Query 030102
Match_columns 183
No_of_seqs 114 out of 605
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 08:33:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030102.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030102hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 3.2E-41 6.9E-46 272.1 25.9 162 18-180 52-219 (219)
2 PF03168 LEA_2: Late embryogen 99.6 1.6E-14 3.5E-19 101.9 10.6 97 59-159 1-100 (101)
3 smart00769 WHy Water Stress an 99.0 7.1E-09 1.5E-13 73.8 11.8 83 51-137 12-96 (100)
4 PF07092 DUF1356: Protein of u 98.6 3.2E-05 6.8E-10 63.0 20.2 101 7-109 77-180 (238)
5 COG5608 LEA14-like dessication 98.0 0.0027 5.8E-08 48.4 17.3 114 24-147 26-140 (161)
6 PF14155 DUF4307: Domain of un 95.0 0.68 1.5E-05 33.5 10.6 96 4-111 2-101 (112)
7 PF12751 Vac7: Vacuolar segreg 93.7 0.15 3.3E-06 44.4 5.6 38 51-88 345-382 (387)
8 PF11797 DUF3324: Protein of u 79.4 23 0.0005 26.3 11.7 102 31-154 26-129 (140)
9 TIGR02588 conserved hypothetic 76.3 23 0.00049 26.2 7.5 52 9-66 5-61 (122)
10 PF09865 DUF2092: Predicted pe 68.2 33 0.00072 27.6 7.5 37 51-87 36-74 (214)
11 PRK10893 lipopolysaccharide ex 67.3 60 0.0013 25.6 10.2 30 28-58 36-65 (192)
12 PF11906 DUF3426: Protein of u 64.9 53 0.0012 24.2 7.7 57 35-91 48-106 (149)
13 PRK05529 cell division protein 64.2 6 0.00013 32.7 2.5 37 9-47 37-73 (255)
14 PF12273 RCR: Chitin synthesis 61.0 4.2 9E-05 30.0 1.0 19 6-24 1-19 (130)
15 PRK12785 fliL flagellar basal 59.8 60 0.0013 24.9 7.3 14 71-84 87-100 (166)
16 PF06919 Phage_T4_Gp30_7: Phag 54.6 31 0.00067 24.8 4.4 38 64-101 40-78 (121)
17 PF12505 DUF3712: Protein of u 51.7 40 0.00086 24.4 4.9 27 52-78 98-124 (125)
18 COG2332 CcmE Cytochrome c-type 50.9 50 0.0011 25.3 5.3 28 64-91 80-109 (153)
19 PF00927 Transglut_C: Transglu 48.3 90 0.0019 21.6 6.7 56 51-106 12-72 (107)
20 PF13598 DUF4139: Domain of un 45.5 1.3E+02 0.0029 25.0 7.8 50 50-103 162-211 (317)
21 PF14874 PapD-like: Flagellar- 43.1 1E+02 0.0023 20.9 9.6 55 52-109 18-72 (102)
22 COG1580 FliL Flagellar basal b 40.6 80 0.0017 24.3 5.2 16 2-17 12-27 (159)
23 COG4194 Predicted membrane pro 39.6 29 0.00063 30.0 2.8 40 4-44 120-159 (350)
24 KOG3950 Gamma/delta sarcoglyca 39.0 7.3 0.00016 32.2 -0.8 68 2-69 31-124 (292)
25 PRK11556 multidrug efflux syst 38.1 91 0.002 27.4 5.9 25 1-25 1-25 (415)
26 PRK11578 macrolide transporter 37.8 1.6E+02 0.0034 25.2 7.2 42 5-46 6-47 (370)
27 PF09624 DUF2393: Protein of u 37.3 36 0.00077 25.4 2.8 44 52-95 60-103 (149)
28 PF06097 DUF945: Bacterial pro 37.0 2.3E+02 0.0051 24.7 8.3 30 32-66 43-72 (460)
29 PRK13150 cytochrome c-type bio 34.0 56 0.0012 25.2 3.4 31 61-91 83-115 (159)
30 PRK13254 cytochrome c-type bio 33.8 68 0.0015 24.4 3.8 11 73-83 80-90 (148)
31 PF09677 TrbI_Ftype: Type-F co 33.2 13 0.00029 26.8 -0.2 33 4-36 1-34 (111)
32 PF12202 OSR1_C: Oxidative-str 32.2 51 0.0011 19.2 2.2 27 56-82 1-28 (38)
33 PF03100 CcmE: CcmE; InterPro 31.5 16 0.00034 27.0 0.0 24 3-26 4-27 (131)
34 PRK10807 paraquat-inducible pr 31.0 23 0.0005 32.6 1.0 41 7-48 19-59 (547)
35 PF09911 DUF2140: Uncharacteri 30.7 40 0.00086 26.5 2.2 16 18-33 16-31 (187)
36 PRK10476 multidrug resistance 30.4 35 0.00076 29.0 2.0 32 2-33 5-37 (346)
37 PF04790 Sarcoglycan_1: Sarcog 30.0 16 0.00034 30.5 -0.2 19 2-20 8-26 (264)
38 PRK13159 cytochrome c-type bio 29.9 1.2E+02 0.0027 23.2 4.7 25 67-91 84-109 (155)
39 PRK05696 fliL flagellar basal 29.8 34 0.00074 26.3 1.6 25 58-84 76-100 (170)
40 PF11606 AlcCBM31: Family 31 c 28.6 38 0.00083 23.4 1.5 22 63-84 4-27 (93)
41 COG3121 FimC P pilus assembly 28.4 1.2E+02 0.0026 24.7 4.6 42 59-105 166-207 (235)
42 PF11322 DUF3124: Protein of u 28.3 2.5E+02 0.0054 20.8 7.0 52 51-105 20-74 (125)
43 TIGR02231 conserved hypothetic 27.6 1.9E+02 0.0042 26.2 6.4 48 50-101 361-408 (525)
44 COG3008 PqiB Paraquat-inducibl 27.3 35 0.00077 31.4 1.5 42 3-45 16-59 (553)
45 COG4698 Uncharacterized protei 27.2 28 0.0006 27.5 0.7 38 5-42 9-48 (197)
46 PRK07718 fliL flagellar basal 27.1 34 0.00074 25.6 1.2 13 72-84 64-76 (142)
47 PRK13717 conjugal transfer pro 27.0 26 0.00056 26.0 0.5 37 4-40 15-52 (128)
48 PF10830 DUF2553: Protein of u 26.4 1.2E+02 0.0026 20.4 3.6 29 65-93 7-35 (76)
49 PF10614 CsgF: Type VIII secre 26.0 26 0.00057 26.5 0.4 11 25-35 23-33 (142)
50 PF07680 DoxA: TQO small subun 24.9 1.7E+02 0.0038 21.8 4.6 43 26-68 10-60 (133)
51 PF11044 TMEMspv1-c74-12: Plec 22.6 35 0.00077 20.6 0.4 18 8-25 3-20 (49)
52 PRK14758 hypothetical protein; 22.1 33 0.00072 18.2 0.2 16 5-20 7-22 (27)
53 COG3117 Uncharacterized protei 21.3 59 0.0013 25.8 1.5 21 27-47 34-54 (188)
54 cd01324 cbb3_Oxidase_CcoQ Cyto 20.7 23 0.00051 21.6 -0.7 15 18-32 21-35 (48)
55 PF10814 DUF2562: Protein of u 20.6 77 0.0017 23.5 1.9 26 8-33 91-118 (133)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=3.2e-41 Score=272.14 Aligned_cols=162 Identities=20% Similarity=0.352 Sum_probs=149.2
Q ss_pred HHHHheeEEEEecCCCeEEEEEEEEeeEEecC-----CcEeEEEEEEEEEeCCCeeeEEEcCeEEEEEECCEEEEeEEeC
Q 030102 18 AATATAALVTAKPKDPTFQLISIKLTSFKLKF-----PVLDAEVILTVHVVNPNITPIKYSSTTMSIFYEGSLLGSAPVK 92 (183)
Q Consensus 18 ~~~~~l~~~v~rP~~P~~~v~~~~l~~f~~~~-----~~l~~~l~~~v~v~NPN~~~i~Y~~~~~~v~Y~g~~vg~~~ip 92 (183)
+++++++|++||||+|+|+++++++++|++++ +.+|++++++++++|||+++|+|++++++++|+|+.+|++.+|
T Consensus 52 ~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~~~~~Y~~~~~~v~Y~g~~vG~a~~p 131 (219)
T PLN03160 52 TTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNVASFKYSNTTTTIYYGGTVVGEARTP 131 (219)
T ss_pred HHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCceeEEEcCeEEEEEECCEEEEEEEcC
