BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030104
(183 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TQ1|A Chain A, Solution Structure Of At5g66040, A Putative Protein From
Arabidosis Thaliana
Length = 129
Score = 162 bits (409), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 77/113 (68%), Positives = 91/113 (80%), Gaps = 1/113 (0%)
Query: 71 VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV 130
VP+SV V VAH+LL AGHRYLDVRTPEEFS GHA GAINVPYM R SGM+KN F+E+V
Sbjct: 16 VPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQV 75
Query: 131 STRFRKHDEIIVGCQSGKRSMMAATDLLN-GFAGITDIAGGFAAWRQNGLPTE 182
S+ F + D IIVGCQSG RS+ A TDLL+ GF G+ DI GG++AW +NGLPT+
Sbjct: 76 SSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK 128
>pdb|3TP9|A Chain A, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
pdb|3TP9|B Chain B, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
Length = 474
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 13/108 (12%)
Query: 76 PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 135
P V L Q G LDVR +E++ GH A ++P ++K + +V
Sbjct: 378 PDEVRGALAQQGLWLLDVRNVDEWAGGHLPQAHHIP--------LSKLAAHIHDVP---- 425
Query: 136 KHDEIIVGCQSGKRSMMAATDL-LNGFAGITDIAGGFAAWRQNGLPTE 182
+ + V C++G RS +AA+ L +G + + GG+ AWR G P E
Sbjct: 426 RDGSVCVYCRTGGRSAIAASLLRAHGVGDVRNXVGGYEAWRGKGFPVE 473
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 66 LEAVGVPTSV---PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPY 112
L +G P V P RV + G LDVR + F+ H G++N+P+
Sbjct: 264 LAELGAPERVDLPPERV--RAWREGGVVLDVRPADAFAKRHLAGSLNIPW 311
>pdb|2KL3|A Chain A, Solution Nmr Structure Of The Rhodanese-Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437a
Length = 132
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 14/94 (14%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150
LDVR ++ GH GA+ +P V+ S+ K +I V +G
Sbjct: 24 LDVRDRSTYNDGHIMGAMAMPIE-----------DLVDRASSSLEKSRDIYV-YGAGDEQ 71
Query: 151 MMAATDLLN--GFAGITDIAGGFAAWRQNGLPTE 182
A +LL GF ++++ GG AAW+ G PTE
Sbjct: 72 TSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE 105
>pdb|3R2U|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|C Chain C, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|D Chain D, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
Length = 466
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 40/169 (23%)
Query: 26 HGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQ 85
HG + G +++ D+ + IG+ L++ + +L G+ V T + ++ +
Sbjct: 309 HGGHIEGTINIPYDKNFINQIGWY----LNYDQEINLIGDYHLVSKATHTLQLIGYDDI- 363
Query: 86 AGHRY----------------------LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKN 123
AG++ LDVR E++ GH + A++VP+ +
Sbjct: 364 AGYQLPQSKIQTRSIHSEDITGNESHILDVRNDNEWNNGHLSQAVHVPHGKLL------- 416
Query: 124 LKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLN-GFAGITDIAGGF 171
E F K+D I V CQSG RS +A L + G+ I ++ G+
Sbjct: 417 -----ETDLPFNKNDVIYVHCQSGIRSSIAIGILEHKGYHNIINVNEGY 460
Score = 30.4 bits (67), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS 131
D+R+ E + GH G IN+PY + + L + +E++
Sbjct: 300 FDLRSKEAYHGGHIEGTINIPYDKNFINQIGWYLNYDQEIN 340
>pdb|3GK5|A Chain A, Crystal Structure Of Rhodanese-Related Protein
(Tvg0868615) From Thermoplasma Volcanium, Northeast
Structural Genomics Consortium Target Tvr109a
Length = 108
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 12/95 (12%)
Query: 87 GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQS 146
+ LDVR P E G +IN+P S + + K +E R +K+ I C
Sbjct: 17 AYTVLDVREPFELIFGSIANSINIPI-----SELREKWKILE----RDKKYAVI---CAH 64
Query: 147 GKRSMMAATDLLNGFAGITDIAGGFAAWRQNGLPT 181
G RS A L I D+ GG +W + G P
Sbjct: 65 GNRSAAAVEFLSQLGLNIVDVEGGIQSWIEEGYPV 99
>pdb|3ILM|A Chain A, Crystal Structure Of The Alr3790 Protein From Anabaena Sp.
