Query 030096
Match_columns 183
No_of_seqs 154 out of 1162
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 08:27:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030096.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030096hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00568 alkb DNA alkylation 100.0 1.5E-28 3.2E-33 195.5 13.2 129 43-177 2-142 (169)
2 PRK15401 alpha-ketoglutarate-d 99.9 4E-27 8.6E-32 193.1 15.3 134 31-175 14-161 (213)
3 PF13532 2OG-FeII_Oxy_2: 2OG-F 99.9 2.7E-23 5.8E-28 166.2 11.8 133 38-175 1-142 (194)
4 COG3145 AlkB Alkylated DNA rep 99.9 6.5E-22 1.4E-26 159.9 11.5 137 30-176 10-152 (194)
5 KOG3200 Uncharacterized conser 98.9 1.4E-08 3E-13 81.0 10.3 114 38-173 13-129 (224)
6 PF12933 FTO_NTD: FTO catalyti 97.8 3.7E-05 7.9E-10 64.3 5.9 118 44-164 21-189 (253)
7 KOG4176 Uncharacterized conser 97.2 0.002 4.3E-08 56.3 8.3 126 38-181 129-259 (323)
8 KOG3959 2-Oxoglutarate- and ir 92.7 0.15 3.2E-06 43.1 3.9 109 38-162 73-185 (306)
9 PRK05467 Fe(II)-dependent oxyg 88.2 5.1 0.00011 33.4 9.2 28 39-67 2-29 (226)
10 KOG2731 DNA alkylation damage 84.7 1.9 4.1E-05 38.4 5.0 63 109-174 194-261 (378)
11 PLN00052 prolyl 4-hydroxylase; 80.1 40 0.00086 29.4 11.9 102 25-148 42-151 (310)
12 smart00702 P4Hc Prolyl 4-hydro 75.5 35 0.00076 26.3 11.1 23 38-60 2-24 (178)
13 PF03171 2OG-FeII_Oxy: 2OG-Fe( 68.1 4.4 9.5E-05 28.2 2.2 40 128-174 2-45 (98)
14 KOG2731 DNA alkylation damage 47.5 8.9 0.00019 34.2 1.0 48 126-175 313-363 (378)
15 TIGR01762 chlorin-enz chlorina 40.2 60 0.0013 27.8 4.9 24 38-61 15-38 (288)
16 PF12088 DUF3565: Protein of u 32.5 32 0.0007 22.9 1.6 27 142-175 1-27 (61)
17 cd06397 PB1_UP1 Uncharacterize 28.9 57 0.0012 23.0 2.4 61 108-171 19-79 (82)
18 TIGR02408 ectoine_ThpD ectoine 26.9 1.1E+02 0.0023 25.8 4.3 24 38-61 29-52 (277)
19 PF13640 2OG-FeII_Oxy_3: 2OG-F 26.5 26 0.00055 24.3 0.4 19 130-149 1-19 (100)
20 KOG1759 Macrophage migration i 25.3 99 0.0022 23.2 3.3 35 111-145 76-110 (115)
21 PRK09553 tauD taurine dioxygen 25.0 74 0.0016 26.8 3.0 41 46-86 211-260 (277)
22 PF13661 2OG-FeII_Oxy_4: 2OG-F 24.9 88 0.0019 20.6 2.8 22 130-152 13-34 (70)
23 KOG4417 Predicted endonuclease 22.6 86 0.0019 26.3 2.8 46 38-83 84-133 (261)
24 PF09793 AD: Anticodon-binding 22.1 1.1E+02 0.0024 21.4 3.0 26 49-74 34-62 (91)
No 1
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=99.96 E-value=1.5e-28 Score=195.46 Aligned_cols=129 Identities=21% Similarity=0.306 Sum_probs=105.1
Q ss_pred CCCCCHHHHHHHHHHHhhc---CCCCCceeeecCCcccccceee----EecCCCCcceeccCCCC-CCCCCCCCch-HHH
Q 030096 43 PRIIKMEDSWKFFDYLNNR---IPWNRPTIRVFGRSCLQPRDTC----YVASEGVTQLIYSGYRP-HPYSWDDFPP-LKD 113 (183)
Q Consensus 43 ~~fl~~~~a~~L~~~L~~~---~~w~~~~~~~~Gk~~~~pR~~~----wy~~~~~~~Y~Ysg~~~-~~~~wp~~P~-ll~ 113 (183)
.+++....+..|.+++++. .+|+| .++++||++.+||+++ |+++ +. .|.|++..+ ...+||++|. |.+
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~~w~~-~~~~~gk~~~~pr~~~~~l~W~~~-g~-~Y~ys~~~~~~~~~~p~~P~~L~~ 78 (169)
T TIGR00568 2 KRYFAFNAQEQLIRDINDVASQDPFRQ-YVTPGGYTMSVAMTNLGKLGWTTH-GQ-GYLYSPKDPQTNKPWPAMPQDLGD 78 (169)
T ss_pred CCccChHHHHHHHHHHHHHhhcCCCcC-eEecCCeEeeehhhhcccceEEcC-CC-cccCCCcccCCCCCCCCCCHHHHH
Confidence 4678888888888877753 68999 5899999999999996 9999 66 699999976 4456665555 666
Q ss_pred HHHHHHhhcCCC---CCcEEEEceeCCCCCCccccccCCCCcCCCCcEEEEEcCCceeeEEeeCCCC
Q 030096 114 ILDIVLKVLPGS---RFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 177 (183)
Q Consensus 114 l~~~~~e~~~g~---~fn~~LvN~Y~~G~d~ig~HsD~e~~lg~~~~IasvSLGa~R~F~~r~k~~~ 177 (183)
++.++ ++.++. .||+||||+|++| ++||||+|+ ..++.+++|||||||++|.|.|+++..+
T Consensus 79 L~~~v-~~~~g~~~~~~n~~LvN~Y~~G-d~mg~H~D~-~e~~~~~pI~SvSLG~~r~F~~~~~~~~ 142 (169)
T TIGR00568 79 LCERV-ATAAGFPDFQPDACLVNRYAPG-ATLSLHQDR-DEPDLRAPLLSVSLGLPAIFLIGGLKRN 142 (169)
T ss_pred HHHHH-HHHhCCCCCCCCEEEEEeecCC-Ccccccccc-ccccCCCCEEEEeCCCCEEEEecCCcCC
Confidence 55444 556665 8999999999998 999999994 5678899999999999999999987543
No 2
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=99.95 E-value=4e-27 Score=193.07 Aligned_cols=134 Identities=19% Similarity=0.269 Sum_probs=109.7
Q ss_pred EeCCCCccEEEeCCCCCHHHHHHHHHHHhh---cCCCCCceeeecCCccccccee-----eEecCCCCcceeccCCC-CC
Q 030096 31 VDLGNGSEVIYFPRIIKMEDSWKFFDYLNN---RIPWNRPTIRVFGRSCLQPRDT-----CYVASEGVTQLIYSGYR-PH 101 (183)
Q Consensus 31 ~~l~~~~~~~~~~~fl~~~~a~~L~~~L~~---~~~w~~~~~~~~Gk~~~~pR~~-----~wy~~~~~~~Y~Ysg~~-~~ 101 (183)
..|.+| +.++++|. .+++++|++.|++ +++|++ ..++|+..+++|++ +||+|.. .|+|++.. ..
