Query 030103
Match_columns 183
No_of_seqs 125 out of 418
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 13:40:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030103.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030103hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vlpa1 d.41.2.2 (A:1-149) Nic 45.8 1.6 0.00012 32.4 -0.6 41 17-57 50-91 (149)
2 d1rtya_ a.25.2.2 (A:) Putative 24.8 22 0.0016 26.0 2.8 53 18-70 70-139 (161)
3 d1noga_ a.25.2.2 (A:) Hypothet 23.1 19 0.0014 26.2 2.1 53 18-70 62-131 (149)
4 d2fnaa2 c.37.1.20 (A:1-283) Ar 21.6 1.1E+02 0.0077 21.0 6.0 72 6-92 201-274 (283)
5 d1yira2 d.41.2.2 (A:4-144) Nic 20.8 8.2 0.0006 28.0 -0.4 42 17-59 52-94 (141)
6 d1ybea2 d.41.2.2 (A:8-167) Nic 19.4 7.4 0.00054 28.9 -1.0 46 16-61 65-116 (160)
7 d1f9ma_ c.47.1.1 (A:) Thioredo 18.0 35 0.0025 22.3 2.4 63 19-85 42-104 (112)
8 d2es7a1 c.47.1.20 (A:7-125) Hy 16.0 47 0.0034 22.2 2.8 45 18-63 46-90 (119)
9 d1oe8a1 a.45.1.1 (A:85-207) Cl 13.6 8.7 0.00063 25.6 -1.8 19 10-28 1-19 (123)
10 d1g5ba_ d.159.1.3 (A:) lambda 13.6 66 0.0048 22.4 3.1 26 3-28 11-36 (219)
No 1
>d1vlpa1 d.41.2.2 (A:1-149) Nicotinate phosphoribosyltransferase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=45.77 E-value=1.6 Score=32.40 Aligned_cols=41 Identities=7% Similarity=0.131 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhhc-cCCCCcccccccccchHHHHHHHhcCCC
Q 030103 17 IFKVNQILRELSR-EWPGNSYDLLGRNCNHFCDEFCDRLGVP 57 (183)
Q Consensus 17 ~~ev~eiL~~Ls~-ew~g~tYdLL~rNCNHFSdalc~~L~gk 57 (183)
...+++.|+-|+. +|..+..+-|..+|++|.+++..+|-+-
T Consensus 50 ~~gl~~~i~~l~~lrFt~eel~yL~~~~~~~~~~fl~~L~~~ 91 (149)
T d1vlpa1 50 INWLKEQFSYLGNLRFTEEEIEYLKQEIPYLPSAYIKYISSS 91 (149)
T ss_dssp HHHHHHHHHHGGGCCCCHHHHHHHHHHCTTSCHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHcCCCCCHHHHHHHHhC
Confidence 3567888888885 8999999999999999999999998653
No 2
>d1rtya_ a.25.2.2 (A:) Putative ATP-binding cobalamin adenosyltransferase YvqK {Bacillus subtilis [TaxId: 1423]}
Probab=24.84 E-value=22 Score=26.03 Aligned_cols=53 Identities=13% Similarity=0.073 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhccCCCCccccccccc-----chHHHHHHHhc------------CCCCCChHHHHHHhhh
Q 030103 18 FKVNQILRELSREWPGNSYDLLGRNC-----NHFCDEFCDRL------------GVPKLPGWVNRFANAG 70 (183)
Q Consensus 18 ~ev~eiL~~Ls~ew~g~tYdLL~rNC-----NHFSdalc~~L------------~gk~IP~wINRLA~iG 70 (183)
..+++.++.+....++-+.=+|.--+ -|.|..+|++. +...+..|+|||+++-
T Consensus 70 ~~LE~~ID~~~~~lp~l~~FILPGGs~~~A~lh~aRtv~RRaER~~v~l~~~~~v~~~~~~YlNRLSD~l 139 (161)
T d1rtya_ 70 SFLETRIDAYTAEAPELKKFILPGGSKCASLLHIARTITRRAERRVVALMKSEEIHETVLRYLNRLSDYF 139 (161)
T ss_dssp HHHHHHHHHHHHHSCCCCSCBCSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 34566778887777666666666554 48889998765 2346667999988754
No 3
>d1noga_ a.25.2.2 (A:) Hypothetical protein Ta0546 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=23.10 E-value=19 Score=26.20 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhccCCCCcccccccccc-----hHHHHHHHhc------------CCCCCChHHHHHHhhh
Q 030103 18 FKVNQILRELSREWPGNSYDLLGRNCN-----HFCDEFCDRL------------GVPKLPGWVNRFANAG 70 (183)