Northeast Structural Genomics Consortium Target Nsr437h
pdb|3ILM|B Chain B, Crystal Structure Of The Alr3790 Protein From Anabaena Sp.
Northeast Structural Genomics Consortium Target Nsr437h
pdb|3ILM|C Chain C, Crystal Structure Of The Alr3790 Protein From Anabaena Sp.
Northeast Structural Genomics Consortium Target Nsr437h
pdb|3ILM|D Chain D, Crystal Structure Of The Alr3790 Protein From Anabaena Sp.
Northeast Structural Genomics Consortium Target Nsr437h
Length = 141
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 14/94 (14%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150
LDVR ++ GH GA P V+ S+ K +I V +G
Sbjct: 21 LDVRDRSTYNDGHIXGAXAXPIE-----------DLVDRASSSLEKSRDIYV-YGAGDEQ 68
Query: 151 MMAATDLLN--GFAGITDIAGGFAAWRQNGLPTE 182
A +LL GF ++++ GG AAW+ G PTE
Sbjct: 69 TSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE 102
>pdb|2EG4|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase
Length = 230
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 43/104 (41%), Gaps = 19/104 (18%)
Query: 91 LDVRTPEEFSA----------GHATGAINVPY-MYRVGSGMTKNLKFVEEVSTRFRKHDE 139
LDVR+PEEF G G+ N P ++ G+ + L + E
Sbjct: 135 LDVRSPEEFQGKVHPPCCPRGGRIPGSKNAPLELFLSPEGLLERLGL--------QPGQE 186
Query: 140 IIVGCQSGKRSMMAATDLLNGFAGITDIAGGFAAWRQNGLPTEP 183
+ V C SG RS +A L + + G W Q GLPTEP
Sbjct: 187 VGVYCHSGARSAVAFFVLRSLGVRARNYLGSMHEWLQEGLPTEP 230
>pdb|1GN0|A Chain A, Escherichia Coli Glpe Sulfurtransferase Soaked With Kcn
Length = 108
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 50/110 (45%), Gaps = 15/110 (13%)
Query: 75 VPVRVAHELLQAGHRYL-DVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 133
+ V AH+ LQ L D+R P+ F+ GHA A ++ +G+ M N + T
Sbjct: 7 INVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTND-TLGAFMRDN-----DFDT- 59
Query: 134 FRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTE 182
++V C G S AA LL G+ + I GGF AW Q P E
Sbjct: 60 -----PVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAW-QRQFPAE 103
>pdb|3HIX|A Chain A, Crystal Structure Of The Rhodanese_3 Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437i
pdb|3HIX|B Chain B, Crystal Structure Of The Rhodanese_3 Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437i
pdb|3HIX|C Chain C, Crystal Structure Of The Rhodanese_3 Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437i
Length = 106
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 14/94 (14%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150
LDVR ++ GH GA P V+ S+ K +I V +G
Sbjct: 17 LDVRDRSTYNDGHIXGAXAXPIE-----------DLVDRASSSLEKSRDIYV-YGAGDEQ 64
Query: 151 MMAATDLLN--GFAGITDIAGGFAAWRQNGLPTE 182
A +LL GF ++++ GG AAW+ G PTE
Sbjct: 65 TSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE 98
>pdb|3K9R|A Chain A, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c.
pdb|3K9R|B Chain B, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c.
pdb|3K9R|C Chain C, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c.