T Consensus 14 ~~~~~g--~~~~~~~~-~~~~~~l~~~~~~~~~~~p~~~--~~~~gg~~msv~mt~~G~~~W~~d~~--~YrYs~~~~~~ 86 (213)
T PRK15401 14 EPLAPG--AVLLRGFA-LAAAEALLAAIEAVAAQAPFRH--MVTPGGYTMSVAMTNCGALGWVTDRR--GYRYSPIDPLT 86 (213)
T ss_pred eecCCC--cEEeCCCC-HHHHHHHHHHHHHHHhcCCccc--eecCCCCcceeEEeccccceEecCCC--CcccCCcCCCC
Confidence 557664 89999996 7889999999998 789988 56778889999999 8999874 69999986 67
Q ss_pred CCCCCCCch-HHHHHHHHHhhcCC---CCCcEEEEceeCCCCCCccccccC-CCCcCCCCcEEEEEcCCceeeEEeeCC
Q 030096 102 PYSWDDFPP-LKDILDIVLKVLPG---SRFNSLLLNRYKGGNDYVGWHADD-EKLYGSTPEIASVSFGCERDFLLKIKP 175 (183)
Q Consensus 102 ~~~wp~~P~-ll~l~~~~~e~~~g---~~fn~~LvN~Y~~G~d~ig~HsD~-e~~lg~~~~IasvSLGa~R~F~~r~k~ 175 (183)
+.+||++|. |.+++.++ +...+ ..||+||||+|++|+ +||||+|+ |.. .+++|||||||++|.|+|+++.
T Consensus 87 ~~pwp~~P~~l~~L~~~~-~~~~~~~~~~p~a~LvN~Y~~G~-~mg~H~D~~E~~--~~~pI~SvSLG~~~~F~~~~~~ 161 (213)
T PRK15401 87 GKPWPAMPASFLALAQRA-AAAAGFPGFQPDACLINRYAPGA-KLSLHQDKDERD--FRAPIVSVSLGLPAVFQFGGLK 161 (213)
T ss_pred CCCCCCchHHHHHHHHHH-HHHcCCCCCCCCEEEEEeccCcC-ccccccCCCccc--CCCCEEEEeCCCCeEEEecccC
Confidence 889997775 55555444 43445 489999999999985 99999996 443 5678999999999999998653
No 3
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=99.90 E-value=2.7e-23 Score=166.18 Aligned_cols=133 Identities=32% Similarity=0.594 Sum_probs=95.4
Q ss_pred cEEEeCCCCCHHHHHHHHHHHhhcCCCCCceeeecCCcccccce----eeEecCCCCcceeccCC-CCCCCCCCCCch-H
Q 030096 38 EVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRD----TCYVASEGVTQLIYSGY-RPHPYSWDDFPP-L 111 (183)
Q Consensus 38 ~~~~~~~fl~~~~a~~L~~~L~~~~~w~~~~~~~~Gk~~~~pR~----~~wy~~~~~~~Y~Ysg~-~~~~~~wp~~P~-l 111 (183)
++.|+++||+.+++.+|++.|.+..+|.+.+... ++.+..+|. ..|++.. . .|.|++. .....+|+++|. +
T Consensus 1 G~~~~~~fls~~e~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~-~y~y~~~~~~~~~~~~~~p~~l 77 (194)
T PF13532_consen 1 GLYYIPNFLSEEEAAELLNELRESAPFRQPTYPM-GKVYSLPRKLCGGLSWVGDG-P-SYRYSGKRPVRSKPWPPFPEWL 77 (194)
T ss_dssp -EEEETTSS-HHHHHHHHHHHHHHS--B-GCCCC-CCECCECCE-SSEEEEEECT----CCCTCC-EECCCEBSCCHHHH
T ss_pred CEEEECCCCCHHHHHHHHHHHHhhCCCcCCeEcC-CCEEccceecceeeEEECCC-C-CeEcCCccccCCCCCCCccHHH
Confidence 4899999999999999999999999998887665 788888776 4687754 3 5999987 556667775555 5
Q ss_pred HHHHHHHHhhc---CCCCCcEEEEceeCCCCCCccccccCCCCcCCCCcEEEEEcCCceeeEEeeCC
Q 030096 112 KDILDIVLKVL---PGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKP 175 (183)
Q Consensus 112 l~l~~~~~e~~---~g~~fn~~LvN~Y~~G~d~ig~HsD~e~~lg~~~~IasvSLGa~R~F~~r~k~ 175 (183)
.+++.++.+.. .++.||+||||+|++|+ +|++|+|++ .++.+++||+||||++|.|.|+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~n~~liN~Y~~g~-~i~~H~D~~-~~~~~~~I~slSLG~~~~~~f~~~~ 142 (194)
T PF13532_consen 78 SRLLERLVEATGIPPGWRPNQCLINYYRDGS-GIGPHSDDE-EYGFGPPIASLSLGSSRVFRFRNKS 142 (194)
T ss_dssp HHHHHHHHHHHT-SHSS--SEEEEEEESSTT--EEEE---T-TC-CCSEEEEEEEES-EEEEEEECG
T ss_pred HHHHHHHHHHhccccCCCCCEEEEEecCCCC-CcCCCCCcc-cccCCCcEEEEEEccCceEEEeecc
