Query 030104
Match_columns 183
No_of_seqs 205 out of 2062
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 08:35:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030104.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030104hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02160 thiosulfate sulfurtra 99.9 1.1E-24 2.5E-29 159.1 12.6 113 71-183 13-128 (136)
2 KOG1530 Rhodanese-related sulf 99.9 1.6E-24 3.4E-29 153.1 10.6 114 69-182 19-135 (136)
3 cd01533 4RHOD_Repeat_2 Member 99.9 5.5E-24 1.2E-28 149.6 11.8 98 69-178 6-109 (109)
4 cd01527 RHOD_YgaP Member of th 99.9 6.7E-24 1.4E-28 146.5 10.4 97 73-181 2-99 (99)
5 PRK00162 glpE thiosulfate sulf 99.9 2.5E-23 5.3E-28 146.1 11.7 100 71-182 3-104 (108)
6 cd01518 RHOD_YceA Member of th 99.9 6.3E-24 1.4E-28 147.3 8.2 98 73-176 2-101 (101)
7 cd01526 RHOD_ThiF Member of th 99.9 1.1E-22 2.4E-27 145.9 10.7 109 69-182 4-119 (122)
8 cd01523 RHOD_Lact_B Member of 99.9 1.2E-22 2.6E-27 140.6 9.8 96 75-175 1-99 (100)
9 cd01524 RHOD_Pyr_redox Member 99.9 2.2E-22 4.7E-27 136.8 10.5 88 75-175 1-89 (90)
10 cd01520 RHOD_YbbB Member of th 99.9 1.4E-22 3.1E-27 146.5 10.1 101 75-176 1-126 (128)
11 cd01521 RHOD_PspE2 Member of t 99.9 2.7E-22 6E-27 141.3 11.0 97 72-181 7-110 (110)
12 cd01519 RHOD_HSP67B2 Member of 99.9 1.4E-22 3E-27 141.4 9.2 100 76-176 2-106 (106)
13 cd01534 4RHOD_Repeat_3 Member 99.9 2.9E-22 6.3E-27 137.5 9.9 89 75-175 1-94 (95)
14 cd01528 RHOD_2 Member of the R 99.9 4.5E-22 9.8E-27 138.0 10.5 91 75-177 2-99 (101)
15 cd01444 GlpE_ST GlpE sulfurtra 99.9 7.6E-22 1.6E-26 135.2 10.6 89 75-175 2-95 (96)
16 cd01447 Polysulfide_ST Polysul 99.9 7E-22 1.5E-26 136.9 9.3 100 75-178 1-103 (103)
17 TIGR03865 PQQ_CXXCW PQQ-depend 99.9 2.6E-21 5.7E-26 145.3 12.2 110 70-181 33-162 (162)
18 cd01449 TST_Repeat_2 Thiosulfa 99.9 1.3E-21 2.7E-26 139.1 9.8 102 75-176 1-118 (118)
19 cd01448 TST_Repeat_1 Thiosulfa 99.9 2.4E-21 5.2E-26 138.6 11.3 104 75-178 2-122 (122)
20 PRK07878 molybdopterin biosynt 99.9 3.1E-21 6.8E-26 163.3 13.3 145 23-182 242-389 (392)
21 cd01525 RHOD_Kc Member of the 99.9 1.4E-21 3.1E-26 136.1 8.8 99 75-175 1-104 (105)
22 cd01535 4RHOD_Repeat_4 Member 99.9 2.5E-21 5.4E-26 142.9 10.5 90 81-182 3-95 (145)
23 cd01530 Cdc25 Cdc25 phosphatas 99.9 2.4E-21 5.2E-26 138.9 9.9 91 74-175 3-120 (121)
24 cd01522 RHOD_1 Member of the R 99.9 2.4E-21 5.1E-26 138.1 9.7 101 75-177 1-105 (117)
25 smart00450 RHOD Rhodanese Homo 99.9 6.5E-21 1.4E-25 130.0 10.3 95 86-180 3-100 (100)
26 cd01529 4RHOD_Repeats Member o 99.9 3.5E-21 7.6E-26 132.3 8.8 85 86-176 11-96 (96)
27 PRK11493 sseA 3-mercaptopyruva 99.9 6.9E-21 1.5E-25 154.7 11.9 138 46-183 116-279 (281)
28 PF00581 Rhodanese: Rhodanese- 99.8 9.6E-21 2.1E-25 132.6 9.8 102 76-177 1-113 (113)
29 PRK07411 hypothetical protein; 99.8 2.8E-20 6.1E-25 157.3 13.3 151 22-183 233-388 (390)
30 PLN02723 3-mercaptopyruvate su 99.8 2.4E-20 5.2E-25 154.1 12.3 109 75-183 192-317 (320)
31 PRK08762 molybdopterin biosynt 99.8 2.5E-20 5.4E-25 157.1 11.9 98 73-182 3-103 (376)
32 cd01445 TST_Repeats Thiosulfat 99.8 3.4E-20 7.4E-25 135.8 11.0 101 75-175 1-137 (138)
33 cd01532 4RHOD_Repeat_1 Member 99.8 2.9E-20 6.3E-25 126.9 8.7 79 86-176 9-92 (92)
34 PRK11493 sseA 3-mercaptopyruva 99.8 7.8E-20 1.7E-24 148.6 12.2 110 73-182 5-134 (281)
35 PRK01415 hypothetical protein; 99.8 7.2E-20 1.6E-24 145.2 11.4 103 70-178 109-213 (247)
36 COG2897 SseA Rhodanese-related 99.8 1.1E-19 2.4E-24 146.7 12.2 140 44-183 117-282 (285)
37 PRK09629 bifunctional thiosulf 99.8 1.2E-19 2.5E-24 160.8 12.3 110 73-182 9-128 (610)
38 PRK05320 rhodanese superfamily 99.8 9.6E-20 2.1E-24 146.0 10.4 102 70-177 107-216 (257)
39 PLN02723 3-mercaptopyruvate su 99.8 2.3E-19 5E-24 148.2 12.1 112 72-183 21-151 (320)
40 cd00158 RHOD Rhodanese Homolog 99.8 1.1E-19 2.5E-24 121.9 8.3 80 85-175 8-89 (89)
41 COG0607 PspE Rhodanese-related 99.8 1.6E-19 3.4E-24 126.3 9.3 86 86-183 19-108 (110)
42 PRK09629 bifunctional thiosulf 99.8 3E-19 6.6E-24 158.1 12.9 138 45-182 109-270 (610)
43 cd01531 Acr2p Eukaryotic arsen 99.8 2.7E-19 5.9E-24 126.5 8.1 96 73-177 2-112 (113)
44 TIGR02981 phageshock_pspE phag 99.8 6E-19 1.3E-23 122.5 9.6 78 86-176 17-97 (101)
45 PRK10287 thiosulfate:cyanide s 99.8 5.2E-19 1.1E-23 123.4 9.2 77 87-176 20-99 (104)
46 PRK00142 putative rhodanese-re 99.8 5.7E-19 1.2E-23 145.3 10.1 102 70-177 109-212 (314)
47 KOG2017 Molybdopterin synthase 99.8 3.2E-19 7E-24 144.7 7.7 173 1-183 239-425 (427)
48 PRK05597 molybdopterin biosynt 99.8 2.2E-18 4.8E-23 144.2 11.8 129 23-176 224-354 (355)
49 cd01443 Cdc25_Acr2p Cdc25 enzy 99.8 8.9E-19 1.9E-23 123.9 7.5 94 73-175 2-112 (113)
50 COG2897 SseA Rhodanese-related 99.7 1.7E-17 3.7E-22 134.0 11.7 114 70-183 8-138 (285)
51 PRK11784 tRNA 2-selenouridine 99.7 1.2E-17 2.6E-22 138.9 9.3 102 77-179 5-131 (345)
52 PRK05600 thiamine biosynthesis 99.7 2.3E-17 4.9E-22 138.6 9.7 124 23-172 240-369 (370)
53 TIGR03167 tRNA_sel_U_synt tRNA 99.7 1.6E-17 3.4E-22 136.4 8.3 94 87-181 2-119 (311)
54 cd01446 DSP_MapKP N-terminal r 99.7 1.4E-16 3E-21 115.6 9.1 101 75-177 2-127 (132)
55 COG1054 Predicted sulfurtransf 99.6 1.5E-15 3.3E-20 121.5 5.8 102 70-177 110-213 (308)
56 PRK01269 tRNA s(4)U8 sulfurtra 99.5 1.4E-13 3.1E-18 119.5 9.4 75 82-168 402-481 (482)
57 KOG1529 Mercaptopyruvate sulfu 99.4 5.8E-12 1.3E-16 100.5 10.0 111 73-183 5-136 (286)
58 KOG3772 M-phase inducer phosph 99.3 2.2E-12 4.9E-17 104.8 6.1 97 70-177 153-276 (325)
59 KOG1529 Mercaptopyruvate sulfu 99.3 2.3E-11 5E-16 97.1 9.0 132 44-176 115-275 (286)
60 COG5105 MIH1 Mitotic inducer, 98.7 2.9E-08 6.4E-13 80.5 7.0 94 72-176 241-357 (427)
61 COG2603 Predicted ATPase [Gene 97.5 0.00016 3.4E-09 58.5 5.2 98 77-175 5-127 (334)
62 TIGR01244 conserved hypothetic 97.3 0.0019 4.1E-08 46.9 8.3 86 72-162 12-113 (135)
63 PF04273 DUF442: Putative phos 97.3 0.0024 5.1E-08 44.9 8.1 76 73-155 13-104 (110)
64 PRK00142 putative rhodanese-re 96.1 0.00077 1.7E-08 55.8 -1.7 83 74-165 15-105 (314)
65 KOG1093 Predicted protein kina 96.1 0.0021 4.5E-08 56.5 0.9 95 70-175 619-719 (725)
66 KOG3636 Uncharacterized conser 94.9 0.056 1.2E-06 46.6 5.2 82 88-175 327-427 (669)
67 smart00195 DSPc Dual specifici 94.1 0.17 3.8E-06 36.2 5.7 79 80-162 19-107 (138)
68 PF13350 Y_phosphatase3: Tyros 93.9 0.62 1.3E-05 34.6 8.5 94 70-163 25-153 (164)
69 KOG1717 Dual specificity phosp 93.8 0.023 4.9E-07 45.8 0.7 99 74-177 5-124 (343)
70 TIGR03167 tRNA_sel_U_synt tRNA 93.8 0.28 6.1E-06 40.7 7.1 95 46-149 102-208 (311)
71 cd00127 DSPc Dual specificity 93.2 0.29 6.3E-06 34.8 5.7 82 80-161 20-109 (139)
72 COG3453 Uncharacterized protei 92.2 1.1 2.4E-05 31.9 7.1 83 70-158 11-108 (130)
73 PLN02727 NAD kinase 90.8 1.1 2.4E-05 42.2 7.6 83 71-158 265-364 (986)
74 PF00782 DSPc: Dual specificit 88.8 1.1 2.3E-05 31.7 4.9 80 83-162 14-102 (133)
75 PF05706 CDKN3: Cyclin-depende 87.0 1.6 3.5E-05 32.8 5.0 82 79-160 63-159 (168)
76 PRK07688 thiamine/molybdopteri 87.0 0.92 2E-05 38.0 4.1 82 22-107 219-317 (339)
77 COG2453 CDC14 Predicted protei 85.2 1.4 2.9E-05 33.5 3.9 29 134-162 102-134 (180)
78 PRK12361 hypothetical protein; 81.7 2.9 6.3E-05 37.2 5.1 72 77-152 110-191 (547)
79 PF03853 YjeF_N: YjeF-related 79.6 5.8 0.00013 29.7 5.5 31 135-166 23-57 (169)
80 PF09992 DUF2233: Predicted pe 78.9 2.1 4.5E-05 31.8 2.9 39 135-173 98-142 (170)
81 PTZ00242 protein tyrosine phos 78.2 13 0.00029 27.7 7.0 69 79-152 32-114 (166)
82 PTZ00393 protein tyrosine phos 73.8 8.9 0.00019 30.6 5.2 78 80-162 109-198 (241)
83 PRK11784 tRNA 2-selenouridine 72.4 14 0.0003 31.2 6.3 61 46-106 116-187 (345)
84 TIGR00197 yjeF_nterm yjeF N-te 72.1 11 0.00025 29.1 5.4 33 134-167 42-78 (205)
85 PLN03050 pyridoxine (pyridoxam 71.8 6.3 0.00014 31.5 4.0 29 138-167 61-93 (246)
86 COG0062 Uncharacterized conser 69.0 18 0.00038 28.2 5.8 28 137-165 49-80 (203)
87 PRK10565 putative carbohydrate 69.0 13 0.00028 33.0 5.7 33 134-167 57-93 (508)
88 PLN03049 pyridoxine (pyridoxam 68.4 13 0.00028 32.6 5.5 29 138-167 60-92 (462)
89 PLN02918 pyridoxine (pyridoxam 66.6 15 0.00032 33.0 5.5 29 138-167 136-168 (544)
90 TIGR02689 ars_reduc_gluta arse 65.6 11 0.00024 26.5 3.9 35 138-172 1-37 (126)
91 PF03162 Y_phosphatase2: Tyros 63.3 15 0.00032 27.5 4.3 40 123-162 75-119 (164)
92 PF02590 SPOUT_MTase: Predicte 59.6 23 0.0005 26.2 4.7 47 128-174 58-110 (155)
93 PRK13802 bifunctional indole-3 58.5 34 0.00074 31.7 6.5 87 76-164 145-237 (695)
94 TIGR00853 pts-lac PTS system, 56.5 17 0.00037 24.5 3.3 36 137-173 3-43 (95)
95 PRK13530 arsenate reductase; P 55.7 20 0.00044 25.6 3.8 36 137-172 3-40 (133)
96 PRK00103 rRNA large subunit me 55.2 29 0.00062 25.8 4.6 48 128-175 58-111 (157)
97 PLN02460 indole-3-glycerol-pho 55.1 57 0.0012 27.5 6.8 88 76-164 215-314 (338)
98 COG0394 Wzb Protein-tyrosine-p 53.6 16 0.00035 26.5 3.0 36 138-173 3-40 (139)
99 PF00218 IGPS: Indole-3-glycer 53.3 8.2 0.00018 31.1 1.5 89 74-164 141-235 (254)
100 PRK11391 etp phosphotyrosine-p 53.2 18 0.00038 26.3 3.2 36 138-174 3-40 (144)
101 TIGR01587 cas3_core CRISPR-ass 52.1 32 0.00069 28.5 5.0 47 125-171 210-258 (358)
102 KOG0333 U5 snRNP-like RNA heli 51.7 32 0.0007 30.9 4.9 44 127-171 505-551 (673)
103 PF03610 EIIA-man: PTS system 51.7 65 0.0014 22.1 5.8 45 125-169 45-90 (116)
104 PRK08762 molybdopterin biosynt 51.6 20 0.00044 30.3 3.8 38 136-174 134-172 (376)
105 COG2519 GCD14 tRNA(1-methylade 50.6 41 0.00089 27.1 5.1 46 120-165 171-217 (256)
106 PRK09590 celB cellobiose phosp 49.0 24 0.00052 24.3 3.1 35 138-173 2-41 (104)
107 cd05565 PTS_IIB_lactose PTS_II 48.9 20 0.00044 24.4 2.7 35 139-174 2-41 (99)
108 COG1576 Uncharacterized conser 47.7 65 0.0014 24.0 5.4 47 127-174 57-109 (155)
109 COG0134 TrpC Indole-3-glycerol 47.5 71 0.0015 25.8 6.0 87 75-163 140-232 (254)
110 cd00079 HELICc Helicase superf 47.4 74 0.0016 21.4 5.6 35 136-171 27-62 (131)
111 PTZ00110 helicase; Provisional 47.0 41 0.0009 30.0 5.1 44 127-171 366-411 (545)
112 PRK12898 secA preprotein trans 47.0 79 0.0017 29.2 6.9 35 136-171 472-507 (656)
113 PRK13957 indole-3-glycerol-pho 46.2 80 0.0017 25.4 6.1 86 76-164 136-227 (247)
114 TIGR03372 putres_am_tran putre 45.7 39 0.00084 29.4 4.6 42 134-175 130-177 (442)
115 COG2185 Sbm Methylmalonyl-CoA 45.5 78 0.0017 23.2 5.5 38 134-171 60-102 (143)
116 KOG0352 ATP-dependent DNA heli 45.5 18 0.00039 31.7 2.4 42 139-181 257-308 (641)
117 PF02302 PTS_IIB: PTS system, 45.0 29 0.00063 22.4 3.0 24 139-162 1-30 (90)
118 COG0513 SrmB Superfamily II DN 44.4 47 0.001 29.5 5.0 34 138-172 274-308 (513)
119 COG1891 Uncharacterized protei 43.5 54 0.0012 25.2 4.5 26 73-98 6-31 (235)
120 cd05564 PTS_IIB_chitobiose_lic 43.4 29 0.00064 23.3 2.9 34 139-173 1-39 (96)
121 COG0034 PurF Glutamine phospho 43.3 34 0.00074 30.0 3.8 34 136-169 347-384 (470)
122 TIGR02691 arsC_pI258_fam arsen 42.3 33 0.00071 24.4 3.1 32 140-171 1-34 (129)
123 PRK10310 PTS system galactitol 42.2 88 0.0019 20.9 5.1 36 138-174 3-44 (94)
124 PRK10499 PTS system N,N'-diace 41.3 37 0.0008 23.4 3.1 20 138-157 4-23 (106)
125 COG2518 Pcm Protein-L-isoaspar 40.9 28 0.0006 27.3 2.7 38 140-177 97-136 (209)
126 KOG0572 Glutamine phosphoribos 40.8 39 0.00084 29.1 3.7 52 115-166 326-389 (474)
