRVAKLVRLFD---------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-----VAS--RGLDIPLVE 286 (337)
T ss_dssp EEEECSCHHHHHHHHTTCT---------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-----HHH--TTCCCCCBS
T ss_pred EEEEEcCHHHHHHHHHHhh---------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-----ccc--cCCCccCCC
Confidence 6899999998887655332 3556677765444333 34456789999994 454 579999999
Q ss_pred EEEEccc
Q 030094 79 ILVLDEA 85 (183)
Q Consensus 79 ~lVvDEa 85 (183)
++|.-..
T Consensus 287 ~Vi~~~~ 293 (337)
T 2z0m_A 287 KVINFDA 293 (337)
T ss_dssp EEEESSC
T ss_pred EEEEecC
Confidence 9886544
No 118
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=88.24 E-value=1.2 Score=35.90 Aligned_cols=70 Identities=16% Similarity=0.192 Sum_probs=50.6
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEE-EEEcCcchHHHHHHHHhcCCcEEEe----CcHHHHHHHHhcCCcCCC
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSV-LLVGGVEVKADVKKIEEEGANLLIG----TPGRLYDIMERMDVLDFR 75 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~-~~~g~~~~~~~~~~l~~~~~~IiV~----TP~~l~~~l~~~~~~~l~ 75 (183)
.+||.|+|++-|..+++.+.+. ++++. .+.|. .. + .....++..+|+|| |. .+. .++|+.
T Consensus 254 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~h~~-~r-~-~~~f~~g~~~vLvat~s~T~-----~~~--~GiDip 318 (414)
T 3oiy_A 254 GILIFAQTEEEGKELYEYLKRF-----KFNVGETWSEF-EK-N-FEDFKVGKINILIGVQAYYG-----KLT--RGVDLP 318 (414)
T ss_dssp SEEEEESSHHHHHHHHHHHHHT-----TCCEEESSSCH-HH-H-HHHHHTTSCSEEEEECCTTC-----CCC--CCCCCT
T ss_pred CEEEEECCHHHHHHHHHHHHHc-----CCceehhhcCc-ch-H-HHHHhCCCCeEEEEecCcCc-----hhh--ccCccc
Confidence 3799999999999998888774 55665 44443 22 2 56666678999999 74 232 579999
Q ss_pred C-ceEEEEccc
Q 030094 76 N-LEILVLDEA 85 (183)
Q Consensus 76 ~-l~~lVvDEa 85 (183)
+ +.++|.-+.
T Consensus 319 ~~v~~VI~~~~ 329 (414)
T 3oiy_A 319 ERIKYVIFWGT 329 (414)
T ss_dssp TTCCEEEEESC
T ss_pred cccCEEEEECC
Confidence 8 999885444
No 119
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=88.08 E-value=0.66 Score=40.75 Aligned_cols=63 Identities=10% Similarity=0.178 Sum_probs=48.0
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
+||.|||++-+.++++.+++. ++++..+.|+.+..+. .+.+.+|+|+|. .+.. ++|+. ++++|
T Consensus 399 vLVFv~Tr~~ae~la~~L~~~-----g~~v~~lHG~l~q~er----~~~~~~VLVATd-----Vaer--GIDId-V~~VI 461 (666)
T 3o8b_A 399 HLIFCHSKKKCDELAAKLSGL-----GINAVAYYRGLDVSVI----PTIGDVVVVATD-----ALMT--GYTGD-FDSVI 461 (666)
T ss_dssp EEEECSCHHHHHHHHHHHHTT-----TCCEEEECTTSCGGGS----CSSSCEEEEECT-----THHH--HCCCC-BSEEE
T ss_pred EEEEeCCHHHHHHHHHHHHhC-----CCcEEEecCCCCHHHH----HhCCCcEEEECC-----hHHc--cCCCC-CcEEE
Confidence 789999999999998877764 6788889988765432 245679999995 4554 67775 88776
No 120
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=87.85 E-value=0.37 Score=41.85 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=31.6
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCc
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGV 38 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~ 38 (183)
++|++||++++.|+.+.+..+.... ++++..+.|+.
T Consensus 54 vli~t~T~~l~~Qi~~el~~l~~~~-~~~~~~l~gr~ 89 (620)
T 4a15_A 54 VLYLVRTNSQEEQVIKELRSLSSTM-KIRAIPMQGRV 89 (620)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHS-CCCEEECCCHH
T ss_pred EEEECCCHHHHHHHHHHHHHHhhcc-CeEEEEEECCC
Confidence 6899999999999999999998776 78888877754
No 121
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=87.68 E-value=0.47 Score=38.07 Aligned_cols=70 Identities=14% Similarity=0.212 Sum_probs=45.1
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||.|+|++-+..+++.+.+. ++.+..+.|+.+..++.. ...++..+|+|+|. .+. .++|+.++.
T Consensus 283 ~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidip~v~ 350 (414)
T 3eiq_A 283 AVIFINTRRKVDWLTEKMHAR-----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD-----LLA--RGIDVQQVS 350 (414)
T ss_dssp CEEECSCHHHHHHHHHHHHTT-----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECS-----SCC----CCGGGCS
T ss_pred EEEEeCCHHHHHHHHHHHHhc-----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC-----ccc--cCCCccCCC
Confidence 689999999999888877654 567788888876554433 33345688999996 232 578888888
Q ss_pred EEEEc
Q 030094 79 ILVLD 83 (183)
Q Consensus 79 ~lVvD 83 (183)
++|.-
T Consensus 351 ~Vi~~ 355 (414)
T 3eiq_A 351 LVINY 355 (414)
T ss_dssp CEEES
T ss_pred EEEEe
Confidence 88753
No 122
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=86.55 E-value=2.2 Score=35.58 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=14.4
Q ss_pred EEEEeCcHHHHHHHHHHH
Q 030094 2 GMIISPTRELSSQIYHVA 19 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~ 19 (183)
.+|++||++++..+.+.+
T Consensus 187 ~lVlTpT~~aa~~l~~kl 204 (446)
T 3vkw_A 187 DLILVPGRQAAEMIRRRA 204 (446)
T ss_dssp CEEEESCHHHHHHHHHHH
T ss_pred eEEEeCCHHHHHHHHHHh
Confidence 378999999998776654
No 123
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=85.87 E-value=0.15 Score=42.37 Aligned_cols=68 Identities=19% Similarity=0.281 Sum_probs=0.0
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||.|||+.-|..+++.+... +..+..+.|+.+..++.. ....+..+|+|||. .+. .++|+.++.
T Consensus 336 ~lvF~~s~~~~~~l~~~L~~~-----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~-----~~~--~GlDip~v~ 403 (479)
T 3fmp_B 336 AMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCA--RGIDVEQVS 403 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEeCcHHHHHHHHHHHHhC-----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc-----ccc--cCCccccCC
Confidence 689999999999888877765 456777777765443322 33346789999994 444 478988888
Q ss_pred EEE
Q 030094 79 ILV 81 (183)
Q Consensus 79 ~lV 81 (183)
++|
T Consensus 404 ~VI 406 (479)
T 3fmp_B 404 VVI 406 (479)
T ss_dssp ---
T ss_pred EEE
Confidence 886
No 124
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=85.14 E-value=1.7 Score=36.18 Aligned_cols=76 Identities=20% Similarity=0.303 Sum_probs=47.2
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEc--------CcchHHHH---HHHHh-cCCcEEEeCcHHHHHHHHhc
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVG--------GVEVKADV---KKIEE-EGANLLIGTPGRLYDIMERM 69 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g--------~~~~~~~~---~~l~~-~~~~IiV~TP~~l~~~l~~~ 69 (183)
+||.|++++-+..+.+.+...... +.+++..+.| +.+.+++. ..... +..+|+|||. .+ .
T Consensus 392 ~lVF~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~-----~~-~- 463 (555)
T 3tbk_A 392 TILFVKTRALVDALKKWIEENPAL-SFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATS-----VA-D- 463 (555)
T ss_dssp EEEECSSHHHHHHHHHHHHHCGGG-TTCCEEECCC--------------------------CCSEEEECC-----CT-T-
T ss_pred EEEEeCcHHHHHHHHHHHhhCcCc-CceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcc-----hh-h-
Confidence 799999999999999999886432 2456666655 33322222 23333 5689999996 33 2
Q ss_pred CCcCCCCceEEEEccc
Q 030094 70 DVLDFRNLEILVLDEA 85 (183)
Q Consensus 70 ~~~~l~~l~~lVvDEa 85 (183)
.++|+..+.++|.=+.
T Consensus 464 ~GlDlp~v~~VI~~d~ 479 (555)
T 3tbk_A 464 EGIDIAECNLVILYEY 479 (555)
T ss_dssp CCEETTSCSEEEEESC
T ss_pred cCCccccCCEEEEeCC
Confidence 5799999999886433
No 125
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=84.27 E-value=1.6 Score=40.54 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=53.3
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEE-EEEcCcchHHHHHHHHhcCCcEEEe----CcHHHHHHHHhcCCcCCC
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSV-LLVGGVEVKADVKKIEEEGANLLIG----TPGRLYDIMERMDVLDFR 75 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~-~~~g~~~~~~~~~~l~~~~~~IiV~----TP~~l~~~l~~~~~~~l~ 75 (183)
.+||.|||++-|..+++.+... ++++. .+.|. ..+ .....++..+|+|| | +.+. .++|+.
T Consensus 311 ~~LVF~~s~~~a~~l~~~L~~~-----g~~~~~~lhg~--rr~-l~~F~~G~~~VLVatas~T-----dvla--rGIDip 375 (1104)
T 4ddu_A 311 GILIFAQTEEEGKELYEYLKRF-----KFNVGETWSEF--EKN-FEDFKVGKINILIGVQAYY-----GKLT--RGVDLP 375 (1104)
T ss_dssp SEEEEESSSHHHHHHHHHHHHT-----TCCEEESSSSH--HHH-HHHHHHTSCSEEEEETTTH-----HHHC--CSCCCT
T ss_pred CEEEEECcHHHHHHHHHHHHhC-----CCCeeeEecCc--HHH-HHHHHCCCCCEEEEecCCC-----CeeE--ecCcCC
Confidence 4799999999999998888775 55665 55552 333 56666778999999 6 3454 589999
Q ss_pred C-ceEEEEcccch
Q 030094 76 N-LEILVLDEADR 87 (183)
Q Consensus 76 ~-l~~lVvDEad~ 87 (183)
+ ++++|.=+.-.
T Consensus 376 ~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 376 ERIKYVIFWGTPS 388 (1104)
T ss_dssp TTCCEEEEESCCE
T ss_pred CCCCEEEEECCCC
Confidence 9 99988766554
No 126
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=83.60 E-value=6.1 Score=36.51 Aligned_cols=117 Identities=10% Similarity=0.107 Sum_probs=70.6
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhh-------hCCCceEEEEEcCcc-----------------------------------
Q 030094 2 GMIISPTRELSSQIYHVAQPFIS-------TLPDVKSVLLVGGVE----------------------------------- 39 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~-------~~~~~~~~~~~g~~~----------------------------------- 39 (183)
|+|+|+|++-|...++.+.++.. ..++++++.+..+..
T Consensus 540 amVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dy 619 (1038)
T 2w00_A 540 AMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREY 619 (1038)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHH
Confidence 79999999999999999999862 223466655544321
Q ss_pred ------------------hHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEcccchhhccchHHHHHHHH
Q 030094 40 ------------------VKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYII 101 (183)
Q Consensus 40 ------------------~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEad~ll~~~~~~~l~~i~ 101 (183)
.++-.....++..+|+|+|- ++ . .++|...+..+.+|=- ++ ...-++.+-
T Consensus 620 n~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd-----~l-l-tGfDiP~l~tlylDkp---l~--~~~liQaIG 687 (1038)
T 2w00_A 620 NSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVG-----MF-L-TGFDAPTLNTLFVDKN---LR--YHGLMQAFS 687 (1038)
T ss_dssp HHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESS-----TT-S-SSCCCTTEEEEEEESC---CC--HHHHHHHHH
T ss_pred HHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcc-----hH-H-hCcCcccccEEEEccC---CC--ccceeehhh
Confidence 00111233456789999995 33 2 6899999998888743 21 233344444
Q ss_pred HhCC---C-C--CeEEEEeecCChHHHHHHHhhCCC
Q 030094 102 SRLP---K-L--RRTGLFSATQTEAVEELSKAGLRN 131 (183)
Q Consensus 102 ~~l~---~-~--~Q~v~~SAT~~~~v~~~~~~~~~~ 131 (183)
+... . + ..++-| .....++......|...
T Consensus 688 RtnR~~~~~K~~G~IVdf-~~~~~~l~~Al~~y~~~ 722 (1038)
T 2w00_A 688 RTNRIYDATKTFGNIVTF-RDLERSTIDAITLFGDK 722 (1038)
T ss_dssp TTCCCCCTTCCSEEEEES-SCCHHHHHHHHHHTSCS
T ss_pred ccCcCCCCCCCcEEEEEc-cccHHHHHHHHHHHhCC
Confidence 3332 1 1 224444 34666677777766553
No 127
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=83.57 E-value=3.9 Score=35.77 Aligned_cols=74 Identities=9% Similarity=0.149 Sum_probs=51.4
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhC-------------C---------------CceEEEEEcCcchHHHHH---HHHh
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTL-------------P---------------DVKSVLLVGGVEVKADVK---KIEE 49 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~-------------~---------------~~~~~~~~g~~~~~~~~~---~l~~ 49 (183)
.+||.||||+-+..+++.+.+..... . ...+...+|+.+..++.. ...+
T Consensus 239 ~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~ 318 (720)
T 2zj8_A 239 GALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRK 318 (720)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHT
T ss_pred CEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHC
Confidence 47999999999999988887643210 0 123778888877655543 3334
Q ss_pred cCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 50 EGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 50 ~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
+..+|+|||. .+. .++|+..+.++|
T Consensus 319 g~~~vlvaT~-----~l~--~Gvdip~~~~VI 343 (720)
T 2zj8_A 319 GIIKAVVATP-----TLS--AGINTPAFRVII 343 (720)
T ss_dssp TSSCEEEECS-----TTG--GGCCCCBSEEEE
T ss_pred CCCeEEEECc-----Hhh--ccCCCCceEEEE
Confidence 6789999996 333 478888887654
No 128
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=83.10 E-value=0.47 Score=41.22 Aligned_cols=74 Identities=23% Similarity=0.308 Sum_probs=47.7
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhh-CCCceEEEEEcC--------cchHHHHH---HHHhcCCcEEEeCcHHHHHHHHhc
Q 030094 2 GMIISPTRELSSQIYHVAQPFIST-LPDVKSVLLVGG--------VEVKADVK---KIEEEGANLLIGTPGRLYDIMERM 69 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~-~~~~~~~~~~g~--------~~~~~~~~---~l~~~~~~IiV~TP~~l~~~l~~~ 69 (183)
+||.|+|+..+..+.+.+...... ..++++..+.|+ .+..++.. ....+..+|+|||- .+ .
T Consensus 403 ~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~-----~~-~- 475 (699)
T 4gl2_A 403 GIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT-----VA-E- 475 (699)
T ss_dssp EEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC-----SC-C-
T ss_pred EEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cc-c-
Confidence 799999999999999988764110 115777888887 55444433 33345689999995 33 2
Q ss_pred CCcCCCCceEEEE
Q 030094 70 DVLDFRNLEILVL 82 (183)
Q Consensus 70 ~~~~l~~l~~lVv 82 (183)
.++|+..+.++|.
T Consensus 476 ~GIDip~v~~VI~ 488 (699)
T 4gl2_A 476 EGLDIKECNIVIR 488 (699)
T ss_dssp TTSCCCSCCCCEE
T ss_pred cCCccccCCEEEE
Confidence 5788888888873
No 129
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=82.41 E-value=4.8 Score=35.10 Aligned_cols=75 Identities=7% Similarity=0.145 Sum_probs=52.4
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhh--CC-----------------------------CceEEEEEcCcchHHHHHH---
Q 030094 1 MGMIISPTRELSSQIYHVAQPFIST--LP-----------------------------DVKSVLLVGGVEVKADVKK--- 46 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~--~~-----------------------------~~~~~~~~g~~~~~~~~~~--- 46 (183)
.+||.||||+-+..+.+.+.+.... ++ ...+..++|+.+..++...
T Consensus 254 ~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~ 333 (715)
T 2va8_A 254 QVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEG 333 (715)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHH
Confidence 4799999999999998888764321 00 1247788888776555442
Q ss_pred HHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEEE
Q 030094 47 IEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVL 82 (183)
Q Consensus 47 l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVv 82 (183)
..++..+|+|||. .+. .++|+..+.++|-
T Consensus 334 f~~g~~~vlvaT~-----~l~--~Gidip~~~~VI~ 362 (715)
T 2va8_A 334 FRQRKIKVIVATP-----TLA--AGVNLPARTVIIG 362 (715)
T ss_dssp HHTTCSCEEEECG-----GGG--GSSCCCBSEEEEC
T ss_pred HHcCCCeEEEECh-----HHh--cccCCCceEEEEe
Confidence 3346789999995 343 4789888887663
No 130
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=82.04 E-value=1.3 Score=31.99 Aligned_cols=40 Identities=20% Similarity=0.196 Sum_probs=33.0
Q ss_pred CceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEee
Q 030094 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (183)
Q Consensus 76 ~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SA 115 (183)
.-.++++||.+.-+|......+..+++.+.+..|+++.|-
T Consensus 86 ~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith 125 (173)
T 3kta_B 86 PAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITL 125 (173)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECS
T ss_pred CCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEe
Confidence 3479999999999998888888888888777788877764
No 131
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=81.95 E-value=0.38 Score=40.53 Aligned_cols=71 Identities=14% Similarity=0.205 Sum_probs=45.6
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcch---HHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEV---KADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~---~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
.+||.|++++-|..+++.+.+. +..+..+.|+... ........++..+|+|||. .+. .++|+.++
T Consensus 359 ~~LVF~~s~~~a~~l~~~L~~~-----~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~-----~l~--~GiDip~v 426 (508)
T 3fho_A 359 QSIIFCKKKDTAEEIARRMTAD-----GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN-----VIA--RGIDVSQV 426 (508)
T ss_dssp CEEEBCSSTTTTTHHHHHHTTT-----TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC------------CCCTTC
T ss_pred cEEEEECCHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC-----hhh--cCCCccCC
Confidence 3789999999999888777653 5566777776543 2333445567789999996 443 57999999
Q ss_pred eEEEEc
Q 030094 78 EILVLD 83 (183)
Q Consensus 78 ~~lVvD 83 (183)
.++|..