Confidence 34456788899999999999999999999864 3689999999999999999999999999999999999999999
Q ss_pred CeEecCCCeEEEEEEEEEeccccccchhhhhhccccCeEEEEEEEEEEEEEEEEE-EeeeeEEEEEEEEEEeCCcceEEe
Q 030102 93 AGSQAAGSCQLLHIPARLDGLELAHHARKFFADVAKREMLFEAKVDIEGTAKVLW-WDHKFKIHVDSHVTVDPVFLDVID 171 (183)
Q Consensus 93 ~f~q~~~~t~~v~~~~~~~~~~l~~~~~~l~~d~~~g~v~l~~~~~v~~rv~~~~-~~~~~~~~v~C~~~v~~~~~~i~~ 171 (183)
+|+|++++|+.+++++.+.+.++.+ .++|.+|+++|.+||+++++++|||++++ ++++++++++|+++++..+..+++
T Consensus 132 ~g~~~ar~T~~l~~tv~~~~~~~~~-~~~L~~D~~~G~v~l~~~~~v~gkVkv~~i~k~~v~~~v~C~v~V~~~~~~i~~ 210 (219)
T PLN03160 132 PGKAKARRTMRMNVTVDIIPDKILS-VPGLLTDISSGLLNMNSYTRIGGKVKILKIIKKHVVVKMNCTMTVNITSQAIQG 210 (219)
T ss_pred CcccCCCCeEEEEEEEEEEeceecc-chhHHHHhhCCeEEEEEEEEEEEEEEEEEEEEEEEEEEEEeEEEEECCCCEEec
Confidence 9999999999999999888887766 37899999999999999999999999998 578899999999999999999999
Q ss_pred cccccceee
Q 030102 172 QENKSELEV 180 (183)
Q Consensus 172 ~~C~~~~~~ 180 (183)
++|+.++++
T Consensus 211 ~~C~~~~~~ 219 (219)
T PLN03160 211 QKCKRHVDL 219 (219)
T ss_pred cEecccccC
Confidence 999998764
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.59 E-value=1.6e-14 Score=101.88 Aligned_cols=97 Identities=26% Similarity=0.365 Sum_probs=74.6
Q ss_pred EEEEeCCCeeeEEEcCeEEEEEECCEEEE-eEEeCCeEecCCCeEEEEEEEEEeccccccchhhhhhccccCeEEEEEEE
Q 030102 59 TVHVVNPNITPIKYSSTTMSIFYEGSLLG-SAPVKAGSQAAGSCQLLHIPARLDGLELAHHARKFFADVAKREMLFEAKV 137 (183)
Q Consensus 59 ~v~v~NPN~~~i~Y~~~~~~v~Y~g~~vg-~~~ip~f~q~~~~t~~v~~~~~~~~~~l~~~~~~l~~d~~~g~v~l~~~~ 137 (183)
+++++|||.++++|++.+++++|+|+.+| ....|+|+||+++++.+.+.+.+....+ ...+..+. +|..++++..
T Consensus 1 ~l~v~NPN~~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l---~~~l~~~~-~~~~~~~v~~ 76 (101)
T PF03168_consen 1 TLSVRNPNSFGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDL---PRLLKDLL-AGRVPFDVTY 76 (101)
T ss_dssp EEEEEESSSS-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHH---HHHHHHHH-HTTSCEEEEE
T ss_pred CEEEECCCceeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHH---HHHHHhhh-ccccceEEEE
Confidence 57999999999999999999999999999 7778999999999999988888776654 23455555 6677788888
Q ss_pred EEEEEEEEE-E-EeeeeEEEEEEE
Q 030102 138 DIEGTAKVL-W-WDHKFKIHVDSH 159 (183)
Q Consensus 138 ~v~~rv~~~-~-~~~~~~~~v~C~ 159 (183)
+++|++++. . +..++++.++|+
T Consensus 77 ~~~g~~~v~~~~~~~~~~v~~~~~ 100 (101)
T PF03168_consen 77 RIRGTFKVLGTPIFGSVRVPVSCE 100 (101)
T ss_dssp EEEEEEE-EE-TTTSCEEEEEEEE
T ss_pred EEEEEEEEcccceeeeEEEeEEeE
Confidence 899999963 2 334455666654
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=99.03 E-value=7.1e-09 Score=73.80 Aligned_cols=83 Identities=27% Similarity=0.467 Sum_probs=67.6
Q ss_pred cEeEEEEEEEEEeCCCeeeEEEcCeEEEEEECCEEEEeEEeC-CeEecCCCeEEEEEEEEEeccccccchhhhhhccccC
Q 030102 51 VLDAEVILTVHVVNPNITPIKYSSTTMSIFYEGSLLGSAPVK-AGSQAAGSCQLLHIPARLDGLELAHHARKFFADVAKR 129 (183)
Q Consensus 51 ~l~~~l~~~v~v~NPN~~~i~Y~~~~~~v~Y~g~~vg~~~ip-~f~q~~~~t~~v~~~~~~~~~~l~~~~~~l~~d~~~g 129 (183)
.++.++.+.+++.|||.+++.|++.+.+++|+|.++|++..+ ++.+|+++++.+.+++.+. ... ...+..++.+|
T Consensus 12 ~~~~~~~l~l~v~NPN~~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~-~~~---~~~~~~~l~~~ 87 (100)
T smart00769 12 GLEIEIVLKVKVQNPNPFPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTVN-LFL---AEALIWHIANG 87 (100)
T ss_pred ceEEEEEEEEEEECCCCCccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEee-hhH---hHHHHHhhccC
Confidence 688999999999999999999999999999999999999996 7999999999999888883 221 34566666555
Q ss_pred e-EEEEEEE
Q 030102 130 E-MLFEAKV 137 (183)
Q Consensus 130 ~-v~l~~~~ 137 (183)
. +++++++
T Consensus 88 ~~~~y~l~g 96 (100)
T smart00769 88 EEIPYRLDG 96 (100)
T ss_pred CCccEEEEE
Confidence 3 4544333
No 4
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=98.58 E-value=3.2e-05 Score=63.00 Aligned_cols=101 Identities=13% Similarity=0.281 Sum_probs=75.2
Q ss_pred eeehHHHHHHHHHHHheeEEEEecCCCeEEEEEEEEeeEEecC--CcEeEEEEEEEEEeCCCeeeEEEcCeEEEEEECCE
Q 030102 7 WSWNSALIGAVAATATAALVTAKPKDPTFQLISIKLTSFKLKF--PVLDAEVILTVHVVNPNITPIKYSSTTMSIFYEGS 84 (183)
Q Consensus 7 ~~~~~~li~~~~~~~~l~~~v~rP~~P~~~v~~~~l~~f~~~~--~~l~~~l~~~v~v~NPN~~~i~Y~~~~~~v~Y~g~ 84 (183)
|.+++.++|+++.. |+...+-||.-.++-.++......++. ..+..+++-.++++|||+.++.-.+.++++.|...
T Consensus 77 yV~~sV~~CLl~~~--L~iFFLfPRsV~v~~~gv~s~~V~f~~~~~~v~l~itn~lNIsN~NFy~V~Vt~~s~qv~~~~~ 154 (238)
T PF07092_consen 77 YVFLSVLLCLLLSG--LVIFFLFPRSVTVSPVGVKSVTVSFNPDKSTVQLNITNTLNISNPNFYPVTVTNLSIQVLYMKT 154 (238)
T ss_pred EeeHHHHHHHHHHH--heEEEEeCcEEEEecCcEEEEEEEEeCCCCEEEEEEEEEEEccCCCEEEEEEEeEEEEEEEEEe
Confidence 45566677876543 444556688766665555544444554 46899999999999999999999999999999999
Q ss_pred EEEeEEeCC-eEecCCCeEEEEEEEE
Q 030102 85 LLGSAPVKA-GSQAAGSCQLLHIPAR 109 (183)
Q Consensus 85 ~vg~~~ip~-f~q~~~~t~~v~~~~~ 109 (183)
.+|.+.... ...++++.+.+..++.
T Consensus 155 VVG~~~~~~~~~I~Prs~~q~~~tV~ 180 (238)
T PF07092_consen 155 VVGKGKNSNITVIGPRSSKQVNYTVK 180 (238)
T ss_pred EEeeeEecceEEecccCCceEEEEee
Confidence 999998864 4678887776665443
No 5
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=97.96 E-value=0.0027 Score=48.37 Aligned_cols=114 Identities=20% Similarity=0.356 Sum_probs=83.3
Q ss_pred eEEEEecCCCeEEEEEEEEeeEEecCCcEeEEEEEEEEEeCCCeeeEEEcCeEEEEEECCEEEEeEEe-CCeEecCCCeE
Q 030102 24 ALVTAKPKDPTFQLISIKLTSFKLKFPVLDAEVILTVHVVNPNITPIKYSSTTMSIFYEGSLLGSAPV-KAGSQAAGSCQ 102 (183)
Q Consensus 24 ~~~v~rP~~P~~~v~~~~l~~f~~~~~~l~~~l~~~v~v~NPN~~~i~Y~~~~~~v~Y~g~~vg~~~i-p~f~q~~~~t~ 102 (183)
+...++ .|.++--.+..-... .....+..++.+.|||.+++--.+.+.+++-+|.++|++.. .++..++.+..
