Query 030102
Match_columns 183
No_of_seqs 114 out of 605
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 13:38:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030102.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030102hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.8 2.2E-08 7.7E-13 77.1 9.8 103 31-141 43-147 (174)
2 1xo8_A AT1G01470; structural g 98.7 9.2E-09 3.2E-13 77.6 5.0 102 31-140 20-123 (151)
3 3but_A Uncharacterized protein 98.5 3.4E-06 1.2E-10 62.4 12.7 68 51-118 15-83 (136)
4 2l0d_A Cell surface protein; s 50.1 60 0.0021 22.4 8.4 64 33-106 3-67 (114)
5 2l8s_A Integrin alpha-1; trans 45.9 2.3 8E-05 25.9 -1.2 20 1-20 1-20 (54)
6 3me0_B PAPG protein; immunoglo 31.6 99 0.0034 21.9 5.2 78 28-107 9-104 (128)
7 2kj1_A BM2 protein; cytoplasmi 24.8 17 0.00057 23.4 0.2 14 55-68 9-22 (89)
8 1nrp_R Receptor based peptide 19.8 25 0.00087 17.4 0.2 8 61-68 7-15 (26)
9 1nro_R Receptor based peptide 17.4 33 0.0011 17.1 0.3 8 61-68 7-15 (27)
10 2jz2_A SSL0352 protein; SH3-li 15.8 1E+02 0.0035 19.1 2.4 8 59-66 7-14 (66)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.82 E-value=2.2e-08 Score=77.13 Aligned_cols=103 Identities=12% Similarity=0.195 Sum_probs=84.0
Q ss_pred CCCeEEEEEEEEeeEEecCCcEeEEEEEEEEEeCCCeeeEEEcCeEEEEEECCEEEEeEEeC-CeEecCCCeEEEEEEEE
Q 030102 31 KDPTFQLISIKLTSFKLKFPVLDAEVILTVHVVNPNITPIKYSSTTMSIFYEGSLLGSAPVK-AGSQAAGSCQLLHIPAR 109 (183)
Q Consensus 31 ~~P~~~v~~~~l~~f~~~~~~l~~~l~~~v~v~NPN~~~i~Y~~~~~~v~Y~g~~vg~~~ip-~f~q~~~~t~~v~~~~~ 109 (183)
+.|+++++++++.+++.. ..++.+.+++.|||..++.+.+.+.++.-+|..++++..| ++..|+++++.+.+++.
T Consensus 43 ~~PeV~v~~v~~~~~~l~----~~~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v~Vpv~ 118 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRD----GVDYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLDVPVK 118 (174)
T ss_dssp CCCEEEEEEEEEEEECSS----SEEEEEEEEEEECSSSCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEEEEEEEE
T ss_pred CCCEEEEEEeEEeccccc----eEEEEEEEEEECCCCCCccccceEEEEEECCEEEEEEecCCCceECCCCcEEEEEEEE
Confidence 689999999999988754 4778899999999999999999999999999999999997 68999999999998888
Q ss_pred Eeccccccchhhhhhccc-cCeEEEEEEEEEEE
Q 030102 110 LDGLELAHHARKFFADVA-KREMLFEAKVDIEG 141 (183)
Q Consensus 110 ~~~~~l~~~~~~l~~d~~-~g~v~l~~~~~v~~ 141 (183)
+.-..+ ..+..|+. .+.++.++++++.+
T Consensus 119 v~~~~l----~~~~~~l~~~~~i~Y~L~g~L~i 147 (174)
T 1yyc_A 119 VAYSIA----VSLMKDMCTDWDIDYQLDIGLTF 147 (174)
T ss_dssp ESHHHH----HHTCCCCCSSEEECEEEEEEEEE
T ss_pred EEHHHH----HHHHHhcCCCCccceEEEEEEEe
Confidence 764332 23445553 45788776665543
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=98.74 E-value=9.2e-09 Score=77.61 Aligned_cols=102 Identities=20% Similarity=0.285 Sum_probs=81.8
Q ss_pred CCCeEEEEEEEEeeEEecCCcEeEEEEEEEEEeCCCeeeEEEcCeEEEEEECCEEEEeEEeC-CeEecCCCeEEEEEEEE
Q 030102 31 KDPTFQLISIKLTSFKLKFPVLDAEVILTVHVVNPNITPIKYSSTTMSIFYEGSLLGSAPVK-AGSQAAGSCQLLHIPAR 109 (183)
Q Consensus 31 ~~P~~~v~~~~l~~f~~~~~~l~~~l~~~v~v~NPN~~~i~Y~~~~~~v~Y~g~~vg~~~ip-~f~q~~~~t~~v~~~~~ 109 (183)
+.|+++++++++.+++. ...++.+.+++.|||..++.+.+.+.++.-+|++++++..+ ++..|+++++.+.+++.