T Consensus 427 ~~VI~~ 432 (508)
T 3fho_A 427 NLVVNY 432 (508)
T ss_dssp CEEEC-
T ss_pred CEEEEE
Confidence 998853
No 132
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=81.93 E-value=4.5 Score=34.37 Aligned_cols=77 Identities=10% Similarity=0.125 Sum_probs=50.0
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhh---CCCceEEEEEcCcch--HHHHHHHHhcCCc---EEEeCcHHHHHHHHhcCCcC
Q 030094 2 GMIISPTRELSSQIYHVAQPFIST---LPDVKSVLLVGGVEV--KADVKKIEEEGAN---LLIGTPGRLYDIMERMDVLD 73 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~---~~~~~~~~~~g~~~~--~~~~~~l~~~~~~---IiV~TP~~l~~~l~~~~~~~ 73 (183)
+||+|+|++-|..+++.+.+.... ..+-.+..+.|.... ++......+...+ |+|+|- ++. .++|
T Consensus 442 ~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~-----~l~--~GiD 514 (590)
T 3h1t_A 442 TIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQ-----LLT--TGVD 514 (590)
T ss_dssp EEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESS-----TTT--TTCC
T ss_pred EEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECC-----hhh--cCcc
Confidence 799999999999999999876431 112235555665442 2223333332233 888874 343 5799
Q ss_pred CCCceEEEEccc
Q 030094 74 FRNLEILVLDEA 85 (183)
Q Consensus 74 l~~l~~lVvDEa 85 (183)
+..+..+|++..
T Consensus 515 ip~v~~Vi~~~~ 526 (590)
T 3h1t_A 515 APTCKNVVLARV 526 (590)
T ss_dssp CTTEEEEEEESC
T ss_pred chheeEEEEEec
Confidence 999999998655
No 133
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=80.80 E-value=1.2 Score=38.73 Aligned_cols=77 Identities=21% Similarity=0.286 Sum_probs=43.6
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEc--------CcchHHHHH---HHHh-cCCcEEEeCcHHHHHHHHhc
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVG--------GVEVKADVK---KIEE-EGANLLIGTPGRLYDIMERM 69 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g--------~~~~~~~~~---~l~~-~~~~IiV~TP~~l~~~l~~~ 69 (183)
+||.|+|++-|..+++.+.... ..+.+++..+.| +.+.+++.. .... +..+|+|||- .. .
T Consensus 401 ~IIF~~~~~~~~~l~~~L~~~~-~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~-----v~-~- 472 (696)
T 2ykg_A 401 TILFVKTRALVDALKNWIEGNP-KLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS-----VA-D- 472 (696)
T ss_dssp EEEECSCHHHHHHHHHHHHHCT-TCCSCCEEC-----------------------------CCSCSEEEE-----SS-C-
T ss_pred EEEEeCcHHHHHHHHHHHHhCC-CccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEec-----hh-h-
Confidence 7999999999999999888863 223477777765 444333332 3333 5689999995 22 2
Q ss_pred CCcCCCCceEEEEcccc
Q 030094 70 DVLDFRNLEILVLDEAD 86 (183)
Q Consensus 70 ~~~~l~~l~~lVvDEad 86 (183)
.++|+.++.++|.-+..
T Consensus 473 ~GiDip~v~~VI~~d~p 489 (696)
T 2ykg_A 473 EGIDIAQCNLVILYEYV 489 (696)
T ss_dssp CC---CCCSEEEEESCC
T ss_pred cCCcCccCCEEEEeCCC
Confidence 57999999998864443
No 134
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=80.19 E-value=1 Score=37.36 Aligned_cols=67 Identities=15% Similarity=0.117 Sum_probs=45.0
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
.+||.|||++-|..+++.+++. ++++..+.|... ........++..+|+|||- .+. .++|+.. .++
T Consensus 192 ~~LVF~~s~~~~~~l~~~L~~~-----g~~v~~lh~~~R-~~~~~~f~~g~~~iLVaT~-----v~~--~GiDip~-~~V 257 (459)
T 2z83_A 192 KTVWFVASVKMGNEIAMCLQRA-----GKKVIQLNRKSY-DTEYPKCKNGDWDFVITTD-----ISE--MGANFGA-SRV 257 (459)
T ss_dssp CEEEECSCHHHHHHHHHHHHHT-----TCCEEEESTTCC-CCCGGGSSSCCCSEEEESS-----CC-----CCCSC-SEE
T ss_pred CEEEEeCChHHHHHHHHHHHhc-----CCcEEecCHHHH-HHHHhhccCCCceEEEECC-----hHH--hCeecCC-CEE
Confidence 3799999999999998888775 567777777432 2222233346789999995 333 4688777 655
Q ss_pred E
Q 030094 81 V 81 (183)
Q Consensus 81 V 81 (183)
|
T Consensus 258 I 258 (459)
T 2z83_A 258 I 258 (459)
T ss_dssp E
T ss_pred E
Confidence 5
No 135
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=80.06 E-value=2 Score=35.81 Aligned_cols=76 Identities=22% Similarity=0.354 Sum_probs=35.4
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEc--------CcchHHHH---HHHHh-cCCcEEEeCcHHHHHHHHhc
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVG--------GVEVKADV---KKIEE-EGANLLIGTPGRLYDIMERM 69 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g--------~~~~~~~~---~~l~~-~~~~IiV~TP~~l~~~l~~~ 69 (183)
+||.|++++-+..+.+.+.+... .+.+++..+.| +.+.+++. ..... +..+|+|||. .+.
T Consensus 393 ~lVF~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~-----~~~-- 464 (556)
T 4a2p_A 393 TLLFAKTRALVSALKKCMEENPI-LNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----VAD-- 464 (556)
T ss_dssp EEEEESSHHHHHHHHHHHTTCSG-GGSCCEEC------------------------------CCEEEEEC----------
T ss_pred EEEEEccHHHHHHHHHHHHhCCC-cceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcC-----chh--
Confidence 79999999999999998877521 12445554444 33332222 23334 5689999995 333
Q ss_pred CCcCCCCceEEEEccc
Q 030094 70 DVLDFRNLEILVLDEA 85 (183)
Q Consensus 70 ~~~~l~~l~~lVvDEa 85 (183)
.++|+..+.++|.=+.
T Consensus 465 ~GiDip~v~~VI~~d~ 480 (556)
T 4a2p_A 465 EGIDIVQCNLVVLYEY 480 (556)
T ss_dssp --------CEEEEETC
T ss_pred cCCCchhCCEEEEeCC
Confidence 5799999999886444
No 136
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=79.97 E-value=0.35 Score=38.50 Aligned_cols=69 Identities=12% Similarity=0.209 Sum_probs=0.0
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHH---HHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCce
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLE 78 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~---~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~ 78 (183)
+||.|+|++-+..+++.++.. +..+..+.|+.+..++. +...++..+|+|+|. .+. .++|+..+.
T Consensus 262 ~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~--~Gldi~~~~ 329 (394)
T 1fuu_A 262 AVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLA--RGIDVQQVS 329 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEECCHHHHHHHHHHHHHc-----CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECC-----hhh--cCCCcccCC
Confidence 689999999999888877664 45667777765543332 233345678999995 343 478888888
Q ss_pred EEEE
Q 030094 79 ILVL 82 (183)
Q Consensus 79 ~lVv 82 (183)
++|.
T Consensus 330 ~Vi~ 333 (394)
T 1fuu_A 330 LVIN 333 (394)
T ss_dssp ----
T ss_pred EEEE
Confidence 8774
No 137
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.22 E-value=2.4 Score=33.28 Aligned_cols=43 Identities=14% Similarity=0.225 Sum_probs=30.5
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCC
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~ 118 (183)
.+-+++++||+|. ++......+..+++..++.+.+++.|....
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 3567999999999 565566777788887776666666655443
No 138
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=78.20 E-value=3.1 Score=38.39 Aligned_cols=75 Identities=23% Similarity=0.273 Sum_probs=49.8
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc-eE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL-EI 79 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l-~~ 79 (183)
.+||.|+|++-|..+++.++.. +++..+.|+.. .......++..+|+|||... .+.+. .++|+.++ ++
T Consensus 277 ~~LVF~~t~~~a~~l~~~L~~~------~~v~~lhg~~~--~~l~~F~~G~~~VLVaTas~-Tdv~~--rGIDip~VI~~ 345 (1054)
T 1gku_B 277 GGIIYARTGEEAEEIYESLKNK------FRIGIVTATKK--GDYEKFVEGEIDHLIGTAHY-YGTLV--RGLDLPERIRF 345 (1054)
T ss_dssp CEEEEESSHHHHHHHHHTTTTS------SCEEECTTSSS--HHHHHHHHTSCSEEEEECC---------CCSCCTTTCCE
T ss_pred CEEEEEcCHHHHHHHHHHHhhc------cCeeEEeccHH--HHHHHHHcCCCcEEEEecCC-CCeeE--eccccCCcccE
Confidence 3799999999988777655442 56777777763 44445556789999993100 03443 48999995 98
Q ss_pred EEEcccc
Q 030094 80 LVLDEAD 86 (183)
Q Consensus 80 lVvDEad 86 (183)
+|.-++.
T Consensus 346 VI~~~~P 352 (1054)
T 1gku_B 346 AVFVGCP 352 (1054)
T ss_dssp EEEESCC
T ss_pred EEEeCCC
Confidence 8876665
No 139
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=77.74 E-value=8.4 Score=35.18 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=54.2
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHH---HHHHHhcC--CcEEEeCcHHHHHHHHhcCCcCCCC
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKAD---VKKIEEEG--ANLLIGTPGRLYDIMERMDVLDFRN 76 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~--~~IiV~TP~~l~~~l~~~~~~~l~~ 76 (183)
+||+|++++-+..+.+.+... . ++++..+.|+.+..+. .....++. ++|+|+|. .+ . .++|+.+
T Consensus 506 ~iVF~~~~~~~~~l~~~L~~~---~-g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~-----v~-~-~GlDl~~ 574 (968)
T 3dmq_A 506 VLVICAKAATALQLEQVLRER---E-GIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE-----IG-S-EGRNFQF 574 (968)
T ss_dssp CCEECSSTHHHHHHHHHHHTT---T-CCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC-----CT-T-CSSCCTT
T ss_pred EEEEeCcHHHHHHHHHHHHHH---c-CCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc-----hh-h-cCCCccc
Confidence 689999999999888777642 2 6788889998764433 33333343 89999994 22 3 6899999
Q ss_pred ceEEEEcccc
Q 030094 77 LEILVLDEAD 86 (183)
Q Consensus 77 l~~lVvDEad 86 (183)
+..+|+-+.+
T Consensus 575 ~~~VI~~d~p 584 (968)
T 3dmq_A 575 ASHMVMFDLP 584 (968)
T ss_dssp CCEEECSSCC
T ss_pred CcEEEEecCC
Confidence 9999987765
No 140
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=77.54 E-value=8.8 Score=33.42 Aligned_cols=75 Identities=8% Similarity=0.102 Sum_probs=51.3
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhC-C------------------------CceEEEEEcCcchHHHHH---HHHhcCC
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTL-P------------------------DVKSVLLVGGVEVKADVK---KIEEEGA 52 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~-~------------------------~~~~~~~~g~~~~~~~~~---~l~~~~~ 52 (183)
.+||.||||+-+..+.+.+.+....+ + +..+....|+.+.+++.. ...++..
T Consensus 244 ~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~ 323 (702)
T 2p6r_A 244 GVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNI 323 (702)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCC
Confidence 47999999999999988887653210 0 123666788877655543 2334678
Q ss_pred cEEEeCcHHHHHHHHhcCCcCCCCceEEEE
Q 030094 53 NLLIGTPGRLYDIMERMDVLDFRNLEILVL 82 (183)
Q Consensus 53 ~IiV~TP~~l~~~l~~~~~~~l~~l~~lVv 82 (183)
+|+|||. .+. .++|+..+.++|-
T Consensus 324 ~vlvaT~-----~l~--~Gidip~~~~VI~ 346 (702)
T 2p6r_A 324 KVVVATP-----TLA--AGVNLPARRVIVR 346 (702)
T ss_dssp CEEEECS-----TTT--SSSCCCBSEEEEC
T ss_pred eEEEECc-----HHh--ccCCCCceEEEEc
Confidence 9999996 333 5789888887553
No 141
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=77.49 E-value=2 Score=38.12 Aligned_cols=76 Identities=21% Similarity=0.326 Sum_probs=39.4
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEE--------cCcchHHHH---HHHHh-cCCcEEEeCcHHHHHHHHhc
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLV--------GGVEVKADV---KKIEE-EGANLLIGTPGRLYDIMERM 69 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~--------g~~~~~~~~---~~l~~-~~~~IiV~TP~~l~~~l~~~ 69 (183)
+||.|+++..+..+.+.+++.. .++++++..+. |+.+..++. ..... +.++|+|||- .+.
T Consensus 634 vLIF~~~~~~~~~L~~~L~~~~-~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~-----~~~-- 705 (797)
T 4a2q_A 634 TLLFAKTRALVSALKKCMEENP-ILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----VAD-- 705 (797)
T ss_dssp EEEEESSHHHHHHHHHHHHTCS-TTCSCCCEEC----------------------------CCSEEEEEC-----C----
T ss_pred EEEEECcHHHHHHHHHHHHhCc-ccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcC-----chh--
Confidence 7999999999999999887742 12234444333 333333322 23333 5689999995 333
Q ss_pred CCcCCCCceEEEEccc
Q 030094 70 DVLDFRNLEILVLDEA 85 (183)
Q Consensus 70 ~~~~l~~l~~lVvDEa 85 (183)
.++|+..+.++|.=+.
T Consensus 706 ~GIDlp~v~~VI~yd~ 721 (797)
T 4a2q_A 706 EGIDIVQCNLVVLYEY 721 (797)
T ss_dssp -----CCCSEEEEESC
T ss_pred cCCCchhCCEEEEeCC
Confidence 5799999999886444
No 142
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=75.97 E-value=2.7 Score=38.25 Aligned_cols=76 Identities=22% Similarity=0.352 Sum_probs=40.6
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEc--------CcchHHHHH---HHHh-cCCcEEEeCcHHHHHHHHhc
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVG--------GVEVKADVK---KIEE-EGANLLIGTPGRLYDIMERM 69 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g--------~~~~~~~~~---~l~~-~~~~IiV~TP~~l~~~l~~~ 69 (183)
+||.++|+..+..+.+.+.+.. .++++++..+.| +.+..++.. .... +..+|+|||- .+.
T Consensus 634 vLIF~~t~~~ae~L~~~L~~~~-~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~-----~~~-- 705 (936)
T 4a2w_A 634 TLLFAKTRALVSALKKCMEENP-ILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----VAD-- 705 (936)
T ss_dssp EEEEESSHHHHHHHHHHHHHCS-TTSSCCCEEC----------------------------CCSEEEEEC-----C----
T ss_pred EEEEeCCHHHHHHHHHHHhhCc-cccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeC-----chh--
Confidence 7999999999999999988752 122444444433 333333322 3334 5689999995 333
Q ss_pred CCcCCCCceEEEEccc
Q 030094 70 DVLDFRNLEILVLDEA 85 (183)
Q Consensus 70 ~~~~l~~l~~lVvDEa 85 (183)
.++|+..+.++|.=+.
T Consensus 706 eGIDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 706 EGIDIVQCNLVVLYEY 721 (936)
T ss_dssp ----CCCCSEEEEESC
T ss_pred cCCcchhCCEEEEeCC
Confidence 4788888988886444
No 143
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=75.63 E-value=3.4 Score=34.80 Aligned_cols=36 Identities=25% Similarity=0.178 Sum_probs=28.2
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEE
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLF 113 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~ 113 (183)
..++++|+|||++| |......+..+++.+ .-|.++.
T Consensus 413 ~~~rlvvlDEA~km-D~~~~~~~~~l~~~l--glQliia 448 (483)
T 3euj_A 413 LPCRLLFLDQAARL-DAMSINTLFELCERL--DMQLLIA 448 (483)
T ss_dssp CCCCEEEESSGGGS-CHHHHHHHHHHHHHT--TCEEEEE
T ss_pred CceeEEEEeccccC-CHHHHHHHHHHHHHc--CCEEEEE
Confidence 58999999999776 445666777888877 6898864
No 144
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=75.25 E-value=0.49 Score=42.31 Aligned_cols=81 Identities=19% Similarity=0.330 Sum_probs=50.4
Q ss_pred CEEEEeCcHHHH-----HHHHHHHHHhhh-hCCCceEEEEEcCcch---HHHHHHHHhcCCcEEEeCcHHHHHHHHhcCC
Q 030094 1 MGMIISPTRELS-----SQIYHVAQPFIS-TLPDVKSVLLVGGVEV---KADVKKIEEEGANLLIGTPGRLYDIMERMDV 71 (183)
Q Consensus 1 ~alIl~PtreLa-----~Qi~~~~~~l~~-~~~~~~~~~~~g~~~~---~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~ 71 (183)
+++|+||+.+-. ..+.+....+.. .+++.++..+.|+.+. ........++..+|+|||. .+. .+
T Consensus 580 qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~-----vie--~G 652 (780)
T 1gm5_A 580 QAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTT-----VIE--VG 652 (780)
T ss_dssp CBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSS-----CCC--SC
T ss_pred cEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECC-----CCC--cc
Confidence 356788866432 123334444544 4457788888887543 3344455566789999995 333 58
Q ss_pred cCCCCceEEEEcccchh
Q 030094 72 LDFRNLEILVLDEADRL 88 (183)
Q Consensus 72 ~~l~~l~~lVvDEad~l 88 (183)
+|+.++.++|+..++..
T Consensus 653 IDiP~v~~VIi~d~~r~ 669 (780)
T 1gm5_A 653 IDVPRANVMVIENPERF 669 (780)
T ss_dssp SCCTTCCEEEBCSCSSS
T ss_pred ccCCCCCEEEEeCCCCC
Confidence 99999999999888763
No 145
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=73.81 E-value=16 Score=26.62 Aligned_cols=60 Identities=10% Similarity=0.114 Sum_probs=39.2
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcc-hHHHHHHHHhcCCcEEEeCcHHHHHHHHh
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVE-VKADVKKIEEEGANLLIGTPGRLYDIMER 68 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~~IiV~TP~~l~~~l~~ 68 (183)
.++++|..+|.....+.+..+ +..+....++.. .-+..+.+ ..++||+|+--+. ..++++
T Consensus 7 I~~iapy~~l~~~~~~i~~e~-----~~~i~i~~~~l~~~v~~a~~~-~~~~dVIISRGgt-a~~lr~ 67 (196)
T 2q5c_A 7 IALISQNENLLNLFPKLALEK-----NFIPITKTASLTRASKIAFGL-QDEVDAIISRGAT-SDYIKK 67 (196)
T ss_dssp EEEEESCHHHHHHHHHHHHHH-----TCEEEEEECCHHHHHHHHHHH-TTTCSEEEEEHHH-HHHHHT
T ss_pred EEEEEccHHHHHHHHHHHhhh-----CCceEEEECCHHHHHHHHHHh-cCCCeEEEECChH-HHHHHH
Confidence 378999999999887777765 234555566543 22333445 6799999987655 344444
No 146
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=71.58 E-value=1.2 Score=31.03 Aligned_cols=43 Identities=21% Similarity=0.206 Sum_probs=25.7
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCC-CCeEEEEeecCC
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLFSATQT 118 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~-~~Q~v~~SAT~~ 118 (183)
.+.+++++||.+.+.... ...+..+++.+.. ....+++++..+
T Consensus 82 ~~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 82 FEAEYLAVDQVEKLGNEE-QALLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp GGCSEEEEESTTCCCSHH-HHHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred hCCCEEEEeCccccChHH-HHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 456899999999864433 5556566555432 234255555543
No 147
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=69.50 E-value=24 Score=25.31 Aligned_cols=99 Identities=15% Similarity=0.188 Sum_probs=45.5
Q ss_pred HHHHHhhhhCCCceEEEEEcCcch--HHHH----HHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEcccchhhc
Q 030094 17 HVAQPFISTLPDVKSVLLVGGVEV--KADV----KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLD 90 (183)
Q Consensus 17 ~~~~~l~~~~~~~~~~~~~g~~~~--~~~~----~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEad~ll~ 90 (183)
+.+..+... +.-....++|.... ..-. ..+...+..++..+...+...+.. ..-.+..-.++++||+|.+..