T Consensus 26 ~~i~~~--~p~ve~~ka~wGkvt----~s~~EiV~t~KiyNPN~fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~ 99 (161)
T COG5608 26 CMIPVK--KPGVESMKAKWGKVT----NSETEIVGTLKIYNPNPFPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRE 99 (161)
T ss_pred CceEcC--CCCceEEEEEEEEEe----ccceEEEEEEEecCCCCcceeeeceEEEEEEcceEeeccccccceEECCCCeE
Confidence 444443 777666666655544 34467888999999999999999999999999999999998 46889999999
Q ss_pred EEEEEEEEeccccccchhhhhhccccCeEEEEEEEEEEEEEEEEE
Q 030102 103 LLHIPARLDGLELAHHARKFFADVAKREMLFEAKVDIEGTAKVLW 147 (183)
Q Consensus 103 ~v~~~~~~~~~~l~~~~~~l~~d~~~g~v~l~~~~~v~~rv~~~~ 147 (183)
++++++.+...++.. .+...+.+|+=. .++.++.+.+++.+
T Consensus 100 tvdv~l~~d~~~~ke---~w~~hi~ngErs-~Ir~~i~~~v~vg~ 140 (161)
T COG5608 100 TVDVPLRLDNSKIKE---WWVTHIENGERS-TIRVRIKGVVKVGG 140 (161)
T ss_pred EEEEEEEEehHHHHH---HHHHHhhccCcc-cEEEEEEEEEEEcc
Confidence 999988888766543 344455566521 24456666666665
No 6
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=94.97 E-value=0.68 Score=33.55 Aligned_cols=96 Identities=17% Similarity=0.152 Sum_probs=47.0
Q ss_pred ceeeeehHHHHHHHHHHHheeEEEEe-cCCCeEEEEEEEEeeEEecCCcEeEEEEEEEEEeCCC-eeeEEEcCeEEEEEE
Q 030102 4 KVKWSWNSALIGAVAATATAALVTAK-PKDPTFQLISIKLTSFKLKFPVLDAEVILTVHVVNPN-ITPIKYSSTTMSIFY 81 (183)
Q Consensus 4 ~~~~~~~~~li~~~~~~~~l~~~v~r-P~~P~~~v~~~~l~~f~~~~~~l~~~l~~~v~v~NPN-~~~i~Y~~~~~~v~Y 81 (183)
++||.|.++++.++++++.++|+.+. ...|.+ +.+..+|+..+. -+.++++.++-. |. ..-= .--..-|
T Consensus 2 ~rr~~~~~~~v~~vv~~~~~~w~~~~~~~~~~v---~~~~~gf~vv~d-~~v~v~f~Vtr~-~~~~a~C----~VrA~~~ 72 (112)
T PF14155_consen 2 RRRKLVIAGAVLVVVAGAVVAWFGYSQFGSPPV---SAEVIGFEVVDD-STVEVTFDVTRD-PGRPAVC----IVRALDY 72 (112)
T ss_pred CcceeEehHHHHHHHHHHHHhHhhhhhccCCCc---eEEEEEEEECCC-CEEEEEEEEEEC-CCCCEEE----EEEEEeC
Confidence 45666666666666566666666555 556665 344445555442 123333334433 55 2210 1112457
Q ss_pred CCEEEEeEE--eCCeEecCCCeEEEEEEEEEe
Q 030102 82 EGSLLGSAP--VKAGSQAAGSCQLLHIPARLD 111 (183)
Q Consensus 82 ~g~~vg~~~--ip~f~q~~~~t~~v~~~~~~~ 111 (183)
++..+|.-. +|| +..++..+.+++...
T Consensus 73 d~aeVGrreV~vp~---~~~~~~~~~v~v~Tt 101 (112)
T PF14155_consen 73 DGAEVGRREVLVPP---SGERTVRVTVTVRTT 101 (112)
T ss_pred CCCEEEEEEEEECC---CCCcEEEEEEEEEec
Confidence 777788544 454 333444444444333
No 7
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=93.73 E-value=0.15 Score=44.44 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=30.5
Q ss_pred cEeEEEEEEEEEeCCCeeeEEEcCeEEEEEECCEEEEe
Q 030102 51 VLDAEVILTVHVVNPNITPIKYSSTTMSIFYEGSLLGS 88 (183)
Q Consensus 51 ~l~~~l~~~v~v~NPN~~~i~Y~~~~~~v~Y~g~~vg~ 88 (183)
.--.=|++.|.+.|||.+.+.-++.++++|=+-.-+|.
T Consensus 345 ~qELmfdl~V~A~NPn~~~V~I~d~dldIFAKS~yvg~ 382 (387)
T PF12751_consen 345 EQELMFDLTVEAFNPNWFTVTIDDMDLDIFAKSRYVGT 382 (387)
T ss_pred cceEEEeeEEEEECCCeEEEEeccceeeeEecCCccCc
Confidence 34455778899999999999999999999877655553
No 8
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=79.42 E-value=23 Score=26.33 Aligned_cols=102 Identities=17% Similarity=0.216 Sum_probs=61.7
Q ss_pred CCCeEEEEEEEEeeEEecCCcEeEEEEEEEEEeCCCeeeEEEcCeEEEEEECCE--EEEeEEeCCeEecCCCeEEEEEEE
Q 030102 31 KDPTFQLISIKLTSFKLKFPVLDAEVILTVHVVNPNITPIKYSSTTMSIFYEGS--LLGSAPVKAGSQAAGSCQLLHIPA 108 (183)
Q Consensus 31 ~~P~~~v~~~~l~~f~~~~~~l~~~l~~~v~v~NPN~~~i~Y~~~~~~v~Y~g~--~vg~~~ip~f~q~~~~t~~v~~~~ 108 (183)
-.|.+.+.++.+.. .|..-.+.+.++||...-+.==.+++.++..|. .+.......+...+.+.-.+ .+
T Consensus 26 ~~p~L~l~~v~~~~-------~n~~~~i~~~l~N~~~~~l~~~~v~a~V~~~~~~k~~~~~~~~~~~mAPNS~f~~--~i 96 (140)
T PF11797_consen 26 VPPKLKLGKVKPGQ-------INGRNVIQANLQNPQPAILKKLTVDAKVTKKGSKKVLYTFKKENMQMAPNSNFNF--PI 96 (140)
T ss_pred cCcccEEeeeeeeE-------ECCeeEEEEEEECCCchhhcCcEEEEEEEECCCCeEEEEeeccCCEECCCCeEEe--Ee
Confidence 45777777777664 445667778999999544444456777778774 56677777777777777333 32
Q ss_pred EEeccccccchhhhhhccccCeEEEEEEEEEEEEEEEEEEeeeeEE
Q 030102 109 RLDGLELAHHARKFFADVAKREMLFEAKVDIEGTAKVLWWDHKFKI 154 (183)
Q Consensus 109 ~~~~~~l~~~~~~l~~d~~~g~v~l~~~~~v~~rv~~~~~~~~~~~ 154 (183)
...+. .+..|...+.+.++-.. +-|.|++.+++
T Consensus 97 ~~~~~-----------~lk~G~Y~l~~~~~~~~--~~W~f~k~F~I 129 (140)
T PF11797_consen 97 PLGGK-----------KLKPGKYTLKITAKSGK--KTWTFTKDFTI 129 (140)
T ss_pred cCCCc-----------CccCCEEEEEEEEEcCC--cEEEEEEEEEE
Confidence 22222 34577776665444322 24555555544
No 9
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=76.28 E-value=23 Score=26.16 Aligned_cols=52 Identities=8% Similarity=0.150 Sum_probs=31.5
Q ss_pred ehHHHHHHHHHH-----HheeEEEEecCCCeEEEEEEEEeeEEecCCcEeEEEEEEEEEeCCC
Q 030102 9 WNSALIGAVAAT-----ATAALVTAKPKDPTFQLISIKLTSFKLKFPVLDAEVILTVHVVNPN 66 (183)
Q Consensus 9 ~~~~li~~~~~~-----~~l~~~v~rP~~P~~~v~~~~l~~f~~~~~~l~~~l~~~v~v~NPN 66 (183)
|.++-|++++++ ++.-++.-++++|.+++......+ .....+.+-++++|--
T Consensus 5 Wvt~~Is~~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r------~~~gqyyVpF~V~N~g 61 (122)
T TIGR02588 5 WVTFGISTLILAAMFGLVAYDWLRYSNKAAVLEVAPAEVER------MQTGQYYVPFAIHNLG 61 (122)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEeehheeE------EeCCEEEEEEEEEeCC
Confidence 555555443322 223345778889999888776654 2334456667888865
No 10
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=68.22 E-value=33 Score=27.64 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=31.7
Q ss_pred cEeEEEEEEEEEeCCCeeeEEE--cCeEEEEEECCEEEE
Q 030102 51 VLDAEVILTVHVVNPNITPIKY--SSTTMSIFYEGSLLG 87 (183)
Q Consensus 51 ~l~~~l~~~v~v~NPN~~~i~Y--~~~~~~v~Y~g~~vg 87 (183)
.+...-+..+.++-|||+.+.+ +..+..++|+|..+.
