Query 030103
Match_columns 183
No_of_seqs 125 out of 418
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 13:40:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030103.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030103hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wp7_A PPPDE peptidase domain- 100.0 1.2E-29 4.2E-34 206.8 4.5 83 1-83 65-154 (168)
2 4dot_A Group XVI phospholipase 94.5 0.017 5.9E-07 45.5 2.3 33 20-52 89-122 (140)
3 4dpz_X HRAS-like suppressor 2; 94.3 0.015 5E-07 45.7 1.6 19 34-52 104-122 (137)
4 2lkt_A Retinoic acid receptor 94.0 0.018 6.2E-07 42.9 1.5 16 35-50 105-120 (125)
5 1rpq_W Peptide E131; receptor- 43.4 5.7 0.00019 23.3 0.3 14 42-55 2-15 (26)
6 2wj8_A Nucleoprotein; RNA bind 29.8 25 0.00087 31.7 2.3 33 18-52 285-326 (391)
7 1ep7_A Thioredoxin CH1, H-type 28.3 13 0.00044 24.6 0.1 66 19-88 41-106 (112)
8 4b4o_A Epimerase family protei 20.6 1.4E+02 0.0047 23.3 4.8 51 17-67 195-252 (298)
9 2job_A Antilipopolysaccharide 16.4 75 0.0026 24.0 2.2 28 18-45 9-36 (102)
10 3qfa_C Thioredoxin; protein-pr 15.7 44 0.0015 22.7 0.7 41 20-63 49-89 (116)
No 1
>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A
Probab=99.95 E-value=1.2e-29 Score=206.84 Aligned_cols=83 Identities=20% Similarity=0.387 Sum_probs=76.8
Q ss_pred CceeEEEEEcCCccCCHHHHHHHHHHhhcc-CCCCcccccccccchHHHHHHHhcCCCCCChHHHHHHh------hhhhh
Q 030103 1 MYTYRESIVLGKTNFSIFKVNQILRELSRE-WPGNSYDLLGRNCNHFCDEFCDRLGVPKLPGWVNRFAN------AGDAA 73 (183)
Q Consensus 1 m~~yREsI~LG~T~lt~~ev~eiL~~Ls~e-w~g~tYdLL~rNCNHFSdalc~~L~gk~IP~wINRLA~------iG~~~ 73 (183)
+++|||+|+||+|++++++|+++|++|+++ |++++||||.||||||||+||++|+|++||+||||||+ +|.++
T Consensus 65 ~g~~resi~lG~T~~~~~~~~~~l~~l~~~~~~g~~Y~Ll~~NCNhFs~~l~~~L~gk~IP~wInrl~~~vl~tp~G~~l 144 (168)
T 2wp7_A 65 LGPPDSVVDVGNTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDLPSEVLSTPFGQAL 144 (168)
T ss_dssp TCSCSEEEEEEEECCCHHHHHHHHHHHHTTTCSGGGCBTTTBSHHHHHHHHHHHHHSCCCCHHHHTHHHHHHTSHHHHHH
T ss_pred CCCeEEEEECCCccCCHHHHHHHHHHhhhccCCcccCchhhhccchhHHHHHHHhcCCCCcHHHHHHHHHHhcCcHHHHH
Confidence 367999999999999999999999999998 99999999999999999999999999999999999999 68888
Q ss_pred hhccchhHHH
Q 030103 74 MEVAGTTALR 83 (183)
Q Consensus 74 ~~~~~nta~~ 83 (183)
.++.++....
