BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030103
(183 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93VG8|PPDEX_ARATH DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486
PE=2 SV=1
Length = 224
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 44/69 (63%)
Query: 2 YTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLPG 61
+ +R S++LG T+ S + +LSR++ G++Y L+ +NCNHF +E C +L +PG
Sbjct: 84 FIFRRSVLLGTTSMSRSDFRSYMEKLSRKYHGDTYHLIAKNCNHFTEEVCLQLTGKPIPG 143
Query: 62 WVNRFANAG 70
W+NR A G
Sbjct: 144 WINRLARVG 152
>sp|Q6DC39|DESI2_DANRE Desumoylating isopeptidase 2 OS=Danio rerio GN=desi2 PE=2 SV=1
Length = 196
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 44/66 (66%)
Query: 2 YTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLPG 61
+ ++E+IVLG T+F+ V +I+ E+ +E+ GN+Y L+ +NCNHF + L ++P
Sbjct: 66 FKFKEAIVLGSTDFTEEDVERIVEEMGKEYKGNAYHLMHKNCNHFSSALSEILCGREIPR 125
Query: 62 WVNRFA 67
WVNR A
Sbjct: 126 WVNRLA 131
>sp|Q5ZIV7|DESI2_CHICK Desumoylating isopeptidase 2 OS=Gallus gallus GN=DESI2 PE=2 SV=1
Length = 193
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 43/66 (65%)
Query: 2 YTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLPG 61
+ ++E++VLG T+F + +I+ EL +E+ GN+Y L+ +NCNHF + L ++P
Sbjct: 66 FKFKEAVVLGSTDFMEDDIEKIVEELGKEFKGNAYHLMHKNCNHFSSALSEILCGKEIPR 125
Query: 62 WVNRFA 67
WVNR A
Sbjct: 126 WVNRLA 131
>sp|Q5PQ09|DESI2_XENLA Desumoylating isopeptidase 2 OS=Xenopus laevis GN=desi2 PE=2 SV=1
Length = 192
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 43/66 (65%)
Query: 2 YTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLPG 61
+ ++E+I LG T+F+ + +I+ EL +E+ GN+Y L+ +NCNHF + L ++P
Sbjct: 66 FKFKEAIALGSTDFTENDIEKIIEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPR 125
Query: 62 WVNRFA 67
WVNR A
Sbjct: 126 WVNRLA 131
>sp|Q5XIT6|DESI2_RAT Desumoylating isopeptidase 2 OS=Rattus norvegicus GN=Desi2 PE=2
SV=1
Length = 194
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 43/66 (65%)
Query: 2 YTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLPG 61
+ ++E++VLG T+F + +I+ EL +E+ GN+Y L+ +NCNHF + L ++P
Sbjct: 67 FKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPR 126
Query: 62 WVNRFA 67
W+NR A
Sbjct: 127 WINRLA 132
>sp|Q9D291|DESI2_MOUSE Desumoylating isopeptidase 2 OS=Mus musculus GN=Desi2 PE=2 SV=1
Length = 194
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 43/66 (65%)
Query: 2 YTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLPG 61
+ ++E++VLG T+F + +I+ EL +E+ GN+Y L+ +NCNHF + L ++P
Sbjct: 67 FKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPR 126
Query: 62 WVNRFA 67
W+NR A
Sbjct: 127 WINRLA 132
>sp|Q5R456|DESI2_PONAB Desumoylating isopeptidase 2 OS=Pongo abelii GN=DESI2 PE=2 SV=1
Length = 194
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 43/66 (65%)
Query: 2 YTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLPG 61
+ ++E++VLG T+F + +I+ EL +E+ GN+Y L+ +NCNHF + L ++P