T Consensus 36 klq~~~~~~v~v~RPdklr~~~~gd~~~~~~~yDGkt~T 74 (214)
T PF09865_consen 36 KLQFSSSGTVTVQRPDKLRIDRRGDGADREFYYDGKTFT 74 (214)
T ss_pred eEEEEEEEEEEEeCCCeEEEEEEcCCcceEEEECCCEEE
Confidence 5777778899999999888888 668899999998775
No 11
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=67.27 E-value=60 Score=25.60 Aligned_cols=30 Identities=17% Similarity=0.265 Sum_probs=20.8
Q ss_pred EecCCCeEEEEEEEEeeEEecCCcEeEEEEE
Q 030102 28 AKPKDPTFQLISIKLTSFKLKFPVLDAEVIL 58 (183)
Q Consensus 28 ~rP~~P~~~v~~~~l~~f~~~~~~l~~~l~~ 58 (183)
-.++.|.|.+.+++...|+-+- .+++.+..
T Consensus 36 ~~~~~Pdy~~~~~~~~~yd~~G-~l~y~l~a 65 (192)
T PRK10893 36 VNNNDPTYQSQHTDTVVYNPEG-ALSYKLVA 65 (192)
T ss_pred CCCCCCCEEEeccEEEEECCCC-CEEEEEEe
Confidence 3577799999999988887642 34444443
No 12
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=64.87 E-value=53 Score=24.25 Aligned_cols=57 Identities=16% Similarity=0.183 Sum_probs=43.5
Q ss_pred EEEEEEEEeeEEecC-CcEeEEEEEEEEEeCCCeeeEEEcCeEEEEE-ECCEEEEeEEe
Q 030102 35 FQLISIKLTSFKLKF-PVLDAEVILTVHVVNPNITPIKYSSTTMSIF-YEGSLLGSAPV 91 (183)
Q Consensus 35 ~~v~~~~l~~f~~~~-~~l~~~l~~~v~v~NPN~~~i~Y~~~~~~v~-Y~g~~vg~~~i 91 (183)
-.++.+++.+..+.. +.-.-.+.++.+++|.......|-..+++++ -+|+.+++-.+
T Consensus 48 ~~~~~l~i~~~~~~~~~~~~~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~ 106 (149)
T PF11906_consen 48 RDIDALKIESSDLRPVPDGPGVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVF 106 (149)
T ss_pred cCcceEEEeeeeEEeecCCCCEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEE
Confidence 456666666555543 3455667788899999999999999999998 78888887776
No 13
>PRK05529 cell division protein FtsQ; Provisional
Probab=64.16 E-value=6 Score=32.67 Aligned_cols=37 Identities=22% Similarity=0.233 Sum_probs=22.3
Q ss_pred ehHHHHHHHHHHHheeEEEEecCCCeEEEEEEEEeeEEe
Q 030102 9 WNSALIGAVAATATAALVTAKPKDPTFQLISIKLTSFKL 47 (183)
Q Consensus 9 ~~~~li~~~~~~~~l~~~v~rP~~P~~~v~~~~l~~f~~ 47 (183)
|++.++++++++++++.++|. .|.|.+.++++++-..
T Consensus 37 ~~~~~~~~~~~l~~l~~~~~~--Sp~~~v~~I~V~Gn~~ 73 (255)
T PRK05529 37 LLACAVGAVLTLLLFVMLSAY--SPLLALRSIEVAGNMR 73 (255)
T ss_pred hHHHHHHHHHHHHHHHHHhee--CCceEEEEEEEECCcc
Confidence 444444433333434434443 7999999999987654
No 14
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=61.01 E-value=4.2 Score=29.96 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=11.2
Q ss_pred eeeehHHHHHHHHHHHhee
Q 030102 6 KWSWNSALIGAVAATATAA 24 (183)
Q Consensus 6 ~~~~~~~li~~~~~~~~l~ 24 (183)
||..++.||.+++++++++
T Consensus 1 RW~l~~iii~~i~l~~~~~ 19 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLF 19 (130)
T ss_pred CeeeHHHHHHHHHHHHHHH
Confidence 5777777666554444443
No 15
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=59.81 E-value=60 Score=24.93 Aligned_cols=14 Identities=7% Similarity=0.145 Sum_probs=8.5
Q ss_pred EEcCeEEEEEECCE
Q 030102 71 KYSSTTMSIFYEGS 84 (183)
Q Consensus 71 ~Y~~~~~~v~Y~g~ 84 (183)
+|=...+.+-+++.
T Consensus 87 ryLkv~i~L~~~~~ 100 (166)
T PRK12785 87 QYLKLKVVLEVKDE 100 (166)
T ss_pred eEEEEEEEEEECCH
Confidence 66556666666654
No 16
>PF06919 Phage_T4_Gp30_7: Phage Gp30.7 protein; InterPro: IPR009690 This family consists of several phage Gp30.7 proteins of 121 residues in length. Family members seem to be exclusively from the T4-like viruses. The function of this family is unknown.
Probab=54.61 E-value=31 Score=24.80 Aligned_cols=38 Identities=18% Similarity=0.310 Sum_probs=29.8
Q ss_pred CCCeeeEEE-cCeEEEEEECCEEEEeEEeCCeEecCCCe
Q 030102 64 NPNITPIKY-SSTTMSIFYEGSLLGSAPVKAGSQAAGSC 101 (183)
Q Consensus 64 NPN~~~i~Y-~~~~~~v~Y~g~~vg~~~ip~f~q~~~~t 101 (183)
|||++-++| ++.++++-|.|..+--+.-..++++--+|
T Consensus 40 ~pNYvf~~FEnG~tvsv~~~gs~~kI~~~Dd~r~RDLgT 78 (121)
T PF06919_consen 40 TPNYVFMRFENGITVSVTYNGSIFKIGLDDDHRERDLGT 78 (121)
T ss_pred CCCEEEEEecCCCEEEEEecCcEEEEEecCchhhcccCC
Confidence 999999999 67999999999876655556666655555
No 17
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=51.70 E-value=40 Score=24.40 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=20.9
Q ss_pred EeEEEEEEEEEeCCCeeeEEEcCeEEE
Q 030102 52 LDAEVILTVHVVNPNITPIKYSSTTMS 78 (183)
Q Consensus 52 l~~~l~~~v~v~NPN~~~i~Y~~~~~~ 78 (183)
=..++..++.+.||..+++..++.+++
T Consensus 98 ~g~~~~~~~~l~NPS~~ti~lG~v~~~ 124 (125)
T PF12505_consen 98 DGINLNATVTLPNPSPLTIDLGNVTLN 124 (125)
T ss_pred CcEEEEEEEEEcCCCeEEEEeccEEEe
Confidence 456677888899999888877777664
No 18
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=50.86 E-value=50 Score=25.26 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=18.7
Q ss_pred CCC-eeeEEEcCeEEEEEECCEEE-EeEEe
Q 030102 64 NPN-ITPIKYSSTTMSIFYEGSLL-GSAPV 91 (183)
Q Consensus 64 NPN-~~~i~Y~~~~~~v~Y~g~~v-g~~~i 91 (183)
--| .+.+.|.+.-=++|=.|+.| +++.+
T Consensus 80 D~~~~v~V~Y~GiLPDLFREGQgVVa~G~~ 109 (153)
T COG2332 80 DGNKSVTVSYEGILPDLFREGQGVVAEGQL 109 (153)
T ss_pred cCCceEEEEEeccCchhhhcCCeEEEEEEe
Confidence 444 67777777777777777653 66666
No 19
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=48.34 E-value=90 Score=21.60 Aligned_cols=56 Identities=13% Similarity=0.224 Sum_probs=35.5
Q ss_pred cEeEEEEEEEEEeCCC--e-eeEEEcCeEEEEEECCEEEE--eEEeCCeEecCCCeEEEEE
Q 030102 51 VLDAEVILTVHVVNPN--I-TPIKYSSTTMSIFYEGSLLG--SAPVKAGSQAAGSCQLLHI 106 (183)
Q Consensus 51 ~l~~~l~~~v~v~NPN--~-~~i~Y~~~~~~v~Y~g~~vg--~~~ip~f~q~~~~t~~v~~ 106 (183)
.+.-++.+.+++.||. . -.+.-.=....++|.|.... .-.......+++++..+..