T Consensus 41 ~~l~~~~~~-~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~vliiDe~~~~~~ 118 (242)
T 3bos_A 41 GALKSAASG-DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTA-LLEGLEQFDLICIDDVDAVAG 118 (242)
T ss_dssp HHHHHHHHT-CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGG-GGTTGGGSSEEEEETGGGGTT
T ss_pred HHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH-HHHhccCCCEEEEeccccccC
Confidence 334444332 23456777775432 1111 122223455665555443332211 001134557999999999864
Q ss_pred cc-hHHHHHHHHHhCCC-CCeEEEEeecC
Q 030094 91 MG-FQKQISYIISRLPK-LRRTGLFSATQ 117 (183)
Q Consensus 91 ~~-~~~~l~~i~~~l~~-~~Q~v~~SAT~ 117 (183)
.. ....+..+++.... ....++++++.
T Consensus 119 ~~~~~~~l~~~l~~~~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 119 HPLWEEAIFDLYNRVAEQKRGSLIVSASA 147 (242)
T ss_dssp CHHHHHHHHHHHHHHHHHCSCEEEEEESS
T ss_pred CHHHHHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 32 24444454444322 23324445543
No 148
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=69.10 E-value=8 Score=28.98 Aligned_cols=29 Identities=17% Similarity=0.376 Sum_probs=23.6
Q ss_pred eCcHHHHHHHHhcCCcCCCCceEEEEcccc
Q 030094 57 GTPGRLYDIMERMDVLDFRNLEILVLDEAD 86 (183)
Q Consensus 57 ~TP~~l~~~l~~~~~~~l~~l~~lVvDEad 86 (183)
+||..+.+.+.. ..++++++.++-+||--
T Consensus 43 stp~~~y~~L~~-~~idw~~v~~f~~DEr~ 71 (226)
T 3lwd_A 43 STPKPFFTSLAA-KALPWARVDVTLADERW 71 (226)
T ss_dssp STTHHHHHHHHT-SCSCGGGEEEEESEEES
T ss_pred CCHHHHHHHHHh-cCCCchhEEEEEeeecc
Confidence 367777777776 78999999999999953
No 149
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=68.11 E-value=14 Score=26.03 Aligned_cols=40 Identities=28% Similarity=0.245 Sum_probs=27.5
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEee
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SA 115 (183)
..-.++++||+|.+.. .....+..+++..+....+++.+.
T Consensus 101 ~~~~vliiDe~~~l~~-~~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTA-DAQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCH-HHHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCH-HHHHHHHHHHHhcCCCCeEEEEeC
Confidence 5567999999999854 345566677777666666655543
No 150
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=67.84 E-value=3 Score=36.13 Aligned_cols=40 Identities=20% Similarity=0.235 Sum_probs=26.3
Q ss_pred cCCcEEEeCcHHHHHHHHhcC-----CcCCCCceEEEEcccchhhc
Q 030094 50 EGANLLIGTPGRLYDIMERMD-----VLDFRNLEILVLDEADRLLD 90 (183)
Q Consensus 50 ~~~~IiV~TP~~l~~~l~~~~-----~~~l~~l~~lVvDEad~ll~ 90 (183)
..+||||++..-|.+..-+.. .++++ =..+|+||||.|.+
T Consensus 174 ~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~-~~ivI~DEAHNL~d 218 (620)
T 4a15_A 174 PDADIVIAPYAYFLNRSVAEKFLSHWGVSRN-QIVIILDEAHNLPD 218 (620)
T ss_dssp GGCSEEEEEHHHHTCHHHHHHHHHHHTCCGG-GEEEEETTGGGHHH
T ss_pred hcCCEEEeCchhhcCHHHHHHHHHhhccCcC-CeEEEEECCCchHH
Confidence 368999999876555432201 12222 35899999999965
No 151
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=67.10 E-value=52 Score=28.26 Aligned_cols=34 Identities=15% Similarity=0.092 Sum_probs=22.9
Q ss_pred CCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEcccchhh
Q 030094 51 GANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLL 89 (183)
Q Consensus 51 ~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEad~ll 89 (183)
..+||++|..... . ..+.-...+++|+|||.+..
T Consensus 319 ~~~vI~~T~~~~~----~-~~l~~~~fd~viIDEAsQ~~ 352 (624)
T 2gk6_A 319 NADVICCTCVGAG----D-PRLAKMQFRSILIDESTQAT 352 (624)
T ss_dssp TCSEEEEETGGGG----C-GGGTTCCCSEEEETTGGGSC
T ss_pred cCCEEEEcChhhc----c-hhhhcCCCCEEEEecccccC
Confidence 6899999975432 1 22333457899999997764
No 152
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae}
Probab=66.90 E-value=6.9 Score=29.39 Aligned_cols=28 Identities=25% Similarity=0.529 Sum_probs=22.9
Q ss_pred eCcHHHHHHHHhcCCcCCCCceEEEEccc
Q 030094 57 GTPGRLYDIMERMDVLDFRNLEILVLDEA 85 (183)
Q Consensus 57 ~TP~~l~~~l~~~~~~~l~~l~~lVvDEa 85 (183)
+||..+.+.+.. ..++++++.++-+||-
T Consensus 44 stp~~~y~~L~~-~~i~w~~v~~f~~DEr 71 (232)
T 3lhi_A 44 RSPIAFFNALSQ-KDLDWKNVGITLADER 71 (232)
T ss_dssp STTHHHHHHHHT-SCCCGGGEEEEESEEE
T ss_pred CCHHHHHHHHHh-cCCCchheEEEEeeec
Confidence 367777777776 7899999999999994
No 153
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=66.10 E-value=7.1 Score=28.72 Aligned_cols=53 Identities=13% Similarity=0.236 Sum_probs=39.6
Q ss_pred CCceEEEEcccchhhccch--HHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHh
Q 030094 75 RNLEILVLDEADRLLDMGF--QKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~--~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~ 127 (183)
...+++|+||+-..+..++ .+.+..++...|...-+|+.+--.++++.++++.
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~ 173 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADT 173 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSE
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcc
Confidence 5678999999977665543 5667777777777777888777778777777663
No 154
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=65.15 E-value=8 Score=33.15 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=28.0
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEe
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~S 114 (183)
....+++|+|||..+ + ...+..+++.++...++++++
T Consensus 277 ~~~~dvlIIDEasml-~---~~~~~~Ll~~~~~~~~lilvG 313 (574)
T 3e1s_A 277 PAPYDLLIVDEVSMM-G---DALMLSLLAAVPPGARVLLVG 313 (574)
T ss_dssp CCSCSEEEECCGGGC-C---HHHHHHHHTTSCTTCEEEEEE
T ss_pred cccCCEEEEcCccCC-C---HHHHHHHHHhCcCCCEEEEEe
Confidence 345689999999876 2 457777888888777887764
No 155
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=64.43 E-value=4.8 Score=31.24 Aligned_cols=41 Identities=15% Similarity=0.111 Sum_probs=27.7
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEee
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SA 115 (183)
..-+++++||+|.+........+..+++..+...++++.+.
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEES
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 36789999999998623345566666666555666666443
No 156
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica}
Probab=64.29 E-value=9.7 Score=28.63 Aligned_cols=28 Identities=25% Similarity=0.544 Sum_probs=23.2
Q ss_pred eCcHHHHHHHHhcCCcCCCCceEEEEccc
Q 030094 57 GTPGRLYDIMERMDVLDFRNLEILVLDEA 85 (183)
Q Consensus 57 ~TP~~l~~~l~~~~~~~l~~l~~lVvDEa 85 (183)
+||..+.+.+.. ..++++++.++-+||-
T Consensus 47 stp~~~y~~L~~-~~idw~~v~~f~~DEr 74 (233)
T 3nwp_A 47 STPLKLFQLLSM-KSIDWSDVYITLADER 74 (233)
T ss_dssp STTHHHHHHHHH-CCSCGGGEEEEESEEE
T ss_pred CCHHHHHHHHHh-cCCChhHeEEEeCeec
Confidence 367777777776 7899999999999994
No 157
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=62.62 E-value=53 Score=29.35 Aligned_cols=34 Identities=15% Similarity=0.092 Sum_probs=22.8
Q ss_pred CCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEcccchhh
Q 030094 51 GANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLL 89 (183)
Q Consensus 51 ~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEad~ll 89 (183)
..+||++|..... . ..+.-...+++|+|||-+..
T Consensus 495 ~a~VI~~T~~~~~----~-~~l~~~~fd~viIDEAsQ~~ 528 (800)
T 2wjy_A 495 NADVICCTCVGAG----D-PRLAKMQFRSILIDESTQAT 528 (800)
T ss_dssp HCSEEEEETGGGG----C-TTTTTCCCSEEEETTGGGSC
T ss_pred cCCEEEEchhhhC----C-hhhhcCCCCEEEEECCCCCC
Confidence 5789999975432 1 22333467899999997764
No 158
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=62.33 E-value=9.5 Score=27.30 Aligned_cols=38 Identities=13% Similarity=0.151 Sum_probs=23.3
Q ss_pred CceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEe
Q 030094 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (183)
Q Consensus 76 ~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~S 114 (183)
.-.++|+||+|.+-. .....+...++..+....+++.|
T Consensus 126 ~~~vlviDe~~~l~~-~~~~~l~~~l~~~~~~~~~i~~t 163 (250)
T 1njg_A 126 RFKVYLIDEVHMLSR-HSFNALLKTLEEPPEHVKFLLAT 163 (250)
T ss_dssp SSEEEEEETGGGSCH-HHHHHHHHHHHSCCTTEEEEEEE
T ss_pred CceEEEEECcccccH-HHHHHHHHHHhcCCCceEEEEEe
Confidence 346899999999743 34455555555554445555544
No 159
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=61.11 E-value=6.9 Score=31.50 Aligned_cols=39 Identities=21% Similarity=0.207 Sum_probs=32.7
Q ss_pred eEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeec
Q 030094 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (183)
Q Consensus 78 ~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT 116 (183)
.++++||.+.=++......+..+++.+.+..|+++.|.-
T Consensus 317 ~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~ 355 (415)
T 4aby_A 317 PSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHL 355 (415)
T ss_dssp SEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCc
Confidence 799999999999988888888888888767788776653
No 160
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=60.93 E-value=4.2 Score=28.60 Aligned_cols=46 Identities=24% Similarity=0.229 Sum_probs=26.5
Q ss_pred CCCceEEEEcccchh-hccchHHHHHHHHHhCCCCCeEEEEeecCCh
Q 030094 74 FRNLEILVLDEADRL-LDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (183)
Q Consensus 74 l~~l~~lVvDEad~l-l~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~ 119 (183)
+.+.+++++||.+.. ++......+..+++........+++++..++
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 345689999999853 3333445666666555322334445555443
No 161
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=60.45 E-value=6.4 Score=28.79 Aligned_cols=40 Identities=10% Similarity=0.104 Sum_probs=22.3
Q ss_pred ceEEEEcccchhhccc--hH---HHHHHHHHhCCCCCeEEEEeec
Q 030094 77 LEILVLDEADRLLDMG--FQ---KQISYIISRLPKLRRTGLFSAT 116 (183)
Q Consensus 77 l~~lVvDEad~ll~~~--~~---~~l~~i~~~l~~~~Q~v~~SAT 116 (183)
=.++|+||||.++... .. ..+..+...-.+..|+++++-.
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 3589999999996421 11 2222222222344578887765
No 162
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=59.59 E-value=12 Score=28.64 Aligned_cols=37 Identities=16% Similarity=0.020 Sum_probs=21.4
Q ss_pred eEEEEcccchhhcc--------chHHHHHHHHHhCCCCCeEEEEe
Q 030094 78 EILVLDEADRLLDM--------GFQKQISYIISRLPKLRRTGLFS 114 (183)
Q Consensus 78 ~~lVvDEad~ll~~--------~~~~~l~~i~~~l~~~~Q~v~~S 114 (183)
.++++||+|.+... .....+..+++..+....+++.+
T Consensus 132 ~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~ 176 (309)
T 3syl_A 132 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAG 176 (309)
T ss_dssp SEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEE
T ss_pred CEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 59999999998622 22344455555544444444433
No 163
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=59.45 E-value=59 Score=25.14 Aligned_cols=103 Identities=11% Similarity=0.134 Sum_probs=53.9
Q ss_pred HHHHHhhhhCCCceEEEEEcCcchH--HHHHHHHh-------cCCcEEEeCcH-------HHHHHHHhcCCc-CCCCceE
Q 030094 17 HVAQPFISTLPDVKSVLLVGGVEVK--ADVKKIEE-------EGANLLIGTPG-------RLYDIMERMDVL-DFRNLEI 79 (183)
Q Consensus 17 ~~~~~l~~~~~~~~~~~~~g~~~~~--~~~~~l~~-------~~~~IiV~TP~-------~l~~~l~~~~~~-~l~~l~~ 79 (183)
+.+++..+.- .....+++|..... .-...+.+ ..+|++.-.|. .+.++++..... ....-++
T Consensus 7 ~~L~~~i~~~-~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kv 85 (305)
T 2gno_A 7 ETLKRIIEKS-EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKY 85 (305)
T ss_dssp HHHHHHHHTC-SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEE
T ss_pred HHHHHHHHCC-CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceE
Confidence 3344444433 35677888866432 22222222 24688776653 144554431111 2356799
Q ss_pred EEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHH
Q 030094 80 LVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122 (183)
Q Consensus 80 lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~ 122 (183)
+|+||||.|-... .+.+...++.-|+.+-.++. ++-+..+.
T Consensus 86 viIdead~lt~~a-~naLLk~LEep~~~t~fIl~-t~~~~kl~ 126 (305)
T 2gno_A 86 VIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLN-TRRWHYLL 126 (305)
T ss_dssp EEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEE-ESCGGGSC
T ss_pred EEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEE-ECChHhCh
Confidence 9999999985433 34455556655545555554 34343333
No 164
>1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO hydrolase; HET: CIT; 1.55A {Thermotoga maritima} SCOP: c.124.1.1 PDB: 1pbt_A
Probab=59.42 E-value=11 Score=28.36 Aligned_cols=29 Identities=17% Similarity=0.377 Sum_probs=21.5
Q ss_pred eCcHHHHHHHHhcCCcCCCCceEEEEcccc
Q 030094 57 GTPGRLYDIMERMDVLDFRNLEILVLDEAD 86 (183)
Q Consensus 57 ~TP~~l~~~l~~~~~~~l~~l~~lVvDEad 86 (183)
+||..+.+.+.. ..++++++.++-+||-=
T Consensus 55 sTp~~ly~~L~~-~~i~w~~v~~f~~DEr~ 83 (232)
T 1vl1_A 55 RTPLPVYEKLAE-QKFPWNRIHFFLSDERY 83 (232)
T ss_dssp TTHHHHHHHHTT-SCCCGGGEEEEESEEES
T ss_pred ccHHHHHHHHHH-cCCChhHEEEEeCeEee
Confidence 356666666655 56888999999999863
No 165
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=59.30 E-value=10 Score=28.60 Aligned_cols=12 Identities=33% Similarity=0.642 Sum_probs=10.8
Q ss_pred eEEEEcccchhh
Q 030094 78 EILVLDEADRLL 89 (183)
Q Consensus 78 ~~lVvDEad~ll 89 (183)
.++++||+|.+.
T Consensus 112 ~vl~iDEid~l~ 123 (285)
T 3h4m_A 112 SIIFIDEIDAIA 123 (285)
T ss_dssp EEEEEETTHHHH
T ss_pred eEEEEECHHHhc
Confidence 589999999986
No 166
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=58.54 E-value=13 Score=28.86 Aligned_cols=39 Identities=23% Similarity=0.316 Sum_probs=26.4
Q ss_pred CceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEee
Q 030094 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (183)
Q Consensus 76 ~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SA 115 (183)
.-+++++||+|.+... ....+..+++..+....+++.+.
T Consensus 133 ~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp SCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEeC
Confidence 4579999999998543 35566667777666666665443
No 167
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=58.41 E-value=20 Score=30.01 Aligned_cols=59 Identities=12% Similarity=0.180 Sum_probs=37.5
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCc-----------c-hHHHH---HHHHhcCCcEEEeCcHHHHH
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGV-----------E-VKADV---KKIEEEGANLLIGTPGRLYD 64 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~-----------~-~~~~~---~~l~~~~~~IiV~TP~~l~~ 64 (183)
.|||+|+...|.|.++.++.+.. +- +..+.... . ...+. ..+......|+|+|...++.
T Consensus 42 ~lvv~~~~~~A~~l~~~l~~~~~---~~-v~~fp~~e~lpyd~~~p~~~~~~~Rl~~l~~L~~~~~~ivv~sv~al~~ 115 (483)
T 3hjh_A 42 VVLIAPDMQNALRLHDEISQFTD---QM-VMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQ 115 (483)
T ss_dssp EEEEESSHHHHHHHHHHHHHTCS---SC-EEECCCCCSCTTCSSCCCHHHHHHHHHHHHHGGGCCSSEEEEEHHHHHB
T ss_pred EEEEeCCHHHHHHHHHHHHhhCC---Cc-EEEEeCcccccccccCCChHHHHHHHHHHHHHHhCCCCEEEEEHHHHhh
Confidence 58999999999999999998853 22 43333220 0 11222 23334567799999877653
No 168
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=57.92 E-value=13 Score=27.90 Aligned_cols=46 Identities=24% Similarity=0.391 Sum_probs=25.8
Q ss_pred CCceEEEEcccchhhcc-----ch-HHHHHHHHHhCC----CCCeEEEEeecCChH
Q 030094 75 RNLEILVLDEADRLLDM-----GF-QKQISYIISRLP----KLRRTGLFSATQTEA 120 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~-----~~-~~~l~~i~~~l~----~~~Q~v~~SAT~~~~ 120 (183)
..-.++++||+|.+++. .+ ...+..+...+. ...+++++++|-.++
T Consensus 123 ~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~ 178 (272)
T 1d2n_A 123 SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKD 178 (272)
T ss_dssp SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHH
T ss_pred cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChh
Confidence 44679999999998532 11 222333333332 345666666665544
No 169
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=57.33 E-value=25 Score=26.66 Aligned_cols=39 Identities=26% Similarity=0.254 Sum_probs=26.5
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEe
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~S 114 (183)
..-+++++||+|.+... ....+..+++..+....+++.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 55689999999998533 3555666677666566655544
No 170
>1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str}
Probab=56.51 E-value=18 Score=27.04 Aligned_cols=64 Identities=19% Similarity=0.281 Sum_probs=36.9
Q ss_pred EEEeCcHH-HHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhc---CCcCCCCce
Q 030094 3 MIISPTRE-LSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM---DVLDFRNLE 78 (183)
Q Consensus 3 lIl~Ptre-La~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~---~~~~l~~l~ 78 (183)
+++.++.+ ++....+.+.+....- +--+..+.||.+ |..+.+.+... +.++++++.