Confidence 66666554422 36889999999999986 999999999 4478999999999999999999764
No 4
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=99.87 E-value=6.5e-22 Score=159.86 Aligned_cols=137 Identities=26% Similarity=0.470 Sum_probs=102.5
Q ss_pred EEeCCCCccEEEeCCCC--CHHHHHHHHHHHhhcCCCCCceeeecCCcccccceeeEecCCCCcceeccCCCCCC-CCCC
Q 030096 30 VVDLGNGSEVIYFPRII--KMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHP-YSWD 106 (183)
Q Consensus 30 ~~~l~~~~~~~~~~~fl--~~~~a~~L~~~L~~~~~w~~~~~~~~Gk~~~~pR~~~wy~~~~~~~Y~Ysg~~~~~-~~wp 106 (183)
...+++| +.+.++|+ ...+..+.+..+..+.||.+..++++||.+.++|..+|+++ .. .|.|++....+ .+||
T Consensus 10 ~~~~~~G--~~~~~~~~~~~~~~l~~~l~~~~~~~P~~~~~~~~~g~~~sV~r~~~W~~d-~~-gy~y~~~~p~~~~p~p 85 (194)
T COG3145 10 RRQLAPG--AVILPGFLLLTQGALVAALLFLLSQAPWFRPRRTPYGKPMSVPRLLGWVTD-RR-GYRYSLRSPLTGKPWP 85 (194)
T ss_pred cccCCCC--eEEEecccccchHHHHHHHHHhcccCcccceeecCCCcEeeeeeccceecc-cc-cccccccccCCCCCCC
Confidence 3445555 66677766 22233334456667789999999999999999999999998 44 69999988655 5676
Q ss_pred CCchHHHHHHHHHhhcCCCCCcE---EEEceeCCCCCCccccccCCCCcCCCCcEEEEEcCCceeeEEeeCCC
Q 030096 107 DFPPLKDILDIVLKVLPGSRFNS---LLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPS 176 (183)
Q Consensus 107 ~~P~ll~l~~~~~e~~~g~~fn~---~LvN~Y~~G~d~ig~HsD~e~~lg~~~~IasvSLGa~R~F~~r~k~~ 176 (183)
.+..+...+ ....|..++. ||+|+|++| |+||||+|.+..... ++|||||||++|.|+|+++..
T Consensus 86 ---~l~~~~~~~-~~~~g~~~~~~ea~Lvn~Y~pG-d~ig~HqD~~e~~~~-~~v~slSLg~~~~F~~~~~~r 152 (194)
T COG3145 86 ---PLLALFHDL-FGAAGYPFEGPEAVLVNRYRPG-ASIGWHQDKDEEDDR-PPVASLSLGAPCIFRLRGRRR 152 (194)
T ss_pred ---ccHHHHHHH-HHHhcCCCCChhheeEEeccCC-CccccccccccccCC-CceEEEecCCCeEEEeccccC
Confidence 444433333 2235655555 999999998 999999999887554 899999999999999998763
No 5
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=1.4e-08 Score=81.00 Aligned_cols=114 Identities=23% Similarity=0.295 Sum_probs=82.1
Q ss_pred cEEEeCCCCCHHHHHHHHHHHhhc--CCCCCceeeecCCcccccceeeEecCCCCcceeccCCCCCCCCCCCCchHHHHH
Q 030096 38 EVIYFPRIIKMEDSWKFFDYLNNR--IPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDIL 115 (183)
Q Consensus 38 ~~~~~~~fl~~~~a~~L~~~L~~~--~~w~~~~~~~~Gk~~~~pR~~~wy~~~~~~~Y~Ysg~~~~~~~wp~~P~ll~l~ 115 (183)
.+-|+|+|++.+|...++.++... -.|++ ....|++.|-|-.+. .| +.|...| |+|..+.
T Consensus 13 t~~YIPnfIt~EEe~~~lshIe~ap~pkW~~---------L~NRRLqNyGGvvh~-----~g--lipeelP--~wLq~~v 74 (224)
T KOG3200|consen 13 TMIYIPNFITEEEENLYLSHIENAPQPKWRV---------LANRRLQNYGGVVHK-----TG--LIPEELP--PWLQYYV 74 (224)
T ss_pred eEEEcCCccChHHHHHHHHHHhcCCCchhHH---------HHhhhhhhcCCcccc-----CC--cCccccC--HHHHHHH
Confidence 479999999999988888887543 24644 233466666553221 12 2345555 5666666
Q ss_pred HHHHh-hcCCCCCcEEEEceeCCCCCCccccccCCCCcCCCCcEEEEEcCCceeeEEee
Q 030096 116 DIVLK-VLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKI 173 (183)
Q Consensus 116 ~~~~e-~~~g~~fn~~LvN~Y~~G~d~ig~HsD~e~~lg~~~~IasvSLGa~R~F~~r~ 173 (183)
.+++. .+.+...|++|||.|..| .+|.-|.|...+ .|+|++||||+...+.|-.