127 TIGR00614 recQ_fam ATP-depende 40.6 55 0.0012 28.5 4.8 36 136-172 225-261 (470)
128 TIGR00201 comF comF family pro 40.2 48 0.001 25.1 3.9 32 136-167 151-186 (190)
129 TIGR00824 EIIA-man PTS system, 40.1 92 0.002 21.6 5.1 44 125-169 46-91 (116)
130 PF01488 Shikimate_DH: Shikima 39.9 52 0.0011 23.3 3.9 35 136-171 11-46 (135)
131 PRK08117 4-aminobutyrate amino 38.6 63 0.0014 27.8 4.8 44 132-175 97-143 (433)
132 PRK06148 hypothetical protein; 38.4 56 0.0012 31.7 4.9 43 134-176 676-721 (1013)
133 PRK05298 excinuclease ABC subu 38.3 59 0.0013 29.8 4.8 46 126-172 435-481 (652)
134 cd05567 PTS_IIB_mannitol PTS_I 38.3 35 0.00076 22.2 2.6 14 138-151 1-14 (87)
135 PRK04837 ATP-dependent RNA hel 37.2 49 0.0011 28.2 4.0 35 136-171 254-289 (423)
136 PRK00278 trpC indole-3-glycero 35.8 1.9E+02 0.004 23.2 6.8 75 88-164 162-237 (260)
137 PRK11776 ATP-dependent RNA hel 35.7 77 0.0017 27.4 4.9 35 137-172 242-277 (460)
138 KOG0331 ATP-dependent RNA heli 35.2 75 0.0016 28.4 4.8 35 136-171 340-375 (519)
139 cd00133 PTS_IIB PTS_IIB: subun 34.9 51 0.0011 20.3 2.9 20 139-158 1-21 (84)
140 PRK11192 ATP-dependent RNA hel 34.6 62 0.0013 27.7 4.2 35 136-171 244-279 (434)
141 PRK04537 ATP-dependent RNA hel 34.3 53 0.0012 29.6 3.8 35 136-171 256-291 (572)
142 KOG4166 Thiamine pyrophosphate 33.8 1.3E+02 0.0027 26.6 5.7 62 87-148 242-309 (675)
143 TIGR00640 acid_CoA_mut_C methy 33.1 1.8E+02 0.0039 20.7 7.1 16 79-94 21-37 (132)
144 KOG0330 ATP-dependent RNA heli 32.5 81 0.0018 27.4 4.3 43 127-171 291-334 (476)
145 KOG0685 Flavin-containing amin 32.3 78 0.0017 28.0 4.3 34 136-170 20-54 (498)
146 smart00012 PTPc_DSPc Protein t 32.2 1E+02 0.0022 19.8 4.2 17 136-152 38-55 (105)
147 smart00404 PTPc_motif Protein 32.2 1E+02 0.0022 19.8 4.2 17 136-152 38-55 (105)
148 TIGR00631 uvrb excinuclease AB 32.1 95 0.0021 28.6 5.1 46 125-171 430-476 (655)
149 COG0514 RecQ Superfamily II DN 31.8 40 0.00088 30.6 2.6 36 136-172 229-265 (590)
150 PRK11057 ATP-dependent DNA hel 31.7 60 0.0013 29.4 3.7 36 136-172 235-271 (607)
151 PF13344 Hydrolase_6: Haloacid 31.5 1.3E+02 0.0028 20.2 4.6 35 125-162 21-57 (101)
152 PRK14994 SAM-dependent 16S rib 31.5 2.9E+02 0.0062 22.6 7.4 103 70-180 22-135 (287)
153 COG4822 CbiK Cobalamin biosynt 31.3 1.8E+02 0.0038 23.2 5.7 42 125-166 122-172 (265)
154 PF07755 DUF1611: Protein of u 31.1 88 0.0019 25.9 4.3 33 144-177 122-157 (301)
155 PRK05639 4-aminobutyrate amino 31.1 89 0.0019 27.3 4.6 37 139-175 114-153 (457)
156 PLN03137 ATP-dependent DNA hel 30.7 89 0.0019 30.9 4.8 35 137-172 680-715 (1195)
157 COG1204 Superfamily II helicas 30.7 1.7E+02 0.0036 27.6 6.5 83 76-158 192-274 (766)
158 TIGR01389 recQ ATP-dependent D 30.2 96 0.0021 27.9 4.8 35 137-172 224-259 (591)
159 TIGR00246 tRNA_RlmH_YbeA rRNA 29.9 1E+02 0.0022 22.8 4.1 46 128-175 57-108 (153)
160 cd05563 PTS_IIB_ascorbate PTS_ 29.8 68 0.0015 20.5 2.9 19 139-157 1-20 (86)
161 PRK06918 4-aminobutyrate amino 29.7 1.1E+02 0.0025 26.4 5.0 38 139-176 116-156 (451)
162 PRK00615 glutamate-1-semialdeh 29.6 93 0.002 27.0 4.4 49 127-175 99-150 (433)
163 PLN02347 GMP synthetase 29.5 1.2E+02 0.0026 27.2 5.2 44 128-172 220-267 (536)
164 PRK10590 ATP-dependent RNA hel 29.4 75 0.0016 27.6 3.8 35 136-171 244-279 (456)
165 PRK09162 hypoxanthine-guanine 29.1 94 0.002 23.4 3.9 32 136-167 96-131 (181)
166 cd05566 PTS_IIB_galactitol PTS 28.8 82 0.0018 20.3 3.2 20 138-157 1-21 (89)
167 KOG1716 Dual specificity phosp 28.3 1.1E+02 0.0025 24.7 4.5 29 134-162 152-184 (285)
168 PRK08593 4-aminobutyrate amino 28.0 1.1E+02 0.0024 26.5 4.7 37 139-175 104-143 (445)
169 COG4992 ArgD Ornithine/acetylo 27.8 1E+02 0.0023 26.6 4.3 47 125-171 87-139 (404)
170 PRK04914 ATP-dependent helicas 27.7 1E+02 0.0022 29.8 4.7 36 136-172 492-529 (956)
171 PRK06149 hypothetical protein; 27.6 98 0.0021 29.9 4.6 42 134-175 637-681 (972)
172 PRK06917 hypothetical protein; 27.6 1.2E+02 0.0025 26.4 4.7 46 130-175 83-137 (447)
173 PRK07199 phosphoribosylpyropho 27.6 97 0.0021 25.5 4.0 31 136-166 210-244 (301)
174 PF14572 Pribosyl_synth: Phosp 27.4 84 0.0018 24.1 3.3 31 137-167 83-117 (184)
175 PRK11018 hypothetical protein; 27.2 1.7E+02 0.0038 18.7 5.5 37 126-162 24-61 (78)
176 PF08503 DapH_N: Tetrahydrodip 27.2 17 0.00038 24.0 -0.4 51 125-176 4-55 (83)
177 PF00156 Pribosyltran: Phospho 27.1 1E+02 0.0022 20.9 3.6 30 136-165 87-120 (125)
178 PRK06062 hypothetical protein; 27.1 1.1E+02 0.0025 26.5 4.6 42 134-175 108-152 (451)
179 PRK05964 adenosylmethionine--8 27.1 1.2E+02 0.0026 25.9 4.7 42 134-175 98-148 (423)
180 COG3414 SgaB Phosphotransferas 27.0 1E+02 0.0022 20.8 3.3 25 138-162 2-32 (93)
181 PRK08360 4-aminobutyrate amino 26.9 1.2E+02 0.0027 26.2 4.7 47 129-175 92-141 (443)
182 PLN00197 beta-amylase; Provisi 26.8 93 0.002 28.0 3.9 51 101-169 190-241 (573)
183 PRK13809 orotate phosphoribosy 26.4 1.8E+02 0.0038 22.6 5.1 48 134-181 115-172 (206)
184 PF10652 DUF2480: Protein of u 26.3 2.8E+02 0.0061 20.9 5.8 73 80-157 6-82 (167)
185 KOG0332 ATP-dependent RNA heli 26.1 74 0.0016 27.5 3.0 34 139-173 332-366 (477)
186 PRK00919 GMP synthase subunit 26.1 1.6E+02 0.0035 24.4 5.0 37 133-171 18-58 (307)
187 cd05568 PTS_IIB_bgl_like PTS_I 26.1 1E+02 0.0022 19.4 3.2 20 139-158 2-22 (85)
188 PRK09246 amidophosphoribosyltr 26.0 1E+02 0.0022 27.4 4.1 33 136-168 357-393 (501)
189 TIGR03158 cas3_cyano CRISPR-as 25.6 1.7E+02 0.0037 24.5 5.2 38 136-173 271-310 (357)
190 TIGR00709 dat 2,4-diaminobutyr 25.5 1.3E+02 0.0029 26.0 4.7 38 138-175 102-142 (442)
191 PRK04923 ribose-phosphate pyro 25.5 1.2E+02 0.0026 25.3 4.2 31 136-166 216-250 (319)
192 PF13399 LytR_C: LytR cell env 25.4 1.4E+02 0.003 19.3 3.8 26 138-163 4-32 (90)
193 cd02071 MM_CoA_mut_B12_BD meth 25.3 1.4E+02 0.003 20.7 4.0 10 86-95 26-35 (122)
194 COG1157 FliI Flagellar biosynt 25.2 1.9E+02 0.0042 25.3 5.4 53 124-177 205-268 (441)
195 PRK03092 ribose-phosphate pyro 25.2 1.8E+02 0.0039 23.9 5.2 33 136-168 200-236 (304)
196 PF00899 ThiF: ThiF family; I 25.2 1.1E+02 0.0023 21.5 3.5 38 138-176 3-41 (135)
197 PRK06781 amidophosphoribosyltr 25.1 1.1E+02 0.0024 26.9 4.1 34 136-169 347-384 (471)
198 PF02780 Transketolase_C: Tran 25.0 1.2E+02 0.0025 21.0 3.6 28 135-162 7-37 (124)
199 PRK01297 ATP-dependent RNA hel 25.0 1E+02 0.0022 26.8 3.9 35 137-172 335-370 (475)
200 PF07879 PHB_acc_N: PHB/PHA ac 24.8 99 0.0021 19.4 2.7 30 69-98 14-45 (64)
201 PRK06082 4-aminobutyrate amino 24.7 1.4E+02 0.0031 26.0 4.8 42 134-175 126-170 (459)
202 PLN02482 glutamate-1-semialdeh 24.7 1.4E+02 0.003 26.3 4.6 38 138-175 155-195 (474)
203 TIGR00537 hemK_rel_arch HemK-r 24.7 1.5E+02 0.0033 21.7 4.4 46 126-171 122-168 (179)
204 TIGR02804 ExbD_2 TonB system t 24.6 2.5E+02 0.0053 19.5 6.2 43 125-167 72-118 (121)
205 PLN02803 beta-amylase 24.3 1E+02 0.0023 27.6 3.8 51 101-169 170-221 (548)
206 PF02879 PGM_PMM_II: Phosphogl 24.3 1.6E+02 0.0035 19.5 4.1 28 137-164 21-49 (104)
207 PRK11595 DNA utilization prote 24.0 1.3E+02 0.0028 23.5 4.0 32 136-167 186-221 (227)
208 PRK00121 trmB tRNA (guanine-N( 24.0 2E+02 0.0044 21.8 5.0 47 124-171 136-183 (202)
209 TIGR00700 GABAtrnsam 4-aminobu 23.6 1.6E+02 0.0035 25.1 4.9 37 139-175 95-134 (420)
210 PRK09427 bifunctional indole-3 23.6 2.6E+02 0.0056 24.6 6.0 87 76-164 144-235 (454)
211 PF00289 CPSase_L_chain: Carba 23.5 90 0.0019 21.6 2.7 27 141-167 5-32 (110)
212 PRK05769 4-aminobutyrate amino 23.4 1.8E+02 0.0039 25.2 5.1 37 139-175 116-155 (441)
213 PRK06916 adenosylmethionine--8 23.3 1.5E+02 0.0032 25.8 4.6 44 132-175 110-162 (460)
214 COG0462 PrsA Phosphoribosylpyr 23.2 1.5E+02 0.0032 24.8 4.3 30 137-166 214-247 (314)
215 PRK09426 methylmalonyl-CoA mut 23.1 2.3E+02 0.0049 26.5 5.9 37 135-171 631-672 (714)
216 PTZ00424 helicase 45; Provisio 22.9 1.2E+02 0.0027 25.3 3.9 35 137-172 267-302 (401)
217 COG1440 CelA Phosphotransferas 22.8 1E+02 0.0023 21.2 2.8 21 138-158 2-22 (102)
218 PRK02458 ribose-phosphate pyro 22.7 1.4E+02 0.003 24.9 4.1 31 136-166 217-251 (323)
219 PF02863 Arg_repressor_C: Argi 22.6 1.4E+02 0.0031 18.6 3.3 25 134-158 44-68 (70)
220 PLN02801 beta-amylase 22.5 1.4E+02 0.003 26.7 4.1 51 101-169 100-151 (517)
221 COG1606 ATP-utilizing enzymes 22.4 1.9E+02 0.0042 23.5 4.6 40 125-165 5-46 (269)
222 PRK07986 adenosylmethionine--8 22.2 1.5E+02 0.0033 25.6 4.4 42 134-175 99-148 (428)
223 KOG2978 Dolichol-phosphate man 22.2 2E+02 0.0044 22.5 4.5 41 127-167 25-68 (238)
224 COG2085 Predicted dinucleotide 22.0 4E+02 0.0086 20.9 7.4 26 137-162 147-174 (211)
225 KOG2585 Uncharacterized conser 21.9 1.1E+02 0.0024 26.7 3.4 28 140-167 269-300 (453)
226 PRK07481 hypothetical protein; 21.9 1.6E+02 0.0034 25.6 4.4 39 138-176 104-151 (449)
227 PRK06541 hypothetical protein; 21.8 1.7E+02 0.0037 25.5 4.6 42 134-175 108-158 (460)
228 PRK09694 helicase Cas3; Provis 21.6 2E+02 0.0043 27.6 5.3 49 124-172 547-598 (878)
229 PRK07631 amidophosphoribosyltr 21.5 1.3E+02 0.0028 26.6 3.9 33 136-168 347-383 (475)
230 PRK07495 4-aminobutyrate amino 21.5 1.9E+02 0.0041 24.9 4.8 37 139-175 102-141 (425)
231 PRK07482 hypothetical protein; 21.5 1.8E+02 0.0039 25.4 4.7 47 129-175 102-157 (461)
232 PRK08341 amidophosphoribosyltr 21.4 1.4E+02 0.003 26.2 3.9 32 136-167 333-368 (442)
233 TIGR00342 thiazole biosynthesi 21.3 1.4E+02 0.0029 25.4 3.8 27 136-162 171-198 (371)
234 PF04122 CW_binding_2: Putativ 21.3 1.1E+02 0.0023 20.0 2.6 34 136-172 49-83 (92)
235 PRK06777 4-aminobutyrate amino 21.2 1.8E+02 0.0038 25.0 4.6 37 139-175 102-141 (421)
236 PF12146 Hydrolase_4: Putative 21.2 2.2E+02 0.0047 18.2 4.0 30 138-168 16-50 (79)
237 PRK05965 hypothetical protein; 21.2 1.7E+02 0.0038 25.4 4.6 48 128-175 97-153 (459)
238 PRK07036 hypothetical protein; 21.1 1.6E+02 0.0035 25.7 4.4 42 134-175 108-158 (466)
239 PF02254 TrkA_N: TrkA-N domain 21.0 1.4E+02 0.0031 19.9 3.4 20 138-161 22-42 (116)
240 PF01206 TusA: Sulfurtransfera 20.9 2.1E+02 0.0046 17.4 4.2 38 125-162 15-53 (70)
241 COG1040 ComFC Predicted amidop 20.8 1.5E+02 0.0032 23.3 3.7 30 138-167 185-218 (225)
242 PRK02269 ribose-phosphate pyro 20.8 1.5E+02 0.0033 24.6 3.9 30 136-165 216-249 (320)
243 PRK07349 amidophosphoribosyltr 20.7 1.5E+02 0.0032 26.4 4.0 32 136-167 376-411 (500)
244 KOG1403 Predicted alanine-glyo 20.5 2.1E+02 0.0045 24.1 4.5 42 130-172 95-139 (452)
245 PRK13104 secA preprotein trans 20.5 1.7E+02 0.0036 28.2 4.5 39 135-174 442-481 (896)
246 COG0462 PrsA Phosphoribosylpyr 20.3 4E+02 0.0088 22.3 6.2 78 70-158 103-186 (314)
247 PRK07678 aminotransferase; Val 20.1 1.6E+02 0.0034 25.7 4.1 37 139-175 106-151 (451)
No 1
>PLN02160 thiosulfate sulfurtransferase
Probab=99.92 E-value=1.1e-24 Score=159.09 Aligned_cols=113 Identities=44% Similarity=0.806 Sum_probs=94.5
Q ss_pred CCcccCHHHHHHHHhCCCEEEEcCChhhHhccCCCCc--eecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCch
Q 030104 71 VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA--INVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK 148 (183)
Q Consensus 71 ~~~~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgA--vnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~ 148 (183)
....++++++.++++++.+|||||++.||..|||||| +|+|+..........+.+++......++++++||+||++|.