T Consensus 4 ~~~~~~~~~l~~~aA~~i~~~i~~~-~~~~l~lsgGst-------------------p~~~~~~L~~~~~~~~~~w~~v~ 63 (238)
T 1y89_A 4 HKIFPTADAVVKSLADDMLAYSQQG-QPVHISLSGGST-------------------PKMLFKLLASQPYANDIQWKNLH 63 (238)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTTS-SCEEEEECCSHH-------------------HHHHHHHHTSTTHHHHSCGGGEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHHHhC-CCEEEEECCCcc-------------------HHHHHHHHHhhhhccCCChhHeE
Confidence 45667755 7777777666654431 223344445443 44444444321 237888999
Q ss_pred EEEEcccc
Q 030094 79 ILVLDEAD 86 (183)
Q Consensus 79 ~lVvDEad 86 (183)
++-+||-=
T Consensus 64 ~f~~DEr~ 71 (238)
T 1y89_A 64 FWWGDERC 71 (238)
T ss_dssp EEESEEES
T ss_pred EEeceecC
Confidence 99999863
No 171
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=56.46 E-value=8.9 Score=29.72 Aligned_cols=41 Identities=20% Similarity=0.231 Sum_probs=23.9
Q ss_pred CceEEEEcccchhhcc-chHHHHHHHHHhC-CCCCeEEEEeecC
Q 030094 76 NLEILVLDEADRLLDM-GFQKQISYIISRL-PKLRRTGLFSATQ 117 (183)
Q Consensus 76 ~l~~lVvDEad~ll~~-~~~~~l~~i~~~l-~~~~Q~v~~SAT~ 117 (183)
+..++++||+|.+... .....+..+++.. ....++++ +++-
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii-~~~~ 140 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIIL-ASDR 140 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEE-EESS
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEE-EecC
Confidence 3579999999998642 2344444555443 23455555 4453
No 172
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=56.17 E-value=1e+02 Score=27.53 Aligned_cols=21 Identities=5% Similarity=0.131 Sum_probs=17.7
Q ss_pred EEEEeCcHHHHHHHHHHHHHh
Q 030094 2 GMIISPTRELSSQIYHVAQPF 22 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l 22 (183)
.|+++||...|.++.+.+.+.
T Consensus 407 ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 407 ILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp EEEEESSHHHHHHHHHHHHHT
T ss_pred EEEEcCcHHHHHHHHHHHHhh
Confidence 589999999999888877664
No 173
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=55.24 E-value=13 Score=29.21 Aligned_cols=39 Identities=13% Similarity=0.074 Sum_probs=23.3
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEe
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~S 114 (183)
..-+++|+||||.|-.. ....+...++.-+...-.++.+
T Consensus 107 ~~~kvviIdead~l~~~-a~naLLk~lEep~~~~~~Il~t 145 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDA-AANALLKTLEEPPAETWFFLAT 145 (334)
T ss_dssp SSCEEEEESCGGGBCHH-HHHHHHHHHTSCCTTEEEEEEE
T ss_pred CCcEEEEECchhhcCHH-HHHHHHHHhcCCCCCeEEEEEe
Confidence 45789999999998543 2334444455444444444443
No 174
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=55.03 E-value=16 Score=29.13 Aligned_cols=38 Identities=18% Similarity=0.360 Sum_probs=31.0
Q ss_pred ceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEe
Q 030094 77 LEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (183)
Q Consensus 77 l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~S 114 (183)
..++++||.+.-+|......+..++..+....|+++.|
T Consensus 306 ~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~t 343 (371)
T 3auy_A 306 VECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIIT 343 (371)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEE
T ss_pred CCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEE
Confidence 67999999999999888888888888886667766544
No 175
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Probab=55.02 E-value=47 Score=24.40 Aligned_cols=60 Identities=25% Similarity=0.306 Sum_probs=36.9
Q ss_pred EEEeCcHH-HHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 3 MIISPTRE-LSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 3 lIl~Ptre-La~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
+++.++.+ ++....+.+.+..+.- +- +..+.|| .||..+.+.+.. ..++.+++.++-
T Consensus 4 ~~~~~~~~~l~~~aA~~l~~~i~~~-~~-~i~ls~G-------------------~T~~~~~~~L~~-~~~~~~~v~v~~ 61 (234)
T 2ri0_A 4 TIKVKNKTEGSKVAFRMLEEEITFG-AK-TLGLATG-------------------STPLELYKEIRE-SHLDFSDMVSIN 61 (234)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHTT-CC-EEEECCS-------------------STTHHHHHHHHT-SCCCCTTCEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHHHhC-CC-EEEEcCC-------------------CCHHHHHHHHHh-cCCChhheEEEe
Confidence 45666655 6666666666655432 22 3334443 356666666654 557888999999
Q ss_pred Ecc
Q 030094 82 LDE 84 (183)
Q Consensus 82 vDE 84 (183)
+||
T Consensus 62 ldE 64 (234)
T 2ri0_A 62 LDE 64 (234)
T ss_dssp SEE
T ss_pred Cee
Confidence 897
No 176
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=54.92 E-value=34 Score=31.33 Aligned_cols=76 Identities=8% Similarity=0.038 Sum_probs=48.7
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhh------------------hC----------------CCceEEEEEcCcchHHHHH--
Q 030094 2 GMIISPTRELSSQIYHVAQPFIS------------------TL----------------PDVKSVLLVGGVEVKADVK-- 45 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~------------------~~----------------~~~~~~~~~g~~~~~~~~~-- 45 (183)
+||.++||.-|.++...+....- .+ ....+....|+....++..
T Consensus 339 ~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~ 418 (997)
T 4a4z_A 339 MVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIE 418 (997)
T ss_dssp EEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHH
Confidence 78999999988887776644210 00 0124677888876544433
Q ss_pred -HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEccc
Q 030094 46 -KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEA 85 (183)
Q Consensus 46 -~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEa 85 (183)
....+..+|+|||- .+.. ++|+.. ..+|+...
T Consensus 419 ~~F~~G~~kVLvAT~-----~~a~--GIDiP~-~~VVi~~~ 451 (997)
T 4a4z_A 419 ILFSKGFIKVLFATE-----TFAM--GLNLPT-RTVIFSSI 451 (997)
T ss_dssp HHHHTTCCSEEEECT-----HHHH--SCCCCC-SEEEESCS
T ss_pred HHHHCCCCcEEEEch-----HhhC--CCCCCC-ceEEEecc
Confidence 33356789999996 5544 788888 56665433
No 177
>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition, fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis} PDB: 2bkv_A*
Probab=54.79 E-value=49 Score=24.42 Aligned_cols=83 Identities=23% Similarity=0.235 Sum_probs=44.5
Q ss_pred EEEeCcHH-HHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHh---cCCcCCCCce
Q 030094 3 MIISPTRE-LSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER---MDVLDFRNLE 78 (183)
Q Consensus 3 lIl~Ptre-La~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~---~~~~~l~~l~ 78 (183)
+++.++.+ ++....+.+.+..+.-+.. +..+.||. ||..+.+.+.. ...++.+++.
T Consensus 3 ~~~~~~~~~l~~~aA~~l~~~i~~~~~~-~i~lsgG~-------------------T~~~~~~~L~~~~~~~~~~~~~v~ 62 (242)
T 2bkx_A 3 VMECQTYEELSQIAARITADTIKEKPDA-VLGLATGG-------------------TPEGTYRQLIRLHQTENLSFQNIT 62 (242)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHCTTC-EEEECCSS-------------------TTHHHHHHHHHHHHHSCCCCTTCE
T ss_pred EEEeCCHHHHHHHHHHHHHHHHHHCCCe-EEEECCCC-------------------CHHHHHHHHHHHhhccCCChhheE
Confidence 56677755 6676766666654432122 33334433 45555554431 1467889999
Q ss_pred EEEEcc---cchh-hccchHHHHHHHHHhCC
Q 030094 79 ILVLDE---ADRL-LDMGFQKQISYIISRLP 105 (183)
Q Consensus 79 ~lVvDE---ad~l-l~~~~~~~l~~i~~~l~ 105 (183)
++-+|| ...- -+.++..-.+.+++.++
T Consensus 63 v~~lder~gv~~~~~~sn~~~~~~~l~~~~~ 93 (242)
T 2bkx_A 63 TVNLDEYAGLSSDDPNSYHFYMNDRFFQHID 93 (242)
T ss_dssp EEESEEETTCCTTSTTSHHHHHHHHTGGGSC
T ss_pred EEeCccccCCCCCchHHHHHHHHHHHhccCC
Confidence 999999 2211 11223333445666664
No 178
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=54.65 E-value=13 Score=30.51 Aligned_cols=41 Identities=20% Similarity=0.345 Sum_probs=25.8
Q ss_pred CceEEEEcccchhhcc-chHHHHHHHHHhC-CCCCeEEEEeec
Q 030094 76 NLEILVLDEADRLLDM-GFQKQISYIISRL-PKLRRTGLFSAT 116 (183)
Q Consensus 76 ~l~~lVvDEad~ll~~-~~~~~l~~i~~~l-~~~~Q~v~~SAT 116 (183)
+..++++||+|.+.+. .....+..+++.+ ....++++.|..
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 6789999999998753 2344555555443 344566665443
No 179
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=54.30 E-value=15 Score=28.61 Aligned_cols=39 Identities=26% Similarity=0.491 Sum_probs=27.6
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEe
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~S 114 (183)
..-+++|+||+|.|-. .....+..+++..+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~-~~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTN-AAQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCH-HHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCH-HHHHHHHHHHhcCCCCeEEEEEe
Confidence 4578999999999854 34556777777776666666543
No 180
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=53.72 E-value=45 Score=23.60 Aligned_cols=39 Identities=10% Similarity=0.037 Sum_probs=25.2
Q ss_pred CceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCC
Q 030094 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (183)
Q Consensus 76 ~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~ 118 (183)
...++++||++.+ +.++.+.+..+.+. +..+++++-+-+
T Consensus 76 ~~dvviIDE~Q~~-~~~~~~~l~~l~~~---~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 76 DTRGVFIDEVQFF-NPSLFEVVKDLLDR---GIDVFCAGLDLT 114 (184)
T ss_dssp TEEEEEECCGGGS-CTTHHHHHHHHHHT---TCEEEEEEESBC
T ss_pred CCCEEEEECcccC-CHHHHHHHHHHHHC---CCCEEEEeeccc
Confidence 5679999999885 33466666666553 455665555433
No 181
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=53.18 E-value=13 Score=29.31 Aligned_cols=40 Identities=8% Similarity=0.104 Sum_probs=23.2
Q ss_pred CceEEEEcccchhhccchHHHHHHHHHh--CC-CCCeEEEEeecCC
Q 030094 76 NLEILVLDEADRLLDMGFQKQISYIISR--LP-KLRRTGLFSATQT 118 (183)
Q Consensus 76 ~l~~lVvDEad~ll~~~~~~~l~~i~~~--l~-~~~Q~v~~SAT~~ 118 (183)
..-++++||+|.+.+.. .+..+++. .. ...-+++.++|+.
T Consensus 132 ~~~ii~lDE~d~l~~q~---~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 132 RKTLILIQNPENLLSEK---ILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp CEEEEEEECCSSSCCTH---HHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred CceEEEEecHHHhhcch---HHHHHHhcccccCCcEEEEEEecCcc
Confidence 34588999999998433 33333331 21 2234566677764
No 182
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=52.41 E-value=15 Score=28.64 Aligned_cols=39 Identities=13% Similarity=0.140 Sum_probs=24.2
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEe
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~S 114 (183)
..-+++++||+|.+-.. ....+...++..+....+++.+
T Consensus 118 ~~~~vliiDe~~~l~~~-~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSEEEEEECGGGSCHH-HHHHHHHHHHSCCSSEEEEEEE
T ss_pred CCeEEEEEECcchhcHH-HHHHHHHHHhcCCCceEEEEEe
Confidence 44579999999998533 3445555566555444444443
No 183
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=52.23 E-value=5.2 Score=27.68 Aligned_cols=13 Identities=15% Similarity=0.427 Sum_probs=11.3
Q ss_pred ceEEEEcccchhh
Q 030094 77 LEILVLDEADRLL 89 (183)
Q Consensus 77 l~~lVvDEad~ll 89 (183)
-.++++||+|.+.
T Consensus 116 ~~vl~iDe~~~l~ 128 (187)
T 2p65_A 116 QVVMFIDEIHTVV 128 (187)
T ss_dssp SEEEEETTGGGGS
T ss_pred ceEEEEeCHHHhc
Confidence 3689999999996
No 184
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=51.58 E-value=10 Score=27.41 Aligned_cols=64 Identities=14% Similarity=0.075 Sum_probs=36.7
Q ss_pred CCCceEEEEcccchh--hccchHHHHHHHHHhCCCCCeEEEEeecCChH-HHHHHHhhC--CCCeEEEEccC
Q 030094 74 FRNLEILVLDEADRL--LDMGFQKQISYIISRLPKLRRTGLFSATQTEA-VEELSKAGL--RNPVRVEVRAE 140 (183)
Q Consensus 74 l~~l~~lVvDEad~l--l~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~-v~~~~~~~~--~~~~~i~~~~~ 140 (183)
..+-+++++||++.+ .+..|.+.+..+++.. .-+++-+.|.+.+ -..+.+... .+...+.+..+
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~---~~~ilgti~vsh~~~~~~vd~i~~~~~~~i~~~~~~ 171 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP---GTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKE 171 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS---SCCEEEECCCCCSSCCTTHHHHHTTCCSEEEECCSS
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCC---CcEEEEEeecCCCCchHHHHHHeecCCcEEEEeChH
Confidence 455679999999888 4555777777777632 2244435665321 123444432 34456655544
No 185
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=51.32 E-value=22 Score=29.22 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=24.7
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEe
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~S 114 (183)
+...+++|+||++.+ + ...+..+.+.++...++++++
T Consensus 126 ~~~~~~iiiDE~~~~-~---~~~~~~l~~~~~~~~~~~~vG 162 (459)
T 3upu_A 126 LAKCRVLICDEVSMY-D---RKLFKILLSTIPPWCTIIGIG 162 (459)
T ss_dssp CSSCSEEEESCGGGC-C---HHHHHHHHHHSCTTCEEEEEE
T ss_pred ccCCCEEEEECchhC-C---HHHHHHHHHhccCCCEEEEEC
Confidence 456789999999865 2 345556666666555555554
No 186
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=50.48 E-value=30 Score=31.76 Aligned_cols=75 Identities=12% Similarity=0.048 Sum_probs=48.0
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhh------------------CC----------------CceEEEEEcCcchHHHHH--
Q 030094 2 GMIISPTRELSSQIYHVAQPFIST------------------LP----------------DVKSVLLVGGVEVKADVK-- 45 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~------------------~~----------------~~~~~~~~g~~~~~~~~~-- 45 (183)
+||.++||.-|.++.+.+....-. +. ...+....||....++..
T Consensus 346 ~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve 425 (1010)
T 2xgj_A 346 VIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIE 425 (1010)
T ss_dssp EEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHH
Confidence 799999999999888776552100 00 012677788876544332
Q ss_pred -HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEcc
Q 030094 46 -KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDE 84 (183)
Q Consensus 46 -~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDE 84 (183)
...++..+|+|||. .+. .++|+..+.+ |++.
T Consensus 426 ~~F~~G~ikVLVAT~-----~la--~GIDiP~~~v-VI~~ 457 (1010)
T 2xgj_A 426 ILFQEGFLKVLFATE-----TFS--IGLNMPAKTV-VFTS 457 (1010)
T ss_dssp HHHHTTCCSEEEEEG-----GGG--GSTTCCBSEE-EESC
T ss_pred HHHhcCCCcEEEEeh-----Hhh--ccCCCCCceE-EEeC
Confidence 33456789999995 333 4688887766 4443
No 187
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=50.26 E-value=34 Score=31.77 Aligned_cols=74 Identities=8% Similarity=-0.044 Sum_probs=46.6
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCC----------------------------------CceEEEEEcCcchHHHHH-
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLP----------------------------------DVKSVLLVGGVEVKADVK- 45 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~----------------------------------~~~~~~~~g~~~~~~~~~- 45 (183)
.+||.|+|+.-|.++...+..+.-..+ ...+..+.|+....++..