T Consensus 20 ~~P~v~v~~v~~~~~~~----~~~~~~~~l~V~NPN~~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~v~vpv~ 95 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNR----DSVEYLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTALDIPVV 95 (151)
T ss_dssp CSCCCBCSEEEECCCTT----TEECEEEEEEEECSSSSCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEEEEECCC
T ss_pred CCCEEEEEEeEEeccCc----ceeEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEecCCCcEECCCCcEEEEEEEE
Confidence 67999999998887654 45678899999999999999999999999999999999997 69999999999988877
Q ss_pred Eeccccccchhhhhhcc-ccCeEEEEEEEEEE
Q 030102 110 LDGLELAHHARKFFADV-AKREMLFEAKVDIE 140 (183)
Q Consensus 110 ~~~~~l~~~~~~l~~d~-~~g~v~l~~~~~v~ 140 (183)
+.-..+.+ +..++ ..+.++.++++++.
T Consensus 96 v~~~~l~~----~~~~l~~~~~i~Y~l~g~l~ 123 (151)
T 1xo8_A 96 VPYSILFN----LARDVGVDWDIDYELQIGLT 123 (151)
T ss_dssp EEHHHHHH----HHHHHHHHSEEEEEEEEEEE
T ss_pred EEHHHHHH----HHHhcccCCcccEEEEEEEE
Confidence 77543333 33333 35788888655554
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=98.48 E-value=3.4e-06 Score=62.38 Aligned_cols=68 Identities=19% Similarity=0.196 Sum_probs=59.9
Q ss_pred cEeEEEEEEEEEeCCCeeeEEEcCeEEEEEECCEEEEeEEe-CCeEecCCCeEEEEEEEEEeccccccc
Q 030102 51 VLDAEVILTVHVVNPNITPIKYSSTTMSIFYEGSLLGSAPV-KAGSQAAGSCQLLHIPARLDGLELAHH 118 (183)
Q Consensus 51 ~l~~~l~~~v~v~NPN~~~i~Y~~~~~~v~Y~g~~vg~~~i-p~f~q~~~~t~~v~~~~~~~~~~l~~~ 118 (183)
.-...+.+.+++.|||..++.+++.+.+++.+|.++|++.. ..+..|+.+++.+.+++.++..++...
T Consensus 15 ~~~t~~~~~l~V~NPN~~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~~~ 83 (136)
T 3but_A 15 DSQTEIVALAKVRNEDVVPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLREW 83 (136)
T ss_dssp SSEEEEEEEEEEECCSSSCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHTTH
T ss_pred CcEEEEEEEEEEeCCCCcceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhHHH
Confidence 34567889999999999999999999999999999999986 589999999999999988887776653
No 4
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=50.06 E-value=60 Score=22.39 Aligned_cols=64 Identities=14% Similarity=0.212 Sum_probs=40.8
Q ss_pred CeEEEEEEEEeeEEecCCcEeEEEEEEEEEeCCC-eeeEEEcCeEEEEEECCEEEEeEEeCCeEecCCCeEEEEE
Q 030102 33 PTFQLISIKLTSFKLKFPVLDAEVILTVHVVNPN-ITPIKYSSTTMSIFYEGSLLGSAPVKAGSQAAGSCQLLHI 106 (183)
Q Consensus 33 P~~~v~~~~l~~f~~~~~~l~~~l~~~v~v~NPN-~~~i~Y~~~~~~v~Y~g~~vg~~~ip~f~q~~~~t~~v~~ 106 (183)
|.+.+.+++ ...|.-+-...+.++++|.- ..+ .+..+.++-+|..++...+++ ..++.++.+..
T Consensus 3 PDL~vt~it-----P~~~~~~~~~ti~atVkN~G~~~a---~~~~V~ly~~g~~v~t~~v~~--LaaG~s~tv~~ 67 (114)
T 2l0d_A 3 PDLVPVSLT-----PVTVVPNTVNTMTATIENQGNKDS---TSFNVSLLVDGIVVDTQTVTS--LESENSTNVDF 67 (114)
T ss_dssp CCEEEEEEE-----CSEECTTSEEEEEEEEEECSSSCB---CCEEEEEEETTEEEEEEEESC--BCBTCEEEEEE
T ss_pred CCcEEEecc-----CCCcCCCCeEEEEEEEEECCCCCC---CCEEEEEEECCEEEcceeccc--ccCCCEEEEEE
Confidence 666666652 22234556667788999987 332 456777888999999888764 44455554443
No 5
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=45.90 E-value=2.3 Score=25.90 Aligned_cols=20 Identities=25% Similarity=0.179 Sum_probs=12.5
Q ss_pred CCCceeeeehHHHHHHHHHH
Q 030102 1 MGKKVKWSWNSALIGAVAAT 20 (183)
Q Consensus 1 ~~~~~~~~~~~~li~~~~~~ 20 (183)
||-+....|+.-++++++++
T Consensus 1 ~~~~~~vp~WiIi~svl~GL 20 (54)
T 2l8s_A 1 MGLPGRVPLWVILLSAFAGL 20 (54)
T ss_dssp CCCCCCCCTHHHHHHHHHHH
T ss_pred CCCCccCchHHHHHHHHHHH
Confidence 78777777776655544333
No 6
>3me0_B PAPG protein; immunoglobulin pilin chaperone, chaperone, fimbrium, immunog domain; HET: MSE; 2.03A {Escherichia coli} PDB: 2wmp_B
Probab=31.58 E-value=99 Score=21.94 Aligned_cols=78 Identities=10% Similarity=0.062 Sum_probs=41.2
Q ss_pred EecCCCeEEEEEEEEeeEEecCC----------cEeEEEEEEEEEeC--C-----CeeeEEE-cCeEEEEEECCEEEEeE
Q 030102 28 AKPKDPTFQLISIKLTSFKLKFP----------VLDAEVILTVHVVN--P-----NITPIKY-SSTTMSIFYEGSLLGSA 89 (183)
Q Consensus 28 ~rP~~P~~~v~~~~l~~f~~~~~----------~l~~~l~~~v~v~N--P-----N~~~i~Y-~~~~~~v~Y~g~~vg~~ 89 (183)
.||..|.++++.=.|..=++... +..+++.+.++ +| | .++.+-- ++.+..++-+|+..++.