T Consensus 75 ~kinnlglF~s~~NHVLVNeY~pg-qGImPHtDGPaf---~piVstiSlGsh~vldf~~ 129 (224)
T KOG3200|consen 75 DKINNLGLFKSPANHVLVNEYLPG-QGIMPHTDGPAF---HPIVSTISLGSHTVLDFYD 129 (224)
T ss_pred HHhhcccccCCCcceeEeecccCC-CCcCcCCCCCcc---cceEEEEecCCceEEeccc
Confidence 77753 123457899999999997 699999999886 7899999999999999854
No 6
>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family. This enzyme is a dioxygenase that repairs alkylated DNA and RNA by oxidative demethylation []. FTO activity is highest towards single-stranded RNA containing 3-methyluracil, followed by single-stranded DNA containing 3-methylthymine. FTO has low demethylase activity towards single-stranded DNA containing 1-methyladenine or 3-methylcytosine []. FTO has no activity towards 1-methylguanine. It has no detectable activity towards double-stranded DNA. FTO requires molecular oxygen, alpha-ketoglutarate and iron. FTO contributes to the regulation of the global metabolic rate, energy expenditure and energy homeostasis. It contributes to the regulation of body size and body fat accumulation as well []. This domain is the catalytic AlkB-like domain from the FTO protein []. This domain catalyses a demethylase activity with a preference for 3-methylthymidine.; PDB: 3LFM_A.
Probab=97.83 E-value=3.7e-05 Score=64.29 Aligned_cols=118 Identities=23% Similarity=0.349 Sum_probs=63.6
Q ss_pred CCCCHH---HHHHHHHHHhhcCCCCCceeeecCCcccccceeeEecCCCCcceeccCCCCCCCCCCCC--------chHH
Q 030096 44 RIIKME---DSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDF--------PPLK 112 (183)
Q Consensus 44 ~fl~~~---~a~~L~~~L~~~~~w~~~~~~~~Gk~~~~pR~~~wy~~~~~~~Y~Ysg~~~~~~~wp~~--------P~ll 112 (183)
+-|+.+ +..+-|..|++.=-|.++.+++-||....+=.-...|++|.+ |.|-+...=+.||+.- |.+.
T Consensus 21 ~~lP~~lH~~vq~Af~tL~~~Gcf~~Dlvr~~~k~~~T~VsR~L~G~pG~T-YkYl~~RLFa~PW~~~~~~~~~~~~~i~ 99 (253)
T PF12933_consen 21 ESLPEELHEEVQEAFDTLRKHGCFFRDLVRIGGKDSFTPVSRTLLGEPGCT-YKYLNTRLFAVPWPDEGSEIKYQSPEIR 99 (253)
T ss_dssp GGS-HHHHHHHHHHHHHHHHTT--B--EE-GGG--EE-SSEEEEEESTTBE-EEETTEEEE-EE-------------HHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCchHHHHHhhCCccccceeehhhcCCCCce-eEecceeEEeccCCCCCcccccCChhHH
Confidence 345543 455567888777779999999999988887777899999994 9999988778899741 2332
Q ss_pred HHHH---HHHh-----------hc----------CCCCCcEEEEceeCC----------------CCCCccccccCCCCc
Q 030096 113 DILD---IVLK-----------VL----------PGSRFNSLLLNRYKG----------------GNDYVGWHADDEKLY 152 (183)
Q Consensus 113 ~l~~---~~~e-----------~~----------~g~~fn~~LvN~Y~~----------------G~d~ig~HsD~e~~l 152 (183)
...+ ++++ +. ....||.+|||+++. |+-+||||+|...
T Consensus 100 ~a~~al~~LN~~L~~~~~~~l~~~~~~~~~~~~~~~~~fNvTLlN~MdP~~~~~~~LK~Ep~fgmGKmaVsWH~DenL-- 177 (253)
T PF12933_consen 100 SACKALGKLNDYLCSRAVQALEGRRLARVEEDEVGSCEFNVTLLNYMDPSSQAMPDLKEEPYFGMGKMAVSWHHDENL-- 177 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------------EEEEEEE-S--S-SSS--B-SSS---BEEEEEE---SB--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccceeeehhhhhccCcccccccccccccccCCcceeeeecccccc--
Confidence 2211 1111 00 113699999999987 5668999999864
Q ss_pred CCCCcEEEEEcC
Q 030096 153 GSTPEIASVSFG 164 (183)
Q Consensus 153 g~~~~IasvSLG 164 (183)
.+.++||..|.-
T Consensus 178 ~~~StVAVY~~s 189 (253)
T PF12933_consen 178 VERSTVAVYSYS 189 (253)
T ss_dssp -TT--EEEEEEE
T ss_pred ccccceEEEEec
Confidence 478899988753
No 7
>KOG4176 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.002 Score=56.30 Aligned_cols=126 Identities=17% Similarity=0.156 Sum_probs=72.3
Q ss_pred cEEEeCCCCCHHHHHHHHHHHhhcCCCCCceeeecCCcccccceeeEecCCCCcceeccCCCCC----CCCCCCCchHHH
Q 030096 38 EVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPH----PYSWDDFPPLKD 113 (183)
Q Consensus 38 ~~~~~~~fl~~~~a~~L~~~L~~~~~w~~~~~~~~Gk~~~~pR~~~wy~~~~~~~Y~Ysg~~~~----~~~wp~~P~ll~ 113 (183)
.+.++++|++..+...+...+..+. |.. ++-||. |.+--|+- .+.|.-.... ..+.| +.+..