T Consensus 13 ~~~~i~~~e~~~~~~~~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~~l~~~~~~~~~~~~~~~~~~IivyC~sG~ 92 (136)
T PLN02160 13 EVVSVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSSLLNPADDILVGCQSGA 92 (136)
T ss_pred eeeEeCHHHHHHHHhCCCEEEECCCHHHHhcCCCCCcceecccchhcCcccccCCHHHHHHHHhccCCCCcEEEECCCcH
Confidence 3567889999998887788999999999999999999 89997543323333445555555444678899999999999
Q ss_pred HHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCCC
Q 030104 149 RSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTEP 183 (183)
Q Consensus 149 ~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~~ 183 (183)
||..++..|. .||++|++|.||+.+|.++|+|+.+
T Consensus 93 RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~ 128 (136)
T PLN02160 93 RSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQ 128 (136)
T ss_pred HHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccc
Confidence 9999999999 9999999999999999999999863
No 2
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.6e-24 Score=153.11 Aligned_cols=114 Identities=40% Similarity=0.697 Sum_probs=103.1
Q ss_pred CCCCcccCHHHHHHHHhCC-CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCC-CCeEEEEcCC
Q 030104 69 VGVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRK-HDEIIVGCQS 146 (183)
Q Consensus 69 ~~~~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ivv~c~~ 146 (183)
.+.+..++.++++.+.+.+ +++||||+++||..||+|.++|||+...-+.+...+++|++......++ ++.|||+|.+
T Consensus 19 ~~~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiIf~C~S 98 (136)
T KOG1530|consen 19 ASNPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEIIFGCAS 98 (136)
T ss_pred cCCcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcceEeccccccccccccCCHHHHHHhcccCCCCCCcEEEEecc
Confidence 3567789999999999988 9999999999999999999999999766677888899999988776654 5699999999
Q ss_pred chHHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCC
Q 030104 147 GKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTE 182 (183)
Q Consensus 147 g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~ 182 (183)
|.||..|...|. .||+||.++.|||.+|.+.++|..
T Consensus 99 G~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~ 135 (136)
T KOG1530|consen 99 GVRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK 135 (136)
T ss_pred CcchhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence 999999999999 999999999999999999998864
No 3
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.91 E-value=5.5e-24 Score=149.62 Aligned_cols=98 Identities=22% Similarity=0.362 Sum_probs=83.4
Q ss_pred CCCCcccCHHHHHHHHhCC--CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcC--CCCCeEEEEc
Q 030104 69 VGVPTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGC 144 (183)
Q Consensus 69 ~~~~~~i~~~~~~~~~~~~--~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l--~~~~~ivv~c 144 (183)
......++++++.++++.+ .+|||||++.||..||||||+|+|+ ..+......+ +++++|||||
T Consensus 6 ~~~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~------------~~l~~~~~~l~~~~~~~ivv~C 73 (109)
T cd01533 6 VRHTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPG------------AELVLRVGELAPDPRTPIVVNC 73 (109)
T ss_pred cccCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCH------------HHHHHHHHhcCCCCCCeEEEEC
Confidence 3455678999999888754 6899999999999999999999998 3444444444 4578999999
Q ss_pred CCchHHHHHHHHHH-cCCCC-eeEccccHHHhhhCC
Q 030104 145 QSGKRSMMAATDLL-NGFAG-ITDIAGGFAAWRQNG 178 (183)
Q Consensus 145 ~~g~~s~~a~~~L~-~G~~~-v~~l~GG~~~W~~~g 178 (183)
.+|.||..+++.|+ .||++ |++|+||+.+|..+|
T Consensus 74 ~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 74 AGRTRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred CCCchHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 99999999999999 99988 999999999999875
No 4
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.91 E-value=6.7e-24 Score=146.54 Aligned_cols=97 Identities=31% Similarity=0.487 Sum_probs=84.9
Q ss_pred cccCHHHHHHHHhCCCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHHHH
Q 030104 73 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM 152 (183)
Q Consensus 73 ~~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~~ 152 (183)
..++++++.++++.+.+|||+|++++|..||||||+|+|+. .+......++++++||+||++|.++..
T Consensus 2 ~~i~~~el~~~~~~~~~liDvR~~~e~~~~hi~ga~~ip~~------------~~~~~~~~~~~~~~iv~~c~~g~~s~~ 69 (99)
T cd01527 2 TTISPNDACELLAQGAVLVDIREPDEYLRERIPGARLVPLS------------QLESEGLPLVGANAIIFHCRSGMRTQQ 69 (99)
T ss_pred CccCHHHHHHHHHCCCEEEECCCHHHHHhCcCCCCEECChh------------HhcccccCCCCCCcEEEEeCCCchHHH
Confidence 46789999988887899999999999999999999999984 222222346788999999999999999
Q ss_pred HHHHHH-cCCCCeeEccccHHHhhhCCCCC
Q 030104 153 AATDLL-NGFAGITDIAGGFAAWRQNGLPT 181 (183)
Q Consensus 153 a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv 181 (183)
++..|. .||++|++|+||+.+|...|+|+
T Consensus 70 ~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 70 NAERLAAISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred HHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence 999999 99999999999999999999875
No 5
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.90 E-value=2.5e-23 Score=146.07 Aligned_cols=100 Identities=32% Similarity=0.497 Sum_probs=88.6
Q ss_pred CCcccCHHHHHHHHhC-CCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchH
Q 030104 71 VPTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR 149 (183)
Q Consensus 71 ~~~~i~~~~~~~~~~~-~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~ 149 (183)
..+.++++++.+++++ +.++||||++.||..||||||+|+|+ ..+......++++++|+|||.+|.+
T Consensus 3 ~~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA~~ip~------------~~l~~~~~~~~~~~~ivv~c~~g~~ 70 (108)
T PRK00162 3 QFECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHLTN------------DSLGAFMRQADFDTPVMVMCYHGNS 70 (108)
T ss_pred CccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCCeECCH------------HHHHHHHHhcCCCCCEEEEeCCCCC
Confidence 3467889999988854 48999999999999999999999998 4455555667889999999999999
Q ss_pred HHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCC
Q 030104 150 SMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTE 182 (183)
Q Consensus 150 s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~ 182 (183)
|..++..|+ .||++|++|+||+.+|.+.+.|++
T Consensus 71 s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~ 104 (108)
T PRK00162 71 SQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEV 104 (108)
T ss_pred HHHHHHHHHHCCchheEEecCCHHHHHhcCCCcc
Confidence 999999999 999999999999999999999876
No 6
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.90 E-value=6.3e-24 Score=147.33 Aligned_cols=98 Identities=26% Similarity=0.346 Sum_probs=78.6
Q ss_pred cccCHHHHHHHHhCC-CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHHH
Q 030104 73 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSM 151 (183)
Q Consensus 73 ~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~ 151 (183)
..++++++.++++++ .+|||||++.||..||||||+|+|+..+. .....+... ..++++++|||||++|.||.
T Consensus 2 ~~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~-----~~~~~~~~~-~~~~~~~~ivvyC~~G~rs~ 75 (101)
T cd01518 2 TYLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDVDTFR-----EFPFWLDEN-LDLLKGKKVLMYCTGGIRCE 75 (101)
T ss_pred CcCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccccCCCcccHh-----HhHHHHHhh-hhhcCCCEEEEECCCchhHH
Confidence 357888998887654 89999999999999999999999985211 001112111 12368899999999999999
Q ss_pred HHHHHHH-cCCCCeeEccccHHHhhh
Q 030104 152 MAATDLL-NGFAGITDIAGGFAAWRQ 176 (183)
Q Consensus 152 ~a~~~L~-~G~~~v~~l~GG~~~W~~ 176 (183)
.+++.|. .||++|++|+||+.+|.+
T Consensus 76 ~a~~~L~~~G~~~v~~l~GG~~~W~~ 101 (101)
T cd01518 76 KASAYLKERGFKNVYQLKGGILKYLE 101 (101)
T ss_pred HHHHHHHHhCCcceeeechhHHHHhC
Confidence 9999999 999999999999999973
No 7
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.89 E-value=1.1e-22 Score=145.90 Aligned_cols=109 Identities=29% Similarity=0.382 Sum_probs=86.3
Q ss_pred CCCCcccCHHHHHHHHhC--CCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHH---HHhcCCCCCeEEEE
Q 030104 69 VGVPTSVPVRVAHELLQA--GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE---VSTRFRKHDEIIVG 143 (183)
Q Consensus 69 ~~~~~~i~~~~~~~~~~~--~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~---~~~~l~~~~~ivv~ 143 (183)
.+....++++++.+++++ +++|||||++.||..||||||+|||+..+... ...+.. ....++++++||+|
T Consensus 4 ~~~~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~-----~~~~~~~~~~~~~~~~~~~ivv~ 78 (122)
T cd01526 4 LSPEERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLSK-----AAELKSLQELPLDNDKDSPIYVV 78 (122)
T ss_pred CCcccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhhh-----hhhhhhhhhcccccCCCCcEEEE
Confidence 456678999999988865 37899999999999999999999998532110 000000 01224778999999
Q ss_pred cCCchHHHHHHHHHH-cCC-CCeeEccccHHHhhhCCCCCC
Q 030104 144 CQSGKRSMMAATDLL-NGF-AGITDIAGGFAAWRQNGLPTE 182 (183)
Q Consensus 144 c~~g~~s~~a~~~L~-~G~-~~v~~l~GG~~~W~~~g~pv~ 182 (183)
|++|.+|..++..|+ .|| ++|++|+||+.+|..+..+..
T Consensus 79 C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~~~ 119 (122)
T cd01526 79 CRRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDPTF 119 (122)
T ss_pred CCCCCcHHHHHHHHHHcCCccceeeecchHHHHHHHhCccC
Confidence 999999999999999 999 799999999999998876653
No 8
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.89 E-value=1.2e-22 Score=140.56 Aligned_cols=96 Identities=26% Similarity=0.388 Sum_probs=78.0
Q ss_pred cCHHHHHHHHhCC--CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHHHH
Q 030104 75 VPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM 152 (183)
Q Consensus 75 i~~~~~~~~~~~~--~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~~ 152 (183)
|+++++.++++++ .+|||||++.||..||||||+|+|+...... ...........++++++|||||.+|.+|..
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~----~~~~~~~~~~~~~~~~~ivv~C~~G~rs~~ 76 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFD----FLEIEEDILDQLPDDQEVTVICAKEGSSQF 76 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchHH----HHHhhHHHHhhCCCCCeEEEEcCCCCcHHH
Confidence 5778888888764 7999999999999999999999998521100 000113345667889999999999999999
Q ss_pred HHHHHH-cCCCCeeEccccHHHhh
Q 030104 153 AATDLL-NGFAGITDIAGGFAAWR 175 (183)
Q Consensus 153 a~~~L~-~G~~~v~~l~GG~~~W~ 175 (183)
++..|+ .||+ +++|.||+.+|.
T Consensus 77 aa~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 77 VAELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred HHHHHHHcCce-eEEeCCcHHhhc
Confidence 999999 9998 999999999996
No 9
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.88 E-value=2.2e-22 Score=136.81 Aligned_cols=88 Identities=36% Similarity=0.626 Sum_probs=78.5
Q ss_pred cCHHHHHHHHhCCCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHHHHHH
Q 030104 75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAA 154 (183)
Q Consensus 75 i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~~a~ 154 (183)
++++++.+++.++.++||+|++.+|..||||||+|+|. ..+......++++++||+||++|.++..++
T Consensus 1 ~~~~e~~~~~~~~~~iiD~R~~~~~~~~hipgA~~ip~------------~~~~~~~~~~~~~~~vvl~c~~g~~a~~~a 68 (90)
T cd01524 1 VQWHELDNYRADGVTLIDVRTPQEFEKGHIKGAINIPL------------DELRDRLNELPKDKEIIVYCAVGLRGYIAA 68 (90)
T ss_pred CCHHHHHHHhcCCCEEEECCCHHHHhcCCCCCCEeCCH------------HHHHHHHHhcCCCCcEEEEcCCChhHHHHH
Confidence 46788888887778999999999999999999999998 344555556788899999999999999999
Q ss_pred HHHH-cCCCCeeEccccHHHhh
Q 030104 155 TDLL-NGFAGITDIAGGFAAWR 175 (183)
Q Consensus 155 ~~L~-~G~~~v~~l~GG~~~W~ 175 (183)
..|+ .|| ++++|+||+.+|.