T Consensus 443 ~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v 522 (1108)
T 3l9o_A 443 PVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVI 522 (1108)
T ss_dssp CEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHH
T ss_pred CEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHH
Confidence 379999999999998887765422110 011677888876544433
Q ss_pred --HHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEE
Q 030094 46 --KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILV 81 (183)
Q Consensus 46 --~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lV 81 (183)
....+..+|+|||. .+. .++|+..+.++|
T Consensus 523 ~~~F~~G~ikVLVAT~-----vla--~GIDiP~v~~VI 553 (1108)
T 3l9o_A 523 EILFQEGFLKVLFATE-----TFS--IGLNMPAKTVVF 553 (1108)
T ss_dssp HHHHHHTCCCEEEEES-----CCC--SCCCC--CEEEE
T ss_pred HHHHhCCCCeEEEECc-----HHh--cCCCCCCceEEE
Confidence 23356789999995 222 467777777754
No 188
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=48.93 E-value=14 Score=28.87 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=32.1
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeec
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT 116 (183)
..-+++++||...-++......+..+++.+.+..|+++.|--
T Consensus 240 ~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~ 281 (322)
T 1e69_A 240 KPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHN 281 (322)
T ss_dssp SCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 345799999999999887777888887777556677766554
No 189
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=48.93 E-value=12 Score=28.42 Aligned_cols=38 Identities=21% Similarity=0.265 Sum_probs=25.6
Q ss_pred CceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEe
Q 030094 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (183)
Q Consensus 76 ~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~S 114 (183)
.-+++|+||+|.+... ....+..+++..+....+++.+
T Consensus 107 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG-AQQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHH-HHHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHH-HHHHHHHHHhccCCCceEEEEe
Confidence 4689999999998543 3445556666666666666654
No 190
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=48.66 E-value=1.1e+02 Score=24.79 Aligned_cols=97 Identities=10% Similarity=0.180 Sum_probs=51.1
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCC-ceEEE-EEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPD-VKSVL-LVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEI 79 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~-~~~~~-~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~ 79 (183)
+++++||++-|..+++.+..+....|. ++... -.+.... . ..+|..|.+.+.. -.-++. .+..+
T Consensus 211 v~~vA~t~~qA~~vf~~i~~mi~~~P~ll~~~~~~~~~~~I----~--f~nGs~i~~lsa~--~~slrG------~~~~~ 276 (385)
T 2o0j_A 211 VGILAHKGSMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSI----E--LDNGSSIGAYASS--PDAVRG------NSFAM 276 (385)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHSCTTTSCCEEEECSSEE----E--ETTSCEEEEEECS--HHHHHT------SCCSE
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHhChHhhhhhhccCCccEE----E--eCCCCEEEEEECC--CCCccC------CCCCE
Confidence 578999999999999988888876653 21110 0111110 0 1234555444321 122222 22468
Q ss_pred EEEcccchhhccchHHHHHHHHHhC--CCCCeEEEEe
Q 030094 80 LVLDEADRLLDMGFQKQISYIISRL--PKLRRTGLFS 114 (183)
Q Consensus 80 lVvDEad~ll~~~~~~~l~~i~~~l--~~~~Q~v~~S 114 (183)
+++||+|..-+ +...+..+...+ ..+.+++++|
T Consensus 277 viiDE~a~~~~--~~el~~al~~~ls~~~~~kiiiiS 311 (385)
T 2o0j_A 277 IYIEDCAFIPN--FHDSWLAIQPVISSGRRSKIIITT 311 (385)
T ss_dssp EEEESGGGSTT--HHHHHHHHHHHHHSTTCCEEEEEE
T ss_pred EEechhhhcCC--CHHHHHHHHHHhhcCCCCcEEEEe
Confidence 99999998743 122333333332 2345655554
No 191
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=48.23 E-value=16 Score=29.20 Aligned_cols=31 Identities=29% Similarity=0.237 Sum_probs=22.9
Q ss_pred CceEEEEcccchhhc---cchHHHHHHHHHhCCC
Q 030094 76 NLEILVLDEADRLLD---MGFQKQISYIISRLPK 106 (183)
Q Consensus 76 ~l~~lVvDEad~ll~---~~~~~~l~~i~~~l~~ 106 (183)
.-.++++||||.+++ ..+.+.+..+++...+
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk 295 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRK 295 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhh
Confidence 356899999999995 2356677777777654
No 192
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=47.23 E-value=64 Score=25.64 Aligned_cols=116 Identities=13% Similarity=0.164 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhhhhCCC--ceEEEEEcCc---chHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEcccc
Q 030094 12 SSQIYHVAQPFISTLPD--VKSVLLVGGV---EVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEAD 86 (183)
Q Consensus 12 a~Qi~~~~~~l~~~~~~--~~~~~~~g~~---~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEad 86 (183)
-....+-+++..+.+ + +.+..+-... ...+..+.+...++|+||++.....+.+.. -.-...+++++++|..-
T Consensus 43 ~~~~~~G~~~~~~~~-G~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~~g~~~~~~~~~-vA~~~Pdv~fv~id~~~ 120 (356)
T 3s99_A 43 TYQHDQARKELVEAL-GDKVETTFLENVAEGADAERSIKRIARAGNKLIFTTSFGYMDPTVK-VAKKFPDVKFEHATGYK 120 (356)
T ss_dssp HHHHHHHHHHHHHHH-TTTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEECSGGGHHHHHH-HHTTCTTSEEEEESCCC
T ss_pred HHHHHHHHHHHHHHh-CCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHH-HHHHCCCCEEEEEeccc
Confidence 344445555554443 3 6655544322 233445566678999999998777776654 22234567888887532
Q ss_pred h---hhccch-HHH---HH-HHHHhCCCCCeEEEEeecCChHHHHHHHhhC
Q 030094 87 R---LLDMGF-QKQ---IS-YIISRLPKLRRTGLFSATQTEAVEELSKAGL 129 (183)
Q Consensus 87 ~---ll~~~~-~~~---l~-~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~ 129 (183)
. +....+ ... +. .+...+.+...+-++++...+.+..+...|.
T Consensus 121 ~~~Nv~sv~~~~~eg~ylaG~~A~~~tk~~kIGfVgg~~~p~v~~~~~GF~ 171 (356)
T 3s99_A 121 TADNMSAYNARFYEGRYVQGVIAAKMSKKGIAGYIGSVPVPEVVQGINSFM 171 (356)
T ss_dssp CBTTEEEEEECHHHHHHHHHHHHHHHCSSCEEEEEECCCCHHHHHHHHHHH
T ss_pred cCCcEEEEEechhHHHHHHHHHHHHhcCCCEEEEECCCccHHHHHHHHHHH
Confidence 1 111111 011 11 1223445556666777766666666555543
No 193
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=47.09 E-value=80 Score=26.83 Aligned_cols=101 Identities=11% Similarity=0.207 Sum_probs=53.5
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCC-ceEEEE-EcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceE
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPD-VKSVLL-VGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEI 79 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~-~~~~~~-~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~ 79 (183)
++++.||++.|..+++.++.+....|. ++.... .+.... . ..+|..|.+.+-+ -.-++. . +..+
T Consensus 211 i~~va~t~~qA~~~~~~i~~~i~~~p~~~~~~~~~~~~~~i----~--~~nGs~i~~~s~~--~~~lrG-~-----~~~~ 276 (592)
T 3cpe_A 211 VGILAHKGSMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSI----E--LDNGSSIGAYASS--PDAVRG-N-----SFAM 276 (592)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHTTSCTTTSCCEEEECSSEE----E--ETTSCEEEEEECC--HHHHHH-S-----CCSE
T ss_pred EEEEECCHHHHHHHHHHHHHHHHhChHhhccccccCCccEE----E--ecCCCEEEEEeCC--CCCccC-C-----Ccce
Confidence 578999999999999989888876653 221111 111111 0 1235555544321 122233 1 2468
Q ss_pred EEEcccchhhccchHHHHHHHHHhCC--CCCeEEEEeecCCh
Q 030094 80 LVLDEADRLLDMGFQKQISYIISRLP--KLRRTGLFSATQTE 119 (183)
Q Consensus 80 lVvDEad~ll~~~~~~~l~~i~~~l~--~~~Q~v~~SAT~~~ 119 (183)
+++||++..-+ ..+....+...+. .+.+++++| |...
T Consensus 277 ~iiDE~~~~~~--~~~l~~~~~~~l~~~~~~~ii~is-TP~~ 315 (592)
T 3cpe_A 277 IYIEDCAFIPN--FHDSWLAIQPVISSGRRSKIIITT-TPNG 315 (592)
T ss_dssp EEEETGGGCTT--HHHHHHHHHHHHSSSSCCEEEEEE-CCCT
T ss_pred EEEehhccCCc--hhHHHHHHHHHhccCCCceEEEEe-CCCC
Confidence 99999998633 2233333433333 345555544 4443
No 194
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=46.84 E-value=35 Score=30.64 Aligned_cols=53 Identities=11% Similarity=0.016 Sum_probs=35.2
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHH-HhcCCcEEEeCc
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKI-EEEGANLLIGTP 59 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l-~~~~~~IiV~TP 59 (183)
+||.|.|++-+..+.+.+.+. ++....+.|+....+..... ....-.|+|||.
T Consensus 477 VLVFt~S~e~sE~Ls~~L~~~-----Gi~~~vLhgkq~~rE~~ii~~ag~~g~VtVATd 530 (822)
T 3jux_A 477 VLVGTTSIEKSELLSSMLKKK-----GIPHQVLNAKYHEKEAEIVAKAGQKGMVTIATN 530 (822)
T ss_dssp EEEEESSHHHHHHHHHHHHTT-----TCCCEEECSCHHHHHHHHHHHHHSTTCEEEEET
T ss_pred EEEEECCHHHHHHHHHHHHHC-----CCCEEEeeCCchHHHHHHHHhCCCCCeEEEEcc
Confidence 799999999999888877663 67777888874332221111 112347999985
No 195
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=46.42 E-value=25 Score=26.92 Aligned_cols=36 Identities=22% Similarity=0.132 Sum_probs=23.6
Q ss_pred eEEEEcccchhhc------cchHHHHHHHHHhCCCCCeEEEEe
Q 030094 78 EILVLDEADRLLD------MGFQKQISYIISRLPKLRRTGLFS 114 (183)
Q Consensus 78 ~~lVvDEad~ll~------~~~~~~l~~i~~~l~~~~Q~v~~S 114 (183)
-++|+||+|.+.+ ..+...+..+.+.. +...+++.+
T Consensus 130 ~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~il~g 171 (350)
T 2qen_A 130 FIVAFDEAQYLRFYGSRGGKELLALFAYAYDSL-PNLKIILTG 171 (350)
T ss_dssp EEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHC-TTEEEEEEE
T ss_pred EEEEEeCHHHHhccCccchhhHHHHHHHHHHhc-CCeEEEEEC
Confidence 4789999999874 24566676766665 344555543
No 196
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=46.30 E-value=51 Score=25.00 Aligned_cols=74 Identities=8% Similarity=0.108 Sum_probs=48.5
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHH---HHHhc-CCc-EEEeCcHHHHHHHHhcCCcCCCC
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVK---KIEEE-GAN-LLIGTPGRLYDIMERMDVLDFRN 76 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~l~~~-~~~-IiV~TP~~l~~~l~~~~~~~l~~ 76 (183)
+||.+.+++.+..+.+.+.+-. ++.+..+.|+.+..+... ..... .+. ++++|-. . . .++|+..
T Consensus 115 vlIFs~~~~~~~~l~~~L~~~~----g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~-----~-g-~Glnl~~ 183 (271)
T 1z5z_A 115 IAIFTQFVDMGKIIRNIIEKEL----NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA-----G-G-FGINLTS 183 (271)
T ss_dssp EEEEESCHHHHHHHHHHHHHHH----CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCT-----T-C-CCCCCTT
T ss_pred EEEEeccHHHHHHHHHHHHHhc----CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhh-----h-c-CCcCccc
Confidence 7899999999988888777632 455667788776544433 22223 355 5666641 1 2 5789999
Q ss_pred ceEEEEcccc
Q 030094 77 LEILVLDEAD 86 (183)
Q Consensus 77 l~~lVvDEad 86 (183)
+..+|+=+.+
T Consensus 184 a~~VI~~d~~ 193 (271)
T 1z5z_A 184 ANRVIHFDRW 193 (271)
T ss_dssp CSEEEECSCC
T ss_pred CCEEEEECCC
Confidence 9888765544
No 197
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=45.95 E-value=56 Score=25.31 Aligned_cols=65 Identities=14% Similarity=0.032 Sum_probs=40.5
Q ss_pred CCCceEEEEcccch-hhccchHHHHHHHHHhCCCCCeEEEEeecCChH--HHHHHHhhCCCCeEEEEcc
Q 030094 74 FRNLEILVLDEADR-LLDMGFQKQISYIISRLPKLRRTGLFSATQTEA--VEELSKAGLRNPVRVEVRA 139 (183)
Q Consensus 74 l~~l~~lVvDEad~-ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~--v~~~~~~~~~~~~~i~~~~ 139 (183)
+..-+++|+||+|. +- .+..+.+...++..|...-+++.+.++++. -..+..........+....
T Consensus 74 f~~~kvvii~~~~~kl~-~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~ 141 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPN-AAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQT 141 (343)
T ss_dssp CCSCEEEEEECCSSCCC-TTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECC
T ss_pred ccCCeEEEEECCCCCCC-hHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeC
Confidence 45678999999998 64 344566667777766666666665554431 2344555555556666544
No 198
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=45.89 E-value=32 Score=23.33 Aligned_cols=13 Identities=31% Similarity=0.460 Sum_probs=11.3
Q ss_pred ceEEEEcccchhh
Q 030094 77 LEILVLDEADRLL 89 (183)
Q Consensus 77 l~~lVvDEad~ll 89 (183)
-.++++||+|.+.
T Consensus 116 ~~vl~iDe~~~l~ 128 (195)
T 1jbk_A 116 NVILFIDELHTMV 128 (195)
T ss_dssp TEEEEEETGGGGT
T ss_pred CeEEEEeCHHHHh
Confidence 4589999999996
No 199
>3css_A 6-phosphogluconolactonase; structural genomics, medical structural genomics of pathogen protozoa consortium, SGPP, leish hydrolase; 1.70A {Leishmania braziliensis} PDB: 3ch7_A
Probab=44.66 E-value=34 Score=26.01 Aligned_cols=91 Identities=19% Similarity=0.171 Sum_probs=47.7
Q ss_pred EEEeCcHH-HHHHHHHHHHHhhhhC---CCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhc--CCcCCCC
Q 030094 3 MIISPTRE-LSSQIYHVAQPFISTL---PDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM--DVLDFRN 76 (183)
Q Consensus 3 lIl~Ptre-La~Qi~~~~~~l~~~~---~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~--~~~~l~~ 76 (183)
++++++.+ ++....+.+.+..... .+--+..+.||. ||..+.+.+... +.+++++
T Consensus 8 ~~~~~~~~~l~~~aA~~i~~~i~~a~~~~~~~~l~LsgGs-------------------tp~~ly~~L~~~~~~~i~w~~ 68 (267)
T 3css_A 8 VKICENLSQMSFAAREVILAAIDARVDKSVPVVLALSGGS-------------------TPKRLYEELHEKDLALLQQHA 68 (267)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHHTCSSTTSCEEEEECCSS-------------------TTHHHHHHHHHHSHHHHHTTC
T ss_pred EEEeCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCC-------------------CHHHHHHHHHHhcccCCChhH
Confidence 56777765 7776666665544321 112234444544 344444444321 3577889
Q ss_pred ceEEEEcccchhhc--cchHHHH-HHHHHhCCCCCeEEEE
Q 030094 77 LEILVLDEADRLLD--MGFQKQI-SYIISRLPKLRRTGLF 113 (183)
Q Consensus 77 l~~lVvDEad~ll~--~~~~~~l-~~i~~~l~~~~Q~v~~ 113 (183)
+.++-+||-=.=.+ .++...+ +.+++.++ ..|+..+
T Consensus 69 v~~f~~DEr~vp~~~~~Sn~~~~~~~ll~~~~-~~~i~~~ 107 (267)
T 3css_A 69 VQFILGDERLLSEDDEQSNFSMATKALLRDVP-SSDVISI 107 (267)
T ss_dssp EEEEESEEESSCTTSTTSHHHHHHHHTGGGSC-GGGBCCC
T ss_pred eEEEeeeeeccCCCCHHHHHHHHHHHHhccCC-HHHEEeC
Confidence 99999998631111 1233333 34566666 4455444
No 200
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=43.87 E-value=28 Score=27.00 Aligned_cols=40 Identities=23% Similarity=0.216 Sum_probs=21.5
Q ss_pred ceEEEEcccchhhcc---chHHHHHHHHHhCCCCCeEEEEeec
Q 030094 77 LEILVLDEADRLLDM---GFQKQISYIISRLPKLRRTGLFSAT 116 (183)
Q Consensus 77 l~~lVvDEad~ll~~---~~~~~l~~i~~~l~~~~Q~v~~SAT 116 (183)
-.++++||+|.+.+. .....+....+.++...-.++++++
T Consensus 129 ~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~ 171 (386)
T 2qby_A 129 QVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITN 171 (386)
T ss_dssp CEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEES
T ss_pred eEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEEC
Confidence 458999999999743 3344444444433333333444433
No 201
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=43.83 E-value=26 Score=23.53 Aligned_cols=39 Identities=18% Similarity=0.071 Sum_probs=23.3
Q ss_pred eEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCC
Q 030094 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (183)
Q Consensus 78 ~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~ 118 (183)
..+++||+|.+-. .....+..++...+.+.++++ +++.+
T Consensus 78 g~l~ldei~~l~~-~~q~~Ll~~l~~~~~~~~~I~-~t~~~ 116 (145)
T 3n70_A 78 GTLVLSHPEHLTR-EQQYHLVQLQSQEHRPFRLIG-IGDTS 116 (145)
T ss_dssp SCEEEECGGGSCH-HHHHHHHHHHHSSSCSSCEEE-EESSC
T ss_pred cEEEEcChHHCCH-HHHHHHHHHHhhcCCCEEEEE-ECCcC
Confidence 4799999999843 344555555555544555444 44444
No 202
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=42.30 E-value=26 Score=27.25 Aligned_cols=28 Identities=32% Similarity=0.186 Sum_probs=19.1
Q ss_pred ceEEEEcccchhhccc-hHHHHHHHHHhC
Q 030094 77 LEILVLDEADRLLDMG-FQKQISYIISRL 104 (183)
Q Consensus 77 l~~lVvDEad~ll~~~-~~~~l~~i~~~l 104 (183)
-.++++||+|.+.... ....+..+++..
T Consensus 131 ~~vlilDEi~~l~~~~~~~~~l~~l~~~~ 159 (387)
T 2v1u_A 131 IYIIVLDEIDFLPKRPGGQDLLYRITRIN 159 (387)
T ss_dssp EEEEEEETTTHHHHSTTHHHHHHHHHHGG
T ss_pred eEEEEEccHhhhcccCCCChHHHhHhhch
Confidence 4589999999997542 345566666544
No 203
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=42.27 E-value=99 Score=22.78 Aligned_cols=57 Identities=5% Similarity=-0.021 Sum_probs=33.6
Q ss_pred cEEEeCcHHHHHHHHhcCCcCCCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEee
Q 030094 53 NLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (183)
Q Consensus 53 ~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SA 115 (183)
.+-+.++..+.+.+.. ...-....++++||+..+ .....+.+..+.+ ...++++++-
T Consensus 68 ~~~~~~~~~i~~~i~~--~~~~~~~dvViIDEaQ~l-~~~~ve~l~~L~~---~gi~Vil~Gl 124 (223)
T 2b8t_A 68 SVEVESAPEILNYIMS--NSFNDETKVIGIDEVQFF-DDRICEVANILAE---NGFVVIISGL 124 (223)
T ss_dssp CEEESSTHHHHHHHHS--TTSCTTCCEEEECSGGGS-CTHHHHHHHHHHH---TTCEEEEECC
T ss_pred ccccCCHHHHHHHHHH--HhhCCCCCEEEEecCccC-cHHHHHHHHHHHh---CCCeEEEEec
Confidence 4556777777777654 222345789999999764 3333444444443 2456666554
No 204
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=40.82 E-value=21 Score=29.07 Aligned_cols=41 Identities=27% Similarity=0.240 Sum_probs=31.8
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCC-CCeEEEEee
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLFSA 115 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~-~~Q~v~~SA 115 (183)
..-.++++||.+.-+|......+..++..+.. ..|+++.|.