pdb|3K9R|D Chain D, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c
Length = 115
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 14/94 (14%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150
LDVR ++ GH GA P V+ S+ K +I V +G
Sbjct: 26 LDVRDRSTYNDGHIXGAXAXPIE-----------DLVDRASSSLEKSRDIYV-YGAGDEQ 73
Query: 151 MMAATDLLN--GFAGITDIAGGFAAWRQNGLPTE 182
A +LL GF ++++ GG AAW+ G PTE
Sbjct: 74 TSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE 107
>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
pdb|3NTA|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
Length = 574
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 18/88 (20%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR---KHDEIIVGCQSG 147
LDVR P E G GA+N+P V+E+ R K EII+ CQ G
Sbjct: 490 LDVRNPGELQNGGLEGAVNIP---------------VDELRDRXHELPKDKEIIIFCQVG 534
Query: 148 KRSMMAATDLLNGFAGITDIAGGFAAWR 175
R +A L+N ++ GG+ ++
Sbjct: 535 LRGNVAYRQLVNNGYRARNLIGGYRTYK 562
>pdb|2JTQ|A Chain A, Rhodanese From E.Coli
pdb|2JTR|A Chain A, Rhodanese Persulfide From E. Coli
pdb|2JTS|A Chain A, Rhodanese With Anions From E. Coli
Length = 85
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 21/88 (23%)
Query: 90 YLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE-VSTRF-RKHDEIIVGCQSG 147
++DVR PE++ H GAIN+P LK V+E ++T K+D + V C +G
Sbjct: 4 WIDVRVPEQYQQEHVQGAINIP------------LKEVKERIATAVPDKNDTVKVYCNAG 51
Query: 148 KRSMMAATDL-------LNGFAGITDIA 168
++S A L + G+ DIA
Sbjct: 52 RQSGQAKEILSEMGYTHVENAGGLKDIA 79
>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICR|B Chain B, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICS|A Chain A, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICS|B Chain B, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICT|A Chain A, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
pdb|3ICT|B Chain B, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
Length = 588
Score = 38.1 bits (87), Expect = 0.003, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 18/92 (19%)
Query: 83 LLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRK---HDE 139
+++ G +DVR P E G G+IN+P ++E+ R + +
Sbjct: 499 IVENGGYLIDVREPNELKQGXIKGSINIP---------------LDELRDRLEEVPVDKD 543
Query: 140 IIVGCQSGKRSMMAATDLLNGFAGITDIAGGF 171
I + CQ G R +AA L + ++ GGF
Sbjct: 544 IYITCQLGXRGYVAARXLXEKGYKVKNVDGGF 575
>pdb|3D1P|A Chain A, Atomic Resolution Structure Of Uncharacterized Protein
From Saccharomyces Cerevisiae
Length = 139
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST-RFRKHDEIIVGCQSGKR 149
+DVR P E+S H +INVPY + L+F +++ + E+I C SGKR
Sbjct: 44 VDVREPSEYSIVHIPASINVPYRSHPDAFALDPLEFEKQIGIPKPDSAKELIFYCASGKR 103
Query: 150 SMMA-ATDLLNGFAGITDIAGGFAAWRQNG 178
A +G++ + G W +G
Sbjct: 104 GGEAQKVASSHGYSNTSLYPGSXNDWVSHG 133
>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
pdb|3NTD|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
Length = 565
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 18/88 (20%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR---KHDEIIVGCQSG 147
LDVR P E G GA+N+P V+E+ R K EII+ Q G
Sbjct: 490 LDVRNPGELQNGGLEGAVNIP---------------VDELRDRMHELPKDKEIIIFSQVG 534
Query: 148 KRSMMAATDLLNGFAGITDIAGGFAAWR 175
R +A L+N ++ GG+ ++
Sbjct: 535 LRGNVAYRQLVNNGYRARNLIGGYRTYK 562
>pdb|2EG3|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase
pdb|2EG3|B Chain B, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase
pdb|2EG4|B Chain B, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase
Length = 230
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 42/104 (40%), Gaps = 19/104 (18%)
Query: 91 LDVRTPEEFSA----------GHATGAINVPY-MYRVGSGMTKNLKFVEEVSTRFRKHDE 139
LDVR+PEEF G G+ N P ++ G+ + L + E