T Consensus 9 ~~~~~~~l~IdHG~ls~~~a~Gnt~~~~isV~Ct~p~~Vki~lt-~~~~p~~~~~~~f~V~L~ngl~S~l~lNG~~~~e~ 87 (128)
T 3me0_B 9 CRPSAQSLEIKHGDLSINSANNHYAAQTLSVSCDVPANIRFMLL-RNTTPTYSHGKKFSVGLGHGWDSIVSVNGVDTGET 87 (128)
T ss_dssp EEECCSCCEEECCCSSSSCCSSCEEEEEEEEEESSCEEEEEEEE-ECSCCSSCCTTSCEEEEETTEEEEEEETTBCSSEE
T ss_pred cCCCCCceecccceechhhcCCCEEeeEEEEEeCCCceEEEEEe-cCCcccccccCceEEecCCCeEEEEEECCeeccce
Confidence 58888888876544432222110 12222233332 33 2 2233333 57888888999988888
Q ss_pred EeCCeEecCCCeEEEEEE
Q 030102 90 PVKAGSQAAGSCQLLHIP 107 (183)
Q Consensus 90 ~ip~f~q~~~~t~~v~~~ 107 (183)
.+ .|+.+..++-.+...
T Consensus 88 ~~-~~~~~~s~tvtV~S~ 104 (128)
T 3me0_B 88 TM-RWYKAGTQNLTIGSR 104 (128)
T ss_dssp EE-EESSSEEEEEEEEEE
T ss_pred eE-EEEecCCcEEEEEEE
Confidence 77 444444344334333
No 7
>2kj1_A BM2 protein; cytoplasmic domain, coiled coil, transport protein; NMR {Influenza b virus}
Probab=24.76 E-value=17 Score=23.37 Aligned_cols=14 Identities=21% Similarity=0.415 Sum_probs=3.9
Q ss_pred EEEEEEEEeCCCee
Q 030102 55 EVILTVHVVNPNIT 68 (183)
Q Consensus 55 ~l~~~v~v~NPN~~ 68 (183)
.+++.++++|||+-
T Consensus 9 gv~lki~ir~pnke 22 (89)
T 2kj1_A 9 GVNMKIRIKGPNKE 22 (89)
T ss_dssp ---------CCCHH
T ss_pred cCceEEEecCCCHH
Confidence 35567899999953
No 8
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=19.83 E-value=25 Score=17.37 Aligned_cols=8 Identities=38% Similarity=0.380 Sum_probs=6.0
Q ss_pred EEeCCC-ee
Q 030102 61 HVVNPN-IT 68 (183)
Q Consensus 61 ~v~NPN-~~ 68 (183)
-.+||| |.
T Consensus 7 llrnpndky 15 (26)
T 1nrp_R 7 LLRNPNDKY 15 (26)
T ss_pred hhcCCCccc
Confidence 468999 65
No 9
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=17.41 E-value=33 Score=17.08 Aligned_cols=8 Identities=38% Similarity=0.380 Sum_probs=5.9
Q ss_pred EEeCCC-ee
Q 030102 61 HVVNPN-IT 68 (183)
Q Consensus 61 ~v~NPN-~~ 68 (183)
-.+||| +.
T Consensus 7 llrnpndky 15 (27)
T 1nro_R 7 LLRNPNDKY 15 (27)
T ss_pred cccCCCccc
Confidence 468999 64
No 10
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=15.84 E-value=1e+02 Score=19.13 Aligned_cols=8 Identities=50% Similarity=0.588 Sum_probs=6.9
Q ss_pred EEEEeCCC
Q 030102 59 TVHVVNPN 66 (183)
Q Consensus 59 ~v~v~NPN 66 (183)
.+.+.|||
T Consensus 7 ~V~V~np~ 14 (66)
T 2jz2_A 7 TVRVTNVD 14 (66)
T ss_dssp EEEECCTT
T ss_pred EEEEeCCC
Confidence 57899999
Done!