T Consensus 354 ~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th 395 (430)
T 1w1w_A 354 QPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISL 395 (430)
T ss_dssp SCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECS
T ss_pred CCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEEC
Confidence 45679999999999998878888887777643 567777654
No 205
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=40.33 E-value=44 Score=30.19 Aligned_cols=52 Identities=17% Similarity=0.135 Sum_probs=35.7
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHh--cCCcEEEeCc
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEE--EGANLLIGTP 59 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~--~~~~IiV~TP 59 (183)
+||.|.|++-+..+.+.+.+. ++.+..+.|+....+. ..... ..-.|+|||-
T Consensus 435 vLVft~s~~~se~Ls~~L~~~-----gi~~~vLhg~~~~rEr-~ii~~ag~~g~VlIATd 488 (844)
T 1tf5_A 435 VLVGTVAVETSELISKLLKNK-----GIPHQVLNAKNHEREA-QIIEEAGQKGAVTIATN 488 (844)
T ss_dssp EEEEESCHHHHHHHHHHHHTT-----TCCCEEECSSCHHHHH-HHHTTTTSTTCEEEEET
T ss_pred EEEEECCHHHHHHHHHHHHHC-----CCCEEEeeCCccHHHH-HHHHHcCCCCeEEEeCC
Confidence 799999999999888877663 6677788887543332 22211 1247999995
No 206
>3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid, hydrolase, structural genomics; 2.15A {Mycobacterium tuberculosis}
Probab=40.08 E-value=32 Score=26.36 Aligned_cols=55 Identities=11% Similarity=0.104 Sum_probs=30.7
Q ss_pred cHHHHHHHHh-cCCcCCCCceEEEEcccchhhc----cchHHHHH-HHHHhCC-CCCeEEEEee
Q 030094 59 PGRLYDIMER-MDVLDFRNLEILVLDEADRLLD----MGFQKQIS-YIISRLP-KLRRTGLFSA 115 (183)
Q Consensus 59 P~~l~~~l~~-~~~~~l~~l~~lVvDEad~ll~----~~~~~~l~-~i~~~l~-~~~Q~v~~SA 115 (183)
|..+++.+.. ...++++++.++-+||-= +. .++...++ .+++.++ +..|+..+-.
T Consensus 67 P~~~y~~L~~~~~~idw~~v~~f~~DEr~--vp~~~~~Sn~~~~~~~Ll~~v~i~~~~i~~~~~ 128 (268)
T 3ico_A 67 GIALLRYLSAQAQQIEWSKVHLFWGDERY--VPEDDDERNLKQARRALLNHVDIPSNQVHPMAA 128 (268)
T ss_dssp HHHHHHHHHHHGGGSCGGGEEEEESEEEC--SCTTCTTCHHHHHHHHTGGGSCCCGGGBCCCCC
T ss_pred hhHHHHHHHHHhhhhhheeeEEeeccccc--CCCCcchhHHHHHHHHHHhccCCcccccccccc
Confidence 3344444432 146889999999999963 22 23444443 4566654 3345555433
No 207
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=39.59 E-value=13 Score=29.27 Aligned_cols=25 Identities=24% Similarity=0.173 Sum_probs=16.0
Q ss_pred ceEEEEcccchhhccchHHHHHHHHH
Q 030094 77 LEILVLDEADRLLDMGFQKQISYIIS 102 (183)
Q Consensus 77 l~~lVvDEad~ll~~~~~~~l~~i~~ 102 (183)
-.++++||+|.+ +......+..+++
T Consensus 126 ~~vlilDE~~~l-~~~~~~~L~~~~~ 150 (389)
T 1fnn_A 126 YMFLVLDDAFNL-APDILSTFIRLGQ 150 (389)
T ss_dssp CEEEEEETGGGS-CHHHHHHHHHHTT
T ss_pred eEEEEEECcccc-chHHHHHHHHHHH
Confidence 458999999998 4334444444443
No 208
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=39.30 E-value=36 Score=28.46 Aligned_cols=42 Identities=19% Similarity=0.263 Sum_probs=26.9
Q ss_pred eEEEEcccchhhcc----------chHHHHHHHHHhCCCCCeEEEEeecCCh
Q 030094 78 EILVLDEADRLLDM----------GFQKQISYIISRLPKLRRTGLFSATQTE 119 (183)
Q Consensus 78 ~~lVvDEad~ll~~----------~~~~~l~~i~~~l~~~~Q~v~~SAT~~~ 119 (183)
.++++||+|.+... .....+...++.......+++++||=.+
T Consensus 299 ~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp EEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred cEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 58999999998752 1234455555655555666776776544
No 209
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=37.90 E-value=45 Score=24.40 Aligned_cols=13 Identities=31% Similarity=0.289 Sum_probs=7.8
Q ss_pred ceEEEEcccchhh
Q 030094 77 LEILVLDEADRLL 89 (183)
Q Consensus 77 l~~lVvDEad~ll 89 (183)
-.++++||+|.+.
T Consensus 99 ~~vl~iDeid~l~ 111 (262)
T 2qz4_A 99 PCIVYIDEIDAVG 111 (262)
T ss_dssp SEEEEEECC----
T ss_pred CeEEEEeCcchhh
Confidence 3689999999985
No 210
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=37.79 E-value=40 Score=26.00 Aligned_cols=14 Identities=29% Similarity=0.501 Sum_probs=11.8
Q ss_pred ceEEEEcccchhhc
Q 030094 77 LEILVLDEADRLLD 90 (183)
Q Consensus 77 l~~lVvDEad~ll~ 90 (183)
-.++++||+|.+..
T Consensus 111 ~~vl~iDEid~l~~ 124 (322)
T 3eie_A 111 PSIIFIDQVDALTG 124 (322)
T ss_dssp SEEEEEECGGGGSC
T ss_pred CeEEEechhhhhhc
Confidence 36899999999964
No 211
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=37.58 E-value=24 Score=26.34 Aligned_cols=63 Identities=11% Similarity=0.058 Sum_probs=36.0
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchH-HHHHHHHh-cCCcEEEeCcHHHHHHHHh
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVK-ADVKKIEE-EGANLLIGTPGRLYDIMER 68 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~-~~~~~l~~-~~~~IiV~TP~~l~~~l~~ 68 (183)
.++++|..+|.....+.+.++.. ...+..+.++.... ...+.+.. .++||||+--+. ..++++
T Consensus 15 ii~i~~~~~L~~~~~~i~~e~~~---~~~I~vi~~~le~av~~a~~~~~~~~~dVIISRGgt-a~~Lr~ 79 (225)
T 2pju_A 15 VIWTVSVTRLFELFRDISLEFDH---LANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSN-GAYLKS 79 (225)
T ss_dssp EEEEECCHHHHHHHHHHHTTTTT---TCEEEEECCCHHHHHHHHHHHTTTSCCSEEEEEHHH-HHHHHT
T ss_pred EEEEEchHHHHHHHHHHHHhhCC---CceEEEecCcHHHHHHHHHHHHhcCCCeEEEeCChH-HHHHHh
Confidence 47899999999977766665422 24444444443321 11222223 469999987655 344443
No 212
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=37.46 E-value=57 Score=26.67 Aligned_cols=74 Identities=7% Similarity=0.079 Sum_probs=49.1
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHH---HHhc-CCc-EEEeCcHHHHHHHHhcCCcCCCC
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKK---IEEE-GAN-LLIGTPGRLYDIMERMDVLDFRN 76 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~---l~~~-~~~-IiV~TP~~l~~~l~~~~~~~l~~ 76 (183)
+||.+.+++.+..+.+.+.+.. +..+..+.|+.+.++.... ..+. .+. ++++|- .. . .++|+..
T Consensus 344 ~lvF~~~~~~~~~l~~~l~~~~----~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~-----~~-~-~Glnl~~ 412 (500)
T 1z63_A 344 IAIFTQFVDMGKIIRNIIEKEL----NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK-----AG-G-FGINLTS 412 (500)
T ss_dssp EEEECSCHHHHHHHHHHHHHHH----TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECC-----CC---CCCCCTT
T ss_pred EEEEEehHHHHHHHHHHHHHhh----CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecc-----cc-c-CCCchhh
Confidence 6899999999998888877642 4556677888765444332 2222 244 677764 12 2 5789999
Q ss_pred ceEEEEcccc
Q 030094 77 LEILVLDEAD 86 (183)
Q Consensus 77 l~~lVvDEad 86 (183)
+..+|+-+.+
T Consensus 413 ~~~vi~~d~~ 422 (500)
T 1z63_A 413 ANRVIHFDRW 422 (500)
T ss_dssp CSEEEESSCC
T ss_pred CCEEEEeCCC
Confidence 9988875544
No 213
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=36.90 E-value=13 Score=31.28 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=30.3
Q ss_pred eEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEee
Q 030094 78 EILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (183)
Q Consensus 78 ~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SA 115 (183)
+++++||-+.-++......+..++..+.+..|+++.|-
T Consensus 419 ~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH 456 (517)
T 4ad8_A 419 PSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTH 456 (517)
T ss_dssp SEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECC
T ss_pred CEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 89999999999998878888888777765566666554
No 214
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=36.78 E-value=46 Score=25.06 Aligned_cols=14 Identities=43% Similarity=0.691 Sum_probs=12.0
Q ss_pred ceEEEEcccchhhc
Q 030094 77 LEILVLDEADRLLD 90 (183)
Q Consensus 77 l~~lVvDEad~ll~ 90 (183)
-.++++||+|.+..
T Consensus 114 ~~vl~iDEid~l~~ 127 (297)
T 3b9p_A 114 PSIIFIDEVDSLLS 127 (297)
T ss_dssp SEEEEEETGGGTSB
T ss_pred CcEEEeccHHHhcc
Confidence 46899999999975
No 215
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=36.45 E-value=42 Score=25.63 Aligned_cols=40 Identities=20% Similarity=0.235 Sum_probs=22.9
Q ss_pred eEEEEcccchhhccc-------------hHHHHHHHHHhCCCCCeEEEEeecC
Q 030094 78 EILVLDEADRLLDMG-------------FQKQISYIISRLPKLRRTGLFSATQ 117 (183)
Q Consensus 78 ~~lVvDEad~ll~~~-------------~~~~l~~i~~~l~~~~Q~v~~SAT~ 117 (183)
.++++||+|.+.... ....+...++.+.....++++.+|=
T Consensus 110 ~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn 162 (301)
T 3cf0_A 110 CVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATN 162 (301)
T ss_dssp EEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEES
T ss_pred eEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecC
Confidence 689999999986320 1233334444444444556666663
No 216
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=35.88 E-value=26 Score=26.49 Aligned_cols=39 Identities=28% Similarity=0.227 Sum_probs=21.7
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEe
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~S 114 (183)
..-+++++||+|.+... ....+..+++..+....+++.+
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 139 (319)
T 2chq_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSC 139 (319)
T ss_dssp CCCEEEEEETGGGSCHH-HHHTTGGGTSSSSSSEEEEEEE
T ss_pred CCceEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 55689999999998432 2233333333333444444443
No 217
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=35.70 E-value=24 Score=27.57 Aligned_cols=36 Identities=19% Similarity=0.133 Sum_probs=21.2
Q ss_pred EEEEcccchhhccchHHH-HHHHHHhCCCCCeEEEEee
Q 030094 79 ILVLDEADRLLDMGFQKQ-ISYIISRLPKLRRTGLFSA 115 (183)
Q Consensus 79 ~lVvDEad~ll~~~~~~~-l~~i~~~l~~~~Q~v~~SA 115 (183)
++++||+|.+........ +..+++.. ....+++.|.
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~ 172 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISN 172 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECS
T ss_pred EEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEEC
Confidence 999999999875422334 55555544 3334444443
No 218
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=34.64 E-value=52 Score=25.09 Aligned_cols=36 Identities=25% Similarity=0.357 Sum_probs=23.6
Q ss_pred eEEEEcccchhhc---cchHHHHHHHHHhCCCCCeEEEEe
Q 030094 78 EILVLDEADRLLD---MGFQKQISYIISRLPKLRRTGLFS 114 (183)
Q Consensus 78 ~~lVvDEad~ll~---~~~~~~l~~i~~~l~~~~Q~v~~S 114 (183)
-++|+||+|.+.. ..+...+..+.+..+ ...+++.+
T Consensus 139 ~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~g 177 (357)
T 2fna_A 139 VIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RIKFIMSG 177 (357)
T ss_dssp EEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TEEEEEEE
T ss_pred eEEEEECHHHhhccCchhHHHHHHHHHHcCC-CeEEEEEc
Confidence 3789999999864 346667777766643 34444443
No 219
>3eb9_A 6-phosphogluconolactonase; catalytic mechanism, pentose phosphate pathway, hydrolase, zinc binding site; HET: FLC; 2.00A {Trypanosoma brucei} PDB: 2j0e_A* 3e7f_A*
Probab=34.50 E-value=26 Score=26.78 Aligned_cols=44 Identities=16% Similarity=0.153 Sum_probs=26.9
Q ss_pred CCcCC-CCceEEEEcccchhhc----cchHHHHH-HHHHhCCCCCeEEEEeec
Q 030094 70 DVLDF-RNLEILVLDEADRLLD----MGFQKQIS-YIISRLPKLRRTGLFSAT 116 (183)
Q Consensus 70 ~~~~l-~~l~~lVvDEad~ll~----~~~~~~l~-~i~~~l~~~~Q~v~~SAT 116 (183)
..+++ +++.++-+||-= +. .++...++ .+++.++ ..|+..+-.+
T Consensus 61 ~~idw~~~v~~f~~DEr~--vp~~~~~Sn~~~~~~~ll~~i~-~~~i~~~~~~ 110 (266)
T 3eb9_A 61 NLLREKRALRFFMGDERM--VPADSTDSNYNMAREVLLHDIP-DDLVFPFDTS 110 (266)
T ss_dssp HHHTTSCCEEEEESEEES--SCTTSTTCHHHHHHHHTGGGSC-GGGEECCCCT
T ss_pred cCCChHHcEEEEeeeeec--cCCCChHHHHHHHHHHhhcCCC-HHHEEeCCCc
Confidence 36889 999999999953 32 23444443 4555443 3466665554
No 220
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=34.42 E-value=34 Score=27.00 Aligned_cols=14 Identities=29% Similarity=0.546 Sum_probs=11.5
Q ss_pred ceEEEEcccchhhc
Q 030094 77 LEILVLDEADRLLD 90 (183)
Q Consensus 77 l~~lVvDEad~ll~ 90 (183)
-.++|+||+|.+..
T Consensus 139 ~~llvlDe~~~l~~ 152 (412)
T 1w5s_A 139 YLLVILDEFQSMLS 152 (412)
T ss_dssp EEEEEEESTHHHHS
T ss_pred eEEEEEeCHHHHhh
Confidence 34889999999875
No 221
>3tx2_A Probable 6-phosphogluconolactonase; ssgcid, hydrolase; 1.50A {Mycobacterium abscessus}
Probab=33.92 E-value=32 Score=26.02 Aligned_cols=53 Identities=15% Similarity=0.124 Sum_probs=29.7
Q ss_pred cHHHHHHHHhc-CCcCCCCceEEEEcccchhhc----cchHHHHH-HHHHhCC-CCCeEEEE
Q 030094 59 PGRLYDIMERM-DVLDFRNLEILVLDEADRLLD----MGFQKQIS-YIISRLP-KLRRTGLF 113 (183)
Q Consensus 59 P~~l~~~l~~~-~~~~l~~l~~lVvDEad~ll~----~~~~~~l~-~i~~~l~-~~~Q~v~~ 113 (183)
|..+++.+... ..++++++.++-+||-- +. .++...++ .+++.++ +..|+..+
T Consensus 51 P~~~y~~L~~~~~~idw~~v~~f~~DEr~--vp~~~~~Sn~~~~~~~ll~~v~i~~~~i~~~ 110 (251)
T 3tx2_A 51 GIALLKHLRDVASGLDWTNVHVFWGDDRY--VPKTDPERNAWQAWEALLEHVNFPLRNMHAM 110 (251)
T ss_dssp HHHHHHHHHHHHTTSCGGGEEEEESEEES--SCTTCTTCHHHHHHHHTGGGSCCCGGGBCCC
T ss_pred HHHHHHHHHhhccCCCCceeEEEeeeecc--CCCCChHHHHHHHHHHhhccCCCCHHHEEEC
Confidence 33444444321 46899999999999963 22 23444443 4566664 23454444
No 222
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=33.87 E-value=51 Score=21.94 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=21.6
Q ss_pred eEEEEcccchhhccchHHHHHHHHHhC-CCCCeEEEEeec
Q 030094 78 EILVLDEADRLLDMGFQKQISYIISRL-PKLRRTGLFSAT 116 (183)
Q Consensus 78 ~~lVvDEad~ll~~~~~~~l~~i~~~l-~~~~Q~v~~SAT 116 (183)
..+++||+|.+-. .....+..+++.. +.+..+++.|..
T Consensus 77 ~~l~lDei~~l~~-~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 77 GVLYVGDIAQYSR-NIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp SEEEEEECTTCCH-HHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred CeEEEeChHHCCH-HHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 5899999999843 2333444444433 334555555443
No 223
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=33.44 E-value=46 Score=22.82 Aligned_cols=40 Identities=28% Similarity=0.415 Sum_probs=30.2
Q ss_pred CceEEEEcccchhhccchHHHHHHHHHhCCC-CCeEEEEee
Q 030094 76 NLEILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLFSA 115 (183)
Q Consensus 76 ~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~-~~Q~v~~SA 115 (183)
+-+++++||--.-+|......+..++..+.. ..++++.|-
T Consensus 81 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH 121 (148)
T 1f2t_B 81 EISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSH 121 (148)
T ss_dssp SCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEES
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEC
Confidence 4579999999998888788888888888754 345555443
No 224
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=32.85 E-value=39 Score=29.60 Aligned_cols=59 Identities=20% Similarity=0.318 Sum_probs=36.2
Q ss_pred CcEEEeCcHH-----HHHHHHhcCCc--------CCCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCC
Q 030094 52 ANLLIGTPGR-----LYDIMERMDVL--------DFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (183)
Q Consensus 52 ~~IiV~TP~~-----l~~~l~~~~~~--------~l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~ 118 (183)
..++|+.|.. |.+.....-.+ .....+++|||||=.+ -.+.+..++...+ .++||.|..
