Query 030103
Match_columns 183
No_of_seqs 125 out of 418
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 08:34:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030103.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030103hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0324 Uncharacterized conser 100.0 6.9E-31 1.5E-35 223.0 9.5 140 1-145 71-210 (214)
2 PF05903 Peptidase_C97: PPPDE 99.9 1.2E-25 2.5E-30 179.2 4.1 71 2-72 69-139 (151)
3 PF04970 LRAT: Lecithin retino 92.7 0.045 9.7E-07 41.7 0.7 18 34-51 103-120 (125)
4 PF09601 DUF2459: Protein of u 80.6 2.2 4.8E-05 35.3 3.7 44 13-57 96-162 (173)
5 PF05608 DUF778: Protein of un 71.9 3.4 7.5E-05 33.6 2.6 41 16-56 75-115 (136)
6 PF13387 DUF4105: Domain of un 69.1 5.7 0.00012 32.1 3.3 50 12-61 102-155 (176)
7 PF11328 DUF3130: Protein of u 55.1 39 0.00085 26.1 5.4 64 10-86 1-73 (90)
8 cd02998 PDI_a_ERp38 PDIa famil 52.9 5.5 0.00012 27.5 0.4 46 19-64 35-81 (105)
9 PF00767 Poty_coat: Potyvirus 48.9 13 0.00029 32.7 2.3 73 43-115 131-216 (237)
10 PF04412 DUF521: Protein of un 43.3 12 0.00027 35.0 1.3 52 12-64 267-326 (400)
11 PF12419 DUF3670: SNF2 Helicas 39.7 28 0.0006 27.5 2.6 27 2-28 71-97 (141)
12 PF04046 PSP: PSP; InterPro: 38.3 30 0.00064 23.8 2.2 25 46-70 5-31 (48)
13 PF15643 Tox-PL-2: Papain fold 33.8 21 0.00045 28.1 1.0 46 16-68 1-46 (100)
14 TIGR01514 NAPRTase nicotinate 33.4 15 0.00033 34.4 0.2 42 18-59 46-88 (394)
15 smart00581 PSP proline-rich do 32.5 42 0.00092 23.6 2.3 25 46-70 9-35 (54)
16 cd03003 PDI_a_ERdj5_N PDIa fam 29.3 56 0.0012 23.0 2.6 43 18-62 34-76 (101)
17 cd02947 TRX_family TRX family; 27.2 35 0.00075 22.0 1.1 43 18-63 26-68 (93)
18 cd03004 PDI_a_ERdj5_C PDIa fam 25.7 81 0.0018 22.1 2.8 43 19-63 36-78 (104)
19 cd02961 PDI_a_family Protein D 23.9 1E+02 0.0022 20.3 2.9 41 20-61 33-74 (101)
20 PLN02362 hexokinase 23.2 25 0.00054 34.0 -0.3 50 18-68 35-90 (509)
21 cd02956 ybbN ybbN protein fami 22.9 82 0.0018 21.7 2.4 43 19-63 29-71 (96)
22 PRK13907 rnhA ribonuclease H; 22.5 93 0.002 23.1 2.8 28 27-54 97-124 (128)
23 PRK09381 trxA thioredoxin; Pro 22.1 51 0.0011 23.4 1.3 43 19-63 38-80 (109)
24 PRK13848 conjugal transfer pro 21.9 65 0.0014 25.3 1.8 26 10-35 39-64 (98)
25 PF10138 vWA-TerF-like: vWA fo 21.8 71 0.0015 27.5 2.2 24 41-65 161-193 (200)
26 PF03246 Pneumo_ncap: Pneumovi 21.2 88 0.0019 29.6 2.8 32 19-52 286-326 (391)
27 PF11931 DUF3449: Domain of un 21.2 32 0.00069 29.7 0.0 41 56-96 85-126 (196)
28 PF07820 TraC: TraC-like prote 21.1 64 0.0014 25.0 1.6 25 10-34 38-62 (92)
29 TIGR03544 DivI1A_domain DivIVA 21.1 91 0.002 19.2 2.1 19 13-31 16-34 (34)
30 cd01401 PncB_like Nicotinate p 21.0 27 0.00059 32.6 -0.5 41 17-57 43-84 (377)
31 PRK00098 GTPase RsgA; Reviewed 20.8 1.4E+02 0.003 26.1 3.9 61 10-76 229-292 (298)
32 PF13456 RVT_3: Reverse transc 20.5 1.4E+02 0.003 19.8 3.1 33 21-53 51-83 (87)
33 PF11022 DUF2611: Protein of u 20.3 71 0.0015 23.5 1.7 21 54-74 7-27 (71)
No 1
>KOG0324 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=6.9e-31 Score=223.04 Aligned_cols=140 Identities=36% Similarity=0.507 Sum_probs=115.2
Q ss_pred CceeEEEEEcCCccCCHHHHHHHHHHhhccCCCCcccccccccchHHHHHHHhcCCCCCChHHHHHHhhhhhhhhccchh
Q 030103 1 MYTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLPGWVNRFANAGDAAMEVAGTT 80 (183)
Q Consensus 1 m~~yREsI~LG~T~lt~~ev~eiL~~Ls~ew~g~tYdLL~rNCNHFSdalc~~L~gk~IP~wINRLA~iG~~~~~~~~nt 80 (183)
+|+||++|.||.|++++++|++||++|+++|+|++||||.||||||||++|.+|+|++||.||||||++|..+.+ |.