T Consensus 12 ~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~ 72 (107)
T PF00927_consen 12 VVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEV 72 (107)
T ss_dssp BTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEE
T ss_pred cCCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEE
Confidence 5667888999999997 3 23444446677789998653 2333456677888866543
No 20
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=45.53 E-value=1.3e+02 Score=25.01 Aligned_cols=50 Identities=20% Similarity=0.363 Sum_probs=34.8
Q ss_pred CcEeEEEEEEEEEeCCCeeeEEEcCeEEEEEECCEEEEeEEeCCeEecCCCeEE
Q 030102 50 PVLDAEVILTVHVVNPNITPIKYSSTTMSIFYEGSLLGSAPVKAGSQAAGSCQL 103 (183)
Q Consensus 50 ~~l~~~l~~~v~v~NPN~~~i~Y~~~~~~v~Y~g~~vg~~~ip~f~q~~~~t~~ 103 (183)
|.++.+.-+..++.|+. ++..-.+.+.+|.+|..+|++.++. .++++...
T Consensus 162 P~~~~~a~l~a~~~n~~--~~~L~~G~~~v~~dg~~vG~~~l~~--~~~ge~~~ 211 (317)
T PF13598_consen 162 PKLDPNAYLVARFKNTS--GLPLLPGPVSVYRDGTFVGESRLPH--TAPGEEFE 211 (317)
T ss_pred EccCCCeEEEEEEECCC--CCcccCCcEEEEECCEEEEeeecCC--CCCCCEEE
Confidence 44555555566677775 4445578999999999999999975 44555533
No 21
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=43.11 E-value=1e+02 Score=20.85 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=29.2
Q ss_pred EeEEEEEEEEEeCCCeeeEEEcCeEEEEEECCEEEEeEEeCCeEecCCCeEEEEEEEE
Q 030102 52 LDAEVILTVHVVNPNITPIKYSSTTMSIFYEGSLLGSAPVKAGSQAAGSCQLLHIPAR 109 (183)
Q Consensus 52 l~~~l~~~v~v~NPN~~~i~Y~~~~~~v~Y~g~~vg~~~ip~f~q~~~~t~~v~~~~~ 109 (183)
........++++|......+|+=..-.- .+..+ ...-+++..+++.+..+.+.+.
T Consensus 18 ~g~~~~~~v~l~N~s~~p~~f~v~~~~~--~~~~~-~v~~~~g~l~PG~~~~~~V~~~ 72 (102)
T PF14874_consen 18 VGQTYSRTVTLTNTSSIPARFRVRQPES--LSSFF-SVEPPSGFLAPGESVELEVTFS 72 (102)
T ss_pred cCCEEEEEEEEEECCCCCEEEEEEeCCc--CCCCE-EEECCCCEECCCCEEEEEEEEE
Confidence 4455567788999875555553111100 11112 2223466788888877765544
No 22
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=40.57 E-value=80 Score=24.28 Aligned_cols=16 Identities=31% Similarity=0.285 Sum_probs=10.7
Q ss_pred CCceeeeehHHHHHHH
Q 030102 2 GKKVKWSWNSALIGAV 17 (183)
Q Consensus 2 ~~~~~~~~~~~li~~~ 17 (183)
+++++..|...++..+
T Consensus 12 ~~~k~~~~I~liv~iv 27 (159)
T COG1580 12 KKKKKSLWILLIVLIV 27 (159)
T ss_pred cCCCceeehHHHHHHH
Confidence 4667777777766544
No 23
>COG4194 Predicted membrane protein [General function prediction only]
Probab=39.63 E-value=29 Score=29.98 Aligned_cols=40 Identities=18% Similarity=0.463 Sum_probs=30.7
Q ss_pred ceeeeehHHHHHHHHHHHheeEEEEecCCCeEEEEEEEEee
Q 030102 4 KVKWSWNSALIGAVAATATAALVTAKPKDPTFQLISIKLTS 44 (183)
Q Consensus 4 ~~~~~~~~~li~~~~~~~~l~~~v~rP~~P~~~v~~~~l~~ 44 (183)
+++|+|..+.+...+..+++. .++.|+.|+---+.+..++
T Consensus 120 ~~~wtwfL~~l~iiI~~lvig-~v~Yp~~P~~~PtH~~~sG 159 (350)
T COG4194 120 KFPWTWFLVILGIIIFTLVIG-IVYYPSAPNKMPTHVNISG 159 (350)
T ss_pred CCCeEEeHHhHHHHHHhhhhh-eeecCCCccccceeECCCC
Confidence 478999999888776666555 7899999987766666655
No 24
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=38.97 E-value=7.3 Score=32.22 Aligned_cols=68 Identities=18% Similarity=0.160 Sum_probs=36.2
Q ss_pred CCceeeeehHHHHHHHHHH--HheeEEEEecCC--------CeEEEEEEEEeeEEe--cC------------C-cEeEEE
Q 030102 2 GKKVKWSWNSALIGAVAAT--ATAALVTAKPKD--------PTFQLISIKLTSFKL--KF------------P-VLDAEV 56 (183)
Q Consensus 2 ~~~~~~~~~~~li~~~~~~--~~l~~~v~rP~~--------P~~~v~~~~l~~f~~--~~------------~-~l~~~l 56 (183)
|-+||+.+.-.++.++..+ +.+.+|+++.-. .+++=..+++.+-.- .+ | ++...=
T Consensus 31 GWRKrcLY~fvLlL~i~ivvNLalTiWIlkVm~Fs~dGmG~Lkit~~GirleG~sefl~pl~akei~Sr~~~~l~~~S~r 110 (292)
T KOG3950|consen 31 GWRKRCLYTFVLLLMILIVVNLALTIWILKVMNFSPDGMGNLKITKKGIRLEGDSEFLQPLYAKEIHSRPGSPLYLQSAR 110 (292)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccceEEccCcEEEechhhhhhhhhhhhhhcCCCCceEEEecc
Confidence 5566666665555543222 344455444221 344444555554221 00 1 466666
Q ss_pred EEEEEEeCCC-eee
Q 030102 57 ILTVHVVNPN-ITP 69 (183)
Q Consensus 57 ~~~v~v~NPN-~~~ 69 (183)
.+++++|||| ++.
T Consensus 111 nvtvnarn~~g~v~ 124 (292)
T KOG3950|consen 111 NVTVNARNPNGKVT 124 (292)
T ss_pred CeeEEccCCCCcee
Confidence 7889999999 763
No 25
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=38.08 E-value=91 Score=27.43 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=12.3
Q ss_pred CCCceeeeehHHHHHHHHHHHheeE
Q 030102 1 MGKKVKWSWNSALIGAVAATATAAL 25 (183)
Q Consensus 1 ~~~~~~~~~~~~li~~~~~~~~l~~ 25 (183)
|-++++.+|..++++++++++++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~ 25 (415)
T PRK11556 1 MKGSRKSRWVIVIVVVIAAIAAFWF 25 (415)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHh
Confidence 3444555666555555443343333
No 26
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=37.83 E-value=1.6e+02 Score=25.25 Aligned_cols=42 Identities=12% Similarity=0.040 Sum_probs=19.2
Q ss_pred eeeeehHHHHHHHHHHHheeEEEEecCCCeEEEEEEEEeeEE
Q 030102 5 VKWSWNSALIGAVAATATAALVTAKPKDPTFQLISIKLTSFK 46 (183)
Q Consensus 5 ~~~~~~~~li~~~~~~~~l~~~v~rP~~P~~~v~~~~l~~f~ 46 (183)
+++.|...++..+++.++++|..+.-..|.+.+..+.-..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~~~~ 47 (370)
T PRK11578 6 KVKKRYLIALVIVLAGGITLWRILNAPVPTYQTLIVRPGDLQ 47 (370)
T ss_pred hhhhhHHHHHHHHHHHHhhheeecCCCCCceEEEEEEeeeeE
Confidence 344565555554444444444433322345555555444443
No 27
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=37.32 E-value=36 Score=25.36 Aligned_cols=44 Identities=14% Similarity=0.105 Sum_probs=32.1
Q ss_pred EeEEEEEEEEEeCCCeeeEEEcCeEEEEEECCEEEEeEEeCCeE
Q 030102 52 LDAEVILTVHVVNPNITPIKYSSTTMSIFYEGSLLGSAPVKAGS 95 (183)
Q Consensus 52 l~~~l~~~v~v~NPN~~~i~Y~~~~~~v~Y~g~~vg~~~ip~f~ 95 (183)
.+-.+.+..+++|-.+..+..=..++++..+++..++....-++
T Consensus 60 ~~~~~~v~g~V~N~g~~~i~~c~i~~~l~~~~~~~~n~~~~~~~ 103 (149)
T PF09624_consen 60 YSESFYVDGTVTNTGKFTIKKCKITVKLYNDKQVSGNKFKEIFY 103 (149)
T ss_pred eccEEEEEEEEEECCCCEeeEEEEEEEEEeCCCccCchhhhhhc
Confidence 34567778899999988888888899998877655554443333
No 28
>PF06097 DUF945: Bacterial protein of unknown function (DUF945); InterPro: IPR010352 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=37.03 E-value=2.3e+02 Score=24.68 Aligned_cols=30 Identities=7% Similarity=0.252 Sum_probs=19.8
Q ss_pred CCeEEEEEEEEeeEEecCCcEeEEEEEEEEEeCCC
Q 030102 32 DPTFQLISIKLTSFKLKFPVLDAEVILTVHVVNPN 66 (183)
Q Consensus 32 ~P~~~v~~~~l~~f~~~~~~l~~~l~~~v~v~NPN 66 (183)
.|.++++..+.++ ..++.+....+.+..|.