T Consensus 145 ~~~l~~~~~~ 154 (168)
T 2wp7_A 145 RPFLDSIQIQ 154 (168)
T ss_dssp HHHHTTCCCC
T ss_pred HHHHHHHhhC
Confidence 8887665433
No 2
>4dot_A Group XVI phospholipase A2; alpha/beta fold, phospholipase/acyltransferase, phosphatidyl phosphatidylethanolamine, membrane, hydrolase; 1.96A {Homo sapiens}
Probab=94.45 E-value=0.017 Score=45.52 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=22.8
Q ss_pred HHHHHHHhhccCC-CCcccccccccchHHHHHHH
Q 030103 20 VNQILRELSREWP-GNSYDLLGRNCNHFCDEFCD 52 (183)
Q Consensus 20 v~eiL~~Ls~ew~-g~tYdLL~rNCNHFSdalc~ 52 (183)
.++++++....-. -..|+||.+||-||+..+.-
T Consensus 89 ~~~iv~rA~~~lG~e~~Y~ll~nNCEHFvt~cr~ 122 (140)
T 4dot_A 89 CSKIIQRAEELVGQEVLYKLTSENCEHFVNELRY 122 (140)
T ss_dssp HHHHHHHHHHTTTCBCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccccccccChHHHHHHHhc
Confidence 4455554433222 26999999999999987755
No 3
>4dpz_X HRAS-like suppressor 2; alpha/beta fold, enzyme phospholipid acyltransferase, hydrol transferase; 1.25A {Homo sapiens} PDB: 4fa0_A 2kyt_A
Probab=94.29 E-value=0.015 Score=45.74 Aligned_cols=19 Identities=32% Similarity=0.655 Sum_probs=11.7
Q ss_pred CcccccccccchHHHHHHH
Q 030103 34 NSYDLLGRNCNHFCDEFCD 52 (183)
Q Consensus 34 ~tYdLL~rNCNHFSdalc~ 52 (183)
..|+||.+||-||+..+.-
T Consensus 104 ~~Y~ll~nNCEHFvt~cry 122 (137)
T 4dpz_X 104 LPYSLTSDNCEHFVNHLRY 122 (137)
T ss_dssp EC-----CHHHHHHHHHHH
T ss_pred cccCcCccChHHHHHHHhc
Confidence 4899999999999987754
No 4
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=93.98 E-value=0.018 Score=42.95 Aligned_cols=16 Identities=38% Similarity=1.061 Sum_probs=14.1
Q ss_pred cccccccccchHHHHH
Q 030103 35 SYDLLGRNCNHFCDEF 50 (183)
Q Consensus 35 tYdLL~rNCNHFSdal 50 (183)
.||||.+||=||+..+
T Consensus 105 ~Y~l~~nNCEHFa~~c 120 (125)
T 2lkt_A 105 KYSIVSRNCEHFVTQL 120 (125)
T ss_dssp CSSCHHHHHHHHHHHH
T ss_pred CcCCCccCHHHHHhhh
Confidence 6999999999999654
No 5
>1rpq_W Peptide E131; receptor-peptide complex, membrane protein; HET: NAG BMA NDG CIT; 3.00A {Homo sapiens} PDB: 1kco_A
Probab=43.42 E-value=5.7 Score=23.26 Aligned_cols=14 Identities=43% Similarity=0.833 Sum_probs=10.3
Q ss_pred ccchHHHHHHHhcC
Q 030103 42 NCNHFCDEFCDRLG 55 (183)
Q Consensus 42 NCNHFSdalc~~L~ 55 (183)
.|+|||-++--.|+
T Consensus 2 qcphfcyeldyelc 15 (26)
T 1rpq_W 2 QCPHFCYELDYELC 15 (26)
T ss_dssp CCCTHHHHSSSCCS
T ss_pred CCCeeeeecCcccC
Confidence 59999988755554
No 6
>2wj8_A Nucleoprotein; RNA binding protein RNA complex, nucleocapsid (N), ribonucleoprotein, respiratory syncytial virus (RSV); 3.29A {Human respiratory syncytial virus astrain long} PDB: 2yhm_A 2yhp_A 2yhq_A
Probab=29.82 E-value=25 Score=31.72 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhccCCCCcccccc---------cccchHHHHHHH
Q 030103 18 FKVNQILRELSREWPGNSYDLLG---------RNCNHFCDEFCD 52 (183)
Q Consensus 18 ~ev~eiL~~Ls~ew~g~tYdLL~---------rNCNHFSdalc~ 52 (183)
-||.+++++|..+ ..=|||.. -||+||+..+..