T Consensus 71 ~f~fr~sI~lG~Td~~~~~v~~~le~L~~ey~G~~YhL~~kNCNHFsn~la~~Ltgk~IP~winrLa~~~~~~~~---~~ 147 (214)
T KOG0324|consen 71 EFTFRKSILLGSTDLTEDDVRRILEELSEEYRGNSYHLLTKNCNHFSNELALQLTGKKIPSWVNRLARAGLCSLC---NC 147 (214)
T ss_pred CCceeEEEEecCCCCCHHHHHHHHHHHHhhcCCceehhhhhccchhHHHHHHHHcCCCccHHHHHHHHHhhhhHH---hh
Confidence 589999999999999999999999999999999999999999999999999999999999999999999987443 77
Q ss_pred HHHhhhhhhhhhccccceeeeeecccccccCCCCCCCCCCCCCCCCCCCCCCCCceehhhhHHHh
Q 030103 81 ALRLRQAKTEIVSASKVAYRFLAGVASNVNGTNGANGTNGAVPDSPSNSNRGTPRFQGTWFKNLI 145 (183)
Q Consensus 81 a~~lrqak~~~~~a~~~A~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (183)
...+.+..+.+..+.+++.++.-+..++.+..... +..-.+--++.++++.++.|+.|.+...
T Consensus 148 ~~p~~~~~t~~~~~~~~~~~~~~~~~~~~~~~s~~--s~~~~~~~~s~s~~~~~~~~~~~~~~~~ 210 (214)
T KOG0324|consen 148 LLPMLQNLTPVVLASSVVERFDEEENSKKKLASSG--SPSRSAPLLSASDSGLILLSGPSLKRER 210 (214)
T ss_pred cchhhhcCCccccccccccccCccccccccccccC--CCcccCCCCCcCcCccccccCccccccc
Confidence 77788888888888888888887765554333211 1111222336677788999999987654
No 2
>PF05903 Peptidase_C97: PPPDE putative peptidase domain; InterPro: IPR008580 This domain consists of the N-terminal portion of several eukaryotic sequences. The function of this domain is unknown.; PDB: 2WP7_A 3EBQ_A.
Probab=99.91 E-value=1.2e-25 Score=179.22 Aligned_cols=71 Identities=49% Similarity=0.809 Sum_probs=58.5
Q ss_pred ceeEEEEEcCCccCCHHHHHHHHHHhhccCCCCcccccccccchHHHHHHHhcCCCCCChHHHHHHhhhhh
Q 030103 2 YTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLPGWVNRFANAGDA 72 (183)
Q Consensus 2 ~~yREsI~LG~T~lt~~ev~eiL~~Ls~ew~g~tYdLL~rNCNHFSdalc~~L~gk~IP~wINRLA~iG~~ 72 (183)
++|+++|+||+|.+++++|+++|++|+++|.+++||||.||||||||+||++|+|++||+||+|+|+++..
T Consensus 69 ~~~~~~i~lG~T~~~~~~~~~~l~~l~~~~~~~~Y~Ll~~NCNhFs~~l~~~L~g~~iP~~i~~~a~~~~~ 139 (151)
T PF05903_consen 69 GTPRESIELGETTLSEEEFEEILRSLSREFTGDSYHLLNRNCNHFSDALCQFLTGKPIPSWINRLARIALS 139 (151)
T ss_dssp -S-SEEEEEEEE---HHHHHHHHHHHHTT-SGGG-BTTTBSHHHHHHHHHHHHHS----HHHHTHHHHHHT
T ss_pred cceEEEEeCCCccCCHHHHHHHHHHHHhhccCCcchhhhhhhhHHHHHHHHHhCCCCCCHHHHhhhHHhcc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999874
No 3
>PF04970 LRAT: Lecithin retinol acyltransferase; InterPro: IPR007053 This entry represents a conserved sequence region found in proteins from viruses, bacteria and eukaryotes. It contains a well-conserved NCEHF motif, though its function in these proteins is unknown.; PDB: 2KYT_A 4DOT_A 4FA0_A.
Probab=92.66 E-value=0.045 Score=41.67 Aligned_cols=18 Identities=39% Similarity=0.604 Sum_probs=12.2
Q ss_pred CcccccccccchHHHHHH
Q 030103 34 NSYDLLGRNCNHFCDEFC 51 (183)
Q Consensus 34 ~tYdLL~rNCNHFSdalc 51 (183)
..||||.+||=||+....
T Consensus 103 ~~Y~l~~nNCEhFa~~c~ 120 (125)
T PF04970_consen 103 FEYNLLFNNCEHFATWCR 120 (125)
T ss_dssp ESS---HHHHHHHHHHHH
T ss_pred CccCCCcCCHHHHHHHHH
Confidence 389999999999997543
No 4
>PF09601 DUF2459: Protein of unknown function (DUF2459); InterPro: IPR011727 This conserved hypothetical protein of unknown function is predominantly found in proteobacteria. Its function is unknown and its genome context is not well-conserved. It is found amid urease genes in at least one species.