T Consensus 69 ~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 69 RILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred HHHHHCCC-CEEEecCCHHHhc
Confidence 9999 999 9999999999996
No 10
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.88 E-value=1.4e-22 Score=146.51 Aligned_cols=101 Identities=29% Similarity=0.480 Sum_probs=78.8
Q ss_pred cCHHHHHHHHhCCCEEEEcCChhhHhccCCCCceecCcccccCCC----CC------------------CCHHHHHHHH-
Q 030104 75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSG----MT------------------KNLKFVEEVS- 131 (183)
Q Consensus 75 i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~----~~------------------~~~~~~~~~~- 131 (183)
|++++++++++++.+|||||++.||..||||||+|||+....... .. ..++++....
T Consensus 1 ~s~~el~~~l~~~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (128)
T cd01520 1 ITAEDLLALRKADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKLKRILNEAWE 80 (128)
T ss_pred CCHHHHHHHHhcCCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 578899988887789999999999999999999999985321100 00 0011222222
Q ss_pred hcCCCCCeEEEEcC-CchHHHHHHHHHH-cCCCCeeEccccHHHhhh
Q 030104 132 TRFRKHDEIIVGCQ-SGKRSMMAATDLL-NGFAGITDIAGGFAAWRQ 176 (183)
Q Consensus 132 ~~l~~~~~ivv~c~-~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~ 176 (183)
..++++++|||||+ +|.||..+++.|+ +|| +|++|+||+.+|..
T Consensus 81 ~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 81 ARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred hccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 35788999999997 6899999999999 999 69999999999975
No 11
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.88 E-value=2.7e-22 Score=141.27 Aligned_cols=97 Identities=27% Similarity=0.485 Sum_probs=83.5
Q ss_pred CcccCHHHHHHHHhCC---CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHH-HHHhcCCCCCeEEEEcCCc
Q 030104 72 PTSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVE-EVSTRFRKHDEIIVGCQSG 147 (183)
Q Consensus 72 ~~~i~~~~~~~~~~~~---~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~-~~~~~l~~~~~ivv~c~~g 147 (183)
...++++++.++++.+ .+|||||++.+|..||||||+|+|.. .+. +....++++++|||||++|
T Consensus 7 ~~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~------------~l~~~~~~~i~~~~~vvvyc~~g 74 (110)
T cd01521 7 AFETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHR------------EICENATAKLDKEKLFVVYCDGP 74 (110)
T ss_pred eeecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHH------------HhhhHhhhcCCCCCeEEEEECCC
Confidence 4568889999888653 79999999999999999999999984 233 4455678899999999987
Q ss_pred h--HHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCC
Q 030104 148 K--RSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPT 181 (183)
Q Consensus 148 ~--~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv 181 (183)
. ++..+++.|+ .||+ +++|+||+.+|..+|+|+
T Consensus 75 ~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 75 GCNGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT 110 (110)
T ss_pred CCchHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence 4 8999999999 9995 999999999999999885
No 12
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.88 E-value=1.4e-22 Score=141.39 Aligned_cols=100 Identities=26% Similarity=0.374 Sum_probs=79.3
Q ss_pred CHHHHHHHHh-C-CCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhc--CCCCCeEEEEcCCchHHH
Q 030104 76 PVRVAHELLQ-A-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSM 151 (183)
Q Consensus 76 ~~~~~~~~~~-~-~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~~s~ 151 (183)
+++++.++++ . +.+|||+|++.||..||||||+|+|+....... ....+.+...+.. ++++++||+||++|.+|.
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~s~ 80 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPDAL-ALSEEEFEKKYGFPKPSKDKELIFYCKAGVRSK 80 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHHhhhhh-CCCHHHHHHHhcccCCCCCCeEEEECCCcHHHH
Confidence 4667777776 4 489999999999999999999999986432221 2223334444432 457889999999999999
Q ss_pred HHHHHHH-cCCCCeeEccccHHHhhh
Q 030104 152 MAATDLL-NGFAGITDIAGGFAAWRQ 176 (183)
Q Consensus 152 ~a~~~L~-~G~~~v~~l~GG~~~W~~ 176 (183)
.+++.|. .||++|++|+||+.+|.+
T Consensus 81 ~~~~~l~~~G~~~v~~~~Gg~~~W~~ 106 (106)
T cd01519 81 AAAELARSLGYENVGNYPGSWLDWAA 106 (106)
T ss_pred HHHHHHHHcCCccceecCCcHHHHcC
Confidence 9999999 999999999999999963
No 13
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.88 E-value=2.9e-22 Score=137.47 Aligned_cols=89 Identities=29% Similarity=0.384 Sum_probs=73.0
Q ss_pred cCHHHHHHHHhCC---CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcC-CCCCeEEEEcCCchHH
Q 030104 75 VPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-RKHDEIIVGCQSGKRS 150 (183)
Q Consensus 75 i~~~~~~~~~~~~---~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l-~~~~~ivv~c~~g~~s 150 (183)
|+++++.++++++ +++||||++.||..||||||+|+|+. ++........ .++++||+||.+|.+|
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~-----------~l~~~~~~~~~~~~~~iv~~c~~G~rs 69 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGG-----------QLVQETDHFAPVRGARIVLADDDGVRA 69 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHH-----------HHHHHHHHhcccCCCeEEEECCCCChH
Confidence 5778888887653 67999999999999999999999984 2222211112 2467999999999999
Q ss_pred HHHHHHHH-cCCCCeeEccccHHHhh
Q 030104 151 MMAATDLL-NGFAGITDIAGGFAAWR 175 (183)
Q Consensus 151 ~~a~~~L~-~G~~~v~~l~GG~~~W~ 175 (183)
..++..|. .||+ |++|+||+.+|.
T Consensus 70 ~~aa~~L~~~G~~-v~~l~GG~~~W~ 94 (95)
T cd01534 70 DMTASWLAQMGWE-VYVLEGGLAAAL 94 (95)
T ss_pred HHHHHHHHHcCCE-EEEecCcHHHhc
Confidence 99999999 9998 999999999996
No 14
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.88 E-value=4.5e-22 Score=137.95 Aligned_cols=91 Identities=32% Similarity=0.551 Sum_probs=77.3
Q ss_pred cCHHHHHHHHhCC---CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcC---CCCCeEEEEcCCch
Q 030104 75 VPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF---RKHDEIIVGCQSGK 148 (183)
Q Consensus 75 i~~~~~~~~~~~~---~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l---~~~~~ivv~c~~g~ 148 (183)
|+++++.++++.+ .+|||+|++.||..+|||||+|+|+. .+......+ +++++||+||++|.
T Consensus 2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~------------~~~~~~~~~~~~~~~~~vv~~c~~g~ 69 (101)
T cd01528 2 ISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMS------------EIPERSKELDSDNPDKDIVVLCHHGG 69 (101)
T ss_pred CCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHH------------HHHHHHHHhcccCCCCeEEEEeCCCc
Confidence 6788888887754 78999999999999999999999983 222333333 35889999999999
Q ss_pred HHHHHHHHHH-cCCCCeeEccccHHHhhhC
Q 030104 149 RSMMAATDLL-NGFAGITDIAGGFAAWRQN 177 (183)
Q Consensus 149 ~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~ 177 (183)
+|..++..|. .||++|++|+||+.+|.+.
T Consensus 70 rs~~~~~~l~~~G~~~v~~l~GG~~~w~~~ 99 (101)
T cd01528 70 RSMQVAQWLLRQGFENVYNLQGGIDAWSLE 99 (101)
T ss_pred hHHHHHHHHHHcCCccEEEecCCHHHHhhh
Confidence 9999999999 9999999999999999864
No 15
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.87 E-value=7.6e-22 Score=135.16 Aligned_cols=89 Identities=34% Similarity=0.591 Sum_probs=79.5
Q ss_pred cCHHHHHHHHhC--CCEEEEcCChhhHhc--cCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHH
Q 030104 75 VPVRVAHELLQA--GHRYLDVRTPEEFSA--GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150 (183)
Q Consensus 75 i~~~~~~~~~~~--~~~lIDvR~~~e~~~--ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s 150 (183)
++++++.+++++ +++|||+|++.+|.. ||||||+|+|+ ..+......++++++|||||.+|.++
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~------------~~~~~~~~~~~~~~~ivv~c~~g~~s 69 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDE------------DSLDDWLGDLDRDRPVVVYCYHGNSS 69 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCH------------HHHHHHHhhcCCCCCEEEEeCCCChH
Confidence 677888888776 389999999999999 99999999998 34555556688999999999999999
Q ss_pred HHHHHHHH-cCCCCeeEccccHHHhh
Q 030104 151 MMAATDLL-NGFAGITDIAGGFAAWR 175 (183)
Q Consensus 151 ~~a~~~L~-~G~~~v~~l~GG~~~W~ 175 (183)
..+++.|. .||++|++|+||+.+|.
T Consensus 70 ~~a~~~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 70 AQLAQALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred HHHHHHHHHcCCceEEEcCCCHHHhc
Confidence 99999999 99999999999999996
No 16
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.87 E-value=7e-22 Score=136.92 Aligned_cols=100 Identities=28% Similarity=0.433 Sum_probs=76.8
Q ss_pred cCHHHHHHHHhC-CCEEEEcCChhhH-hccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHHHH
Q 030104 75 VPVRVAHELLQA-GHRYLDVRTPEEF-SAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM 152 (183)
Q Consensus 75 i~~~~~~~~~~~-~~~lIDvR~~~e~-~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~~ 152 (183)
++++++.+++++ +.+|||+|++.+| ..||||||+|+|+..+.. .. .... ......++++++|||||.+|.++..
T Consensus 1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~-~~-~~~~--~~~~~~~~~~~~ivv~c~~g~~s~~ 76 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLEF-WA-DPDS--PYHKPAFAEDKPFVFYCASGWRSAL 76 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCcEEcccchhhh-hc-Cccc--cccccCCCCCCeEEEEcCCCCcHHH
Confidence 567888888774 5899999999998 579999999999742110 00 0000 0001136788999999999999999
Q ss_pred HHHHHH-cCCCCeeEccccHHHhhhCC
Q 030104 153 AATDLL-NGFAGITDIAGGFAAWRQNG 178 (183)
Q Consensus 153 a~~~L~-~G~~~v~~l~GG~~~W~~~g 178 (183)
+++.|. .||++|++|+||+.+|..+|
T Consensus 77 ~~~~l~~~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 77 AGKTLQDMGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred HHHHHHHcChHHhEeecCcHHHHhhcC
Confidence 999999 99999999999999998764
No 17
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.87 E-value=2.6e-21 Score=145.26 Aligned_cols=110 Identities=20% Similarity=0.290 Sum_probs=83.6
Q ss_pred CCCcccCHHHHHHHHhCC-CEEEEcCChh----hHhcc---------CCCCceecCcccccCCCCC-CCHHHHHHHHhc-
Q 030104 70 GVPTSVPVRVAHELLQAG-HRYLDVRTPE----EFSAG---------HATGAINVPYMYRVGSGMT-KNLKFVEEVSTR- 133 (183)
Q Consensus 70 ~~~~~i~~~~~~~~~~~~-~~lIDvR~~~----e~~~g---------hIpgAvnip~~~~~~~~~~-~~~~~~~~~~~~- 133 (183)
.....|+++++.++++++ .+|||||++. ||..| |||||+|+|+... ..+. .....+...+..
T Consensus 33 ~~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~--~~l~~~~~~~~~~~l~~~ 110 (162)
T TIGR03865 33 KGARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGY--GNLAPAWQAYFRRGLERA 110 (162)
T ss_pred CCccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCcEEecccCC--CCCCCchhHHHHHHHHHh
Confidence 345678999999988765 8899999865 45444 9999999996311 1111 111223333322
Q ss_pred --CCCCCeEEEEcCCch-HHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCC
Q 030104 134 --FRKHDEIIVGCQSGK-RSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPT 181 (183)
Q Consensus 134 --l~~~~~ivv~c~~g~-~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv 181 (183)
.+++++||+||.+|. +|..+++.|+ +||++|++|+||+.+|.++|+|+
T Consensus 111 ~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 111 TGGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred cCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence 268899999999997 8999999999 99999999999999999999985
No 18
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.86 E-value=1.3e-21 Score=139.09 Aligned_cols=102 Identities=25% Similarity=0.460 Sum_probs=84.2
Q ss_pred cCHHHHHHHHhCC-CEEEEcCChhhHhc-----------cCCCCceecCcccccCC-CCCCCHHHHHHHHhc--CCCCCe
Q 030104 75 VPVRVAHELLQAG-HRYLDVRTPEEFSA-----------GHATGAINVPYMYRVGS-GMTKNLKFVEEVSTR--FRKHDE 139 (183)
Q Consensus 75 i~~~~~~~~~~~~-~~lIDvR~~~e~~~-----------ghIpgAvnip~~~~~~~-~~~~~~~~~~~~~~~--l~~~~~ 139 (183)
++++++.++++++ ++|||||+..||.. ||||||+|+|+...... +.+.+.+.++..+.. ++++++
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDEDGTFKSPEELRALFAALGITPDKP 80 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCCCCcCCHHHHHHHHHHcCCCCCCC
Confidence 4677888877654 89999999999987 99999999999754422 233455666666655 567899
Q ss_pred EEEEcCCchHHHHHHHHHH-cCCCCeeEccccHHHhhh
Q 030104 140 IIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQ 176 (183)
Q Consensus 140 ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~ 176 (183)
||+||++|.+|.++++.|+ .||+++++|+||+.+|.+
T Consensus 81 iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 118 (118)
T cd01449 81 VIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWGS 118 (118)
T ss_pred EEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhcC
Confidence 9999999999999999999 999999999999999963
No 19
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.86 E-value=2.4e-21 Score=138.57 Aligned_cols=104 Identities=24% Similarity=0.290 Sum_probs=86.5
Q ss_pred cCHHHHHHHHhC-CCEEEEcCCh-------hhHhccCCCCceecCcccccC-----CCCCCCHHHHHHHHhc--CCCCCe
Q 030104 75 VPVRVAHELLQA-GHRYLDVRTP-------EEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--FRKHDE 139 (183)
Q Consensus 75 i~~~~~~~~~~~-~~~lIDvR~~-------~e~~~ghIpgAvnip~~~~~~-----~~~~~~~~~~~~~~~~--l~~~~~ 139 (183)
++++++.++++. +.+|||+|++ .+|..||||||+|+|+..... .+...+.+.+.+.+.. ++++++
T Consensus 2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (122)
T cd01448 2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISNDDT 81 (122)
T ss_pred cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCCCCE
Confidence 678888888876 5889999999 999999999999999865442 2344555566665553 678899
Q ss_pred EEEEcCC-chHHHHHHHHHH-cCCCCeeEccccHHHhhhCC
Q 030104 140 IIVGCQS-GKRSMMAATDLL-NGFAGITDIAGGFAAWRQNG 178 (183)
Q Consensus 140 ivv~c~~-g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g 178 (183)
|||||++ |.++..+++.|+ .||++|++|+||+.+|..+|
T Consensus 82 vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 82 VVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred EEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence 9999999 589999999999 99999999999999998765
No 20
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.86 E-value=3.1e-21 Score=163.27 Aligned_cols=145 Identities=23% Similarity=0.370 Sum_probs=113.9
Q ss_pred ecCCCCCccceeccccCCCccceeEEccCCccccccccccCCccccCCCCcccCHHHHHHHHhCC--CEEEEcCChhhHh
Q 030104 23 LCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAG--HRYLDVRTPEEFS 100 (183)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~lIDvR~~~e~~ 100 (183)
+|-...+|+. .++.++|.|+.+..+. +|..+|...+ +..........+++++++++++++ ++|||||++.||.