T Consensus 43 ~~~~~~~~~~yer-----G~fsS~a~~~l~~~~~~ 72 (460)
T PF06097_consen 43 QPGVKVSNVSYER-----GWFSSTATYRLTLDDPE 72 (460)
T ss_pred CCceEEEEEEccc-----ccEEEEEEEEEEEcCcc
Confidence 5666555555443 45777777788888877
No 29
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=33.96 E-value=56 Score=25.21 Aligned_cols=31 Identities=13% Similarity=0.271 Sum_probs=15.6
Q ss_pred EEeCCC-eeeEEEcCeEEEEEECCEE-EEeEEe
Q 030102 61 HVVNPN-ITPIKYSSTTMSIFYEGSL-LGSAPV 91 (183)
Q Consensus 61 ~v~NPN-~~~i~Y~~~~~~v~Y~g~~-vg~~~i 91 (183)
.+...+ .+.+.|.+.-=++|=.|+. ++++.+
T Consensus 83 ~vtD~~~~v~V~Y~GilPDlFrEG~gVVveG~~ 115 (159)
T PRK13150 83 SLYDAEGSVTVSYEGILPDLFREGQGVVVQGTL 115 (159)
T ss_pred EEEcCCcEEEEEEeccCCccccCCCeEEEEEEE
Confidence 333334 4555555555555555543 355555
No 30
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=33.80 E-value=68 Score=24.37 Aligned_cols=11 Identities=27% Similarity=0.724 Sum_probs=5.7
Q ss_pred cCeEEEEEECC
Q 030102 73 SSTTMSIFYEG 83 (183)
Q Consensus 73 ~~~~~~v~Y~g 83 (183)
.+.++.|.|+|
T Consensus 80 ~~~~i~V~Y~G 90 (148)
T PRK13254 80 GNATVPVVYTG 90 (148)
T ss_pred CCeEEEEEECC
Confidence 34455555554
No 31
>PF09677 TrbI_Ftype: Type-F conjugative transfer system protein (TrbI_Ftype); InterPro: IPR014115 This entry represents TrbI, an essential component of the F-type conjugative transfer system for plasmid DNA transfer that has been shown to be localized to the periplasm [, ].
Probab=33.24 E-value=13 Score=26.84 Aligned_cols=33 Identities=18% Similarity=0.159 Sum_probs=18.5
Q ss_pred ceeeeehHHHHHHHHHH-HheeEEEEecCCCeEE
Q 030102 4 KVKWSWNSALIGAVAAT-ATAALVTAKPKDPTFQ 36 (183)
Q Consensus 4 ~~~~~~~~~li~~~~~~-~~l~~~v~rP~~P~~~ 36 (183)
+++|.|..+++.++.++ ..+.+++.++..|.+-
T Consensus 1 ~~~~l~~~~~~~~~~~~~~~vt~~l~~~~~p~iV 34 (111)
T PF09677_consen 1 RRRWLVIVLLAVAALLLSAWVTWLLASQPQPRIV 34 (111)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 35666666666444333 3345566676677543
No 32
>PF12202 OSR1_C: Oxidative-stress-responsive kinase 1 C terminal; InterPro: IPR024678 Oxidative-stress-responsive kinase 1 (OSR1) is involved in the signalling cascade which activates Na/K/2Cl co-transporter during osmotic stress. This entry represents the CCT domain found in OSR1, STE20/SPS1-related kinase and in WNK activators []. This domain is found in eukaryotes, and is approximately 40 amino acids in length. There is a single completely conserved residue F that may be functionally important. ; PDB: 2V3S_A 2LRU_A.
Probab=32.18 E-value=51 Score=19.20 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=16.6
Q ss_pred EEEEEEEeCCCeeeEEE-cCeEEEEEEC
Q 030102 56 VILTVHVVNPNITPIKY-SSTTMSIFYE 82 (183)
Q Consensus 56 l~~~v~v~NPN~~~i~Y-~~~~~~v~Y~ 82 (183)
+.+.++++||.|..=+| ++..++..|+
T Consensus 1 i~l~Lrv~d~kK~~~k~ken~aI~F~F~ 28 (38)
T PF12202_consen 1 INLRLRVRDPKKRKGKHKENEAIEFEFD 28 (38)
T ss_dssp EEEEEEEC-TTSSSSS--TCEEEEEEEE
T ss_pred CcEEEEEeccccccCccccCccEEEEEe
Confidence 46789999999644377 5566666553
No 33
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=31.47 E-value=16 Score=27.01 Aligned_cols=24 Identities=17% Similarity=0.007 Sum_probs=0.0
Q ss_pred CceeeeehHHHHHHHHHHHheeEE
Q 030102 3 KKVKWSWNSALIGAVAATATAALV 26 (183)
Q Consensus 3 ~~~~~~~~~~li~~~~~~~~l~~~ 26 (183)
+++|+.+.+++++++++++.+++.
T Consensus 4 ~~~rl~~~~~~~~~i~~~~~l~~~ 27 (131)
T PF03100_consen 4 RKKRLILVVLGLVIIAAAIYLILY 27 (131)
T ss_dssp ------------------------
T ss_pred ceeehhhHHHHHHHHHHHHHHHHH
Confidence 355666665555544444444444
No 34
>PRK10807 paraquat-inducible protein B; Provisional
Probab=31.04 E-value=23 Score=32.64 Aligned_cols=41 Identities=12% Similarity=0.179 Sum_probs=26.0
Q ss_pred eeehHHHHHHHHHHHheeEEEEecCCCeEEEEEEEEeeEEec
Q 030102 7 WSWNSALIGAVAATATAALVTAKPKDPTFQLISIKLTSFKLK 48 (183)
Q Consensus 7 ~~~~~~li~~~~~~~~l~~~v~rP~~P~~~v~~~~l~~f~~~ 48 (183)
++|+..|+.+++++- ++|-.+.=+-|.+++..-+-.++...
T Consensus 19 ~iWlvP~~a~~i~~~-l~~~~~~~~G~~itl~~~~a~gl~~G 59 (547)
T PRK10807 19 PVWIFPIVTALIGAW-ILFYHFSHQGPEVTLITTNAEGIEAG 59 (547)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHcCCeEEEEEECCCCCcCcC
Confidence 488888888765533 33334555568877776666665544
No 35
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=30.65 E-value=40 Score=26.54 Aligned_cols=16 Identities=19% Similarity=0.272 Sum_probs=11.2
Q ss_pred HHHHheeEEEEecCCC
Q 030102 18 AATATAALVTAKPKDP 33 (183)
Q Consensus 18 ~~~~~l~~~v~rP~~P 33 (183)
+.++++++.+++|++|
T Consensus 16 ~~~~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 16 AFVIVVFFRLFQPSEP 31 (187)
T ss_pred HHHhheeeEEEccCCC
Confidence 3344556779999987
No 36
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=30.40 E-value=35 Score=29.00 Aligned_cols=32 Identities=22% Similarity=0.057 Sum_probs=19.4
Q ss_pred CCceeeeehHHHHHHHHHHHheeEE-EEecCCC
Q 030102 2 GKKVKWSWNSALIGAVAATATAALV-TAKPKDP 33 (183)
Q Consensus 2 ~~~~~~~~~~~li~~~~~~~~l~~~-v~rP~~P 33 (183)
-|+.||.|.+.++.+.+++++++|+ ++.+..|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (346)
T PRK10476 5 PKKSPRKKLPALAIVALAIVALVFVIWRTDSAP 37 (346)
T ss_pred CCCCCcccchhHHHHHHHHHHHHHHheccCceE
Confidence 3678999988877665444444433 4444444
No 37
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=30.00 E-value=16 Score=30.52 Aligned_cols=19 Identities=16% Similarity=0.106 Sum_probs=14.0
Q ss_pred CCceeeeehHHHHHHHHHH
Q 030102 2 GKKVKWSWNSALIGAVAAT 20 (183)
Q Consensus 2 ~~~~~~~~~~~li~~~~~~ 20 (183)
|+|+++.|+..++++++++
T Consensus 8 Gwrk~cly~~vllL~il~i 26 (264)
T PF04790_consen 8 GWRKRCLYLFVLLLFILAI 26 (264)
T ss_pred hhhhhhHHHHHHHHHHHHH
Confidence 7788888888887765444
No 38
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=29.87 E-value=1.2e+02 Score=23.21 Aligned_cols=25 Identities=12% Similarity=0.352 Sum_probs=12.9
Q ss_pred eeeEEEcCeEEEEEECCEE-EEeEEe
Q 030102 67 ITPIKYSSTTMSIFYEGSL-LGSAPV 91 (183)
Q Consensus 67 ~~~i~Y~~~~~~v~Y~g~~-vg~~~i 91 (183)
.+.+.|.+.-=++|=.|+. |+++.+
T Consensus 84 ~v~V~Y~GilPDlFrEGqgVVaeG~~ 109 (155)
T PRK13159 84 ATQVEYTGILPDLFRDNQSVIANGRM 109 (155)
T ss_pred EEEEEEccCCCccccCCCeEEEEEEE
Confidence 4555555554455544543 355555
No 39
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=29.82 E-value=34 Score=26.31 Aligned_cols=25 Identities=12% Similarity=0.212 Sum_probs=11.2
Q ss_pred EEEEEeCCCeeeEEEcCeEEEEEECCE
Q 030102 58 LTVHVVNPNITPIKYSSTTMSIFYEGS 84 (183)
Q Consensus 58 ~~v~v~NPN~~~i~Y~~~~~~v~Y~g~ 84 (183)
+.++...++ +-+|=...+.+.+++.