Probab=80.60 E-value=2.2 Score=35.33 Aligned_cols=44 Identities=16% Similarity=0.395 Sum_probs=34.9
Q ss_pred ccCCHHHHHHHHHHhhccCCCC-----------------------cccccccccchHHHHHHHhcCCC
Q 030103 13 TNFSIFKVNQILRELSREWPGN-----------------------SYDLLGRNCNHFCDEFCDRLGVP 57 (183)
Q Consensus 13 T~lt~~ev~eiL~~Ls~ew~g~-----------------------tYdLL~rNCNHFSdalc~~L~gk 57 (183)
..++++++.++++.|+..|.-+ .|+|+ ++|||-+++..+..+.+
T Consensus 96 i~ls~~~y~~L~~~I~~sf~~~~~g~~~~i~~~y~~~d~Fy~A~G~Y~l~-~TCNtWta~~L~aaG~~ 162 (173)
T PF09601_consen 96 IRLSEAQYRRLVAFIRASFQRDADGRPIPIGPGYGPDDAFYEAKGRYSLF-NTCNTWTARALKAAGLP 162 (173)
T ss_pred EEcCHHHHHHHHHHHHHHhccCCCCCeEEeccccCCCCeeEeeccceEee-cCcHHHHHHHHHHcCCC
Confidence 3789999999999988766543 46655 79999999999887654
No 5
>PF05608 DUF778: Protein of unknown function (DUF778); InterPro: IPR008496 This family consists of several eukaryotic proteins of unknown function.
Probab=71.93 E-value=3.4 Score=33.59 Aligned_cols=41 Identities=20% Similarity=0.394 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHhhccCCCCcccccccccchHHHHHHHhcCC
Q 030103 16 SIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGV 56 (183)
Q Consensus 16 t~~ev~eiL~~Ls~ew~g~tYdLL~rNCNHFSdalc~~L~g 56 (183)
+....++.|++-.++|....|+|+..||=+|.-.....|.=
T Consensus 75 ~~~~wD~Av~~a~~~y~~r~yNlf~~NCHSfVA~aLN~m~Y 115 (136)
T PF05608_consen 75 GAESWDDAVQKASEEYKHRMYNLFTDNCHSFVANALNRMRY 115 (136)
T ss_pred cHHHHHHHHHHHHHHHhhCceeeeccCcHHHHHHHHHhccC
Confidence 56677888888889999999999999999999888887753
No 6
>PF13387 DUF4105: Domain of unknown function (DUF4105)
Probab=69.08 E-value=5.7 Score=32.13 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=38.9
Q ss_pred CccCCHHHHHHHHHHhhccC----CCCcccccccccchHHHHHHHhcCCCCCCh
Q 030103 12 KTNFSIFKVNQILRELSREW----PGNSYDLLGRNCNHFCDEFCDRLGVPKLPG 61 (183)
Q Consensus 12 ~T~lt~~ev~eiL~~Ls~ew----~g~tYdLL~rNCNHFSdalc~~L~gk~IP~ 61 (183)
...+++++.+.++..|.+.- .+-.||.|..||=.-.-++.....++.+|-
T Consensus 102 ~LnLs~ee~~~l~~~l~e~~~~~~~~~~Y~f~~~NCat~i~~~l~~~~~~~l~~ 155 (176)
T PF13387_consen 102 PLNLSPEEKQRLFRHLWENANPENRPYRYNFFTDNCATRIRDLLDKARPGSLPL 155 (176)
T ss_pred EeeCCHHHHHHHHHHHHHhccccccceeehhhhcchHHHHHHHHHHHcCCCeec
Confidence 35789999999998776432 455999999999999988888887764443
No 7
>PF11328 DUF3130: Protein of unknown function (DUF3130; InterPro: IPR021477 This bacterial family of proteins has no known function.
Probab=55.11 E-value=39 Score=26.15 Aligned_cols=64 Identities=16% Similarity=0.200 Sum_probs=43.7
Q ss_pred cCCccCCHHHHHHHHHHhhccCCCCccccccc---------ccchHHHHHHHhcCCCCCChHHHHHHhhhhhhhhccchh
Q 030103 10 LGKTNFSIFKVNQILRELSREWPGNSYDLLGR---------NCNHFCDEFCDRLGVPKLPGWVNRFANAGDAAMEVAGTT 80 (183)
Q Consensus 10 LG~T~lt~~ev~eiL~~Ls~ew~g~tYdLL~r---------NCNHFSdalc~~L~gk~IP~wINRLA~iG~~~~~~~~nt 80 (183)
|+++.+.+..|......|...=.+-.|=-|+. --|||+.++.. |-.+.+.|..+.+.-
T Consensus 1 M~EIkv~e~tf~~~at~L~s~~~~~~y~plK~gnMaysraNsin~~r~Al~d-------------Lv~~Ve~fq~v~~~D 67 (90)
T PF11328_consen 1 MSEIKVNEETFQKHATKLKSKASGVEYLPLKNGNMAYSRANSINQLRTALID-------------LVDVVENFQQVVKKD 67 (90)
T ss_pred CCceehhHHHHHHHHHHHHcccCCcccccccCCCeehhhhhhHHHHHHHHHH-------------HHHHHHHHHHHHHHH
Confidence 67889999999999999986555545544433 35777777765 445555556666666
Q ss_pred HHHhhh
Q 030103 81 ALRLRQ 86 (183)
Q Consensus 81 a~~lrq 86 (183)
|.||+|
T Consensus 68 A~Rlkk 73 (90)
T PF11328_consen 68 ASRLKK 73 (90)
T ss_pred HHHHHH
Confidence 666654
No 8
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=52.89 E-value=5.5 Score=27.48 Aligned_cols=46 Identities=9% Similarity=0.201 Sum_probs=35.0