T Consensus 129 e~~~~~d~V~el~e~~l~~~~~~e~-~~~---~~~gk~----R~~iq~G~----~f~y~~~~~d~~~~~~piP--s~~~~ 194 (323)
T KOG4176|consen 129 ELSLIVDFVTELEEKGLIGALVDET-FTY---QESGKH----REVIQLGY----PFDYRTNNVDESKPVDPIP--SLFKS 194 (323)
T ss_pred hceehhhhhhhhHHhhhhccccccc-cee---eccccc----eeeeecCc----eeccCCCcccccCccCCCc--hHHHH
Confidence 5888888888665555544443321 211 222432 22222221 2333221110 12233 24455
Q ss_pred HHHHHHhh-cCCCCCcEEEEceeCCCCCCccccccCCCCcCCCCcEEEEEcCCceeeEEeeCCCCCCCC
Q 030096 114 ILDIVLKV-LPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQG 181 (183)
Q Consensus 114 l~~~~~e~-~~g~~fn~~LvN~Y~~G~d~ig~HsD~e~~lg~~~~IasvSLGa~R~F~~r~k~~~~~~~ 181 (183)
++.+++.- .+...+|+|.||.|..| ++|--|-|-... + .+|++|||=.++++.|++.-.....|
T Consensus 195 ii~rlv~~~~ip~~pd~~~iN~Ye~G-~~i~ph~~~~~F-~--~Pi~slS~lSe~~m~Fg~~~~~~~~~ 259 (323)
T KOG4176|consen 195 IIDRLVSWRVIPERPDQCTINFYEPG-DGIPPHIDHSAF-L--DPISSLSFLSECTMEFGHGLLSDNIG 259 (323)
T ss_pred HHHHhhhhccCCCCCCeeEEEeeCCC-CCCCCCCChHHh-c--CceEEEEeecceeEEecccccccCcc
Confidence 55554331 12335999999999996 799999965544 3 36999999999999999876554443
No 8
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=92.74 E-value=0.15 Score=43.06 Aligned_cols=109 Identities=15% Similarity=0.313 Sum_probs=65.0
Q ss_pred cEEEeCCCCCHHHHHHHHHHHhhcCCCCCceeeecCCcccccceeeEecCCCCcceeccCCCCCCCCCCCCchHHHHHHH
Q 030096 38 EVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDI 117 (183)
Q Consensus 38 ~~~~~~~fl~~~~a~~L~~~L~~~~~w~~~~~~~~Gk~~~~pR~~~wy~~~~~~~Y~Ysg~~~~~~~wp~~P~ll~l~~~ 117 (183)
++.++.+||+.+|..+|+..| ..+||.+.+ -|+ |.+ =||.. -.+...+.....|--+|...+....
T Consensus 73 G~~lie~Fls~~Eea~l~~~~-D~~pW~~SQ---SGR-----RKQ-dyGPK----vNFkk~Klkt~~F~G~P~~~~~v~r 138 (306)
T KOG3959|consen 73 GLTLIENFLSESEEAKLLNMI-DTVPWAQSQ---SGR-----RKQ-DYGPK----VNFKKKKLKTDTFVGMPEYADMVLR 138 (306)
T ss_pred CeeehhhhhccchHhHHHHHh-ccCchhhhc---ccc-----ccc-ccCCc----cchhhhhhccCcccCCchHHHHHHH
Confidence 499999999999988888776 889998753 243 333 34421 1122222223233333555544322
Q ss_pred HHhhcC---C-CCCcEEEEceeCCCCCCccccccCCCCcCCCCcEEEEE
Q 030096 118 VLKVLP---G-SRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVS 162 (183)
Q Consensus 118 ~~e~~~---g-~~fn~~LvN~Y~~G~d~ig~HsD~e~~lg~~~~IasvS 162 (183)
..+... | .+|..|=+.|=..-+..|..|.||-=..|+. ++++.
T Consensus 139 rm~~yp~l~gfqp~EqCnLeYep~kgsaIdpH~DD~WiWGeR--lv~~n 185 (306)
T KOG3959|consen 139 RMSEYPVLKGFQPFEQCNLEYEPVKGSAIDPHQDDMWIWGER--LVRSN 185 (306)
T ss_pred HhhccchhhccCcHHHcCcccccccCCccCccccchhhhhhh--eeehh
Confidence 223222 2 4577787776666678999999997666654 44443
No 9
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=88.18 E-value=5.1 Score=33.38 Aligned_cols=28 Identities=14% Similarity=0.387 Sum_probs=22.5
Q ss_pred EEEeCCCCCHHHHHHHHHHHhhcCCCCCc
Q 030096 39 VIYFPRIIKMEDSWKFFDYLNNRIPWNRP 67 (183)
Q Consensus 39 ~~~~~~fl~~~~a~~L~~~L~~~~~w~~~ 67 (183)
+..+|++|+++++..+.+.| +...|...