Sbjct: 67 FKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPR 126
Query: 62 WVNRFA 67
W+NR A
Sbjct: 127 WINRLA 132
>sp|Q9BSY9|DESI2_HUMAN Desumoylating isopeptidase 2 OS=Homo sapiens GN=DESI2 PE=1 SV=1
Length = 194
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 43/66 (65%)
Query: 2 YTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLPG 61
+ ++E++VLG T+F + +I+ EL +E+ GN+Y L+ +NCNHF + L ++P
Sbjct: 67 FKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPR 126
Query: 62 WVNRFA 67
W+NR A
Sbjct: 127 WINRLA 132
>sp|A3QRX8|DESI2_PIG Desumoylating isopeptidase 2 OS=Sus scrofa GN=DESI2 PE=2 SV=1
Length = 194
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 43/66 (65%)
Query: 2 YTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLPG 61
+ ++E++VLG T+F + +I+ EL +E+ GN+Y L+ +NCNHF + L ++P
Sbjct: 67 FKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPR 126
Query: 62 WVNRFA 67
W+NR A
Sbjct: 127 WINRLA 132
>sp|Q8X1T0|HAG1_SCHPO DeSI-like protein hag1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=hag1 PE=1 SV=1
Length = 201
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%)
Query: 4 YRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLPGWV 63
+R SI L V++IL LS+E+ G SY LL RNCNHF + L +P ++
Sbjct: 66 WRCSIALPNCTLPKPDVDRILIRLSQEFTGLSYSLLERNCNHFTNAAAIELTGSPIPSFL 125
Query: 64 NRFANAGDA 72
NR + G A
Sbjct: 126 NRISRIGLA 134
>sp|A5N1D3|THIM_CLOK5 Hydroxyethylthiazole kinase OS=Clostridium kluyveri (strain ATCC
8527 / DSM 555 / NCIMB 10680) GN=thiM PE=3 SV=1
Length = 269
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 100 RFLAGVASNVNGTNGANGTNGAVPDSPSNSNRGTPRFQGTWFKNLITTGAKPSSSSDIEN 159
+FLAG SNV G + GA+ S S + T K+ I G +S+ IEN
Sbjct: 131 KFLAGETSNVKGVDSLEDGEGALECSRILSEKYNCVVAATGKKDFIVQG---KNSAIIEN 187
Query: 160 HEEELSSATGS 170
E L++ TG+
Sbjct: 188 GTEMLTNITGA 198
>sp|B9E564|THIM_CLOK1 Hydroxyethylthiazole kinase OS=Clostridium kluyveri (strain NBRC
12016) GN=thiM PE=3 SV=1
Length = 269
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 100 RFLAGVASNVNGTNGANGTNGAVPDSPSNSNRGTPRFQGTWFKNLITTGAKPSSSSDIEN 159
+FLAG SNV G + GA+ S S + T K+ I G +S+ IEN
Sbjct: 131 KFLAGETSNVKGVDSLEDGEGALECSRILSEKYNCVVAATGKKDFIVQG---KNSAIIEN 187
Query: 160 HEEELSSATGS 170
E L++ TG+
Sbjct: 188 GTEMLTNITGA 198
>sp|Q1GX86|PRMA_METFK Ribosomal protein L11 methyltransferase OS=Methylobacillus
flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=prmA
PE=3 SV=1
Length = 295
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 119 NGAVPD-SPSNSNRGTPRFQGTWFKNLITTGAKPSSSSDIENHEEELSSATGSRSRRSST 177
N PD P G P G W +N++T A S+D+++ EELS+ATG R ST
Sbjct: 36 NAETPDEQPIFGEPGDPP-PGIWQQNVVT--ALLDESADLDSLLEELSAATGITDFRYST 92
Query: 178 AT 179
T
Sbjct: 93 ET 94
>sp|Q54QD1|PKS23_DICDI Probable polyketide synthase 23 OS=Dictyostelium discoideum
GN=pks23 PE=3 SV=1
Length = 2499
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 63/162 (38%), Gaps = 30/162 (18%)
Query: 6 ESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLPGWVNR 65