Q ss_pred HHHHHHHHhhccCCC-CcccccccccchHHHHHHHhcCCCCCChHHH
Q 030103 19 KVNQILRELSREWPG-NSYDLLGRNCNHFCDEFCDRLGVPKLPGWVN 64 (183)
Q Consensus 19 ev~eiL~~Ls~ew~g-~tYdLL~rNCNHFSdalc~~L~gk~IP~wIN 64 (183)
++...++++...+.. ..+.++.=||++...++|+.+....+|..+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 35 NLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred hhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 455667777777663 4578888899997788999999999998663
No 9
>PF00767 Poty_coat: Potyvirus coat protein; InterPro: IPR001592 This protease is found in genome polyproteins of potyviruses. The genome polyprotein contains: N-terminal protein (P1), helper component protease (3.4.22 from EC, HC-PRO), protein P3, 6KD protein (6K1), cytoplasmic inclusion protein (CI), 6KD protein 2 (6K2), genome-linked protein (VPG), nuclear inclusion protein A (3.4.22 from EC), nuclear inclusion protein B (2.7.7.48 from EC) and coat protein (CP). The coat protein is at the C terminus of the polyprotein.; GO: 0019028 viral capsid
Probab=48.89 E-value=13 Score=32.70 Aligned_cols=73 Identities=23% Similarity=0.274 Sum_probs=51.7
Q ss_pred cchHHHHHHHhcC-----CCCCChHHH-------HHHhhhhhhhhccchhHHHhhhhhhhh-hccccceeeeeecccccc
Q 030103 43 CNHFCDEFCDRLG-----VPKLPGWVN-------RFANAGDAAMEVAGTTALRLRQAKTEI-VSASKVAYRFLAGVASNV 109 (183)
Q Consensus 43 CNHFSdalc~~L~-----gk~IP~wIN-------RLA~iG~~~~~~~~nta~~lrqak~~~-~~a~~~A~~f~~~~~~~~ 109 (183)
==||+|+....+. ..-+|.|=. .||+++--|.++..-+-.+.|+|...+ +.|.++...-|||..-++
T Consensus 131 M~hFSd~aeayie~rn~~~~ymPryg~~rnl~d~sla~yaFDFy~~ts~tp~rarEa~~QmKaAAl~~~~~rlfglDg~v 210 (237)
T PF00767_consen 131 MRHFSDAAEAYIEMRNSEEPYMPRYGLQRNLTDMSLARYAFDFYEVTSRTPARAREAHNQMKAAALRGTKNRLFGLDGNV 210 (237)
T ss_pred HHHhhHHHHHHHHHhcccCCchhhhhhhcCCccccccceeeeEeecCCCCCHHHHHHHHHHHHHhhccccCceeeecCCC
Confidence 3499988777763 456888753 245666556677766766666665554 667889999999988888
Q ss_pred cCCCCC
Q 030103 110 NGTNGA 115 (183)
Q Consensus 110 ~~~~~~ 115 (183)
.+..||
T Consensus 211 ~~~~ed 216 (237)
T PF00767_consen 211 GTSEED 216 (237)
T ss_pred CCCccC
Confidence 777665
No 10
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=43.32 E-value=12 Score=35.00 Aligned_cols=52 Identities=21% Similarity=0.442 Sum_probs=40.6
Q ss_pred CccCCHHHHHHHHHHhhccCCCCcccccccccchHH----HHHHHhcCCCC----CChHHH
Q 030103 12 KTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFC----DEFCDRLGVPK----LPGWVN 64 (183)
Q Consensus 12 ~T~lt~~ev~eiL~~Ls~ew~g~tYdLL~rNCNHFS----dalc~~L~gk~----IP~wIN 64 (183)
+..++.+++.++.++|. .-..+.-||+.==|+||+ .++++.|-|++ +|-||.
T Consensus 267 ~i~i~~~dl~~~~~~l~-~~~~~~~D~V~lGcPH~S~~El~~ia~ll~gr~~~~~~~~~i~ 326 (400)
T PF04412_consen 267 RITITDADLEEVYEELN-TAGDEKVDLVALGCPHLSLEELREIAELLEGRKVHPNVPLWIT 326 (400)
T ss_pred EEEeCHHHHHHHHHHhc-cCCCCCCCEEEECCCCCCHHHHHHHHHHHhCCCCCCCceEEEE
Confidence 34678999999999997 667778899999999999 55666777765 555554
No 11
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=39.74 E-value=28 Score=27.53 Aligned_cols=27 Identities=15% Similarity=0.278 Sum_probs=23.6
Q ss_pred ceeEEEEEcCCccCCHHHHHHHHHHhh
Q 030103 2 YTYRESIVLGKTNFSIFKVNQILRELS 28 (183)
Q Consensus 2 ~~yREsI~LG~T~lt~~ev~eiL~~Ls 28 (183)
..|+=.+.||...+|++||.++++.=+
T Consensus 71 ~~f~W~lalGd~~Ls~eEf~~L~~~~~ 97 (141)
T PF12419_consen 71 LDFDWELALGDEELSEEEFEQLVEQKR 97 (141)
T ss_pred hcceEEEEECCEECCHHHHHHHHHcCC
Confidence 468889999999999999999998644
No 12
>PF04046 PSP: PSP; InterPro: IPR006568 PSP is a proline-rich domain of unknown function found in spliceosome associated proteins.