T Consensus 218 ~~~~vtAP~~~a~~~l~~~~~~~i~~~~Pd~~~~~~~~~dlliVDEAAaI----p~pll~~ll~~~~----~v~~~tTv~ 289 (671)
T 2zpa_A 218 GRAIVTAPAKASTDVLAQFAGEKFRFIAPDALLASDEQADWLVVDEAAAI----PAPLLHQLVSRFP----RTLLTTTVQ 289 (671)
T ss_dssp SCEEEECSSCCSCHHHHHHHGGGCCBCCHHHHHHSCCCCSEEEEETGGGS----CHHHHHHHHTTSS----EEEEEEEBS
T ss_pred hCcEEECCCHHHHHHHHHHhhCCeEEeCchhhhhCcccCCEEEEEchhcC----CHHHHHHHHhhCC----eEEEEecCC
Confidence 3578887753 44443321111 2345789999999765 2566667776443 377888875
No 225
>3oc6_A 6-phosphogluconolactonase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, carboxylic ester hydrolase; 2.10A {Mycobacterium smegmatis}
Probab=32.82 E-value=33 Score=25.85 Aligned_cols=53 Identities=13% Similarity=0.058 Sum_probs=30.0
Q ss_pred cHHHHHHHHhc-CCcCCCCceEEEEcccchhhc----cchHHHHH-HHHHhCC-CCCeEEEE
Q 030094 59 PGRLYDIMERM-DVLDFRNLEILVLDEADRLLD----MGFQKQIS-YIISRLP-KLRRTGLF 113 (183)
Q Consensus 59 P~~l~~~l~~~-~~~~l~~l~~lVvDEad~ll~----~~~~~~l~-~i~~~l~-~~~Q~v~~ 113 (183)
|..+++.+... ..++++++.++-+||-- +. .++...++ .+++.++ +..|+..+
T Consensus 51 P~~~y~~L~~~~~~idw~~v~~f~~DEr~--vp~~~~~Sn~~~~~~~ll~~v~i~~~~i~~~ 110 (248)
T 3oc6_A 51 GIGLLKRVRERSGEIDWSKVHIYWGDERF--VPQDDDERNDKQAREALLDHIGIPPVNVHAM 110 (248)
T ss_dssp HHHHHHHHHHTGGGSCGGGEEEEESEEEC--SCTTCTTCHHHHHHHHTGGGSCCCGGGBCCC
T ss_pred HHHHHHHHHhhccCCCcceEEEEEeeecc--CCCCChHHHHHHHHHHhhccCCCChhhEEec
Confidence 44444444331 36889999999999963 21 23444443 4566664 23455444
No 226
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=31.51 E-value=1.6e+02 Score=22.56 Aligned_cols=73 Identities=14% Similarity=0.274 Sum_probs=35.3
Q ss_pred HHHHHHhhhhCCC--ceEEEEEcCcchHH------HHHHHH-hcCCcEEEeCcHHHHHHHHhc---CC----c-CCCCce
Q 030094 16 YHVAQPFISTLPD--VKSVLLVGGVEVKA------DVKKIE-EEGANLLIGTPGRLYDIMERM---DV----L-DFRNLE 78 (183)
Q Consensus 16 ~~~~~~l~~~~~~--~~~~~~~g~~~~~~------~~~~l~-~~~~~IiV~TP~~l~~~l~~~---~~----~-~l~~l~ 78 (183)
...+..+....+. -...+++|...... -...+. ..+..++..+...+..-+... +. + .+.+..
T Consensus 137 ~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 216 (308)
T 2qgz_A 137 FSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKNVP 216 (308)
T ss_dssp HHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHHTSS
T ss_pred HHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhcCCC
Confidence 3344455544322 35677787544221 112233 445666654444444444320 00 1 134567
Q ss_pred EEEEcccchh
Q 030094 79 ILVLDEADRL 88 (183)
Q Consensus 79 ~lVvDEad~l 88 (183)
++++||++..
T Consensus 217 lLiiDdig~~ 226 (308)
T 2qgz_A 217 VLILDDIGAE 226 (308)
T ss_dssp EEEEETCCC-
T ss_pred EEEEcCCCCC
Confidence 9999999654
No 227
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=30.30 E-value=54 Score=24.46 Aligned_cols=43 Identities=21% Similarity=0.152 Sum_probs=31.7
Q ss_pred CceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCC
Q 030094 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (183)
Q Consensus 76 ~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~ 118 (183)
+-+++++||--.-+|......+..+++.+.+...+++++..-.
T Consensus 161 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 203 (250)
T 2d2e_A 161 EPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQ 203 (250)
T ss_dssp CCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSS
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 3478999999999998888888888887754444566655433
No 228
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=30.27 E-value=67 Score=25.26 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=12.1
Q ss_pred CceEEEEcccchhhc
Q 030094 76 NLEILVLDEADRLLD 90 (183)
Q Consensus 76 ~l~~lVvDEad~ll~ 90 (183)
.-.++++||+|.+..
T Consensus 143 ~~~vl~iDEid~l~~ 157 (355)
T 2qp9_X 143 KPSIIFIDQVDALTG 157 (355)
T ss_dssp SSEEEEEECGGGGTC
T ss_pred CCeEEEEechHhhcc
Confidence 346899999999863
No 229
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=30.26 E-value=26 Score=25.49 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=30.8
Q ss_pred CCceEEEEcccchhhc-----cchHHHHHHHHHhCCCCCeEEEEeecCChHH
Q 030094 75 RNLEILVLDEADRLLD-----MGFQKQISYIISRLPKLRRTGLFSATQTEAV 121 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~-----~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v 121 (183)
.+.+.+++||.-.+++ ......+..+++.+...--+++++......+
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~ 185 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQ 185 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC---
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCC
Confidence 4568999999998886 4455557777777644345677776665554
No 230
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=30.20 E-value=20 Score=27.11 Aligned_cols=52 Identities=21% Similarity=0.345 Sum_probs=36.1
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCC-CeEEEEeecCChHHHHHHH
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKL-RRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~-~Q~v~~SAT~~~~v~~~~~ 126 (183)
.+-+++++||--.-+|......+..++..+.++ ..+++++..-.+.+..++.
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d 197 (253)
T 2nq2_C 145 SECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIAN 197 (253)
T ss_dssp TTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCS
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence 455799999999999888888888888777443 4466666544444444443
No 231
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=29.67 E-value=19 Score=26.84 Aligned_cols=53 Identities=13% Similarity=0.155 Sum_probs=35.9
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
..+-+++++||--.-+|......+..+++.+.+...+++++..-.+.+..++.
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d 207 (240)
T 1ji0_A 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAH 207 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCS
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC
Confidence 45668999999999998877888888877764333456665544334444443
No 232
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=29.13 E-value=66 Score=24.30 Aligned_cols=42 Identities=24% Similarity=0.273 Sum_probs=32.1
Q ss_pred CceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecC
Q 030094 76 NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (183)
Q Consensus 76 ~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~ 117 (183)
+-+++++||--.-+|......+..+++.+.+...+++++..-
T Consensus 182 ~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd 223 (267)
T 2zu0_C 182 EPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHY 223 (267)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeC
Confidence 447899999999999888888988888885544566665443
No 233
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=28.55 E-value=1.6e+02 Score=21.01 Aligned_cols=40 Identities=15% Similarity=0.278 Sum_probs=28.1
Q ss_pred CceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHh
Q 030094 28 DVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER 68 (183)
Q Consensus 28 ~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~ 68 (183)
+++...+.......+....+...|++++|| +....++-++
T Consensus 119 ~i~~~~~~~~~e~~~~i~~l~~~G~~vvVG-~~~~~~~A~~ 158 (196)
T 2q5c_A 119 KIKEFLFSSEDEITTLISKVKTENIKIVVS-GKTVTDEAIK 158 (196)
T ss_dssp EEEEEEECSGGGHHHHHHHHHHTTCCEEEE-CHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCeEEEC-CHHHHHHHHH
Confidence 355555556666777888888889999999 4455666655
No 234
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=28.38 E-value=23 Score=26.90 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=36.3
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELS 125 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~ 125 (183)
..+-+++++||--.-+|......+..+++.+.+...+++++..-.+.+..++
T Consensus 175 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~ 226 (263)
T 2olj_A 175 AMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVG 226 (263)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHC
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhC
Confidence 4566899999999999887788888888777444456666554444444443
No 235
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=27.98 E-value=2.2e+02 Score=24.38 Aligned_cols=73 Identities=15% Similarity=0.136 Sum_probs=48.2
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHH--hcC-C---cEEEeCcHHHHHHHHhcCCcCCC
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIE--EEG-A---NLLIGTPGRLYDIMERMDVLDFR 75 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~--~~~-~---~IiV~TP~~l~~~l~~~~~~~l~ 75 (183)
+||.+.+++.+..+.+.+... ++.+..+.|+.+.++....+. +.+ . -++++|- .. . .++|+.
T Consensus 419 ~lIFs~~~~~~~~l~~~l~~~-----g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~-----a~-g-~Glnl~ 486 (644)
T 1z3i_X 419 VVLVSNYTQTLDLFEKLCRNR-----RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK-----AG-G-CGLNLI 486 (644)
T ss_dssp EEEEESCHHHHHHHHHHHHHH-----TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG-----GS-C-TTCCCT
T ss_pred EEEEEccHHHHHHHHHHHHHC-----CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecc-----cc-c-CCcccc
Confidence 688999999888877766653 567778888876555444321 222 2 2566663 11 2 578999
Q ss_pred CceEEEEcccc
Q 030094 76 NLEILVLDEAD 86 (183)
Q Consensus 76 ~l~~lVvDEad 86 (183)
.+..+|+=+.+
T Consensus 487 ~a~~Vi~~d~~ 497 (644)
T 1z3i_X 487 GANRLVMFDPD 497 (644)
T ss_dssp TEEEEEECSCC
T ss_pred cCCEEEEECCC
Confidence 99988865554
No 236
>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis}
Probab=27.38 E-value=1.6e+02 Score=21.74 Aligned_cols=55 Identities=9% Similarity=0.131 Sum_probs=35.0
Q ss_pred cHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHH
Q 030094 8 TRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIME 67 (183)
Q Consensus 8 treLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~ 67 (183)
--+++.++++.+++. +.++..+........+.......|+|++=..|.-+.++++
T Consensus 141 G~~~v~~i~~~~~~~-----~~~t~ilaAS~R~~~~v~~~a~~G~d~~Tip~~vl~~l~~ 195 (212)
T 3r8r_A 141 GLDLISEVKQIFDIH-----GLDTQIIAASIRHPQHVTEAALRGAHIGTMPLKVIHALTK 195 (212)
T ss_dssp HHHHHHHHHHHHHHH-----TCCCEEEEBSCCSHHHHHHHHHTTCSEEEECHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHc-----CCCCEEEEecCCCHHHHHHHHHcCCCEEEcCHHHHHHHHc
Confidence 346777777777766 3445555555555556655445799988777766666653
No 237
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=26.85 E-value=73 Score=24.65 Aligned_cols=12 Identities=33% Similarity=0.454 Sum_probs=10.5
Q ss_pred eEEEEcccchhh
Q 030094 78 EILVLDEADRLL 89 (183)
Q Consensus 78 ~~lVvDEad~ll 89 (183)
.++++||+|.+-
T Consensus 191 ~vl~IDEi~~l~ 202 (368)
T 3uk6_A 191 GVLFIDEVHMLD 202 (368)
T ss_dssp CEEEEESGGGSB
T ss_pred ceEEEhhccccC
Confidence 499999999984
No 238
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=26.35 E-value=24 Score=26.59 Aligned_cols=48 Identities=23% Similarity=0.262 Sum_probs=33.8
Q ss_pred EEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 79 ILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 79 ~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
++++||--.-+|......+..+++.+.+...+++++..-...+..++.
T Consensus 154 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d 201 (249)
T 2qi9_C 154 LLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAH 201 (249)
T ss_dssp EEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCS
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 999999999998888888888887774334566666544444444443
No 239
>3e15_A Glucose-6-phosphate 1-dehydrogenase; 6-phosphogluconolactonase, malaria, carbohydrate metabolism, glucose metabolism, NADP, oxidoreductase,; HET: MSE; 2.00A {Plasmodium vivax}
Probab=26.34 E-value=91 Score=24.48 Aligned_cols=58 Identities=16% Similarity=0.159 Sum_probs=35.3
Q ss_pred cHHHHHHHHh--cCCcCCCCceEEEEcccchhhc--cchHHHHHHHHHhCCCC--CeEEEEeec
Q 030094 59 PGRLYDIMER--MDVLDFRNLEILVLDEADRLLD--MGFQKQISYIISRLPKL--RRTGLFSAT 116 (183)
Q Consensus 59 P~~l~~~l~~--~~~~~l~~l~~lVvDEad~ll~--~~~~~~l~~i~~~l~~~--~Q~v~~SAT 116 (183)
|..+.+.+.. ...++++++.++-+||-=--.+ .++...++.+++.++-. .|+.....+
T Consensus 72 P~~ly~~L~~~~~~~idw~~V~~f~~DEr~vp~d~~~Sn~~~~~~l~~~v~i~~~~~i~~~~g~ 135 (312)
T 3e15_A 72 PIDVYKNIALVKDIKIDTSKLIFFIIDERYKRDDHKFSNYNNIKFLFESLKINEKEQLYRPDTS 135 (312)
T ss_dssp HHHHHHHHTTCCSSCCCGGGCEEEESEEECCTTCCTTCHHHHHHHHHHHTTCCHHHHEECCCTT
T ss_pred HHHHHHHHHHhhccCCCccceEEEEeeeecCCCCChHHHHHHHHHHHhcCCCCccccEEcCCCC
Confidence 4444444432 1468999999999999533211 23444567788888754 366655544
No 240
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=26.22 E-value=83 Score=26.17 Aligned_cols=41 Identities=15% Similarity=0.154 Sum_probs=25.7
Q ss_pred CceEEEEcccchhhcc--chHHHHHHHHHhCCCCCeEEEEeecCC
Q 030094 76 NLEILVLDEADRLLDM--GFQKQISYIISRLPKLRRTGLFSATQT 118 (183)
Q Consensus 76 ~l~~lVvDEad~ll~~--~~~~~l~~i~~~l~~~~Q~v~~SAT~~ 118 (183)
.-.++++||+|.+... +....+..+++.. ...+++.+++..
T Consensus 148 ~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~~ 190 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNERN 190 (516)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCTT
T ss_pred CCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCCC
Confidence 4468999999998653 2335555555543 345666666543
No 241
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=25.99 E-value=3e+02 Score=24.24 Aligned_cols=113 Identities=14% Similarity=0.065 Sum_probs=68.5
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhc---CCc---EEEeCcHHHHHHHHhcCCcCCC
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEE---GAN---LLIGTPGRLYDIMERMDVLDFR 75 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~---IiV~TP~~l~~~l~~~~~~~l~ 75 (183)
+||.+..+..+..+.+.+... ++.+..+.|+.+..++...+..- +.. ++++|- .. . .++|+.
T Consensus 575 vLIFsq~~~~ld~L~~~L~~~-----g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~-----ag-g-~GlNL~ 642 (800)
T 3mwy_W 575 VLIFSQMVRMLDILGDYLSIK-----GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTR-----AG-G-LGINLM 642 (800)
T ss_dssp EEEEESCHHHHHHHHHHHHHH-----TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHH-----HH-T-TTCCCT
T ss_pred EEEEechHHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecc-----cc-c-CCCCcc
Confidence 688999998888777766553 56677888887776666555332 223 566652 33 3 689999
Q ss_pred CceEEEEcccchhhccchHHHHHHHHHhC--CCCCe----EEEEeecCChHHHHHHHhhCC
Q 030094 76 NLEILVLDEADRLLDMGFQKQISYIISRL--PKLRR----TGLFSATQTEAVEELSKAGLR 130 (183)
Q Consensus 76 ~l~~lVvDEad~ll~~~~~~~l~~i~~~l--~~~~Q----~v~~SAT~~~~v~~~~~~~~~ 130 (183)
.+..+|+=+.+. +....++.+-+.. +..+. .++...|+...+.+.+..-+.
T Consensus 643 ~a~~VI~~D~~w----np~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~ 699 (800)
T 3mwy_W 643 TADTVVIFDSDW----NPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMI 699 (800)
T ss_dssp TCCEEEESSCCS----CSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTT
T ss_pred ccceEEEecCCC----ChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHH
Confidence 999888755442 3444555444333 22222 244455666666666655443
No 242
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=25.92 E-value=1.1e+02 Score=27.57 Aligned_cols=52 Identities=13% Similarity=0.064 Sum_probs=35.5
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHh--cCCcEEEeCc
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEE--EGANLLIGTP 59 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~--~~~~IiV~TP 59 (183)
+||.|.|++-+..+.+.+++. ++....+.|+....+. ..... ..-.|+|||.
T Consensus 444 vLVft~sie~se~Ls~~L~~~-----gi~~~vLnak~~~rEa-~iia~agr~G~VtIATn 497 (853)
T 2fsf_A 444 VLVGTISIEKSELVSNELTKA-----GIKHNVLNAKFHANEA-AIVAQAGYPAAVTIATN 497 (853)
T ss_dssp EEEEESSHHHHHHHHHHHHHT-----TCCCEECCTTCHHHHH-HHHHTTTSTTCEEEEES
T ss_pred EEEEECcHHHHHHHHHHHHHC-----CCCEEEecCChhHHHH-HHHHhcCCCCeEEEecc
Confidence 799999999999888877764 5677777777543222 22211 1237999996
No 243
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=25.43 E-value=1.5e+02 Score=27.13 Aligned_cols=52 Identities=12% Similarity=0.025 Sum_probs=35.8
Q ss_pred EEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHh--cCCcEEEeCc
Q 030094 2 GMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEE--EGANLLIGTP 59 (183)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~--~~~~IiV~TP 59 (183)
+||.|.|.+-+..+.+.+++. ++....+.|+....+. ..... ..-.|+|+|.
T Consensus 463 vLVft~Sie~sE~Ls~~L~~~-----Gi~~~vLnak~~~rEa-~iia~agr~G~VtIATn 516 (922)
T 1nkt_A 463 VLIGTTSVERSEYLSRQFTKR-----RIPHNVLNAKYHEQEA-TIIAVAGRRGGVTVATN 516 (922)
T ss_dssp EEEEESCHHHHHHHHHHHHHT-----TCCCEEECSSCHHHHH-HHHHTTTSTTCEEEEET
T ss_pred EEEEECCHHHHHHHHHHHHHC-----CCCEEEecCChhHHHH-HHHHhcCCCCeEEEecc
Confidence 799999999999888877764 6777888887543222 22211 1237999995
No 244
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=24.64 E-value=1e+02 Score=23.28 Aligned_cols=42 Identities=31% Similarity=0.468 Sum_probs=32.5
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCC-CeEEEEee
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKL-RRTGLFSA 115 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~-~Q~v~~SA 115 (183)
+.+-+++++||--.-+|......+..++..+.+. ..+++++.
T Consensus 172 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivt 214 (271)
T 2ixe_A 172 IRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLIT 214 (271)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEEC
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEe
Confidence 4666899999999999988888899988888542 34566544
No 245
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=24.13 E-value=83 Score=24.67 Aligned_cols=14 Identities=36% Similarity=0.643 Sum_probs=11.8
Q ss_pred ceEEEEcccchhhc
Q 030094 77 LEILVLDEADRLLD 90 (183)
Q Consensus 77 l~~lVvDEad~ll~ 90 (183)
-.++++||+|.+..
T Consensus 177 ~~vl~iDEid~l~~ 190 (357)
T 3d8b_A 177 PAVIFIDEIDSLLS 190 (357)
T ss_dssp SEEEEEETHHHHTB
T ss_pred CeEEEEeCchhhhc
Confidence 46899999999964
No 246
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=24.07 E-value=89 Score=22.98 Aligned_cols=26 Identities=23% Similarity=0.115 Sum_probs=17.3
Q ss_pred ceEEEEcccchhhccchHHHHHHHHHh
Q 030094 77 LEILVLDEADRLLDMGFQKQISYIISR 103 (183)
Q Consensus 77 l~~lVvDEad~ll~~~~~~~l~~i~~~ 103 (183)
-..+++||+|.+-. .....+..+++.