T Consensus 242 ~d~~~~~~~~-~~~~~~~~C~~~~~~~--~~~~~c~~~~--~~~~~~~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~ 316 (392)
T PRK07878 242 YDALEMTYRT-IKIRKDPSTPKITELI--DYEAFCGVVS--DEAQQAAAGSTITPRELKEWLDSGKKIALIDVREPVEWD 316 (392)
T ss_pred EECCCCceee-EeeccCCCCCcccccc--cchhhccccc--ccccccCCCCccCHHHHHHHHhCCCCeEEEECCCHHHHh
Confidence 6877777776 6777889998766655 6777774322 111123456789999999988764 6899999999999
Q ss_pred ccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHHHhhhCCC
Q 030104 101 AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGL 179 (183)
Q Consensus 101 ~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~ 179 (183)
.||||||+|+|+..+. ..+....++++++|||||++|.+|..+++.|+ .||++|++|+||+.+|.++..
T Consensus 317 ~ghIpGAinip~~~l~----------~~~~~~~l~~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~ 386 (392)
T PRK07878 317 IVHIPGAQLIPKSEIL----------SGEALAKLPQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVAWAKQVD 386 (392)
T ss_pred cCCCCCCEEcChHHhc----------chhHHhhCCCCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHHHHHHhcC
Confidence 9999999999984211 01234567889999999999999999999999 999999999999999998866
Q ss_pred CCC
Q 030104 180 PTE 182 (183)
Q Consensus 180 pv~ 182 (183)
+..
T Consensus 387 ~~~ 389 (392)
T PRK07878 387 PSL 389 (392)
T ss_pred CCC
Confidence 543
No 21
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.86 E-value=1.4e-21 Score=136.08 Aligned_cols=99 Identities=25% Similarity=0.382 Sum_probs=75.6
Q ss_pred cCHHHHHHHHhC---CCEEEEcCChhhHhccCCCCceecCcccccCC-CCCCCHHHHHHHHhcCCCCCeEEEEcCCchHH
Q 030104 75 VPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS-GMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150 (183)
Q Consensus 75 i~~~~~~~~~~~---~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~-~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s 150 (183)
|+++++++++++ +++|||||++.||..||||||+|+|+...+.. ..........++.. ..+++||+||.+|.+|
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~vv~~c~~g~~s 78 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEGELEQLPTVPRLEN--YKGKIIVIVSHSHKHA 78 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhcccccccccccchHHHHh--hcCCeEEEEeCCCccH
Confidence 578899988875 37899999999999999999999998643311 00000000111111 2478999999999999
Q ss_pred HHHHHHHH-cCCCCeeEccccHHHhh
Q 030104 151 MMAATDLL-NGFAGITDIAGGFAAWR 175 (183)
Q Consensus 151 ~~a~~~L~-~G~~~v~~l~GG~~~W~ 175 (183)
..+++.|. .||++|++|+||+.+|+
T Consensus 79 ~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 79 ALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred HHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 99999999 99999999999999995
No 22
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.86 E-value=2.5e-21 Score=142.91 Aligned_cols=90 Identities=26% Similarity=0.380 Sum_probs=80.3
Q ss_pred HHHHhCC--CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHH
Q 030104 81 HELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL 158 (183)
Q Consensus 81 ~~~~~~~--~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~ 158 (183)
.+++.++ ++|||||++.+|..||||||+|+|. ..+...+..++++.+|||||.+|.+|..+++.|.
T Consensus 3 ~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi~~~~------------~~l~~~l~~l~~~~~vVv~c~~g~~a~~aa~~L~ 70 (145)
T cd01535 3 AAWLGEGGQTAVVDVTASANYVKRHIPGAWWVLR------------AQLAQALEKLPAAERYVLTCGSSLLARFAAADLA 70 (145)
T ss_pred HHHHhCCCCeEEEECCCHHHHHcCCCCCceeCCH------------HHHHHHHHhcCCCCCEEEEeCCChHHHHHHHHHH
Confidence 4444444 7999999999999999999999998 5667777778788999999999999999999999
Q ss_pred -cCCCCeeEccccHHHhhhCCCCCC
Q 030104 159 -NGFAGITDIAGGFAAWRQNGLPTE 182 (183)
Q Consensus 159 -~G~~~v~~l~GG~~~W~~~g~pv~ 182 (183)
.||++|++|+||+.+|..+|+|++
T Consensus 71 ~~G~~~v~~L~GG~~aW~~~g~pl~ 95 (145)
T cd01535 71 ALTVKPVFVLEGGTAAWIAAGLPVE 95 (145)
T ss_pred HcCCcCeEEecCcHHHHHHCCCCcc
Confidence 999999999999999999999986
No 23
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.86 E-value=2.4e-21 Score=138.89 Aligned_cols=91 Identities=27% Similarity=0.386 Sum_probs=76.9
Q ss_pred ccCHHHHHHHHhC-------CCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHh------cCCCCCeE
Q 030104 74 SVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST------RFRKHDEI 140 (183)
Q Consensus 74 ~i~~~~~~~~~~~-------~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~------~l~~~~~i 140 (183)
.|+++++.+++++ +++|||||++.||..||||||+|+|.. +.+..... .++++++|
T Consensus 3 ~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~-----------~~l~~~~~~~~~~~~~~~~~~v 71 (121)
T cd01530 3 RISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTK-----------DELEEFFLDKPGVASKKKRRVL 71 (121)
T ss_pred ccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcH-----------HHHHHHHHHhhcccccCCCCEE
Confidence 5888999888865 378999999999999999999999983 12333221 25788999
Q ss_pred EEEcC-CchHHHHHHHHHH-c------------CCCCeeEccccHHHhh
Q 030104 141 IVGCQ-SGKRSMMAATDLL-N------------GFAGITDIAGGFAAWR 175 (183)
Q Consensus 141 vv~c~-~g~~s~~a~~~L~-~------------G~~~v~~l~GG~~~W~ 175 (183)
||||. +|.||..+++.|+ . ||.+|++|+||+.+|.
T Consensus 72 v~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 72 IFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred EEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 99997 9999999999999 7 9999999999999985
No 24
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.86 E-value=2.4e-21 Score=138.07 Aligned_cols=101 Identities=28% Similarity=0.421 Sum_probs=82.8
Q ss_pred cCHHHHHHHHhC--CCEEEEcCChhhHh-ccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHHH
Q 030104 75 VPVRVAHELLQA--GHRYLDVRTPEEFS-AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSM 151 (183)
Q Consensus 75 i~~~~~~~~~~~--~~~lIDvR~~~e~~-~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~ 151 (183)
|+++++.+++++ +.+|||||++.||. .||||||+|+|+..+... .....+..++...++++++||+||++|.+|.
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~--~~~~~~~~~l~~~~~~~~~ivv~C~~G~rs~ 78 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDM--EINPNFLAELEEKVGKDRPVLLLCRSGNRSI 78 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhcccc--ccCHHHHHHHHhhCCCCCeEEEEcCCCccHH
Confidence 578889888876 48899999999999 999999999998643311 1123444554444578899999999999999
Q ss_pred HHHHHHH-cCCCCeeEccccHHHhhhC
Q 030104 152 MAATDLL-NGFAGITDIAGGFAAWRQN 177 (183)
Q Consensus 152 ~a~~~L~-~G~~~v~~l~GG~~~W~~~ 177 (183)
.++..|+ .||++++.|.||+.+|...
T Consensus 79 ~aa~~L~~~G~~~v~~l~gG~~~~~~~ 105 (117)
T cd01522 79 AAAEAAAQAGFTNVYNVLEGFEGDLDA 105 (117)
T ss_pred HHHHHHHHCCCCeEEECcCceecCCCC
Confidence 9999999 9999999999999999764
No 25
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.85 E-value=6.5e-21 Score=130.03 Aligned_cols=95 Identities=34% Similarity=0.554 Sum_probs=74.6
Q ss_pred CCCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHH--HhcCCCCCeEEEEcCCchHHHHHHHHHH-cCCC
Q 030104 86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV--STRFRKHDEIIVGCQSGKRSMMAATDLL-NGFA 162 (183)
Q Consensus 86 ~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~--~~~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~ 162 (183)
++++|||+|++.||..+|||||+|+|+..............+... ...++++++|||||.+|.++..+++.|. .||+
T Consensus 3 ~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~ 82 (100)
T smart00450 3 EKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVVYCRSGNRSAKAAWLLRELGFK 82 (100)
T ss_pred CCEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCcCHHHHHHHHHHcCCCCCCeEEEEeCCCcHHHHHHHHHHHcCCC
Confidence 458999999999999999999999998644322111111111222 2235788999999999999999999999 9999
Q ss_pred CeeEccccHHHhhhCCCC
Q 030104 163 GITDIAGGFAAWRQNGLP 180 (183)
Q Consensus 163 ~v~~l~GG~~~W~~~g~p 180 (183)
+|++|+||+.+|.+.+.|
T Consensus 83 ~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 83 NVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred ceEEecCCHHHHHhcCCC
Confidence 999999999999998764
No 26
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.85 E-value=3.5e-21 Score=132.28 Aligned_cols=85 Identities=25% Similarity=0.398 Sum_probs=70.0
Q ss_pred CCCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHH-cCCCCe
Q 030104 86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGI 164 (183)
Q Consensus 86 ~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v 164 (183)
.+.+|||||++.+|..||||||+|+|+..+ ....+.++. +..++++++||+||++|.++..+++.|. .||++|
T Consensus 11 ~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~-----~~~~~~~~~-~~~~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v 84 (96)
T cd01529 11 PGTALLDVRAEDEYAAGHLPGKRSIPGAAL-----VLRSQELQA-LEAPGRATRYVLTCDGSLLARFAAQELLALGGKPV 84 (96)
T ss_pred CCeEEEeCCCHHHHcCCCCCCcEeCCHHHh-----cCCHHHHHH-hhcCCCCCCEEEEeCChHHHHHHHHHHHHcCCCCE
Confidence 458999999999999999999999997422 122233332 3345788999999999999999999999 999999
Q ss_pred eEccccHHHhhh
Q 030104 165 TDIAGGFAAWRQ 176 (183)
Q Consensus 165 ~~l~GG~~~W~~ 176 (183)
++|+||+.+|.+
T Consensus 85 ~~l~GG~~~W~~ 96 (96)
T cd01529 85 ALLDGGTSAWVA 96 (96)
T ss_pred EEeCCCHHHhcC
Confidence 999999999963
No 27
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.85 E-value=6.9e-21 Score=154.74 Aligned_cols=138 Identities=20% Similarity=0.321 Sum_probs=103.0
Q ss_pred eEEccCCccccccccccCCcc---------ccC-CCCcccCHHHHHHHHhC-CCEEEEcCChhhHh-----------ccC
Q 030104 46 IGFISSKILSFCPKASLRGNL---------EAV-GVPTSVPVRVAHELLQA-GHRYLDVRTPEEFS-----------AGH 103 (183)
Q Consensus 46 ~~~l~~~~~~~~~~~~~~~~~---------~~~-~~~~~i~~~~~~~~~~~-~~~lIDvR~~~e~~-----------~gh 103 (183)
+.++++++.+|.......... ... ......+.+++...++. +++|||+|++.||. .||
T Consensus 116 v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~Gh 195 (281)
T PRK11493 116 VSILAGGLAGWQRDDLLLEEGAVELPEGEFNAAFNPEAVVRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGH 195 (281)
T ss_pred EEEcCCCHHHHHHcCCCccCCCCCCCCCcccccCCccceecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCccccc
Confidence 357889999997431110100 000 01123345555555544 48999999999995 699
Q ss_pred CCCceecCcccccCCCCCCCHHHHHHHHhc--CCCCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHHHhhh-CCC
Q 030104 104 ATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQ-NGL 179 (183)
Q Consensus 104 IpgAvnip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~-~g~ 179 (183)
||||+|+|+.++...+.+.+.+.++..+.. ++++++||+||++|.+|..+++.|. +||++|++|+|||.+|.. .++
T Consensus 196 IpgA~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~ 275 (281)
T PRK11493 196 IPGALNVPWTELVREGELKTTDELDAIFFGRGVSFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGARADL 275 (281)
T ss_pred CCCcCCCCHHHhcCCCCcCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccCCCC
Confidence 999999998766655556667777776654 6788999999999999999999999 999999999999999998 689
Q ss_pred CCCC
Q 030104 180 PTEP 183 (183)
Q Consensus 180 pv~~ 183 (183)
|+++
T Consensus 276 P~~~ 279 (281)
T PRK11493 276 PVEP 279 (281)
T ss_pred CcCC
Confidence 9874
No 28
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.85 E-value=9.6e-21 Score=132.62 Aligned_cols=102 Identities=31% Similarity=0.540 Sum_probs=77.7
Q ss_pred CHHHHHHHHh-CCCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHH----HHHHHhcCCCCCeEEEEcCCchHH
Q 030104 76 PVRVAHELLQ-AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKF----VEEVSTRFRKHDEIIVGCQSGKRS 150 (183)
Q Consensus 76 ~~~~~~~~~~-~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~----~~~~~~~l~~~~~ivv~c~~g~~s 150 (183)
|++++++++. ++++|||||++.+|..||||||+|+|+............+. .......++++++||+||.+|.++
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~~~ 80 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGWRS 80 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSCHH
T ss_pred CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeeccccc
Confidence 5788888883 44999999999999999999999999954422222222222 233334467888999999988887
Q ss_pred HHHHHH-----HH-cCCCCeeEccccHHHhhhC
Q 030104 151 MMAATD-----LL-NGFAGITDIAGGFAAWRQN 177 (183)
Q Consensus 151 ~~a~~~-----L~-~G~~~v~~l~GG~~~W~~~ 177 (183)
..++.. |. +||++|++|+||+.+|.++
T Consensus 81 ~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~ 113 (113)
T PF00581_consen 81 GSAAAARVAWILKKLGFKNVYILDGGFEAWKAE 113 (113)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred chhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence 766665 88 9999999999999999863
No 29
>PRK07411 hypothetical protein; Validated
Probab=99.84 E-value=2.8e-20 Score=157.28 Aligned_cols=151 Identities=25% Similarity=0.351 Sum_probs=110.8
Q ss_pred eecCCCCCccceeccccCCCccceeEEccCCccccccccccCCc-cccCCCCcccCHHHHHHHHhCC---CEEEEcCChh
Q 030104 22 VLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGN-LEAVGVPTSVPVRVAHELLQAG---HRYLDVRTPE 97 (183)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~---~~lIDvR~~~ 97 (183)
++|-...+|+ ..++.++|.|+.+..+. .|..+|...+.... .........++++++.++++.+ ++|||||++.
