BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030103
         (183 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2D16|A Chain A, Crystal Structure Of Ph1918 Protein From Pyrococcus
          Horikoshii Ot3
 pdb|2D16|B Chain B, Crystal Structure Of Ph1918 Protein From Pyrococcus
          Horikoshii Ot3
 pdb|2D16|C Chain C, Crystal Structure Of Ph1918 Protein From Pyrococcus
          Horikoshii Ot3
 pdb|2D16|D Chain D, Crystal Structure Of Ph1918 Protein From Pyrococcus
          Horikoshii Ot3
          Length = 162

 Score = 29.3 bits (64), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 7  SIVLGKTNFSIFKVNQILRELSREWPGNSYDL 38
           +++G+ NFSIF V+ + R L    PG  + +
Sbjct: 16 EVIIGQGNFSIFTVDDLARALLTAVPGIKFGI 47


>pdb|2WP7|A Chain A, Crystal Structure Of Desumoylase(Duf862)
          Length = 168

 Score = 27.3 bits (59), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 33  GNSYDLLGRNCNHFCDEFCDRLGVPKLPGWV 63
           G +Y+L   NCN F +E    L   K+P ++
Sbjct: 98  GEAYNLFEHNCNTFSNEVAQFLTGRKIPSYI 128


>pdb|3EBQ|A Chain A, Crystal Structure Of Human Pppde1
          Length = 170

 Score = 27.3 bits (59), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 33  GNSYDLLGRNCNHFCDEFCDRLGVPKLPGWVN 64
           G +Y+L   NCN F +E    L   K+P ++ 
Sbjct: 100 GEAYNLFEHNCNTFSNEVAQFLTGRKIPSYIT 131


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.133    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,307,374
Number of Sequences: 62578
Number of extensions: 144521
Number of successful extensions: 246
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 243
Number of HSP's gapped (non-prelim): 3
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)