T Consensus 101 ~~~l~lDEi~~l~~-~~q~~Ll~~l~~ 126 (265)
T 2bjv_A 101 GGTLFLDELATAPM-MVQEKLLRVIEY 126 (265)
T ss_dssp TSEEEEESGGGSCH-HHHHHHHHHHHH
T ss_pred CcEEEEechHhcCH-HHHHHHHHHHHh
Confidence 36999999999843 334455555553
No 247
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=23.81 E-value=18 Score=27.41 Aligned_cols=46 Identities=22% Similarity=0.201 Sum_probs=33.3
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCCh
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~ 119 (183)
..+-+++++||--.-+|......+..+++.+.+...+++++..-.+
T Consensus 162 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~ 207 (256)
T 1vpl_A 162 MVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML 207 (256)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred HcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence 4566899999999999887788888888777433456666554333
No 248
>4gic_A HDH, histidinol dehydrogenase; protein structure initiative, STR genomics, PSI-biology, NEW YORK structural genomics researc consortium; 2.05A {Methylococcus capsulatus}
Probab=23.79 E-value=1.7e+02 Score=24.00 Aligned_cols=67 Identities=13% Similarity=0.229 Sum_probs=42.3
Q ss_pred CEEEEeCcHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEE
Q 030094 1 MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEIL 80 (183)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~l 80 (183)
+++.++++++|+.++...+.+....+|.- +.-...+.+.+.=|++.+-+...++.+ .+-+.+|.+.
T Consensus 273 ~~iLvT~s~~la~~V~~~i~~~l~~l~r~-----------~i~~~sl~~~g~ii~v~~~~ea~~~~N---~~APEHLel~ 338 (423)
T 4gic_A 273 QAILISPDAAHLEAVQASIERLLPGMERA-----------EVIRTSLERRGGMILVDDLEQAAAVAN---RIAPEHLELS 338 (423)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHGGGCTTH-----------HHHHHHHHHHCEEEECSSHHHHHHHHH---HHCCSEEEEE
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHhhCccH-----------HHHHHHHhcCceEEEEeehHHHHHHHH---hhChHHhhhh
Confidence 47889999999999999999988776421 111122333344455666665555553 3566666654
Q ss_pred E
Q 030094 81 V 81 (183)
Q Consensus 81 V 81 (183)
+
T Consensus 339 ~ 339 (423)
T 4gic_A 339 V 339 (423)
T ss_dssp S
T ss_pred h
Confidence 3
No 249
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=23.78 E-value=1.6e+02 Score=19.90 Aligned_cols=53 Identities=6% Similarity=-0.008 Sum_probs=38.4
Q ss_pred hhccchHHHHHHHHHhCCCCCeEEEEeecCCh------HHHHHHHhhCCCCeEEEEccC
Q 030094 88 LLDMGFQKQISYIISRLPKLRRTGLFSATQTE------AVEELSKAGLRNPVRVEVRAE 140 (183)
Q Consensus 88 ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~------~v~~~~~~~~~~~~~i~~~~~ 140 (183)
.++..|...+...++...++-.++.|=+|=+. .+.+....+..+|+.+.++..
T Consensus 66 ~~d~~y~~~m~~~~k~v~~~e~iVGWY~s~~~~~~~d~~i~~~~~~~~~~pV~L~~Dp~ 124 (141)
T 4e0q_A 66 VINKDYYNKKEQQYKQVFSDLDFIGWYTTGDNPTADDIKIQRQIAAINECPIMLQLNPL 124 (141)
T ss_dssp EECHHHHHHHHHHHHHHSTTCEEEEEEEEEC-------CHHHHHHHTTCCCEEEEESCS
T ss_pred eecHHHHHHHHHHHHHhCCCccEEEEEeCCCCCCcchHHHHHHHHHHCCCCEEEEECCC
Confidence 34456888888888888777888777555332 255677788889999988776
No 250
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=23.26 E-value=1.2e+02 Score=22.61 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=12.4
Q ss_pred ceEEEEcccchhhcc
Q 030094 77 LEILVLDEADRLLDM 91 (183)
Q Consensus 77 l~~lVvDEad~ll~~ 91 (183)
-.++++||+|.+...
T Consensus 117 ~~vl~iDEi~~l~~~ 131 (310)
T 1ofh_A 117 NGIVFIDEIDKICKK 131 (310)
T ss_dssp HCEEEEECGGGGSCC
T ss_pred CCEEEEEChhhcCcc
Confidence 569999999998643
No 251
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase multiple conformers, isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Probab=23.11 E-value=2e+02 Score=21.42 Aligned_cols=86 Identities=13% Similarity=0.069 Sum_probs=44.6
Q ss_pred EEEeCcHH-HHHHHHHHHHHhhhh-C---CCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHh---cCCcCC
Q 030094 3 MIISPTRE-LSSQIYHVAQPFIST-L---PDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER---MDVLDF 74 (183)
Q Consensus 3 lIl~Ptre-La~Qi~~~~~~l~~~-~---~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~---~~~~~l 74 (183)
+++.++.+ ++....+.+.+..+. . .+-.+..+.||.+ |..+.+.+.. ...++.
T Consensus 3 ~~~~~~~~~l~~~aA~~l~~~l~~~~~~~~~~~~i~lsgGsT-------------------p~~~~~~L~~~~~~~~~~~ 63 (266)
T 1fs5_A 3 LIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGT-------------------PMTTYKALVEMHKAGQVSF 63 (266)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHHHHCCCSSSCEEEEECCSST-------------------THHHHHHHHHHHHTTSCCC
T ss_pred EEEeCCHHHHHHHHHHHHHHHHHHhhhcccCceEEEEcCCCC-------------------HHHHHHHHHHHhhcCCCCh
Confidence 56677765 666666666655442 1 0123334444443 4444444432 145788
Q ss_pred CCceEEEEcc---cchh-hccchHHHHHHHHHhCCCC
Q 030094 75 RNLEILVLDE---ADRL-LDMGFQKQISYIISRLPKL 107 (183)
Q Consensus 75 ~~l~~lVvDE---ad~l-l~~~~~~~l~~i~~~l~~~ 107 (183)
+++.++-+|| ...- -+.++....+.+++.++-.
T Consensus 64 ~~v~v~~ldEr~gv~~~~~~sn~~~~~~~l~~~~~~~ 100 (266)
T 1fs5_A 64 KHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVDIP 100 (266)
T ss_dssp TTEEEEESEEESSCCTTSTTSHHHHHHHHTGGGSCCC
T ss_pred HHeEEEeCeeccCCCCCCHHHHHHHHHHHhhccCCCC
Confidence 9999999998 2211 1122333344566666533
No 252
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=23.09 E-value=38 Score=24.83 Aligned_cols=44 Identities=23% Similarity=0.246 Sum_probs=28.3
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecC
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~ 117 (183)
..+-+++++||--.-+|......+..+++.+.+...+++++..-
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd 192 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE 192 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 45567888888888887777777777766664323455554433
No 253
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1
Probab=22.98 E-value=1.1e+02 Score=23.44 Aligned_cols=88 Identities=16% Similarity=0.081 Sum_probs=45.4
Q ss_pred EEEeCcHH-HHHHHHHHHHHhhhh-CC---CceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCc
Q 030094 3 MIISPTRE-LSSQIYHVAQPFIST-LP---DVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (183)
Q Consensus 3 lIl~Ptre-La~Qi~~~~~~l~~~-~~---~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l 77 (183)
+++.++.+ ++....+.+.+..+. .. +..+..+.||.....-.+.+. ..... ..++++++
T Consensus 3 i~i~~~~~~la~~aA~~i~~~i~~~~~~~~~~~~lglsgGsTp~~~~~~L~---------------~~~~~-~~i~~~~v 66 (289)
T 1ne7_A 3 LIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLI---------------EYYKN-GDLSFKYV 66 (289)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHHCCBTTBCEEEEECCSHHHHHHHHHHH---------------HHHHT-TSCCCTTE
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEcCCccHHHHHHHHH---------------hhhhc-cCCCchhe
Confidence 56777755 777777766665543 11 112344455444333333321 11122 56889999
Q ss_pred eEEEEcccchhh----ccchHHHHHHHHHhCCC
Q 030094 78 EILVLDEADRLL----DMGFQKQISYIISRLPK 106 (183)
Q Consensus 78 ~~lVvDEad~ll----~~~~~~~l~~i~~~l~~ 106 (183)
.++-+||-=-+- +.++....+.+++.++-
T Consensus 67 ~v~~lDEr~gv~~~~~~Sn~~~~~~~l~~~~~~ 99 (289)
T 1ne7_A 67 KTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDI 99 (289)
T ss_dssp EEEESEEETTSCTTSTTSHHHHHHHHTGGGSCC
T ss_pred EEEeCceeecCCCCcHHHHHHHHHHHhhccCCC
Confidence 999999842111 11233334456666653
No 254
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=22.90 E-value=95 Score=24.57 Aligned_cols=12 Identities=42% Similarity=0.803 Sum_probs=10.8
Q ss_pred eEEEEcccchhh
Q 030094 78 EILVLDEADRLL 89 (183)
Q Consensus 78 ~~lVvDEad~ll 89 (183)
.++++||+|.++
T Consensus 209 ~il~iDEid~l~ 220 (389)
T 3vfd_A 209 SIIFIDQVDSLL 220 (389)
T ss_dssp EEEEEETGGGGC
T ss_pred eEEEEECchhhc
Confidence 689999999985
No 255
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=22.89 E-value=68 Score=22.67 Aligned_cols=43 Identities=23% Similarity=0.309 Sum_probs=22.3
Q ss_pred Cce--EEEEcccchhh--ccchHHHHHHHHHhCC-CCCeEEEEeecCC
Q 030094 76 NLE--ILVLDEADRLL--DMGFQKQISYIISRLP-KLRRTGLFSATQT 118 (183)
Q Consensus 76 ~l~--~lVvDEad~ll--~~~~~~~l~~i~~~l~-~~~Q~v~~SAT~~ 118 (183)
+.+ ++|+||...++ +......+...+..+. ...-++++++...
T Consensus 121 ~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 121 GYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp CSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred CCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 467 99999999887 4333333333333332 2223555555444
No 256
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=22.88 E-value=90 Score=25.46 Aligned_cols=12 Identities=33% Similarity=0.426 Sum_probs=10.6
Q ss_pred eEEEEcccchhh
Q 030094 78 EILVLDEADRLL 89 (183)
Q Consensus 78 ~~lVvDEad~ll 89 (183)
+.+++||||.|-
T Consensus 297 ~VliIDEa~~l~ 308 (456)
T 2c9o_A 297 GVLFVDEVHMLD 308 (456)
T ss_dssp CEEEEESGGGCB
T ss_pred eEEEEechhhcC
Confidence 589999999984
No 257
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=22.59 E-value=85 Score=24.26 Aligned_cols=15 Identities=33% Similarity=0.512 Sum_probs=12.0
Q ss_pred CceEEEEcccchhhc
Q 030094 76 NLEILVLDEADRLLD 90 (183)
Q Consensus 76 ~l~~lVvDEad~ll~ 90 (183)
.-.++++||+|.+..
T Consensus 105 ~~~vl~iDEid~l~~ 119 (322)
T 1xwi_A 105 KPSIIFIDEIDSLCG 119 (322)
T ss_dssp SSEEEEEETTTGGGC
T ss_pred CCcEEEeecHHHhcc
Confidence 346899999999953
No 258
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=22.31 E-value=56 Score=21.19 Aligned_cols=56 Identities=16% Similarity=0.174 Sum_probs=35.3
Q ss_pred eEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHHhcCCcCCCCceEEEEcccch
Q 030094 30 KSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADR 87 (183)
Q Consensus 30 ~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~~~~~~~l~~l~~lVvDEad~ 87 (183)
++.-+......+.....+...++++.+-+|.-+.+-+++ +.+-+-+ .+.++-.||.
T Consensus 45 ~vTHvIt~~~~d~~~~~a~~~~p~~~~V~P~WI~~Ci~~-~klvp~~-~y~~~~~~~~ 100 (104)
T 3pc6_A 45 RVQFVITAQEWDPNFEEALMENPSLAFVRPRWIYSCNEK-QKLLPHQ-LYGVVPQAHH 100 (104)
T ss_dssp TCCEEEESSCCCHHHHHHHTTCTTCEEECHHHHHHHHHH-TSCCCGG-GGBCCCCGGG
T ss_pred CceEEEeCCCCChhHHHHhhhCCCCeEEccHHHHHHHhc-CccCCcc-cceecchhhc
Confidence 344444444444445555567899999999999999988 5443322 4555555553
No 259
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=22.26 E-value=19 Score=27.34 Aligned_cols=50 Identities=24% Similarity=0.277 Sum_probs=34.9
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEE 123 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~ 123 (183)
..+-+++++||--.-+|......+..+++.+.+...+++++..-...+..
T Consensus 154 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~ 203 (266)
T 2yz2_A 154 VHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVIN 203 (266)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGG
T ss_pred HcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 45668999999999999888888888887774334456665544444333
No 260
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=22.25 E-value=1e+02 Score=25.39 Aligned_cols=55 Identities=13% Similarity=0.141 Sum_probs=39.8
Q ss_pred CCceEEEEcccchhh---ccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHHhhC
Q 030094 75 RNLEILVLDEADRLL---DMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGL 129 (183)
Q Consensus 75 ~~l~~lVvDEad~ll---~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~~~~ 129 (183)
...+++++|++-++- +..+...+..+.+...+..-+++++|+...+....++.|-
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFH 235 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHh
Confidence 367899999998653 3446677777777776666778888888776666666554
No 261
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=21.69 E-value=27 Score=26.43 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=35.4
Q ss_pred CCCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 74 FRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 74 l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
..+-+++++||--.-+|......+..+++.+.+...+++++..-...+..++.
T Consensus 169 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d 221 (262)
T 1b0u_A 169 AMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSS 221 (262)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCS
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 35568999999999888877888888777764334456665544344444433
No 262
>3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A*
Probab=21.24 E-value=1.7e+02 Score=21.80 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=34.6
Q ss_pred cHHHHHHHHHHHHHhhhhCCCceEEEEEcCcchHHHHHHHHhcCCcEEEeCcHHHHHHHH
Q 030094 8 TRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIME 67 (183)
Q Consensus 8 treLa~Qi~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~IiV~TP~~l~~~l~ 67 (183)
--+++.++++.+++. +.++..+........+.......|+|++-..|.-+.++++
T Consensus 143 G~~~v~~i~~~~~~~-----~~~T~IlaAS~Rn~~~v~~aa~~G~d~~Tip~~vl~~l~~ 197 (223)
T 3s1x_A 143 GMQIIDMIRTIFNNY-----IIKTQILVASIRNPIHVLRSAVIGADVVTVPFNVLKSLMK 197 (223)
T ss_dssp THHHHHHHHHHHHHT-----TCCSEEEEBSCCSHHHHHHHHHHTCSEEEECHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHc-----CCCCEEEEEeCCCHHHHHHHHHcCCCEEEeCHHHHHHHHc
Confidence 456777777777765 3344455555555556555335699998888866666553
No 263
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=21.08 E-value=1.3e+02 Score=21.94 Aligned_cols=13 Identities=31% Similarity=0.396 Sum_probs=11.0
Q ss_pred eEEEEcccchhhc
Q 030094 78 EILVLDEADRLLD 90 (183)
Q Consensus 78 ~~lVvDEad~ll~ 90 (183)
.++++||+|.+..
T Consensus 106 ~il~iDeid~l~~ 118 (257)
T 1lv7_A 106 CIIFIDEIDAVGR 118 (257)
T ss_dssp EEEEETTHHHHTC
T ss_pred eeehhhhhhhhcc
Confidence 5899999999864
No 264
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=21.02 E-value=1.9e+02 Score=20.09 Aligned_cols=29 Identities=17% Similarity=0.431 Sum_probs=19.7
Q ss_pred CCceEEEEcccc--hhhccchHHHHHHHHHh
Q 030094 75 RNLEILVLDEAD--RLLDMGFQKQISYIISR 103 (183)
Q Consensus 75 ~~l~~lVvDEad--~ll~~~~~~~l~~i~~~ 103 (183)
.+-+++++||++ ..++..+...+..+++.
T Consensus 98 ~~p~llilDEigp~~~ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 98 DRRKVIIIDEIGKMELFSKKFRDLVRQIMHD 128 (178)
T ss_dssp CTTCEEEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred cCCCEEEEeCCCCcccCCHHHHHHHHHHHhc
Confidence 445799999955 44555566777776664
No 265
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=20.95 E-value=63 Score=23.53 Aligned_cols=65 Identities=12% Similarity=0.197 Sum_probs=37.8
Q ss_pred HhcCCcEEEeCcHHHHHHHHh----------------cCCcCCCCceEEEEcccchhhccchHHHHHHHHHhC-CCCCeE
Q 030094 48 EEEGANLLIGTPGRLYDIMER----------------MDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRL-PKLRRT 110 (183)
Q Consensus 48 ~~~~~~IiV~TP~~l~~~l~~----------------~~~~~l~~l~~lVvDEad~ll~~~~~~~l~~i~~~l-~~~~Q~ 110 (183)
...|-+|.|-+|..-...--. .....+..=..+|||||..|- ..++..+++.. ..+.|+
T Consensus 77 ~~~Gr~V~vLAp~~~s~~~l~~~~~l~~~t~t~~~ll~~~~~~tp~s~lIVD~AekLS----~kE~~~Lld~A~~~naqv 152 (189)
T 2l8b_A 77 REQGREVQIIAADRRSQMNMKQDERLSGELITGRRQLLEGMAFTPGSTVIVDQGEKLS----LKETLTLLDGAARHNVQV 152 (189)
T ss_dssp HHTTCCEEEECSTTHHHHHHSCTTTCSSCSSSTTTTTTTSCCCCCCCEEEEEESSSHH----HHHHHHHHHHHHHTTCCE
T ss_pred HhcCeEEEEEcCchHHHHHHHhhcCcCcceeehhhhhcCCCCCCCCCEEEEechhhcC----HHHHHHHHHHHHhcCCEE
Confidence 346778888888765443211 011112333589999999983 44555555443 346787
Q ss_pred EEEeec
Q 030094 111 GLFSAT 116 (183)
Q Consensus 111 v~~SAT 116 (183)
|++--+
T Consensus 153 vll~~~ 158 (189)
T 2l8b_A 153 LITDSG 158 (189)
T ss_dssp EEEESS
T ss_pred EEeCCc
Confidence 776544
No 266
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=20.36 E-value=66 Score=24.33 Aligned_cols=49 Identities=22% Similarity=0.257 Sum_probs=36.1
Q ss_pred CCceEEEEcccchhhccchHHHHHHHHHhCCCCCeEEEEeecCChHHHHHHH
Q 030094 75 RNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (183)
Q Consensus 75 ~~l~~lVvDEad~ll~~~~~~~l~~i~~~l~~~~Q~v~~SAT~~~~v~~~~~ 126 (183)
.+-+++++||--.-+|......+..+++.+.+ +++++..-.+.+..++.
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~~~~~~~d 193 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELDMLNLYKE 193 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGGGGGGCTT
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHHHHHHhcC
Confidence 45579999999999988888889888888854 77776654444444443
Done!