Probab=38.27 E-value=30 Score=23.83 Aligned_cols=25 Identities=32% Similarity=0.671 Sum_probs=20.6
Q ss_pred HHHHHHHhcC--CCCCChHHHHHHhhh
Q 030103 46 FCDEFCDRLG--VPKLPGWVNRFANAG 70 (183)
Q Consensus 46 FSdalc~~L~--gk~IP~wINRLA~iG 70 (183)
.+++|-++|+ ...+|.||.++.++|
T Consensus 5 lS~~LR~ALg~~~~~~PPwl~~M~~~G 31 (48)
T PF04046_consen 5 LSDELREALGMQENDPPPWLYRMRRLG 31 (48)
T ss_pred cCHHHHHHcCCCCCCCChHHHHHHhcC
Confidence 4678888886 467999999999987
No 13
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=33.77 E-value=21 Score=28.08 Aligned_cols=46 Identities=15% Similarity=0.279 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHhhccCCCCcccccccccchHHHHHHHhcCCCCCChHHHHHHh
Q 030103 16 SIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLPGWVNRFAN 68 (183)
Q Consensus 16 t~~ev~eiL~~Ls~ew~g~tYdLL~rNCNHFSdalc~~L~gk~IP~wINRLA~ 68 (183)
++.++.+.+..+..+|. + --|=-|++++.++|..++||.-+.+|-.
T Consensus 1 ~~~~~~Q~I~~I~~~f~-----~--~qC~~cA~Al~~~L~~~gI~Gk~i~l~T 46 (100)
T PF15643_consen 1 NPAEVRQQIGKIASRFK-----I--FQCVECASALKQFLKQAGIPGKIIRLYT 46 (100)
T ss_pred CHHHHHHHHHHhhcccC-----c--eehHHHHHHHHHHHHHCCCCceEEEEEe
Confidence 35788888999988874 2 3699999999999999999998887743
No 14
>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase. This model represents nicotinate phosphoribosyltransferase, the first enzyme in the salvage pathway of NAD biosynthesis from nicontinate (niacin). Members are primary proteobacterial but also include yeasts and Methanosarcina acetivorans. A related family, apparently non-overlapping in species distribution, is TIGR01513. Members of that family differ in substantially in sequence and have a long C-terminal extension missing from this family, but are proposed also to act as nicotinate phosphoribosyltransferase (see model TIGR01513).
Probab=33.40 E-value=15 Score=34.44 Aligned_cols=42 Identities=10% Similarity=0.195 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhc-cCCCCcccccccccchHHHHHHHhcCCCCC
Q 030103 18 FKVNQILRELSR-EWPGNSYDLLGRNCNHFCDEFCDRLGVPKL 59 (183)
Q Consensus 18 ~ev~eiL~~Ls~-ew~g~tYdLL~rNCNHFSdalc~~L~gk~I 59 (183)
.++++.|+-|.. .|+.+.++-|.++|++|..+|..+|-+=+.
T Consensus 46 ~gl~~~i~~l~~l~ft~eel~yL~~~~~~~~~~fl~~L~~frf 88 (394)
T TIGR01514 46 EALREEISALGNLRFTDDEIEYLKQELPYLKSDYIDYLRNFRF 88 (394)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHhccCCCCHHHHHHHHhCCC
Confidence 688888888885 899999999999999999999999976444
No 15
>smart00581 PSP proline-rich domain in spliceosome associated proteins.
Probab=32.51 E-value=42 Score=23.64 Aligned_cols=25 Identities=32% Similarity=0.663 Sum_probs=20.5
Q ss_pred HHHHHHHhcC--CCCCChHHHHHHhhh
Q 030103 46 FCDEFCDRLG--VPKLPGWVNRFANAG 70 (183)
Q Consensus 46 FSdalc~~L~--gk~IP~wINRLA~iG 70 (183)
.+++|-++|+ -..+|.||.++.++|
T Consensus 9 lS~~LR~ALG~~~~~pPPWl~~Mq~~G 35 (54)
T smart00581 9 ISDELREALGLPPGQPPPWLYRMRRLG 35 (54)
T ss_pred CCHHHHHHcCCCCCCCChHHHHHHHHC
Confidence 3688888886 357999999999987
No 16
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=29.33 E-value=56 Score=22.97 Aligned_cols=43 Identities=23% Similarity=0.419 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhccCCCCcccccccccchHHHHHHHhcCCCCCChH
Q 030103 18 FKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLPGW 62 (183)
Q Consensus 18 ~ev~eiL~~Ls~ew~g~tYdLL~rNCNHFSdalc~~L~gk~IP~w 62 (183)
.++...++++.++|.+. ..+..=||... .++|+.+..+.+|..