T Consensus 233 ~~d~~~~~~~-~~~~~~~~~c~~i~~~~--~~~~~~G~~~~~~~~~~~~~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~ 309 (390)
T PRK07411 233 LYNALDMKFR-ELKLRPNPERPVIEKLI--DYEQFCGIPQAKAAEAAQKAEIPEMTVTELKALLDSGADDFVLIDVRNPN 309 (390)
T ss_pred EEECCCCcee-EEeccCCCCCCcccccc--chhhhcccccccccccccccccCccCHHHHHHHHhCCCCCeEEEECCCHH
Confidence 3687777777 45566788888766655 66666643221111 1123455789999999988643 6899999999
Q ss_pred hHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHHHhhh
Q 030104 98 EFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQ 176 (183)
Q Consensus 98 e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~ 176 (183)
||..||||||+|+|+.++... ... .....++++++||+||.+|.||..+++.|+ .||++ +.|+||+.+|.+
T Consensus 310 E~~~ghIpGAiniP~~~l~~~------~~~-~~l~~l~~d~~IVvyC~~G~RS~~aa~~L~~~G~~~-~~l~GG~~~W~~ 381 (390)
T PRK07411 310 EYEIARIPGSVLVPLPDIENG------PGV-EKVKELLNGHRLIAHCKMGGRSAKALGILKEAGIEG-TNVKGGITAWSR 381 (390)
T ss_pred HhccCcCCCCEEccHHHhhcc------cch-HHHhhcCCCCeEEEECCCCHHHHHHHHHHHHcCCCe-EEecchHHHHHH
Confidence 999999999999998532111 001 123345678999999999999999999999 99975 579999999999
Q ss_pred CCCCCCC
Q 030104 177 NGLPTEP 183 (183)
Q Consensus 177 ~g~pv~~ 183 (183)
+..|..|
T Consensus 382 ~~~p~~p 388 (390)
T PRK07411 382 EVDPSVP 388 (390)
T ss_pred hcCCCCC
Confidence 8877654
No 30
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.84 E-value=2.4e-20 Score=154.09 Aligned_cols=109 Identities=17% Similarity=0.295 Sum_probs=91.6
Q ss_pred cCHHHHHHHHhC-CCEEEEcCChhhH-----------hccCCCCceecCcccccC-CCCCCCHHHHHHHHhc--CCCCCe
Q 030104 75 VPVRVAHELLQA-GHRYLDVRTPEEF-----------SAGHATGAINVPYMYRVG-SGMTKNLKFVEEVSTR--FRKHDE 139 (183)
Q Consensus 75 i~~~~~~~~~~~-~~~lIDvR~~~e~-----------~~ghIpgAvnip~~~~~~-~~~~~~~~~~~~~~~~--l~~~~~ 139 (183)
++.+++.+.++. +.+|||+|++.+| ..||||||+|+|+..++. .+.+.+.+.++..+.. ++++++
T Consensus 192 ~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~~~~~~~~el~~~~~~~gi~~~~~ 271 (320)
T PLN02723 192 WTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSSQTLLPAEELKKRFEQEGISLDSP 271 (320)
T ss_pred ecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCCCCCCCHHHHHHHHHhcCCCCCCC
Confidence 577888877755 4889999999988 469999999999975543 3456777888887764 688899
Q ss_pred EEEEcCCchHHHHHHHHHH-cCCCCeeEccccHHHhhhC-CCCCCC
Q 030104 140 IIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQN-GLPTEP 183 (183)
Q Consensus 140 ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~-g~pv~~ 183 (183)
||+||++|.+|..+++.|+ +||++|++|+|||.+|... ..|+++
T Consensus 272 iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~~ 317 (320)
T PLN02723 272 IVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALPDTPVAT 317 (320)
T ss_pred EEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCccC
Confidence 9999999999999999999 9999999999999999876 677753
No 31
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.84 E-value=2.5e-20 Score=157.09 Aligned_cols=98 Identities=35% Similarity=0.596 Sum_probs=87.0
Q ss_pred cccCHHHHHHHHhCCCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhc--CCCCCeEEEEcCCchHH
Q 030104 73 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRS 150 (183)
Q Consensus 73 ~~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~~s 150 (183)
..++++++.++++++.+|||||++.||..||||||+|+|+ ..+...... .+++++||+||++|.+|
T Consensus 3 ~~is~~el~~~l~~~~~ivDvR~~~e~~~ghIpgAi~ip~------------~~l~~~~~~~~~~~~~~IvvyC~~G~rs 70 (376)
T PRK08762 3 REISPAEARARAAQGAVLIDVREAHERASGQAEGALRIPR------------GFLELRIETHLPDRDREIVLICASGTRS 70 (376)
T ss_pred ceeCHHHHHHHHhCCCEEEECCCHHHHhCCcCCCCEECCH------------HHHHHHHhhhcCCCCCeEEEEcCCCcHH
Confidence 5688999999988889999999999999999999999998 344443333 26789999999999999
Q ss_pred HHHHHHHH-cCCCCeeEccccHHHhhhCCCCCC
Q 030104 151 MMAATDLL-NGFAGITDIAGGFAAWRQNGLPTE 182 (183)
Q Consensus 151 ~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~ 182 (183)
..+++.|+ .||++|++|+||+.+|.+.|+|++
T Consensus 71 ~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~ 103 (376)
T PRK08762 71 AHAAATLRELGYTRVASVAGGFSAWKDAGLPLE 103 (376)
T ss_pred HHHHHHHHHcCCCceEeecCcHHHHHhcCCccc
Confidence 99999999 999999999999999999999986
No 32
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.83 E-value=3.4e-20 Score=135.78 Aligned_cols=101 Identities=20% Similarity=0.259 Sum_probs=82.2
Q ss_pred cCHHHHHHHHh-----CCCEEEEcCCh--------hhHhc------------cCCCCceecCcccccCC-----CCCCCH
Q 030104 75 VPVRVAHELLQ-----AGHRYLDVRTP--------EEFSA------------GHATGAINVPYMYRVGS-----GMTKNL 124 (183)
Q Consensus 75 i~~~~~~~~~~-----~~~~lIDvR~~--------~e~~~------------ghIpgAvnip~~~~~~~-----~~~~~~ 124 (183)
++++++.+.++ .+++|||+|.. .+|.. ||||||+|+|+..+... ....+.
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~~ 80 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPSE 80 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCCH
Confidence 46788888876 34899999987 88987 99999999998644321 234445
Q ss_pred HHHHHHHhc--CCCCCeEEEEcCC---chHHHHHHHHHH-cCCCCeeEccccHHHhh
Q 030104 125 KFVEEVSTR--FRKHDEIIVGCQS---GKRSMMAATDLL-NGFAGITDIAGGFAAWR 175 (183)
Q Consensus 125 ~~~~~~~~~--l~~~~~ivv~c~~---g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~ 175 (183)
+.++..+.. ++++++||+||++ |..+.++++.|+ +|+++|++|+||+.+|.
T Consensus 81 ~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 81 AEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 567776665 6788999999986 778999999999 99999999999999996
No 33
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.83 E-value=2.9e-20 Score=126.93 Aligned_cols=79 Identities=27% Similarity=0.453 Sum_probs=65.9
Q ss_pred CCCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHH-HHHhcCC-CCCeEEEEcCCchH--HHHHHHHHH-cC
Q 030104 86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVE-EVSTRFR-KHDEIIVGCQSGKR--SMMAATDLL-NG 160 (183)
Q Consensus 86 ~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~-~~~~~l~-~~~~ivv~c~~g~~--s~~a~~~L~-~G 160 (183)
++++|||+|++.||..+|||||+|+|.. .+. .....++ ++++|||||.+|.+ |..+++.|. .|
T Consensus 9 ~~~~liDvR~~~e~~~~hi~ga~~ip~~------------~~~~~~~~~~~~~~~~ivl~c~~G~~~~s~~aa~~L~~~G 76 (92)
T cd01532 9 EEIALIDVREEDPFAQSHPLWAANLPLS------------RLELDAWVRIPRRDTPIVVYGEGGGEDLAPRAARRLSELG 76 (92)
T ss_pred CCeEEEECCCHHHHhhCCcccCeeCCHH------------HHHhhhHhhCCCCCCeEEEEeCCCCchHHHHHHHHHHHcC
Confidence 4489999999999999999999999983 222 1222233 48899999999986 679999999 99
Q ss_pred CCCeeEccccHHHhhh
Q 030104 161 FAGITDIAGGFAAWRQ 176 (183)
Q Consensus 161 ~~~v~~l~GG~~~W~~ 176 (183)
|++|++|+||+.+|.+
T Consensus 77 ~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 77 YTDVALLEGGLQGWRA 92 (92)
T ss_pred ccCEEEccCCHHHHcC
Confidence 9999999999999974
No 34
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.83 E-value=7.8e-20 Score=148.55 Aligned_cols=110 Identities=20% Similarity=0.221 Sum_probs=90.8
Q ss_pred cccCHHHHHHHHhCC-CEEEEcCC----------hhhHhccCCCCceecCcccccCC-----CCCCCHHHHHHHHhc--C
Q 030104 73 TSVPVRVAHELLQAG-HRYLDVRT----------PEEFSAGHATGAINVPYMYRVGS-----GMTKNLKFVEEVSTR--F 134 (183)
Q Consensus 73 ~~i~~~~~~~~~~~~-~~lIDvR~----------~~e~~~ghIpgAvnip~~~~~~~-----~~~~~~~~~~~~~~~--l 134 (183)
..++++++.+.++++ ++|||+|+ +.+|..||||||+|+|+...... .+....+.++..+.. +
T Consensus 5 ~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 84 (281)
T PRK11493 5 WFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMRELGV 84 (281)
T ss_pred cccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHcCC
Confidence 468899999888764 89999996 68899999999999998643321 234456677777766 5
Q ss_pred CCCCeEEEEcCCch-HHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCC
Q 030104 135 RKHDEIIVGCQSGK-RSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTE 182 (183)
Q Consensus 135 ~~~~~ivv~c~~g~-~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~ 182 (183)
+++++|||||.++. .+.++++.|. .||++|++|+||+.+|.++|+|++
T Consensus 85 ~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~ 134 (281)
T PRK11493 85 NQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLE 134 (281)
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCcc
Confidence 78999999999876 4668889999 999999999999999999999876
No 35
>PRK01415 hypothetical protein; Validated
Probab=99.82 E-value=7.2e-20 Score=145.19 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=83.7
Q ss_pred CCCcccCHHHHHHHHhCC-CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCch
Q 030104 70 GVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK 148 (183)
Q Consensus 70 ~~~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~ 148 (183)
.....|+++++.++++++ ++|||||++.||..||||||+|+|...+. +.+..+. ....++++++|++||.+|.
T Consensus 109 ~~g~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~gAinip~~~f~-----e~~~~~~-~~~~~~k~k~Iv~yCtgGi 182 (247)
T PRK01415 109 FKGEYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFKSAINPNTKTFK-----QFPAWVQ-QNQELLKGKKIAMVCTGGI 182 (247)
T ss_pred cCccccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcCCCCCCChHHHh-----hhHHHHh-hhhhhcCCCeEEEECCCCh
Confidence 356789999999988754 89999999999999999999999984110 0011111 1234578899999999999
Q ss_pred HHHHHHHHHH-cCCCCeeEccccHHHhhhCC
Q 030104 149 RSMMAATDLL-NGFAGITDIAGGFAAWRQNG 178 (183)
Q Consensus 149 ~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g 178 (183)
||..++..|+ .||++|+.|.||+.+|.++.
T Consensus 183 Rs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~ 213 (247)
T PRK01415 183 RCEKSTSLLKSIGYDEVYHLKGGILQYLEDT 213 (247)
T ss_pred HHHHHHHHHHHcCCCcEEEechHHHHHHHhc
Confidence 9999999999 99999999999999998753
No 36
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.82 E-value=1.1e-19 Score=146.68 Aligned_cols=140 Identities=23% Similarity=0.375 Sum_probs=109.0
Q ss_pred ceeEEccCCccccccccccCCccc----c------CCCCcccCHHHHHHHHhCC-CEEEEcCChhhHhc----------c
Q 030104 44 DNIGFISSKILSFCPKASLRGNLE----A------VGVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSA----------G 102 (183)
Q Consensus 44 ~~~~~l~~~~~~~~~~~~~~~~~~----~------~~~~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~----------g 102 (183)
.-+.+|++++.+|........... . -.....++..+++...+.. .+|||+|++.+|.. |
T Consensus 117 ~~V~iLdGG~~~W~~~g~p~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~G 196 (285)
T COG2897 117 ENVRILDGGLPAWKAAGLPLETEPPEPPPTTFSAKYNVKAVVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAG 196 (285)
T ss_pred CceEEecCCHHHHHHcCCCccCCCCCCCCccccccCCccccCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCC
Confidence 446789999999986543333110 0 1122345566677766655 77899999999998 9
Q ss_pred CCCCceecCcccccC-CCCCCCHHHHHHHHhc--CCCCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHHHhhhC-
Q 030104 103 HATGAINVPYMYRVG-SGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQN- 177 (183)
Q Consensus 103 hIpgAvnip~~~~~~-~~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~- 177 (183)
|||||+|+|+...+. ..+.+..+.++.+.+. ++.+++||+||.+|.+|+..+..|+ +|+.++++|+|+|.+|.+.
T Consensus 197 HIPGAiNipw~~~~~~~~~~~~~~~~~~l~~~~gi~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~ 276 (285)
T COG2897 197 HIPGAINIPWTDLVDDGGLFKSPEEIARLYADAGIDPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDP 276 (285)
T ss_pred CCCCCcCcCHHHHhcCCCccCcHHHHHHHHHhcCCCCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCC
Confidence 999999999987775 4566777788877744 8999999999999999999999999 8888889999999999886
Q ss_pred CCCCCC
Q 030104 178 GLPTEP 183 (183)
Q Consensus 178 g~pv~~ 183 (183)
+.||++
T Consensus 277 ~~PV~~ 282 (285)
T COG2897 277 DRPVET 282 (285)
T ss_pred CCcccc
Confidence 557763
No 37
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.82 E-value=1.2e-19 Score=160.78 Aligned_cols=110 Identities=21% Similarity=0.216 Sum_probs=93.0
Q ss_pred cccCHHHHHHHHhCC-CEEEEcCChhhHhccCCCCceecCccccc-----CCCCCCCHHHHHHHHhc--CCCCCeEEEEc
Q 030104 73 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRV-----GSGMTKNLKFVEEVSTR--FRKHDEIIVGC 144 (183)
Q Consensus 73 ~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpgAvnip~~~~~-----~~~~~~~~~~~~~~~~~--l~~~~~ivv~c 144 (183)
..|++++++++++++ ++|||+|++.+|..||||||+|++++... ..+.+.+.+.++..+.. ++++++|||||
T Consensus 9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~~d~~VVvYd 88 (610)
T PRK09629 9 LVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHNPDAVYVVYD 88 (610)
T ss_pred ceecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEEC
Confidence 569999999998765 89999999999999999999999975322 12345556667777666 57889999999
Q ss_pred CCc-hHHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCC
Q 030104 145 QSG-KRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTE 182 (183)
Q Consensus 145 ~~g-~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~ 182 (183)
++| .++.+++|.|+ +|+++|++|+||+.+|..+|+|++
T Consensus 89 ~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~ 128 (610)
T PRK09629 89 DEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLS 128 (610)
T ss_pred CCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccc
Confidence 977 47889999999 999999999999999999999875
No 38
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.81 E-value=9.6e-20 Score=145.99 Aligned_cols=102 Identities=19% Similarity=0.245 Sum_probs=81.9
Q ss_pred CCCcccCHHHHHHHHhC-------CCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEE
Q 030104 70 GVPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIV 142 (183)
Q Consensus 70 ~~~~~i~~~~~~~~~~~-------~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv 142 (183)
.....++++++.+++++ +.+|||||++.||+.||||||+|+|+..+. .....+......+ ++++||+
T Consensus 107 ~~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~-----~~~~~l~~~~~~~-kdk~Ivv 180 (257)
T PRK05320 107 GRAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFT-----EFPEALAAHRADL-AGKTVVS 180 (257)
T ss_pred CcCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhh-----hhHHHHHhhhhhc-CCCeEEE
Confidence 45568999999888765 278999999999999999999999984211 1111222222233 7889999
Q ss_pred EcCCchHHHHHHHHHH-cCCCCeeEccccHHHhhhC
Q 030104 143 GCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQN 177 (183)
Q Consensus 143 ~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~ 177 (183)
||++|.||..++..|+ .||++|++|.||+.+|.++
T Consensus 181 yC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~ 216 (257)
T PRK05320 181 FCTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFEE 216 (257)
T ss_pred ECCCCHHHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence 9999999999999999 9999999999999999875
No 39
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.81 E-value=2.3e-19 Score=148.23 Aligned_cols=112 Identities=19% Similarity=0.222 Sum_probs=90.5
Q ss_pred CcccCHHHHHHHHhCC-CEEEEcC--------C-hhhHhccCCCCceecCcccccCC-----CCCCCHHHHHHHHhc--C
Q 030104 72 PTSVPVRVAHELLQAG-HRYLDVR--------T-PEEFSAGHATGAINVPYMYRVGS-----GMTKNLKFVEEVSTR--F 134 (183)
Q Consensus 72 ~~~i~~~~~~~~~~~~-~~lIDvR--------~-~~e~~~ghIpgAvnip~~~~~~~-----~~~~~~~~~~~~~~~--l 134 (183)
...|++++++++++++ ++|||+| + ..+|..||||||+|+++..+... .+..+.+.+...+.. +
T Consensus 21 ~~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~~~~~lp~~~~~~~~l~~~Gi 100 (320)
T PLN02723 21 EPVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTDLPHMLPSEEAFAAAVSALGI 100 (320)
T ss_pred CceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCCcCCCCCCHHHHHHHHHHcCC
Confidence 3579999999988654 8899996 3 37899999999999997643321 334455667777766 5
Q ss_pred CCCCeEEEEcCCch-HHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCCC
Q 030104 135 RKHDEIIVGCQSGK-RSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTEP 183 (183)
Q Consensus 135 ~~~~~ivv~c~~g~-~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~~ 183 (183)
.++++|||||++|. .+.++++.|+ +||++|++|+||+.+|.++|+|+++
T Consensus 101 ~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~ 151 (320)
T PLN02723 101 ENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVES 151 (320)
T ss_pred CCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCccc
Confidence 68899999999886 4568889999 9999999999999999999999863
No 40
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.81 E-value=1.1e-19 Score=121.92 Aligned_cols=80 Identities=40% Similarity=0.673 Sum_probs=68.8
Q ss_pred hCCCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHH-HHhcCCCCCeEEEEcCCchHHHHHHHHHH-cCCC
Q 030104 85 QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE-VSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFA 162 (183)
Q Consensus 85 ~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~-~~~~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~ 162 (183)
+.+.+|||+|++.+|..+|||||+|+|+. ..... ....++++++|||||.+|.++..+++.|+ .||+
T Consensus 8 ~~~~~iiD~R~~~~~~~~~i~ga~~~~~~-----------~~~~~~~~~~~~~~~~vv~~c~~~~~a~~~~~~l~~~G~~ 76 (89)
T cd00158 8 DEDAVLLDVREPEEYAAGHIPGAINIPLS-----------ELEERAALLELDKDKPIVVYCRSGNRSARAAKLLRKAGGT 76 (89)
T ss_pred CCCeEEEECCCHHHHhccccCCCEecchH-----------HHhhHHHhhccCCCCeEEEEeCCCchHHHHHHHHHHhCcc
Confidence 34589999999999999999999999984 11111 24456788999999999999999999999 9999
Q ss_pred CeeEccccHHHhh
Q 030104 163 GITDIAGGFAAWR 175 (183)
Q Consensus 163 ~v~~l~GG~~~W~ 175 (183)
++++|+||+.+|.