T Consensus 2 i~~I~~vLs~eec~~~~~~l-e~~~~~dg 29 (226)
T PRK05467 2 LLHIPDVLSPEEVAQIRELL-DAAEWVDG 29 (226)
T ss_pred eeeecccCCHHHHHHHHHHH-HhcCCccC
Confidence 45789999999999998888 44678653
No 10
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]
Probab=84.68 E-value=1.9 Score=38.37 Aligned_cols=63 Identities=27% Similarity=0.239 Sum_probs=44.8
Q ss_pred chHHHHHHHHHhhcCC---CC-CcEEEEceeCCCCCCccccccC-CCCcCCCCcEEEEEcCCceeeEEeeC
Q 030096 109 PPLKDILDIVLKVLPG---SR-FNSLLLNRYKGGNDYVGWHADD-EKLYGSTPEIASVSFGCERDFLLKIK 174 (183)
Q Consensus 109 P~ll~l~~~~~e~~~g---~~-fn~~LvN~Y~~G~d~ig~HsD~-e~~lg~~~~IasvSLGa~R~F~~r~k 174 (183)
|.++.+.++.+.+.++ +. ....|.|||.-+ +.++.|-|. |. +...++.+.|||..+.|.+.-.
T Consensus 194 ~~ll~~~~~~~~~a~~~~~~~~~~Gli~nYlsi~-~tl~ih~d~rel--d~~~pf~s~s~g~~ai~lLg~m 261 (378)
T KOG2731|consen 194 PSLLGLLREKVKAAKGFSHIVIRPGLIKNYLSID-DTLGIHLDCREL--DLSKPFYSPSLGQGAILLLGMM 261 (378)
T ss_pred hHHhhhhhhhhhhhcCccceeccCcceeeecccC-cEEEEEeehhhc--ccCCccccccccccceeeeccc
Confidence 4666665544333333 22 355799999995 899999986 44 4555699999999999999654
No 11
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=80.11 E-value=40 Score=29.42 Aligned_cols=102 Identities=12% Similarity=0.124 Sum_probs=55.3
Q ss_pred cccceEEeCCCCccEEEeCCCCCHHHHHHHHHHHhhcCCCCCceeee--cCCcccccceee---EecCCCCcceeccCCC
Q 030096 25 KKQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRV--FGRSCLQPRDTC---YVASEGVTQLIYSGYR 99 (183)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~fl~~~~a~~L~~~L~~~~~w~~~~~~~--~Gk~~~~pR~~~---wy~~~~~~~Y~Ysg~~ 99 (183)
....++..|.-...|.++++||+.+|++.|.+.-.. .+++.++.- -|+......+++ |+.+
T Consensus 42 ~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~--~l~~S~v~~~~~g~~~~s~~RTS~~~~l~~------------ 107 (310)
T PLN00052 42 FNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKK--KIQRSMVADNKSGKSVMSEVRTSSGMFLDK------------ 107 (310)
T ss_pred cCCceEEEecCCCCEEEECCcCCHHHHHHHHHhccc--ccccceeecCCCCccccCCCEEecceeecC------------
Confidence 344455555555579999999999999988765533 233322211 133222222221 2211
Q ss_pred CCCCCCCCCchHHHHHHHHHhhcCCCCC---cEEEEceeCCCCCCccccccC
Q 030096 100 PHPYSWDDFPPLKDILDIVLKVLPGSRF---NSLLLNRYKGGNDYVGWHADD 148 (183)
Q Consensus 100 ~~~~~wp~~P~ll~l~~~~~e~~~g~~f---n~~LvN~Y~~G~d~ig~HsD~ 148 (183)
.. .|.+..+..++ ...++... ...-|-.|..| ..-..|-|-
T Consensus 108 -----~~-dpvv~~I~~Ri-a~~t~lp~~~~E~lQVlrY~~G-q~Y~~H~D~ 151 (310)
T PLN00052 108 -----RQ-DPVVSRIEERI-AAWTFLPEENAENIQILRYEHG-QKYEPHFDY 151 (310)
T ss_pred -----CC-CHHHHHHHHHH-HHHhCCCcccCcceEEEecCCC-CCCCCCCCc
Confidence 00 14666654444 44555442 23456678887 477888884
No 12
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=75.46 E-value=35 Score=26.33 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=19.4
Q ss_pred cEEEeCCCCCHHHHHHHHHHHhh
Q 030096 38 EVIYFPRIIKMEDSWKFFDYLNN 60 (183)
Q Consensus 38 ~~~~~~~fl~~~~a~~L~~~L~~ 60 (183)
.+.++++||++++++.|.+....
T Consensus 2 ~i~~~~~~ls~~ec~~li~~~~~ 24 (178)
T smart00702 2 GVVVFHDFLSPAECQKLLEEAEP 24 (178)
T ss_pred cEEEECCCCCHHHHHHHHHHhhh
Confidence 47889999999999999877754
No 13
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=68.13 E-value=4.4 Score=28.22 Aligned_cols=40 Identities=28% Similarity=0.378 Sum_probs=25.0
Q ss_pred cEEEEceeC---CCCCCccccccCCCCcCCCCcEEEEEcC-CceeeEEeeC
Q 030096 128 NSLLLNRYK---GGNDYVGWHADDEKLYGSTPEIASVSFG-CERDFLLKIK 174 (183)
Q Consensus 128 n~~LvN~Y~---~G~d~ig~HsD~e~~lg~~~~IasvSLG-a~R~F~~r~k 174 (183)
+.+.+|+|. . ..+++.|.|.+ ..+++|.+. ...-+.|...