ESIV GK+N+S+ IL +S ++ G++ G N
Sbjct: 189 ESIVNGKSNYSVVAGCNILLNPYITRSFHSINITGKS------------------GRCNS 230
Query: 66 FANAGDAAMEVAGTTALRLRQAKTEIVSASKVAYRFLAGVASNVNGTNGANGTNGAVPDS 125
F + D + G L L++ I ++ Y + G +SNV+GT TN P
Sbjct: 231 FDESADGFVRSEGVVVLILKRLSLAIQDGDQI-YCVMKGSSSNVDGT--FKKTNFFAPSK 287
Query: 126 PSN---------SNRGTPRFQGTWFKNLITTGAKPSSSSDIE 158
+ S+ G ++Q F L +TG + ++E
Sbjct: 288 NAQSTNIKNAFLSSNGAMKYQDIDFFELHSTGTQVGDPIEVE 329
>sp|Q3Z8Z5|ATPD_DEHE1 ATP synthase subunit delta OS=Dehalococcoides ethenogenes (strain
195) GN=atpH PE=3 SV=1
Length = 180
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 145 ITTGAKPSSSSDIENHEEELSSATGSR 171
I T AKPSS +DIE ++LS TG +
Sbjct: 110 IVTTAKPSSEADIEIIRQQLSKITGKK 136
>sp|Q5ZHN9|PGPS1_CHICK CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase,
mitochondrial OS=Gallus gallus GN=PGS1 PE=2 SV=1
Length = 557
Score = 31.2 bits (69), Expect = 3.9, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 79 TTALRLRQAKTEIVSASKVAYRFLAGVASNVNGTNGANGTNGAVPDS 125
T L QA +++ ++ YR L + VNG GA G GA+P +
Sbjct: 387 TGYFNLTQAYMDLILGTRAEYRILLA-SPEVNGFFGAKGVAGAIPSA 432
>sp|Q54QD3|PKS22_DICDI Probable polyketide synthase 22 OS=Dictyostelium discoideum
GN=pks22 PE=3 SV=1
Length = 2499
Score = 31.2 bits (69), Expect = 4.0, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 63/162 (38%), Gaps = 30/162 (18%)
Query: 6 ESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLPGWVNR 65
ESIV GK+N+S+ IL +S ++ G++ G N
Sbjct: 189 ESIVNGKSNYSVVAGCNILLNPYITRSFHSINITGKS------------------GRCNS 230
Query: 66 FANAGDAAMEVAGTTALRLRQAKTEIVSASKVAYRFLAGVASNVNGTNGANGTNGAVPDS 125
F + D + G L L++ I ++ Y + G +SNV+GT TN P
Sbjct: 231 FDESADGFVRSEGVVVLILKRLSLAIQDGDQI-YCVMKGSSSNVDGT--FKKTNFFAPSK 287
Query: 126 PSN---------SNRGTPRFQGTWFKNLITTGAKPSSSSDIE 158
+ S+ G ++Q F L +TG + ++E
Sbjct: 288 NAQSTNIKNAFLSSNGAMKYQDIDFFELHSTGTQVGDPIEVE 329
>sp|Q28ZA9|UNPG_DROPS Homeobox protein unplugged OS=Drosophila pseudoobscura
pseudoobscura GN=unpg PE=3 SV=1
Length = 491
Score = 30.0 bits (66), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 80 TALRLRQAKTEIVSASKVAY--RFLAGVASNVNGTNG-ANGTNGAVPDSPSNSNRGTPRF 136
T+L+L + + +I ++ A R AG+ S+ G NG A+GT VP P + NR R
Sbjct: 358 TSLKLSEVQVKIWFQNRRAKWKRVKAGLTSHGLGRNGSASGTKIVVP-IPVHVNRFAVRS 416
Query: 137 QGTWFKNLITTGAKP 151
Q + + +G KP
Sbjct: 417 QHQQLEKMCLSGPKP 431
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.127 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,882,578
Number of Sequences: 539616
Number of extensions: 2798392
Number of successful extensions: 7429
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 7248
Number of HSP's gapped (non-prelim): 229
length of query: 183
length of database: 191,569,459
effective HSP length: 110
effective length of query: 73
effective length of database: 132,211,699
effective search space: 9651454027
effective search space used: 9651454027
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)