T Consensus 76 fvvNl~~~~--~~ryLkv~i~l~~~d~ 100 (170)
T PRK05696 76 FVFNVPGNG--RDRLVQIKVQLMVRGS 100 (170)
T ss_pred EEEEecCCC--CceEEEEEEEEEECCH
Confidence 334443343 2345445555555443
No 40
>PF11606 AlcCBM31: Family 31 carbohydrate binding protein; InterPro: IPR021016 Beta-1,3-xylan is a homopolymer of b-1,3-linked D-xylose and is a polysaccharide peculiar to marine algae. Beta-1,3-xylanase is a beta-1,3-xylan hydrolyzing enzyme [].; GO: 0033905 xylan endo-1,3-beta-xylosidase activity; PDB: 2COV_F.
Probab=28.60 E-value=38 Score=23.35 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=17.8
Q ss_pred eCCC-eeeEEE-cCeEEEEEECCE
Q 030102 63 VNPN-ITPIKY-SSTTMSIFYEGS 84 (183)
Q Consensus 63 ~NPN-~~~i~Y-~~~~~~v~Y~g~ 84 (183)
+||+ .++++| ++.+++|+..+.
T Consensus 4 e~c~~dFg~~Yvsds~ievfH~d~ 27 (93)
T PF11606_consen 4 ENCSEDFGYNYVSDSEIEVFHKDN 27 (93)
T ss_dssp GGGTSSEEEEEEETTEEEEEEE--
T ss_pred CCcchhhCeeeecCceEEEEEecC
Confidence 5788 899999 999999988765
No 41
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=28.36 E-value=1.2e+02 Score=24.67 Aligned_cols=42 Identities=24% Similarity=0.326 Sum_probs=28.8
Q ss_pred EEEEeCCCeeeEEEcCeEEEEEECCEEEEeEEeCCeEecCCCeEEEE
Q 030102 59 TVHVVNPNITPIKYSSTTMSIFYEGSLLGSAPVKAGSQAAGSCQLLH 105 (183)
Q Consensus 59 ~v~v~NPN~~~i~Y~~~~~~v~Y~g~~vg~~~ip~f~q~~~~t~~v~ 105 (183)
.++++||-...+.+.+.++.. +|..++ +...+++++++..+.
T Consensus 166 ~l~v~Nptpy~vtl~~~~l~~--~~~~~~---~~~~mv~P~s~~~~~ 207 (235)
T COG3121 166 LLTVKNPTPYYVTLANLTLNV--GGRKLG---LNSGMVAPFSTRQFP 207 (235)
T ss_pred EEEEECCCCcEEEEEEEEEee--CceecC---CCcceECCCccceee
Confidence 588999996666666666665 677666 556667777665544
No 42
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=28.34 E-value=2.5e+02 Score=20.80 Aligned_cols=52 Identities=19% Similarity=0.179 Sum_probs=31.2
Q ss_pred cEeEEEEEEEEEeCCC-eeeEEEcCeEEEEEEC--CEEEEeEEeCCeEecCCCeEEEE
Q 030102 51 VLDAEVILTVHVVNPN-ITPIKYSSTTMSIFYE--GSLLGSAPVKAGSQAAGSCQLLH 105 (183)
Q Consensus 51 ~l~~~l~~~v~v~NPN-~~~i~Y~~~~~~v~Y~--g~~vg~~~ip~f~q~~~~t~~v~ 105 (183)
....+|++++++||.+ +-++.-...+ ||+ |..+-.---.|.+.++-.+..+-
T Consensus 20 ~~~~~Lt~tLSiRNtd~~~~i~i~~v~---Yydt~G~lvr~yl~~Pi~L~Pl~t~~~v 74 (125)
T PF11322_consen 20 HRPFNLTATLSIRNTDPTDPIYITSVD---YYDTDGKLVRSYLDKPIYLKPLATTEFV 74 (125)
T ss_pred CceEeEEEEEEEEcCCCCCCEEEEEEE---EECCCCeEhHHhcCCCeEcCCCceEEEE
Confidence 4566788889999988 5444432221 333 44554444456777777776653
No 43
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=27.65 E-value=1.9e+02 Score=26.17 Aligned_cols=48 Identities=19% Similarity=0.342 Sum_probs=34.9
Q ss_pred CcEeEEEEEEEEEeCCCeeeEEEcCeEEEEEECCEEEEeEEeCCeEecCCCe
Q 030102 50 PVLDAEVILTVHVVNPNITPIKYSSTTMSIFYEGSLLGSAPVKAGSQAAGSC 101 (183)
Q Consensus 50 ~~l~~~l~~~v~v~NPN~~~i~Y~~~~~~v~Y~g~~vg~~~ip~f~q~~~~t 101 (183)
|.++...-+..++.|+. +...-.+.+.+|.+|..+|.+.++. .+++..
T Consensus 361 P~~~~~a~l~A~~~N~s--~~~Ll~G~~~v~~dg~fvG~~~l~~--~~~ge~ 408 (525)
T TIGR02231 361 PSLNSTAFLEASFKNTS--DFPLLPGEVNIFRGNGFVGRSHLEN--VAPGER 408 (525)
T ss_pred ccCCchheEEEEEEcCC--CCcccCCceEEEECCEeEEeeecCC--CCCCCe
Confidence 55565566677888886 3455667899999999999999973 444444
No 44
>COG3008 PqiB Paraquat-inducible protein B [General function prediction only]
Probab=27.33 E-value=35 Score=31.41 Aligned_cols=42 Identities=14% Similarity=0.213 Sum_probs=28.4
Q ss_pred Cceee--eehHHHHHHHHHHHheeEEEEecCCCeEEEEEEEEeeE
Q 030102 3 KKVKW--SWNSALIGAVAATATAALVTAKPKDPTFQLISIKLTSF 45 (183)
Q Consensus 3 ~~~~~--~~~~~li~~~~~~~~l~~~v~rP~~P~~~v~~~~l~~f 45 (183)
++|+| .|+..|+.++++ +.|.|-.++=+-|++++.=.+=+++
T Consensus 16 ~~r~~SpiWllPivAl~ig-awL~~~~~~~~G~~Itl~f~saeGI 59 (553)
T COG3008 16 KKRRISPIWLLPIVALLIG-AWLLFQHVQDRGPEITLTFESAEGI 59 (553)
T ss_pred eecCCCchHHHHHHHHHHH-HHHHHHHHHhcCCeEEEEecCcccc
Confidence 45667 799999987765 4456667787888877654443443
No 45
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.18 E-value=28 Score=27.52 Aligned_cols=38 Identities=18% Similarity=0.291 Sum_probs=23.6
Q ss_pred eeeeehHHHHHHH--HHHHheeEEEEecCCCeEEEEEEEE
Q 030102 5 VKWSWNSALIGAV--AATATAALVTAKPKDPTFQLISIKL 42 (183)
Q Consensus 5 ~~~~~~~~li~~~--~~~~~l~~~v~rP~~P~~~v~~~~l 42 (183)
.-|.|.-.++.+. +.++.++..++.|++|...+.+++=
T Consensus 9 n~WKw~f~iLLAln~l~~~~i~~~vlsp~ee~t~~~~a~~ 48 (197)
T COG4698 9 NYWKWLFFILLALNTLLAVLIALFVLSPREEPTHLEDASE 48 (197)
T ss_pred cHHHHHHHHHHHHHHHHHHHhheeeccCCCCCchhhccCc
Confidence 3477765555432 2223345669999998877776654
No 46
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=27.06 E-value=34 Score=25.57 Aligned_cols=13 Identities=8% Similarity=0.146 Sum_probs=6.4
Q ss_pred EcCeEEEEEECCE
Q 030102 72 YSSTTMSIFYEGS 84 (183)
Q Consensus 72 Y~~~~~~v~Y~g~ 84 (183)
|=..++.+.+++.