T Consensus 2 ~~~~~~~Y~~~~~-~~~~~~H~D~~------~~~~Til~~~~~~gL~~~~~ 45 (98)
T PF03171_consen 2 SQLRLNRYPPPEN-GVGIGPHTDDE------DGLLTILFQDEVGGLQVRDD 45 (98)
T ss_dssp -EEEEEEE-SCCG-CEEEEEEEES--------SSEEEEEETSTS-EEEEET
T ss_pred CEEEEEECCCccc-CCceeCCCcCC------CCeEEEEecccchheecccc
Confidence 678999999 6 57999999996 124445443 5556666654
No 14
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]
Probab=47.48 E-value=8.9 Score=34.20 Aligned_cols=48 Identities=23% Similarity=0.279 Sum_probs=39.1
Q ss_pred CCcEEEEceeCCCCCCccccccCCCC---cCCCCcEEEEEcCCceeeEEeeCC
Q 030096 126 RFNSLLLNRYKGGNDYVGWHADDEKL---YGSTPEIASVSFGCERDFLLKIKP 175 (183)
Q Consensus 126 ~fn~~LvN~Y~~G~d~ig~HsD~e~~---lg~~~~IasvSLGa~R~F~~r~k~ 175 (183)
-++.|.+|.|.. ..++|.|+|.... .-.+-+|.+||.|. ..|-...+.
T Consensus 313 lp~i~~~~f~~~-~g~~~~~Q~~~ey~ks~r~nl~Irqv~~~d-~~f~~~~~~ 363 (378)
T KOG2731|consen 313 LPDICIVNFYSE-TGSLGLHQDKAEYLKSSRVNLPIRQVSIGD-AEFLYGDQR 363 (378)
T ss_pred CcccccccccCC-CcccccchhHHHHHHhhhcCceeEEeccCc-cccccCchh
Confidence 479999999999 6799999996443 45577899999999 799876544
No 15
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=40.24 E-value=60 Score=27.76 Aligned_cols=24 Identities=13% Similarity=-0.014 Sum_probs=19.9
Q ss_pred cEEEeCCCCCHHHHHHHHHHHhhc
Q 030096 38 EVIYFPRIIKMEDSWKFFDYLNNR 61 (183)
Q Consensus 38 ~~~~~~~fl~~~~a~~L~~~L~~~ 61 (183)
+...++++|++++.+.|.+.+...
T Consensus 15 Gyv~~~~~~s~eei~~L~~~~~~~ 38 (288)
T TIGR01762 15 GFIGPFTLYSPEEMKETWKRIRLR 38 (288)
T ss_pred CEEeCcCCCCHHHHHHHHHHHHHH
Confidence 488899999999999988877543
No 16
>PF12088 DUF3565: Protein of unknown function (DUF3565); InterPro: IPR021948 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 30 to 78 amino acids in length. This protein has two conserved sequence motifs: WVA and CGH.
Probab=32.47 E-value=32 Score=22.86 Aligned_cols=27 Identities=33% Similarity=0.612 Sum_probs=19.8
Q ss_pred ccccccCCCCcCCCCcEEEEEcCCceeeEEeeCC
Q 030096 142 VGWHADDEKLYGSTPEIASVSFGCERDFLLKIKP 175 (183)
Q Consensus 142 ig~HsD~e~~lg~~~~IasvSLGa~R~F~~r~k~ 175 (183)
||||.|+|.. =||-|+=|-+.- +||.+
T Consensus 1 vg~h~Dee~h-----WVA~L~CGH~QH--vRH~P 27 (61)
T PF12088_consen 1 VGFHQDEEGH-----WVAELSCGHTQH--VRHDP 27 (61)
T ss_pred CCccccccCC-----EEEEeccccccc--ccCCC
Confidence 7999999864 489999887643 45544
No 17
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=28.89 E-value=57 Score=22.98 Aligned_cols=61 Identities=8% Similarity=-0.009 Sum_probs=41.3
Q ss_pred CchHHHHHHHHHhhcCCCCCcEEEEceeCCCCCCccccccCCCCcCCCCcEEEEEcCCceeeEE
Q 030096 108 FPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLL 171 (183)
Q Consensus 108 ~P~ll~l~~~~~e~~~g~~fn~~LvN~Y~~G~d~ig~HsD~e~~lg~~~~IasvSLGa~R~F~~ 171 (183)
.|.+..+..++ +.+...+.+++++.|-++++|-|..-+|++.. +--.++.-++|..+.|-+
T Consensus 19 ~pt~~~L~~kl-~~Lf~lp~~~~~vtYiDeD~D~ITlssd~eL~--d~~~~~~~~~~~v~k~~~ 79 (82)
T cd06397 19 IPTWEALASKL-ENLYNLPEIKVGVTYIDNDNDEITLSSNKELQ--DFYRLSHRESTEVIKLNV 79 (82)
T ss_pred CccHHHHHHHH-HHHhCCChhHeEEEEEcCCCCEEEecchHHHH--HHHHhcccccCceeEeec
Confidence 36777765555 55677777789999999988999999987643 111244445666666654
No 18
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=26.89 E-value=1.1e+02 Score=25.82 Aligned_cols=24 Identities=0% Similarity=0.106 Sum_probs=20.2
Q ss_pred cEEEeCCCCCHHHHHHHHHHHhhc
Q 030096 38 EVIYFPRIIKMEDSWKFFDYLNNR 61 (183)
Q Consensus 38 ~~~~~~~fl~~~~a~~L~~~L~~~ 61 (183)
+...++++|++++.+.|.+.+..-
T Consensus 29 Gyvvl~~vls~eev~~lr~~i~~~ 52 (277)
T TIGR02408 29 GFLLLENLFSDDEVAALLAEVERM 52 (277)
T ss_pred CEEECcccCCHHHHHHHHHHHHHH
Confidence 488899999999988888887653
No 19
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=26.52 E-value=26 Score=24.26 Aligned_cols=19 Identities=42% Similarity=0.816 Sum_probs=15.5
Q ss_pred EEEceeCCCCCCccccccCC
Q 030096 130 LLLNRYKGGNDYVGWHADDE 149 (183)
Q Consensus 130 ~LvN~Y~~G~d~ig~HsD~e 149 (183)
|-++.|..| +.++||.|..