T Consensus 34 ~~~~p~~~~~a~~~~~~-~~~~~vd~~~~-~~~~~~~~v~~~Pt~ 76 (101)
T cd03003 34 HDLAPTWREFAKEMDGV-IRIGAVNCGDD-RMLCRSQGVNSYPSL 76 (101)
T ss_pred HHhHHHHHHHHHHhcCc-eEEEEEeCCcc-HHHHHHcCCCccCEE
Confidence 34455666666676653 66777888775 567888888888874
No 17
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=27.21 E-value=35 Score=22.01 Aligned_cols=43 Identities=19% Similarity=0.387 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhccCCCCcccccccccchHHHHHHHhcCCCCCChHH
Q 030103 18 FKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLPGWV 63 (183)
Q Consensus 18 ~ev~eiL~~Ls~ew~g~tYdLL~rNCNHFSdalc~~L~gk~IP~wI 63 (183)
.++...++++..+ .....++.=||++ ..+++..+....+|.++
T Consensus 26 ~~~~~~~~~~~~~--~~~~~~~~i~~~~-~~~~~~~~~v~~~P~~~ 68 (93)
T cd02947 26 KAIAPVLEELAEE--YPKVKFVKVDVDE-NPELAEEYGVRSIPTFL 68 (93)
T ss_pred HHhhHHHHHHHHH--CCCceEEEEECCC-ChhHHHhcCcccccEEE
Confidence 3555666766666 5567888888887 56677778888888655
No 18
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=25.66 E-value=81 Score=22.12 Aligned_cols=43 Identities=16% Similarity=0.414 Sum_probs=29.3
Q ss_pred HHHHHHHHhhccCCCCcccccccccchHHHHHHHhcCCCCCChHH
Q 030103 19 KVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLPGWV 63 (183)
Q Consensus 19 ev~eiL~~Ls~ew~g~tYdLL~rNCNHFSdalc~~L~gk~IP~wI 63 (183)
.+...+++|..+|.+ ...+..=||... .++|+.+..+.+|..+
T Consensus 36 ~~~p~~~~~~~~~~~-~~~~~~vd~~~~-~~~~~~~~i~~~Pt~~ 78 (104)
T cd03004 36 ALLPELRKAARALKG-KVKVGSVDCQKY-ESLCQQANIRAYPTIR 78 (104)
T ss_pred HHHHHHHHHHHHhcC-CcEEEEEECCch-HHHHHHcCCCcccEEE
Confidence 345566666666643 466778888876 5678888888888743
No 19
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=23.85 E-value=1e+02 Score=20.31 Aligned_cols=41 Identities=17% Similarity=0.406 Sum_probs=26.2
Q ss_pred HHHHHHHhhccCC-CCcccccccccchHHHHHHHhcCCCCCCh
Q 030103 20 VNQILRELSREWP-GNSYDLLGRNCNHFCDEFCDRLGVPKLPG 61 (183)
Q Consensus 20 v~eiL~~Ls~ew~-g~tYdLL~rNCNHFSdalc~~L~gk~IP~ 61 (183)
+...++++...+. .+.+.+..=||-. ..++|+.+....+|.
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~i~~~Pt 74 (101)
T cd02961 33 LAPEYEKLAKELKGDGKVVVAKVDCTA-NNDLCSEYGVRGYPT 74 (101)
T ss_pred hhHHHHHHHHHhccCCceEEEEeeccc-hHHHHHhCCCCCCCE
Confidence 3344455555553 5566777777766 567777777777776
No 20
>PLN02362 hexokinase
Probab=23.17 E-value=25 Score=33.98 Aligned_cols=50 Identities=18% Similarity=0.190 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhccCCCCcccccccccchHHHHHHHhcCC------CCCChHHHHHHh
Q 030103 18 FKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGV------PKLPGWVNRFAN 68 (183)
Q Consensus 18 ~ev~eiL~~Ls~ew~g~tYdLL~rNCNHFSdalc~~L~g------k~IP~wINRLA~ 68 (183)
.....+|+++.++|..+... |.+-..||..++-.-|.. +.+|.||.++|.
T Consensus 35 ~~~~~~l~~~~~~f~~~~~~-L~~v~~~f~~em~~GL~~~~~s~l~MlPTyv~~lPt 90 (509)
T PLN02362 35 RRVVGVLKELEEACETPVGR-LRQVVDAMAVEMHAGLASEGGSKLKMLLTFVDDLPT 90 (509)
T ss_pred hHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHHHHHhhccCCCCCCceecCccCCCCC
Confidence 34677899999999887776 688999999999999974 689999998875
No 21
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=22.93 E-value=82 Score=21.67 Aligned_cols=43 Identities=26% Similarity=0.515 Sum_probs=33.0
Q ss_pred HHHHHHHHhhccCCCCcccccccccchHHHHHHHhcCCCCCChHH
Q 030103 19 KVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLPGWV 63 (183)
Q Consensus 19 ev~eiL~~Ls~ew~g~tYdLL~rNCNHFSdalc~~L~gk~IP~wI 63 (183)
.+...+.++...|.+ .+.++.=||.+. .++++.+....+|..|
T Consensus 29 ~~~~~~~~~~~~~~~-~~~~~~vd~~~~-~~l~~~~~i~~~Pt~~ 71 (96)
T cd02956 29 ELLPLLERLAEEYQG-QFVLAKVNCDAQ-PQIAQQFGVQALPTVY 71 (96)
T ss_pred HHHHHHHHHHHHhCC-cEEEEEEeccCC-HHHHHHcCCCCCCEEE
Confidence 344566777777765 488889999985 5789999999999865
No 22
>PRK13907 rnhA ribonuclease H; Provisional
Probab=22.47 E-value=93 Score=23.15 Aligned_cols=28 Identities=11% Similarity=0.113 Sum_probs=21.3
Q ss_pred hhccCCCCcccccccccchHHHHHHHhc
Q 030103 27 LSREWPGNSYDLLGRNCNHFCDEFCDRL 54 (183)
Q Consensus 27 Ls~ew~g~tYdLL~rNCNHFSdalc~~L 54 (183)
|.++|..-...-+.|.||..+|+|++.-
T Consensus 97 l~~~f~~~~~~~v~r~~N~~Ad~LA~~a 124 (128)
T PRK13907 97 YIKSFDLFFIKWIPSSQNKVADELARKA 124 (128)
T ss_pred HHhcCCceEEEEcCchhchhHHHHHHHH
Confidence 3567777776778888999999888753
No 23
>PRK09381 trxA thioredoxin; Provisional
Probab=22.12 E-value=51 Score=23.43 Aligned_cols=43 Identities=19% Similarity=0.370 Sum_probs=26.2
Q ss_pred HHHHHHHHhhccCCCCcccccccccchHHHHHHHhcCCCCCChHH
Q 030103 19 KVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLPGWV 63 (183)
Q Consensus 19 ev~eiL~~Ls~ew~g~tYdLL~rNCNHFSdalc~~L~gk~IP~wI 63 (183)
.+...+++|..+|.+ .+.+..=||.+. ..+++.+..+.+|..+
T Consensus 38 ~~~p~~~~l~~~~~~-~~~~~~vd~~~~-~~~~~~~~v~~~Pt~~ 80 (109)
T PRK09381 38 MIAPILDEIADEYQG-KLTVAKLNIDQN-PGTAPKYGIRGIPTLL 80 (109)
T ss_pred HHhHHHHHHHHHhCC-CcEEEEEECCCC-hhHHHhCCCCcCCEEE
Confidence 334455566666654 366677777765 4556667777777644
No 24
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=21.86 E-value=65 Score=25.30 Aligned_cols=26 Identities=19% Similarity=0.450 Sum_probs=23.1
Q ss_pred cCCccCCHHHHHHHHHHhhccCCCCc
Q 030103 10 LGKTNFSIFKVNQILRELSREWPGNS 35 (183)
Q Consensus 10 LG~T~lt~~ev~eiL~~Ls~ew~g~t 35 (183)
||..++++.++...+++|..+|++..