Sbjct: 135 LDVRSPEEFQGKVHPPCCPRGGRIPGSKNAPLELFLSPEGLLERLGL--------QPGQE 186
Query: 140 IIVGCQSGKRSMMAATDLLNGFAGITDIAGGFAAWRQNGLPTEP 183
+ V SG RS +A L + + G W Q GLPTEP
Sbjct: 187 VGVYXHSGARSAVAFFVLRSLGVRARNYLGSMHEWLQEGLPTEP 230
>pdb|1QXN|A Chain A, Solution Structure Of The 30 Kda Polysulfide-Sulfur
Transferase Homodimer From Wolinella Succinogenes
pdb|1QXN|B Chain B, Solution Structure Of The 30 Kda Polysulfide-Sulfur
Transferase Homodimer From Wolinella Succinogenes
Length = 137
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 10/107 (9%)
Query: 78 RVAHELLQAGHR--YLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 135
+ A++LLQ +DVR P+E A N +M R G + L +
Sbjct: 28 KDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSR---GKLEPLL----AKSGLD 80
Query: 136 KHDEIIVGCQSGKRSMMAATDLLN-GFAGITDIAGGFAAWRQNGLPT 181
++V C++ R+ +A L GF I + GG W + GLP+
Sbjct: 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPS 127
>pdb|1GMX|A Chain A, Escherichia Coli Glpe Sulfurtransferase
Length = 108
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 49/110 (44%), Gaps = 15/110 (13%)
Query: 75 VPVRVAHELLQAGHRYL-DVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 133
+ V AH+ LQ L D+R P+ F+ GHA A ++ +G+ M N + T
Sbjct: 7 INVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTND-TLGAFMRDN-----DFDT- 59
Query: 134 FRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTE 182
++V G S AA LL G+ + I GGF AW Q P E
Sbjct: 60 -----PVMVMXYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAW-QRQFPAE 103
>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
pdb|3NT6|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
Length = 574
Score = 35.8 bits (81), Expect = 0.014, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 18/88 (20%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR---FRKHDEIIVGCQSG 147
LDVR P E G GA+N+P V+E+ R K EII+ Q G
Sbjct: 490 LDVRNPGELQNGGLEGAVNIP---------------VDELRDRXHELPKDKEIIIFSQVG 534
Query: 148 KRSMMAATDLLNGFAGITDIAGGFAAWR 175
R +A L+N ++ GG+ ++
Sbjct: 535 LRGNVAYRQLVNNGYRARNLIGGYRTYK 562
>pdb|2HHG|A Chain A, Structure Of Protein Of Unknown Function Rpa3614, Possible
Tyrosine Phosphatase, From Rhodopseudomonas Palustris
Cga009
Length = 139
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 134 FRKHDEIIVGCQSGKRSMMAATDLLN-GFAGITDIAGGFAAWRQNGLPTE 182
F++ + + C G RS +AA + G + I GGF AWR G P E
Sbjct: 83 FQEDKKFVFYCAGGLRSALAAKTAQDXGLKPVAHIEGGFGAWRDAGGPIE 132
>pdb|1YT8|A Chain A, Crystal Structure Of Thiosulfate Sulfurtransferase From
Pseudomonas Aeruginosa
Length = 539
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 91 LDVRTPEEFSAGHATGAINVP 111
LDVRTPEE+ AGH G+ + P
Sbjct: 286 LDVRTPEEYEAGHLPGSRSTP 306
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 13/89 (14%)
Query: 92 DVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSM 151
DVR + F+ H A N+P + E+ R + D I G+
Sbjct: 28 DVREEDPFAQAHPLFAANLPLS-----------RLELEIHARVPRRDTPITVYDDGEGLA 76
Query: 152 MAATDLLN--GFAGITDIAGGFAAWRQNG 178
A L+ G++ + + GG + WR G
Sbjct: 77 PVAAQRLHDLGYSDVALLDGGLSGWRNAG 105
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 15/109 (13%)
Query: 76 PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 135
P +A L + G R LD ++ H GA V + LK E R
Sbjct: 381 PTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWV---------LRSQLKQALE---RLG 428
Query: 136 KHDEIIVGCQSG--KRSMMAATDLLNGFAGITDIAGGFAAWRQNGLPTE 182
+ ++ C S R +A L+G + + GG +AW GLPTE
Sbjct: 429 TAERYVLTCGSSLLARFAVAEVQALSG-KPVFLLDGGTSAWVAAGLPTE 476
>pdb|3HWI|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa2 (Rhodanese-Like Protein) From
Mycobacterium Tuberculosis
pdb|3HWI|B Chain B, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa2 (Rhodanese-Like Protein) From