T Consensus 77 ~v~~l~gG~~~w~ 89 (89)
T cd00158 77 NVYNLEGGMLAWK 89 (89)
T ss_pred cEEEecCChhhcC
Confidence 9999999999994
No 41
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.81 E-value=1.6e-19 Score=126.29 Aligned_cols=86 Identities=40% Similarity=0.699 Sum_probs=74.7
Q ss_pred CCCEEEEcCChhhHhccCCCC-ceecCcccccCCCCCCCHHHHHHHHhc--CCCCCeEEEEcCCchHHHHHHHHHH-cCC
Q 030104 86 AGHRYLDVRTPEEFSAGHATG-AINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLL-NGF 161 (183)
Q Consensus 86 ~~~~lIDvR~~~e~~~ghIpg-Avnip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~~s~~a~~~L~-~G~ 161 (183)
.+.++||||++.||..+|||| ++|+|..+ +...... ++++++|||||.+|.||..++..|+ .||
T Consensus 19 ~~~~liDvR~~~e~~~~~i~~~~~~ip~~~------------~~~~~~~~~~~~~~~ivv~C~~G~rS~~aa~~L~~~G~ 86 (110)
T COG0607 19 EDAVLLDVREPEEYERGHIPGAAINIPLSE------------LKAAENLLELPDDDPIVVYCASGVRSAAAAAALKLAGF 86 (110)
T ss_pred CCCEEEeccChhHhhhcCCCcceeeeeccc------------chhhhcccccCCCCeEEEEeCCCCChHHHHHHHHHcCC
Confidence 359999999999999999999 99999952 2222222 4789999999999999999999999 999
Q ss_pred CCeeEccccHHHhhhCCCCCCC
Q 030104 162 AGITDIAGGFAAWRQNGLPTEP 183 (183)
Q Consensus 162 ~~v~~l~GG~~~W~~~g~pv~~ 183 (183)
+++++++||+.+|..+++|+++
T Consensus 87 ~~~~~l~gG~~~w~~~~~~~~~ 108 (110)
T COG0607 87 TNVYNLDGGIDAWKGAGLPLVR 108 (110)
T ss_pred ccccccCCcHHHHHhcCCCccc
Confidence 9888999999999999998763
No 42
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.81 E-value=3e-19 Score=158.13 Aligned_cols=138 Identities=20% Similarity=0.331 Sum_probs=105.7
Q ss_pred eeEEccCCccccccccccCC-ccc---------cCCCCcccCHHHHHHHHhC-CCEEEEcCChhhHh--------ccCCC
Q 030104 45 NIGFISSKILSFCPKASLRG-NLE---------AVGVPTSVPVRVAHELLQA-GHRYLDVRTPEEFS--------AGHAT 105 (183)
Q Consensus 45 ~~~~l~~~~~~~~~~~~~~~-~~~---------~~~~~~~i~~~~~~~~~~~-~~~lIDvR~~~e~~--------~ghIp 105 (183)
-+.++++++.+|........ ... .......++.+++++.+++ +++|||+|++.||. .||||
T Consensus 109 ~V~iLdGG~~aW~~ag~p~~~~~~~~~~~~~~~~~~~~~~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIP 188 (610)
T PRK09629 109 GYHYLDGGVLAWEAQALPLSTDVPPVAGGPVTLTLHDEPTATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIP 188 (610)
T ss_pred CEEEcCCCHHHHHHcCCccccCCCCCCCcceeeccCCcccccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCC
Confidence 45679999999975432111 000 0111225678888887765 47899999999995 69999
Q ss_pred CceecCccccc-CCCCCCCHHHHHHHHhc--CCCCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHHHhhhC-CCC
Q 030104 106 GAINVPYMYRV-GSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQN-GLP 180 (183)
Q Consensus 106 gAvnip~~~~~-~~~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~-g~p 180 (183)
||+|+|+...+ ..+...+.+.+++++.. ++++++||+||++|.+|..+++.|+ +||++|++|+|||.+|... +.|
T Consensus 189 GAvnip~~~~~~~~~~lk~~~el~~~~~~~Gi~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lP 268 (610)
T PRK09629 189 GAVNFEWTAGMDKARNLRIRQDMPEILRDLGITPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTP 268 (610)
T ss_pred CCeecCHHHhcCCCCCCCCHHHHHHHHHHcCCCCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCc
Confidence 99999986544 23445667778877765 6788999999999999999999999 9999999999999999875 678
Q ss_pred CC
Q 030104 181 TE 182 (183)
Q Consensus 181 v~ 182 (183)
++
T Consensus 269 v~ 270 (610)
T PRK09629 269 VE 270 (610)
T ss_pred cc
Confidence 76
No 43
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.79 E-value=2.7e-19 Score=126.49 Aligned_cols=96 Identities=22% Similarity=0.382 Sum_probs=73.6
Q ss_pred cccCHHHHHHHHhCC---CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhc--CCCCCeEEEEcC-C
Q 030104 73 TSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQ-S 146 (183)
Q Consensus 73 ~~i~~~~~~~~~~~~---~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~ivv~c~-~ 146 (183)
..|+++++.+++..+ .+|||||++ ||..||||||+|+|+..+. ..+.+.... ++++++|||||. +
T Consensus 2 ~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~--------~~~~~~~~~~~~~~~~~iv~yC~~~ 72 (113)
T cd01531 2 SYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFK--------AQLNQLVQLLSGSKKDTVVFHCALS 72 (113)
T ss_pred CcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHh--------hCHHHHHHHHhcCCCCeEEEEeecC
Confidence 467889999988653 689999999 9999999999999985211 112222222 256789999998 6
Q ss_pred chHHHHHHHHHH-c--------CCCCeeEccccHHHhhhC
Q 030104 147 GKRSMMAATDLL-N--------GFAGITDIAGGFAAWRQN 177 (183)
Q Consensus 147 g~~s~~a~~~L~-~--------G~~~v~~l~GG~~~W~~~ 177 (183)
|.|+..++..|. . |+.+|++|+||+.+|.+.
T Consensus 73 ~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 73 QVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred CcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 678887777664 1 999999999999999864
No 44
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.79 E-value=6e-19 Score=122.49 Aligned_cols=78 Identities=32% Similarity=0.549 Sum_probs=66.3
Q ss_pred CCCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhc--CCCCCeEEEEcCCchHHHHHHHHHH-cCCC
Q 030104 86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLL-NGFA 162 (183)
Q Consensus 86 ~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~ 162 (183)
....+||+|++.||..||||||+|+|+. .+...... .+++++|||||++|.+|..++..|. .||+
T Consensus 17 ~~~~lIDvR~~~ef~~ghIpgAinip~~------------~l~~~l~~~~~~~~~~vvlyC~~G~rS~~aa~~L~~~G~~ 84 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQEHIQGAINIPLK------------EIKEHIATAVPDKNDTVKLYCNAGRQSGMAKDILLDMGYT 84 (101)
T ss_pred cCCEEEECCCHHHHhcCCCCCCEECCHH------------HHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHcCCC
Confidence 3478999999999999999999999983 34433433 2467799999999999999999999 9999
Q ss_pred CeeEccccHHHhhh
Q 030104 163 GITDIAGGFAAWRQ 176 (183)
Q Consensus 163 ~v~~l~GG~~~W~~ 176 (183)
+++++ ||+.+|..
T Consensus 85 ~v~~~-GG~~~~~~ 97 (101)
T TIGR02981 85 HAENA-GGIKDIAM 97 (101)
T ss_pred eEEec-CCHHHhhh
Confidence 99985 99999975
No 45
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.79 E-value=5.2e-19 Score=123.37 Aligned_cols=77 Identities=31% Similarity=0.529 Sum_probs=65.8
Q ss_pred CCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcC--CCCCeEEEEcCCchHHHHHHHHHH-cCCCC
Q 030104 87 GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQSGKRSMMAATDLL-NGFAG 163 (183)
Q Consensus 87 ~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l--~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~ 163 (183)
+-++||+|++.||..||||||+|+|+. .+......+ +++++||+||++|.+|..++..|. .||++
T Consensus 20 ~~~lIDvR~~~ef~~ghIpGAiniP~~------------~l~~~l~~l~~~~~~~IVlyC~~G~rS~~aa~~L~~~G~~~ 87 (104)
T PRK10287 20 AEHWIDVRVPEQYQQEHVQGAINIPLK------------EVKERIATAVPDKNDTVKLYCNAGRQSGQAKEILSEMGYTH 87 (104)
T ss_pred CCEEEECCCHHHHhcCCCCccEECCHH------------HHHHHHHhcCCCCCCeEEEEeCCChHHHHHHHHHHHcCCCe
Confidence 357999999999999999999999983 344444443 456789999999999999999999 99999
Q ss_pred eeEccccHHHhhh
Q 030104 164 ITDIAGGFAAWRQ 176 (183)
Q Consensus 164 v~~l~GG~~~W~~ 176 (183)
|++ .||+.+|..
T Consensus 88 v~~-~GG~~~~~~ 99 (104)
T PRK10287 88 AEN-AGGLKDIAM 99 (104)
T ss_pred EEe-cCCHHHHhh
Confidence 987 699999975
No 46
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.79 E-value=5.7e-19 Score=145.26 Aligned_cols=102 Identities=24% Similarity=0.345 Sum_probs=82.1
Q ss_pred CCCcccCHHHHHHHHhCC-CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCch
Q 030104 70 GVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK 148 (183)
Q Consensus 70 ~~~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~ 148 (183)
.....++++++.++++++ ++|||||++.||..||||||+|+|+..+. .....+.... .+.++++||+||.+|.
T Consensus 109 ~~~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~-----~~~~~l~~~~-~~~kdk~IvvyC~~G~ 182 (314)
T PRK00142 109 NVGTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENAIEPDIETFR-----EFPPWVEENL-DPLKDKKVVMYCTGGI 182 (314)
T ss_pred cCCcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCCEeCCHHHhh-----hhHHHHHHhc-CCCCcCeEEEECCCCc
Confidence 345678999998888665 89999999999999999999999985211 1111121211 2357899999999999
Q ss_pred HHHHHHHHHH-cCCCCeeEccccHHHhhhC
Q 030104 149 RSMMAATDLL-NGFAGITDIAGGFAAWRQN 177 (183)
Q Consensus 149 ~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~ 177 (183)
|+..++..|. .||++|++|+||+.+|.+.
T Consensus 183 Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~~ 212 (314)
T PRK00142 183 RCEKASAWMKHEGFKEVYQLEGGIITYGED 212 (314)
T ss_pred HHHHHHHHHHHcCCCcEEEecchHHHHHHh
Confidence 9999999999 9999999999999999874
No 47
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.78 E-value=3.2e-19 Score=144.74 Aligned_cols=173 Identities=21% Similarity=0.254 Sum_probs=129.9
Q ss_pred CCccccchhhhccc--CCCCCCceecCCCCCccceeccccCCCcc------ceeEEccCCccccccccccCC-ccccCCC
Q 030104 1 MEATSLISLSSFAA--GASSLPPVLCPHGNNRRGLLSLTVDQQRC------DNIGFISSKILSFCPKASLRG-NLEAVGV 71 (183)
Q Consensus 1 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~-~~~~~~~ 71 (183)
|.|++.+++.+.-. +++ -.-+||+.++.||.++.+.|.+.|. .++..+ +|..||....... .+...+.