T Consensus 39 LgeieI~d~eL~~aFeeiAaRFR~g~ 64 (98)
T PRK13848 39 LGEIEIEEAELQAAFEELAKRFRGGK 64 (98)
T ss_pred ccccccCHHHHHHHHHHHHHHHhcCC
Confidence 68899999999999999999998753
No 25
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=21.81 E-value=71 Score=27.52 Aligned_cols=24 Identities=33% Similarity=0.778 Sum_probs=19.4
Q ss_pred cccchHH---------HHHHHhcCCCCCChHHHH
Q 030103 41 RNCNHFC---------DEFCDRLGVPKLPGWVNR 65 (183)
Q Consensus 41 rNCNHFS---------dalc~~L~gk~IP~wINR 65 (183)
-||+.|+ ++|-..|+ ...|.|+.-
T Consensus 161 DNa~Ff~~~d~~~lsD~eLy~~LL-~Efp~Wl~~ 193 (200)
T PF10138_consen 161 DNAGFFAIDDIDELSDEELYDRLL-AEFPDWLKA 193 (200)
T ss_pred CCcCeEecCCcccCCHHHHHHHHH-HHHHHHHHH
Confidence 3999997 56778887 899999953
No 26
>PF03246 Pneumo_ncap: Pneumovirus nucleocapsid protein; InterPro: IPR004930 This family is the Pneumovirus nucleocapsid protein. It is the most abundant protein in the virion and an important element in conferring helical symmetry on the nucleoprotein core as well as interacting with the M protein during virion formation.; GO: 0019013 viral nucleocapsid; PDB: 2YHQ_D 2YHP_P 2WJ8_T 2YHM_D.
Probab=21.19 E-value=88 Score=29.55 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=20.6
Q ss_pred HHHHHHHHhhccCCCCcccccc---------cccchHHHHHHH
Q 030103 19 KVNQILRELSREWPGNSYDLLG---------RNCNHFCDEFCD 52 (183)
Q Consensus 19 ev~eiL~~Ls~ew~g~tYdLL~---------rNCNHFSdalc~ 52 (183)
||.++++.|..+ ..=|||+. -||+||+..+..
T Consensus 286 evye~~~~~g~e--ag~~hi~~~pka~llslt~~p~f~svvlg 326 (391)
T PF03246_consen 286 EVYEYAQKLGGE--AGFYHIRNNPKASLLSLTQFPHFSSVVLG 326 (391)
T ss_dssp HHHHHHHHHGGG--GGGTTTTT-GGGGGG-STT-HHHHHHHHH
T ss_pred HHHHHHHHhCch--hhhHHHHhCchhhhhhhhcCCchhheeec
Confidence 566677777753 23466665 499999977655
No 27
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=21.17 E-value=32 Score=29.66 Aligned_cols=41 Identities=17% Similarity=0.305 Sum_probs=0.0
Q ss_pred CCCCChHHHHHHhhhhhhh-hccchhHHHhhhhhhhhhcccc
Q 030103 56 VPKLPGWVNRFANAGDAAM-EVAGTTALRLRQAKTEIVSASK 96 (183)
Q Consensus 56 gk~IP~wINRLA~iG~~~~-~~~~nta~~lrqak~~~~~a~~ 96 (183)
|++||-|+-.|--++.-+. ++-||..=.=|.|-..=.+..+
T Consensus 85 GkPIPyWLYKLhGL~~ey~CEICGN~~Y~GrkaFekHF~E~r 126 (196)
T PF11931_consen 85 GKPIPYWLYKLHGLGVEYKCEICGNQSYKGRKAFEKHFQEWR 126 (196)
T ss_dssp ------------------------------------------
T ss_pred CCcccHHHHHHhCCCCeeeeEeCCCcceecHHHHHHhcChhH
Confidence 8999999999999999999 4559987766666555554433
No 28
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=21.12 E-value=64 Score=25.03 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=22.7
Q ss_pred cCCccCCHHHHHHHHHHhhccCCCC
Q 030103 10 LGKTNFSIFKVNQILRELSREWPGN 34 (183)
Q Consensus 10 LG~T~lt~~ev~eiL~~Ls~ew~g~ 34 (183)
||..+++.+++..+++++..+|+.+
T Consensus 38 L~eieI~d~eL~~~FeeIa~RFrk~ 62 (92)
T PF07820_consen 38 LGEIEISDAELQAAFEEIAARFRKG 62 (92)
T ss_pred cccccCCHHHHHHHHHHHHHHHhcc
Confidence 6888999999999999999999875
No 29
>TIGR03544 DivI1A_domain DivIVA domain. This model describes a domain found in Bacillus subtilis cell division initiation protein DivIVA, and homologs, toward the N-terminus. It is also found as a repeated domain in certain other proteins, including family TIGR03543.