T Consensus 64 ylk~~i~l~~~~~ 76 (142)
T PRK07718 64 FIRIQFKIETDSK 76 (142)
T ss_pred EEEEEEEEEECCH
Confidence 4345555555544
No 47
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=26.96 E-value=26 Score=26.02 Aligned_cols=37 Identities=16% Similarity=0.280 Sum_probs=24.1
Q ss_pred ceeeeehHHHHHH-HHHHHheeEEEEecCCCeEEEEEE
Q 030102 4 KVKWSWNSALIGA-VAATATAALVTAKPKDPTFQLISI 40 (183)
Q Consensus 4 ~~~~~~~~~li~~-~~~~~~l~~~v~rP~~P~~~v~~~ 40 (183)
+|.|.|.++++.. +++-+.+.|++.|-..|.+-+=|.
T Consensus 15 ~~~~~~~~~~~~~~~~~~a~~s~~~~~~~~P~iV~FDm 52 (128)
T PRK13717 15 RSHWWWTVPGCLAMVLLNAAVSYGIVRLNAPVTAAFNM 52 (128)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeh
Confidence 5667777776653 333356778888888888655443
No 48
>PF10830 DUF2553: Protein of unknown function (DUF2553); InterPro: IPR020140 This entry contains proteins with no known function.
Probab=26.36 E-value=1.2e+02 Score=20.43 Aligned_cols=29 Identities=7% Similarity=0.290 Sum_probs=23.5
Q ss_pred CCeeeEEEcCeEEEEEECCEEEEeEEeCC
Q 030102 65 PNITPIKYSSTTMSIFYEGSLLGSAPVKA 93 (183)
Q Consensus 65 PN~~~i~Y~~~~~~v~Y~g~~vg~~~ip~ 93 (183)
.|++.=+|.+..+++++++..||...++.
T Consensus 7 Td~V~gkf~ng~l~LY~~~e~IG~~~~~~ 35 (76)
T PF10830_consen 7 TDKVTGKFKNGGLELYHDNEMIGEIYMTE 35 (76)
T ss_pred ecceEEEecCCcEEEEeccceeeeEccCC
Confidence 35666688899999999999999877653
No 49
>PF10614 CsgF: Type VIII secretion system (T8SS), CsgF protein; InterPro: IPR018893 Fimbriae are cell-surface protein polymers, of e.g. Escherichia coli and Salmonella spp, that mediate interactions important for host and environmental persistence, development of biofilms, motility, colonisation and invasion of cells, and conjugation. Four general assembly pathways for different fimbriae have been proposed, one of which is extracellular nucleation-precipitation (ENP), that differs from the others in that fibre-growth occurs extracellularly. Thin aggregative fimbriae (Tafi) are the only fimbriae dependent on the ENP pathway. Tafi were first identified in Salmonella spp. and the controlling operon termed agf; however subsequent isolation of the homologous operon in E. coli led to its being called csg. Tafi are known as curli because, in the absence of extracellular polysaccharides, their morphology appears curled; however, when expressed with such polysaccharides their morphology appears as a tangled amorphous matrix []. CsgF is one of three putative curli assembly factors appearing to act as a nucleator protein. Unlike eukaryotic amyloid formation, curli biogenesis is a productive pathway requiring a specific assembly machinery [].
Probab=26.05 E-value=26 Score=26.52 Aligned_cols=11 Identities=27% Similarity=0.640 Sum_probs=8.7
Q ss_pred EEEEecCCCeE
Q 030102 25 LVTAKPKDPTF 35 (183)
Q Consensus 25 ~~v~rP~~P~~ 35 (183)
=+||+|..|.|
T Consensus 23 eLVY~PvNPsF 33 (142)
T PF10614_consen 23 ELVYTPVNPSF 33 (142)
T ss_pred heEeeccCCCC
Confidence 45999998874
No 50
>PF07680 DoxA: TQO small subunit DoxA; InterPro: IPR011636 Thiosulphate:quinone oxidoreductase (TQO) catalyses one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon Acidianus ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in Q8AAF0 from SWISSPROT.
Probab=24.91 E-value=1.7e+02 Score=21.82 Aligned_cols=43 Identities=12% Similarity=0.292 Sum_probs=31.8
Q ss_pred EEEecCCCeEEEEEEEEeeEEecC-------CcEeEEEEEEEEEeCCC-ee
Q 030102 26 VTAKPKDPTFQLISIKLTSFKLKF-------PVLDAEVILTVHVVNPN-IT 68 (183)
Q Consensus 26 ~v~rP~~P~~~v~~~~l~~f~~~~-------~~l~~~l~~~v~v~NPN-~~ 68 (183)
+.=+.+.|++++.++.+.+=++.. +....++.+.+.+.|+| ++
T Consensus 10 LhN~S~~P~~eis~~~~~~~~L~f~vyr~~G~D~Ygsfl~~i~l~d~~g~v 60 (133)
T PF07680_consen 10 LHNKSVKPKLEISDALIENGTLSFHVYRVEGPDVYGSFLIGIQLKDSTGHV 60 (133)
T ss_pred eecCCcCccEEEeeeEEeCCeEEEEEEEcCCCccCCceeeEEEEECCCCCE
Confidence 456788999999999888644321 46777888888888888 54
No 51
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=22.59 E-value=35 Score=20.60 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=12.7
Q ss_pred eehHHHHHHHHHHHheeE
Q 030102 8 SWNSALIGAVAATATAAL 25 (183)
Q Consensus 8 ~~~~~li~~~~~~~~l~~ 25 (183)
.|+..++.+++.+.+++|
T Consensus 3 ~wlt~iFsvvIil~If~~ 20 (49)
T PF11044_consen 3 TWLTTIFSVVIILGIFAW 20 (49)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 478888887777666554
No 52
>PRK14758 hypothetical protein; Provisional
Probab=22.06 E-value=33 Score=18.25 Aligned_cols=16 Identities=13% Similarity=0.140 Sum_probs=10.0
Q ss_pred eeeeehHHHHHHHHHH
Q 030102 5 VKWSWNSALIGAVAAT 20 (183)
Q Consensus 5 ~~~~~~~~li~~~~~~ 20 (183)
++++....|+|++++.
T Consensus 7 FEliLivlIlCalia~ 22 (27)
T PRK14758 7 FEFILIILILCALIAA 22 (27)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456667777876543
No 53
>COG3117 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.33 E-value=59 Score=25.79 Aligned_cols=21 Identities=14% Similarity=0.506 Sum_probs=15.6
Q ss_pred EEecCCCeEEEEEEEEeeEEe
Q 030102 27 TAKPKDPTFQLISIKLTSFKL 47 (183)
Q Consensus 27 v~rP~~P~~~v~~~~l~~f~~ 47 (183)
+-.|..|.|+.+++.-..|+-
T Consensus 34 ~~~~d~p~Y~~e~~~~~~~de 54 (188)
T COG3117 34 RPNPDEPAYTMEGLDTTVYDE 54 (188)
T ss_pred ccCCCCCceeecCcceeEECC
Confidence 456777999988887776664
No 54
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=20.68 E-value=23 Score=21.56 Aligned_cols=15 Identities=7% Similarity=-0.029 Sum_probs=10.7
Q ss_pred HHHHheeEEEEecCC
Q 030102 18 AATATAALVTAKPKD 32 (183)
Q Consensus 18 ~~~~~l~~~v~rP~~ 32 (183)
+..+++++++|+|+.
T Consensus 21 ~~Figiv~wa~~p~~ 35 (48)
T cd01324 21 LFFLGVVVWAFRPGR 35 (48)
T ss_pred HHHHHHHHHHhCCCc
Confidence 344566788999886
No 55
>PF10814 DUF2562: Protein of unknown function (DUF2562); InterPro: IPR024245 This protein of unknown function appears to be found predominantly in Mycobacterium spp.
Probab=20.58 E-value=77 Score=23.52 Aligned_cols=26 Identities=23% Similarity=0.219 Sum_probs=11.3
Q ss_pred eehHHHHH-HHHHHHheeEE-EEecCCC
Q 030102 8 SWNSALIG-AVAATATAALV-TAKPKDP 33 (183)
Q Consensus 8 ~~~~~li~-~~~~~~~l~~~-v~rP~~P 33 (183)
.|+.+.+. ++++...++|. +=|++.|
T Consensus 91 plliagv~~~vLagGavAfsivRRs~~~ 118 (133)
T PF10814_consen 91 PLLIAGVAVAVLAGGAVAFSIVRRSSRP 118 (133)
T ss_pred chHHHHHHHHHHhccceEEEEeecCCCC
Confidence 34444443 33333445555 4444444
Done!