Mycobacterium Tuberculosis
Length = 298
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 23/81 (28%)
Query: 91 LDVRTPEEFSA----------------GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF 134
+DVR+P+EFS GH GAINVP+ T K EE++ +
Sbjct: 182 IDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANEDGT--FKSDEELAKLY 239
Query: 135 -----RKHDEIIVGCQSGKRS 150
E I C+ G+RS
Sbjct: 240 ADAGLDNSKETIAYCRIGERS 260
>pdb|3AAX|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa3 (Rv3117) From Mycobacterium
Tuberculosis: Monoclinic Form
pdb|3AAX|B Chain B, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa3 (Rv3117) From Mycobacterium
Tuberculosis: Monoclinic Form
Length = 277
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 23/81 (28%)
Query: 91 LDVRTPEEFSA----------------GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF 134
+DVR+P+EFS GH GAINVP+ T K EE++ +
Sbjct: 161 IDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANEDGT--FKSDEELAKLY 218
Query: 135 -----RKHDEIIVGCQSGKRS 150
E I C+ G+RS
Sbjct: 219 ADAGLDNSKETIAYCRIGERS 239
>pdb|3G5J|A Chain A, Crystal Structure Of N-Terminal Domain Of Putative AtpGTP
BINDING Protein From Clostridium Difficile 630
pdb|3G5J|B Chain B, Crystal Structure Of N-Terminal Domain Of Putative AtpGTP
BINDING Protein From Clostridium Difficile 630
Length = 134
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 23/109 (21%)
Query: 90 YLDVRTPEEFSAGHATGAINVPY-----------MYRVGSGMTKNLKFVEEVSTRFR--- 135
++DVRT E+ H AIN P +Y+ K + VS + +
Sbjct: 20 FVDVRTEGEYEEDHILNAINXPLFKNNEHNEVGTIYKXQGKHEAIQKGFDYVSYKLKDIY 79
Query: 136 --------KHDEIIVGCQSGKRSMMAATDLLNGF-AGITDIAGGFAAWR 175
+D I++ C G + +LL+ + + GG+ A+R
Sbjct: 80 LQAAELALNYDNIVIYCARGGXRSGSIVNLLSSLGVNVYQLEGGYKAYR 128
>pdb|1UAR|A Chain A, Crystal Structure Of Rhodanese From Thermus Thermophilus
Hb8
Length = 285
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 25/107 (23%)
Query: 91 LDVRTPEEFS----------------AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF 134
+DVR+P+E+ AGH GA N+P+ V T K EE+ +
Sbjct: 168 VDVRSPQEYRGELTHXPDYPQEGALRAGHIPGAKNIPWAKAVNPDGT--FKSAEELRALY 225
Query: 135 R-----KHDEIIVGCQSGKRSMMAATDL--LNGFAGITDIAGGFAAW 174
K +I+V + +RS + L L G+ + + G + W
Sbjct: 226 EPLGITKDKDIVVYXRIAERSSHSWFVLKYLLGYPHVKNYDGSWTEW 272
>pdb|3IWH|A Chain A, Crystal Structure Of Rhodanese-Like Domain Protein From
Staphylococcus Aureus
pdb|3MZZ|A Chain A, Crystal Structure Of Rhodanese-Like Domain Protein From
Staphylococcus Aureus
Length = 103
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 14/92 (15%)
Query: 89 RYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK 148
+ +DVRT EE + G+ A +P + NL F K++ + C G
Sbjct: 20 QIVDVRTDEETAXGYIPNAKLIP-----XDTIPDNL-------NSFNKNEIYYIVCAGGV 67
Query: 149 RSMMAATDL-LNGFAGITDIAGGFAAWRQNGL 179
RS L NG + ++ GG AW GL
Sbjct: 68 RSAKVVEYLEANGIDAV-NVEGGXHAWGDEGL 98
>pdb|3AAY|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa3 (Rv3117) From Mycobacterium
Tuberculosis: Orthorhombic Form
pdb|3AAY|B Chain B, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa3 (Rv3117) From Mycobacterium
Tuberculosis: Orthorhombic Form
Length = 277
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 16/38 (42%)
Query: 91 LDVRTPEEFSA----------------GHATGAINVPY 112
+DVR+P+EFS GH GAINVP+
Sbjct: 161 IDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPW 198
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,875,124
Number of Sequences: 62578
Number of extensions: 180011
Number of successful extensions: 462
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 421
Number of HSP's gapped (non-prelim): 32
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)