Q Consensus 18 ~ev~eiL~~Ls~ew~g~tYdLL~rNCN-----HFSdalc~~L------------~gk~IP~wINRLA~iG 70 (183)
+.+++.++++....++-+.=+|.--+. |.|..+|++. +...+..|+|||+++-
T Consensus 62 ~~LE~~id~~~~~lp~l~~FiLPGG~~~~a~lH~aRtv~RRaER~lv~l~~~~~v~~~~~~YlNRLSD~l 131 (149)
T d1noga_ 62 DYLEARVKEMKAEIGKIELFVVPGGSVESASLHMARAVSRRLERRIVAASKLTEINKNVLIYANRLSSIL 131 (149)
T ss_dssp HHHHHHHHHHHHHHCCCCSCBCSCSSHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccceeecCCchHHHHHHHHHhhhhHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Confidence 445667777776666666666666553 8888888765 2334556888888743
No 4
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=21.59 E-value=1.1e+02 Score=20.98 Aligned_cols=72 Identities=21% Similarity=0.258 Sum_probs=39.3
Q ss_pred EEEEcCCccCCHHHHHHHHHHhhcc--CCCCcccccccccchHHHHHHHhcCCCCCChHHHHHHhhhhhhhhccchhHHH
Q 030103 6 ESIVLGKTNFSIFKVNQILRELSRE--WPGNSYDLLGRNCNHFCDEFCDRLGVPKLPGWVNRFANAGDAAMEVAGTTALR 83 (183)
Q Consensus 6 EsI~LG~T~lt~~ev~eiL~~Ls~e--w~g~tYdLL~rNCNHFSdalc~~L~gk~IP~wINRLA~iG~~~~~~~~nta~~ 83 (183)
+.+.|+. ++.+++.+++...-.. +..+. .+.+++... ++|.||..+...-..-.....-+...
T Consensus 201 ~~i~L~~--l~~~e~~~~l~~~~~~~~~~~~~-----------~~~i~~~~~--G~P~~L~~~~~~~~~~~~~~~~~~~~ 265 (283)
T d2fnaa2 201 STVELKP--FSREEAIEFLRRGFQEADIDFKD-----------YEVVYEKIG--GIPGWLTYFGFIYLDNKNLDFAINQT 265 (283)
T ss_dssp EEEEECC--CCHHHHHHHHHHHHHHHTCCCCC-----------HHHHHHHHC--SCHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred eEEeeCC--CCHHHHHHHHHhhhhhcCCCHHH-----------HHHHHHHhC--CCHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3455554 7888999988765432 22211 234554444 57999988765443222233334455
Q ss_pred hhhhhhhhh
Q 030103 84 LRQAKTEIV 92 (183)
Q Consensus 84 lrqak~~~~ 92 (183)
+++|+.++.
T Consensus 266 ~~~~~~~~~ 274 (283)
T d2fnaa2 266 LEYAKKLIL 274 (283)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555543
No 5
>d1yira2 d.41.2.2 (A:4-144) Nicotinate phosphoribosyltransferase, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=20.83 E-value=8.2 Score=28.04 Aligned_cols=42 Identities=14% Similarity=0.245 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhc-cCCCCcccccccccchHHHHHHHhcCCCCC
Q 030103 17 IFKVNQILRELSR-EWPGNSYDLLGRNCNHFCDEFCDRLGVPKL 59 (183)
Q Consensus 17 ~~ev~eiL~~Ls~-ew~g~tYdLL~rNCNHFSdalc~~L~gk~I 59 (183)
...+++.|+.|+. +|+.+.-+-|+ .|+.|.++++.+|.+-+.
T Consensus 52 ~~gl~~~i~~l~~lrFt~eei~yL~-~~~~f~~~fldyL~~frf 94 (141)
T d1yira2 52 LPAIREQLEYLAGLAISDEQLAFLE-RIPFLAPDFIRFLGLFRF 94 (141)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHH-TSTTSCHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH-cCCCCCHHHHHHHHhCCC
Confidence 3567888888875 79998888885 599999999998865443
No 6
>d1ybea2 d.41.2.2 (A:8-167) Nicotinate phosphoribosyltransferase, N-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
Probab=19.42 E-value=7.4 Score=28.90 Aligned_cols=46 Identities=20% Similarity=0.180 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHhhc-cCCCCcccccccccc-----hHHHHHHHhcCCCCCCh
Q 030103 16 SIFKVNQILRELSR-EWPGNSYDLLGRNCN-----HFCDEFCDRLGVPKLPG 61 (183)
Q Consensus 16 t~~ev~eiL~~Ls~-ew~g~tYdLL~rNCN-----HFSdalc~~L~gk~IP~ 61 (183)
-...+++.|+.|+. +|..+..+-|..+|. .|..+++.+|..-+.+.