T Consensus 1 ~~~~~y~~G-~~~~~H~D~~ 19 (100)
T PF13640_consen 1 MQLNRYPPG-GFFGPHTDNS 19 (100)
T ss_dssp -EEEEEETT-EEEEEEESSS
T ss_pred CEEEEECcC-CEEeeeECCC
Confidence 457899996 6999999994
No 20
>KOG1759 consensus Macrophage migration inhibitory factor [Defense mechanisms]
Probab=25.31 E-value=99 Score=23.19 Aligned_cols=35 Identities=11% Similarity=0.226 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEceeCCCCCCcccc
Q 030096 111 LKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWH 145 (183)
Q Consensus 111 ll~l~~~~~e~~~g~~fn~~LvN~Y~~G~d~ig~H 145 (183)
+...+.+++++.++...|.+++++|.-+...+||-
T Consensus 76 ~sa~l~~il~~~L~l~~~rv~I~f~dl~~~~ig~n 110 (115)
T KOG1759|consen 76 YSAALTEILEKELSLDPDRVYIKFYDLNAAFIGFN 110 (115)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEEecCChhHcccc
Confidence 33444556666788999999999999988888774
No 21
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=25.03 E-value=74 Score=26.77 Aligned_cols=41 Identities=10% Similarity=0.218 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHhhc---------CCCCCceeeecCCcccccceeeEec
Q 030096 46 IKMEDSWKFFDYLNNR---------IPWNRPTIRVFGRSCLQPRDTCYVA 86 (183)
Q Consensus 46 l~~~~a~~L~~~L~~~---------~~w~~~~~~~~Gk~~~~pR~~~wy~ 86 (183)
++.++++.||+.|.+. ..|+...+-++++.+...|-+.+|.
T Consensus 211 l~~~es~~ll~~L~~~~~~p~~~~~~~w~~GD~viwDNr~~~H~a~~~~~ 260 (277)
T PRK09553 211 LSEKESEALLGFLFAHITKPEFQVRWRWQPNDVAIWDNRVTQHYANADYL 260 (277)
T ss_pred CCHHHHHHHHHHHHHHhcCcCeEEEEecCCCCEEEEcCcceeEecccCCC
Confidence 6778899999998763 3688888888998888877776664
No 22
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily
Probab=24.90 E-value=88 Score=20.60 Aligned_cols=22 Identities=36% Similarity=0.916 Sum_probs=16.6
Q ss_pred EEEceeCCCCCCccccccCCCCc
Q 030096 130 LLLNRYKGGNDYVGWHADDEKLY 152 (183)
Q Consensus 130 ~LvN~Y~~G~d~ig~HsD~e~~l 152 (183)
+-+..|..| +..+||.|.....
T Consensus 13 ~~~~~~~~g-~~~~~H~D~~~~~ 34 (70)
T PF13661_consen 13 FRFYRYRRG-DFFGWHVDADPSS 34 (70)
T ss_pred eeEEEcCCC-CEeeeeEcCCccc
Confidence 445568885 7999999987653
No 23
>KOG4417 consensus Predicted endonuclease [General function prediction only]
Probab=22.63 E-value=86 Score=26.29 Aligned_cols=46 Identities=26% Similarity=0.449 Sum_probs=34.3
Q ss_pred cEEEeCCCCCHHHHHHHHHHHhhcC----CCCCceeeecCCcccccceee
Q 030096 38 EVIYFPRIIKMEDSWKFFDYLNNRI----PWNRPTIRVFGRSCLQPRDTC 83 (183)
Q Consensus 38 ~~~~~~~fl~~~~a~~L~~~L~~~~----~w~~~~~~~~Gk~~~~pR~~~ 83 (183)
.+-|+|+||+--||..+++.|..-. +|+.+-+-+-|.-+.-||--+
T Consensus 84 e~pYvPgfLafREa~v~l~~L~~v~~erh~fr~dvilvDGnG~lHprGfG 133 (261)
T KOG4417|consen 84 ELPYVPGFLAFREAEVMLDFLKSVITERHEFRPDVILVDGNGELHPRGFG 133 (261)
T ss_pred ccCcCccceeeehhHHHHHHHHhcccccCCccccEEEEcCCceEcccccc
Confidence 4679999999999998888886643 466655666677777777543
No 24
>PF09793 AD: Anticodon-binding domain; InterPro: IPR019181 Sm and Sm-like proteins of the Lsm (like Sm) domain family are generally involved in essential RNA-processing tasks []. All the LSM proteins are evolutionarily conserved in eukaryotes with an N-terminal Lsm domain to bind nucleic acids, followed by an as yet uncharacterised C-terminal region, some of which have a C-terminal methyltransferase domain. This entry represents the central region of approximately 100 residues, which is conserved from plants to humans and is frequently found in association with Lsm domain-containing proteins.
Probab=22.15 E-value=1.1e+02 Score=21.43 Aligned_cols=26 Identities=31% Similarity=0.590 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhhcC---CCCCceeeecCC
Q 030096 49 EDSWKFFDYLNNRI---PWNRPTIRVFGR 74 (183)
Q Consensus 49 ~~a~~L~~~L~~~~---~w~~~~~~~~Gk 74 (183)
.++..||+.|...+ .|....|.+++.
T Consensus 34 ~egQ~lF~~l~Kt~~dv~W~g~~IiV~d~ 62 (91)
T PF09793_consen 34 PEGQKLFDALSKTIPDVRWDGKNIIVLDE 62 (91)
T ss_pred HHHHHHHHHHHhhCCCCEECCCeEEEeCc
Confidence 46889999998754 599988888875
Done!