Probab=21.10 E-value=91 Score=19.20 Aligned_cols=19 Identities=11% Similarity=0.335 Sum_probs=16.0
Q ss_pred ccCCHHHHHHHHHHhhccC
Q 030103 13 TNFSIFKVNQILRELSREW 31 (183)
Q Consensus 13 T~lt~~ev~eiL~~Ls~ew 31 (183)
-.+.+.||+.+|+++..+|
T Consensus 16 rGY~~~eVD~fLd~v~~~~ 34 (34)
T TIGR03544 16 RGYDAAEVDAFLDRVADDL 34 (34)
T ss_pred CCCCHHHHHHHHHHHHHhC
Confidence 4789999999999988654
No 30
>cd01401 PncB_like Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria, archea and funghi.
Probab=20.96 E-value=27 Score=32.55 Aligned_cols=41 Identities=12% Similarity=0.201 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhc-cCCCCcccccccccchHHHHHHHhcCCC
Q 030103 17 IFKVNQILRELSR-EWPGNSYDLLGRNCNHFCDEFCDRLGVP 57 (183)
Q Consensus 17 ~~ev~eiL~~Ls~-ew~g~tYdLL~rNCNHFSdalc~~L~gk 57 (183)
..++++.|+.|.. +|..+..+-|.+.|..|.+++..+|..-
T Consensus 43 ~~gl~~~i~~l~~l~ft~~el~yL~~~~~~~~~~fl~~L~~f 84 (377)
T cd01401 43 AEALREQIDHLANLRFSEEELAYLRRSLPFLKPDYLDYLELF 84 (377)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHhccCCCCHHHHHHHhcC
Confidence 6788888888875 8999999999999999999999999653
No 31
>PRK00098 GTPase RsgA; Reviewed
Probab=20.84 E-value=1.4e+02 Score=26.06 Aligned_cols=61 Identities=15% Similarity=0.281 Sum_probs=43.3
Q ss_pred cCCccCCHHHHHHHHHHhhccCCCCcccccccccchHHHHHH---HhcCCCCCChHHHHHHhhhhhhhhc
Q 030103 10 LGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFC---DRLGVPKLPGWVNRFANAGDAAMEV 76 (183)
Q Consensus 10 LG~T~lt~~ev~eiL~~Ls~ew~g~tYdLL~rNCNHFSdalc---~~L~gk~IP~wINRLA~iG~~~~~~ 76 (183)
+|...++.+++..+..++.+.|....| +||.|..+-=| +.|--..||.+ |+.++-..+.++
T Consensus 229 ~~~~~~~~~~~~~~f~~~~~~~~~c~f----~~c~h~~ep~c~v~~a~~~g~i~~~--Ry~~y~~l~~e~ 292 (298)
T PRK00098 229 FGLHDLEAEELEHYFPEFRPLSGDCKF----RNCTHLHEPGCAVKAAVEEGEIAPS--RYESYLQILEEI 292 (298)
T ss_pred cCCCCCCHHHHHHHHHHHHHHhCCCCC----CCCcCCCCCCChHHHHHHcCCCCHH--HHHHHHHHHHHH
Confidence 344578899999999999988877665 49999986433 44456778876 666665555443
No 32
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B.
Probab=20.53 E-value=1.4e+02 Score=19.83 Aligned_cols=33 Identities=21% Similarity=0.166 Sum_probs=23.7
Q ss_pred HHHHHHhhccCCCCcccccccccchHHHHHHHh
Q 030103 21 NQILRELSREWPGNSYDLLGRNCNHFCDEFCDR 53 (183)
Q Consensus 21 ~eiL~~Ls~ew~g~tYdLL~rNCNHFSdalc~~ 53 (183)
-+-+..+.+.|..-.+..+.|..|-.+|.|++.
T Consensus 51 ~~~i~~~~~~~~~~~~~~i~r~~N~~A~~LA~~ 83 (87)
T PF13456_consen 51 IQDIRSLLDRFWNVSVSHIPREQNKVADALAKF 83 (87)
T ss_dssp HHHHHHHHCCCSCEEEEE--GGGSHHHHHHHHH
T ss_pred chhhhhhhccccceEEEEEChHHhHHHHHHHHH
Confidence 333445557788889999999999999999874
No 33
>PF11022 DUF2611: Protein of unknown function (DUF2611); InterPro: IPR021278 This family is conserved in the Dikarya of Fungi. The function is not known.
Probab=20.32 E-value=71 Score=23.51 Aligned_cols=21 Identities=10% Similarity=-0.077 Sum_probs=18.2
Q ss_pred cCCCCCChHHHHHHhhhhhhh
Q 030103 54 LGVPKLPGWVNRFANAGDAAM 74 (183)
Q Consensus 54 L~gk~IP~wINRLA~iG~~~~ 74 (183)
+.|+.||.+++-++-+|..+.
T Consensus 7 I~Gr~V~~H~LAi~tLg~~~~ 27 (71)
T PF11022_consen 7 IFGRQVQSHYLAIATLGTVFG 27 (71)
T ss_pred ecccccccchhHHHHHHHHHH
Confidence 468999999999999998665
Done!