T Consensus 65 ~~~gL~~~i~~l~~lrFt~eei~yL~~~~~~~~~~~f~~~fl~~L~~f~f~~ 116 (160)
T d1ybea2 65 DEMELREQLDHARTLRLSKKENIWLAGNTFYGRSQIFEPEFLSWLSSYQLPE 116 (160)
T ss_dssp CHHHHHHHHHHHTTCCCCHHHHHHHHHSCSSSCSCCSCHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHhcCCccccCcCCHHHHHHHhcCCCCc
Confidence 34578888888885 899999999999985 48888888887655543
No 7
>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}
Probab=17.96 E-value=35 Score=22.35 Aligned_cols=63 Identities=19% Similarity=0.308 Sum_probs=42.4
Q ss_pred HHHHHHHHhhccCCCCcccccccccchHHHHHHHhcCCCCCChHHHHHHhhhhhhhhccchhHHHhh
Q 030103 19 KVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLPGWVNRFANAGDAAMEVAGTTALRLR 85 (183)
Q Consensus 19 ev~eiL~~Ls~ew~g~tYdLL~rNCNHFSdalc~~L~gk~IP~wINRLA~iG~~~~~~~~nta~~lr 85 (183)
.+...+++|..+|.+ .-++.=+|+--..++|+.+....+|..+. + +-|.....+.|....++.
T Consensus 42 ~~~p~~~~l~~~~~~--v~~~~vd~~~~~~~l~~~~~V~~~Pt~~~-~-k~G~~v~~~~G~~~~~l~ 104 (112)
T d1f9ma_ 42 AMAPKYEKLAEEYLD--VIFLKLDCNQENKTLAKELGIRVVPTFKI-L-KENSVVGEVTGAKYDKLL 104 (112)
T ss_dssp HHHHHHHHHHHHCTT--SEEEEEECSSTTHHHHHHHCCSSSSEEEE-E-ETTEEEEEEESSCHHHHH
T ss_pred HHHHHHhhhcccccc--ceeecccccccchhhHhheeeccCCEEEE-E-ECCEEEEEEeCCCHHHHH
Confidence 455677888888764 45677777755678999999999998764 2 446655555554444443
No 8
>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}
Probab=15.99 E-value=47 Score=22.19 Aligned_cols=45 Identities=20% Similarity=0.350 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhccCCCCcccccccccchHHHHHHHhcCCCCCChHH
Q 030103 18 FKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLPGWV 63 (183)
Q Consensus 18 ~ev~eiL~~Ls~ew~g~tYdLL~rNCNHFSdalc~~L~gk~IP~wI 63 (183)
.++.-++++|..+|.+....+..=||. -..++++++..+.||.-+
T Consensus 46 ~~~~pvl~eL~~~~~~~~~~~~~Vd~d-~~~~l~~~~~V~~~Pt~~ 90 (119)
T d2es7a1 46 SDNPVMIAELLREFPQFDWQVAVADLE-QSEAIGDRFNVRRFPATL 90 (119)
T ss_dssp CCHHHHHHHHHHTCTTSCCEEEEECHH-HHHHHHHTTTCCSSSEEE
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEECC-CCHHHHHhcCcCcceEEE
Confidence 456677888888888877777766765 335788999999999754
No 9
>d1oe8a1 a.45.1.1 (A:85-207) Class alpha GST {Blood fluke (Schistosoma haematobium) [TaxId: 6185]}
Probab=13.65 E-value=8.7 Score=25.65 Aligned_cols=19 Identities=16% Similarity=0.427 Sum_probs=15.0
Q ss_pred cCCccCCHHHHHHHHHHhh
Q 030103 10 LGKTNFSIFKVNQILRELS 28 (183)
Q Consensus 10 LG~T~lt~~ev~eiL~~Ls 28 (183)
||+|......|+.+++.+.
T Consensus 1 ~G~~~~E~~~vD~i~~~~~ 19 (123)
T d1oe8a1 1 MGGTEEEYYNVEKLIGQAE 19 (123)
T ss_dssp SCSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhHHH
Confidence 7889888888888876654
No 10
>d1g5ba_ d.159.1.3 (A:) lambda ser/thr protein phosphatase {Bacteriophage lambda [TaxId: 10710]}
Probab=13.62 E-value=66 Score=22.43 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=23.2
Q ss_pred eeEEEEEcCCccCCHHHHHHHHHHhh
Q 030103 3 TYRESIVLGKTNFSIFKVNQILRELS 28 (183)
Q Consensus 3 ~yREsI~LG~T~lt~~ev~eiL~~Ls 28 (183)
.||+.+.+|+.+...+++.++|+.+.
T Consensus 11 ~~~rI~vIgDIHG~~~~L~~lL~~i~ 36 (219)
T d1g5ba_ 11 KYRNIWVVGDLHGCYTNLMNKLDTIG 36 (219)
T ss_dssp GCSCEEEECCCTTCHHHHHHHHHHHT
T ss_pred CCCeEEEEEecccCHHHHHHHHHHcC
Confidence 47777889999999999999999875
Done!