T Consensus 285 ~evy~~~~k~G~E--sG~~Hlr~nPKA~LLSLtncPnFaSVVLG 326 (391)
T 2wj8_A 285 VEVYEYAQKLGGE--AGFYHILNNPKASLLSLTQFPHFSSVVLG 326 (391)
T ss_dssp HHHHHHHHHHGGG--GGGTTTTTCGGGGGGCSTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCcc--chhhhhhhCCcchheecccCCCchhheec
Confidence 3566778888764 23466654 499999977654
No 7
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=28.28 E-value=13 Score=24.57 Aligned_cols=66 Identities=15% Similarity=0.327 Sum_probs=37.7
Q ss_pred HHHHHHHHhhccCCCCcccccccccchHHHHHHHhcCCCCCChHHHHHHhhhhhhhhccchhHHHhhhhh
Q 030103 19 KVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLPGWVNRFANAGDAAMEVAGTTALRLRQAK 88 (183)
Q Consensus 19 ev~eiL~~Ls~ew~g~tYdLL~rNCNHFSdalc~~L~gk~IP~wINRLA~iG~~~~~~~~nta~~lrqak 88 (183)
.+...++++..+|.+ .+.++.-||... .++++.+....+|..+.- +-|.......|.....|++.-
T Consensus 41 ~~~~~l~~~~~~~~~-~~~~~~vd~~~~-~~~~~~~~v~~~Pt~~~~--~~G~~~~~~~G~~~~~l~~~l 106 (112)
T 1ep7_A 41 MIAPLFETLSNDYAG-KVIFLKVDVDAV-AAVAEAAGITAMPTFHVY--KDGVKADDLVGASQDKLKALV 106 (112)
T ss_dssp HHHHHHHHHHHHTTT-TSEEEEEETTTT-HHHHHHHTCCBSSEEEEE--ETTEEEEEEESCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-CeEEEEEECCch-HHHHHHcCCCcccEEEEE--ECCeEEEEEcCCCHHHHHHHH
Confidence 344556667777765 577777777653 467788888888875432 234433333333444454433
No 8
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=20.63 E-value=1.4e+02 Score=23.33 Aligned_cols=51 Identities=22% Similarity=0.239 Sum_probs=32.1
Q ss_pred HHHHHHHH-HHhhccCCCCcccccccccch---HHHHHHHhcCCC---CCChHHHHHH
Q 030103 17 IFKVNQIL-RELSREWPGNSYDLLGRNCNH---FCDEFCDRLGVP---KLPGWVNRFA 67 (183)
Q Consensus 17 ~~ev~eiL-~~Ls~ew~g~tYdLL~rNCNH---FSdalc~~L~gk---~IP~wINRLA 67 (183)
.+++-+.+ .-+...=..+.|++-..+.-. |.+.+++.|..+ +||.|+.++.
T Consensus 195 v~Dva~a~~~~~~~~~~~g~yn~~~~~~~t~~e~~~~ia~~lgrp~~~pvP~~~~~~~ 252 (298)
T 4b4o_A 195 IGDLAGILTHALEANHVHGVLNGVAPSSATNAEFAQTFGAALGRRAFIPLPSAVVQAV 252 (298)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEESCSCCCBHHHHHHHHHHHHTCCCCCCBCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCeEEEECCCccCHHHHHHHHHHHhCcCCcccCCHHHHHHH
Confidence 34444443 444443344589998776544 566777777543 6899998874
No 9
>2job_A Antilipopolysaccharide factor; ALF, lipid A binding protein, endotoxin, lipid binding protein; NMR {Penaeus monodon}
Probab=16.38 E-value=75 Score=24.02 Aligned_cols=28 Identities=18% Similarity=0.481 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhccCCCCcccccccccch
Q 030103 18 FKVNQILRELSREWPGNSYDLLGRNCNH 45 (183)
Q Consensus 18 ~ev~eiL~~Ls~ew~g~tYdLL~rNCNH 45 (183)
+-+..+++.|..-|..+.-+||-|-||-
T Consensus 9 ~l~~~i~~kl~~Lw~~g~v~~lGH~C~~ 36 (102)
T 2job_A 9 AVAAAVASKIVGLWRNEKTELLGHECKF 36 (102)
T ss_dssp HHHHHHHHHHHHTCCSSCEEETTEEEEE
T ss_pred HHHHHHHHHHHhheeCCCEEEcCCeEEE
Confidence 3466788999999999999999999983
No 10
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=15.74 E-value=44 Score=22.70 Aligned_cols=41 Identities=12% Similarity=0.323 Sum_probs=22.2
Q ss_pred HHHHHHHhhccCCCCcccccccccchHHHHHHHhcCCCCCChHH
Q 030103 20 VNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLPGWV 63 (183)
Q Consensus 20 v~eiL~~Ls~ew~g~tYdLL~rNCNHFSdalc~~L~gk~IP~wI 63 (183)
+...+++|..+|.+ ..++.=||... .++++.+....+|..|
T Consensus 49 ~~p~l~~l~~~~~~--v~~~~vd~d~~-~~l~~~~~v~~~Pt~~ 89 (116)
T 3qfa_C 49 IKPFFHSLSEKYSN--VIFLEVDVDDC-QDVASECEVKSMPTFQ 89 (116)
T ss_dssp HHHHHHHHHTTCTT--SEEEEEETTTT-HHHHHHTTCCSSSEEE
T ss_pred HHHHHHHHHHHCCC--CEEEEEECCCC-HHHHHHcCCccccEEE
Confidence 33455555555544 55555555432 4566666666666644
Done!