T Consensus 239 mQALE~iKli~~~~~~~s~-~lllfdg~~~~~r~irlR~r~~~C~~Cg~n~tit~~~--dYe~fCg~~~~~~~~l~lL~~ 315 (427)
T KOG2017|consen 239 MQALETIKLIAGIGESLSG-RLLLFDGLSGHFRTIRLRSRRPKCAVCGKNPTITSLI--DYELFCGSSATDKCPLKLLEP 315 (427)
T ss_pred HHHHHHHHHHHccCccCCc-ceEEEecccceeEEEEeccCCCCCcccCCCCccCccc--chhcccCCccccccchhcCCh
Confidence 34556666665533 222 2347999999999999999999985 555544 8999996444333 4456677
Q ss_pred CcccCHHHHHHHHhCC--CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcC-CCCCeEEEEcCCch
Q 030104 72 PTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-RKHDEIIVGCQSGK 148 (183)
Q Consensus 72 ~~~i~~~~~~~~~~~~--~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l-~~~~~ivv~c~~g~ 148 (183)
...|+..+++++++++ +++||||++.||+..|+|+|+|||+.+..... - ++....+ ...++|+|+|+.|+
T Consensus 316 ~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~~------~-~~~~~~~~~~~~~I~ViCrrGN 388 (427)
T KOG2017|consen 316 DERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEAVNIPLKELRSRS------G-KKLQGDLNTESKDIFVICRRGN 388 (427)
T ss_pred hhcccHHHHHHHHhcCCCeEEEeccCcceEEEEecccccccchhhhhhhh------h-hhhcccccccCCCEEEEeCCCC
Confidence 8899999999999875 99999999999999999999999994221110 0 2222223 24578999999999
Q ss_pred HHHHHHHHHH--cCCCCeeEccccHHHhhhCCCCCCC
Q 030104 149 RSMMAATDLL--NGFAGITDIAGGFAAWRQNGLPTEP 183 (183)
Q Consensus 149 ~s~~a~~~L~--~G~~~v~~l~GG~~~W~~~g~pv~~ 183 (183)
.|+++++.|+ ...-.|+.+.||+.+|..+-.|.+|
T Consensus 389 dSQ~Av~~Lre~~~~~~vrDvigGl~~w~~~vd~~fP 425 (427)
T KOG2017|consen 389 DSQRAVRILREKFPDSSVRDVIGGLKAWAAKVDPNFP 425 (427)
T ss_pred chHHHHHHHHhhCCchhhhhhhhHHHHHHHhcCcCCC
Confidence 9999999999 4555788999999999998777654
No 48
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.78 E-value=2.2e-18 Score=144.17 Aligned_cols=129 Identities=25% Similarity=0.394 Sum_probs=94.8
Q ss_pred ecCCCCCccceeccccCCCccceeEEccCCccccccccccCCccccCCCCcccCHHHHHHHHhCCCEEEEcCChhhHhcc
Q 030104 23 LCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAG 102 (183)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lIDvR~~~e~~~g 102 (183)
+|-...+|+ ..++.++|.|........| .+ + . ..+....++.+++.++ .++.+|||||++.||..+
T Consensus 224 ~d~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~------~-~-~~~~~~~i~~~~~~~~-~~~~~IIDVR~~~ef~~g 289 (355)
T PRK05597 224 YDSLDGTWE-YIPVVGNPAVLERVRGSTP----VH------G-I-SGGFGEVLDVPRVSAL-PDGVTLIDVREPSEFAAY 289 (355)
T ss_pred EECCCCeEE-EEeccCCCCCccccccccc----cc------c-c-cCCcccccCHHHHHhc-cCCCEEEECCCHHHHccC
Confidence 677777777 4466677877432211111 11 0 0 1244567888888854 456899999999999999
Q ss_pred CCCCceecCcccccCCCCCCCHHHHHHH-HhcCCCCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHHHhhh
Q 030104 103 HATGAINVPYMYRVGSGMTKNLKFVEEV-STRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQ 176 (183)
Q Consensus 103 hIpgAvnip~~~~~~~~~~~~~~~~~~~-~~~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~ 176 (183)
|||||+|+|+.+. .... ...++++++||+||++|.+|..+++.|+ .||++|++|+||+.+|.+
T Consensus 290 hIpgAinip~~~l-----------~~~~~~~~~~~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~ 354 (355)
T PRK05597 290 SIPGAHNVPLSAI-----------REGANPPSVSAGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIEGWLD 354 (355)
T ss_pred cCCCCEEeCHHHh-----------hhccccccCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHHHHhh
Confidence 9999999998421 1111 1235678899999999999999999999 999999999999999975
No 49
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.77 E-value=8.9e-19 Score=123.88 Aligned_cols=94 Identities=24% Similarity=0.318 Sum_probs=70.0
Q ss_pred cccCHHHHHHHHhCC-------CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcC--CCCCeEEEE
Q 030104 73 TSVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVG 143 (183)
Q Consensus 73 ~~i~~~~~~~~~~~~-------~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l--~~~~~ivv~ 143 (183)
..+++++++++++++ .+|||||++ ||..||||||+|+|+..+. +.+.+....+ .+.++||+|
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~~--------~~~~~~~~~~~~~~~~~iv~~ 72 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSCY--------QTLPQVYALFSLAGVKLAIFY 72 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHHH--------HHHHHHHHHhhhcCCCEEEEE
Confidence 357889999988764 789999999 9999999999999984211 1122222222 345789999
Q ss_pred cCC-chHHHHHHHHHH-----cCC--CCeeEccccHHHhh
Q 030104 144 CQS-GKRSMMAATDLL-----NGF--AGITDIAGGFAAWR 175 (183)
Q Consensus 144 c~~-g~~s~~a~~~L~-----~G~--~~v~~l~GG~~~W~ 175 (183)
|.+ |.||..++..+. .|| .++++|+||+.+|.
T Consensus 73 C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 73 CGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred CCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 996 578777665543 465 68999999999996
No 50
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.74 E-value=1.7e-17 Score=134.01 Aligned_cols=114 Identities=23% Similarity=0.286 Sum_probs=94.8
Q ss_pred CCCcccCHHHHHHHHhC------CCEEEEcCCh--hhHhccCCCCceecCcccccC-----CCCCCCHHHHHHHHhc--C
Q 030104 70 GVPTSVPVRVAHELLQA------GHRYLDVRTP--EEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--F 134 (183)
Q Consensus 70 ~~~~~i~~~~~~~~~~~------~~~lIDvR~~--~e~~~ghIpgAvnip~~~~~~-----~~~~~~~~~~~~~~~~--l 134 (183)
.....|+++.+.+.+++ +..+++++.. .+|..+|||||+++++..... .+++.+++.++.++.. |
T Consensus 8 ~~~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~GI 87 (285)
T COG2897 8 SSEFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGELGI 87 (285)
T ss_pred CcceEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHHcCC
Confidence 34567899999888764 3566666665 899999999999999976552 4677788888888776 7
Q ss_pred CCCCeEEEEcCCch-HHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCCC
Q 030104 135 RKHDEIIVGCQSGK-RSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTEP 183 (183)
Q Consensus 135 ~~~~~ivv~c~~g~-~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~~ 183 (183)
..+++||+|.+.+. .+.+++|.|+ +|+++|++|+||+.+|.++|+|++.
T Consensus 88 ~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~ 138 (285)
T COG2897 88 RNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLET 138 (285)
T ss_pred CCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccC
Confidence 88999999998665 6789999999 9999999999999999999999873
No 51
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.73 E-value=1.2e-17 Score=138.91 Aligned_cols=102 Identities=27% Similarity=0.420 Sum_probs=76.4
Q ss_pred HHHHHHHHhCCCEEEEcCChhhHhccCCCCceecCcccccCC----------C---------CCCC---HHHHHHHHhcC
Q 030104 77 VRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGS----------G---------MTKN---LKFVEEVSTRF 134 (183)
Q Consensus 77 ~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~----------~---------~~~~---~~~~~~~~~~l 134 (183)
..++.+++.++.+|||||++.||..||||||+|+|+...... + .... .+.+.+.+..+
T Consensus 5 ~~~~~~~~~~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~~~~~~~~~~~ 84 (345)
T PRK11784 5 AQDFRALFLNDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIAAHREEAWADF 84 (345)
T ss_pred HHHHHHHHhCCCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHHHHHHHHHHhc
Confidence 456777777789999999999999999999999999532110 0 0001 11122222233
Q ss_pred C-CCCeEEEEcC-CchHHHHHHHHHH-cCCCCeeEccccHHHhhhCCC
Q 030104 135 R-KHDEIIVGCQ-SGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGL 179 (183)
Q Consensus 135 ~-~~~~ivv~c~-~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~ 179 (183)
+ ++++|||||. +|.||..+++.|. .|| ++++|+||+.+|...+.
T Consensus 85 ~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~ 131 (345)
T PRK11784 85 PRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVI 131 (345)
T ss_pred ccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhH
Confidence 3 7889999995 7899999999999 999 69999999999987654
No 52
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.72 E-value=2.3e-17 Score=138.65 Aligned_cols=124 Identities=16% Similarity=0.192 Sum_probs=90.3
Q ss_pred ecCCCCCccceeccccCCCccceeEEccCCccccccccccCCccccCCCCcccCHHHHHHHHhCC-CEEEEcCChhhHhc
Q 030104 23 LCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSA 101 (183)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ 101 (183)
+|....+|+ ..++.++|.|+.+.. ..+.|.. ..++++++.++++++ .++||||++.||..
T Consensus 240 ~d~~~~~~~-~~~~~~~~~c~~~~~-~~~~~~~-----------------~~~~~~el~~~l~~~~~~lIDVR~~~E~~~ 300 (370)
T PRK05600 240 YDALTATTR-SFRVGADPARPLVTR-LRPSYEA-----------------ARTDTTSLIDATLNGSATLLDVREPHEVLL 300 (370)
T ss_pred EECCCCEEE-EEEecCCCCCCcccc-ccCcchh-----------------cccCHHHHHHHHhcCCeEEEECCCHHHhhh
Confidence 677777774 666677788765332 2233332 278899998888765 78999999999999
Q ss_pred cCCC---CceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHH-cCCCC-eeEccccHH
Q 030104 102 GHAT---GAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAG-ITDIAGGFA 172 (183)
Q Consensus 102 ghIp---gAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~-v~~l~GG~~ 172 (183)
|||| ||+|||+..+.. ..++ ......++++ +|||||.+|.||..++..|+ .||++ |++|.||+.
T Consensus 301 ghI~~~~gAinIPl~~l~~-----~~~~-~~~l~~~~~~-~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 301 KDLPEGGASLKLPLSAITD-----DADI-LHALSPIDGD-NVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred ccCCCCCccEeCcHHHhhc-----chhh-hhhccccCCC-cEEEECCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 9998 599999842110 0000 1122334454 89999999999999999999 99986 999999975
No 53
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.72 E-value=1.6e-17 Score=136.41 Aligned_cols=94 Identities=30% Similarity=0.435 Sum_probs=69.9
Q ss_pred CCEEEEcCChhhHhccCCCCceecCcccccCC---C-CC------------------CCHHHHHHHHhcCCCCCeEEEEc
Q 030104 87 GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS---G-MT------------------KNLKFVEEVSTRFRKHDEIIVGC 144 (183)
Q Consensus 87 ~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~---~-~~------------------~~~~~~~~~~~~l~~~~~ivv~c 144 (183)
..+|||||++.||..||||||+|||+...... + .. .-.+.+.++....+++++|||||
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvvyC 81 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADGPPQPLLYC 81 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEEEE
Confidence 35899999999999999999999999422110 0 00 01122333333345566799999
Q ss_pred C-CchHHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCC
Q 030104 145 Q-SGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPT 181 (183)
Q Consensus 145 ~-~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv 181 (183)
. +|.||..++++|. .|| +|++|+||+.+|...+.+.
T Consensus 82 ~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~ 119 (311)
T TIGR03167 82 WRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQ 119 (311)
T ss_pred CCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhh
Confidence 5 7899999999999 999 6999999999998876543
No 54
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.69 E-value=1.4e-16 Score=115.57 Aligned_cols=101 Identities=20% Similarity=0.181 Sum_probs=71.3
Q ss_pred cCHHHHHHHHhC---CCEEEEcCChhhHhccCCCCceecCcccccCCC----------CCCCHHHHHHHHhcCCCCCeEE
Q 030104 75 VPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSG----------MTKNLKFVEEVSTRFRKHDEII 141 (183)
Q Consensus 75 i~~~~~~~~~~~---~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~----------~~~~~~~~~~~~~~l~~~~~iv 141 (183)
|+++++.++++. +.+|||||+..+|..||||||+|+|+....... +....+.... +... ++++||
T Consensus 2 is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~-~~~~VV 79 (132)
T cd01446 2 IDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDR-LRRG-ESLAVV 79 (132)
T ss_pred cCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhcccchhhhhhcCCHHHHHH-HhcC-CCCeEE
Confidence 688899988864 489999999999999999999999986432111 1112222222 2222 578999
Q ss_pred EEcCCchH---------HHHHHHHHH-c--CCCCeeEccccHHHhhhC
Q 030104 142 VGCQSGKR---------SMMAATDLL-N--GFAGITDIAGGFAAWRQN 177 (183)
Q Consensus 142 v~c~~g~~---------s~~a~~~L~-~--G~~~v~~l~GG~~~W~~~ 177 (183)
|||.++.+ +..++..|. . |+.+|++|+||+.+|.+.
T Consensus 80 vYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~~ 127 (132)
T cd01446 80 VYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSSE 127 (132)
T ss_pred EEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHhh
Confidence 99998764 334444444 3 568999999999999763
No 55
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.59 E-value=1.5e-15 Score=121.47 Aligned_cols=102 Identities=25% Similarity=0.353 Sum_probs=85.2
Q ss_pred CCCcccCHHHHHHHHhCC-CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCch
Q 030104 70 GVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK 148 (183)
Q Consensus 70 ~~~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~ 148 (183)
.....++++++.+++.++ .++||+|+..||+.||..||++.+.. .+.+.++.+++..+.+ ++++|+.||.+|.
T Consensus 110 ~vG~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~-----tFrefP~~v~~~~~~~-~~KkVvmyCTGGI 183 (308)
T COG1054 110 NVGTYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIE-----TFREFPAWVEENLDLL-KDKKVVMYCTGGI 183 (308)
T ss_pred cccCccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecCccCCChh-----hhhhhHHHHHHHHHhc-cCCcEEEEcCCce
Confidence 446789999999988765 99999999999999999999999984 2233344555544444 5679999999999
Q ss_pred HHHHHHHHHH-cCCCCeeEccccHHHhhhC
Q 030104 149 RSMMAATDLL-NGFAGITDIAGGFAAWRQN 177 (183)
Q Consensus 149 ~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~ 177 (183)
|..++..+|. .||++|+.|+||+-.|.++
T Consensus 184 RCEKas~~m~~~GF~eVyhL~GGIl~Y~e~ 213 (308)
T COG1054 184 RCEKASAWMKENGFKEVYHLEGGILKYLED 213 (308)
T ss_pred eehhhHHHHHHhcchhhhcccchHHHHhhh
Confidence 9999999999 9999999999999988764
No 56
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.48 E-value=1.4e-13 Score=119.50 Aligned_cols=75 Identities=17% Similarity=0.271 Sum_probs=65.2
Q ss_pred HHHhCCCEEEEcCChhhHhccCCCC----ceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHH
Q 030104 82 ELLQAGHRYLDVRTPEEFSAGHATG----AINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDL 157 (183)
Q Consensus 82 ~~~~~~~~lIDvR~~~e~~~ghIpg----Avnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L 157 (183)
+.+..+.++||||++.||..+|||| |+|+|+ ..+......++++++||+||.+|.+|..++..|
T Consensus 402 ~~~~~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~------------~~l~~~~~~l~~~~~iivyC~~G~rS~~aa~~L 469 (482)
T PRK01269 402 SELPPDDVIIDIRSPDEQEDKPLKLEGVEVKSLPF------------YKLSTQFGDLDQSKTYLLYCDRGVMSRLQALYL 469 (482)
T ss_pred HhcCCCCEEEECCCHHHHhcCCCCCCCceEEECCH------------HHHHHHHhhcCCCCeEEEECCCCHHHHHHHHHH
Confidence 3335668999999999999999999 999999 444455566788899999999999999999999
Q ss_pred H-cCCCCeeEcc
Q 030104 158 L-NGFAGITDIA 168 (183)
Q Consensus 158 ~-~G~~~v~~l~ 168 (183)
. .||+||++|.
T Consensus 470 ~~~G~~nv~~y~ 481 (482)
T PRK01269 470 REQGFSNVKVYR 481 (482)
T ss_pred HHcCCccEEecC
Confidence 9 9999999875
No 57
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.36 E-value=5.8e-12 Score=100.54 Aligned_cols=111 Identities=23% Similarity=0.316 Sum_probs=86.1
Q ss_pred cccCHHHHHHHHhC-CCEEEEcC---------ChhhHhccCCCCceecCccccc-----CCCCCCCHHHHHHHHhc--CC
Q 030104 73 TSVPVRVAHELLQA-GHRYLDVR---------TPEEFSAGHATGAINVPYMYRV-----GSGMTKNLKFVEEVSTR--FR 135 (183)
Q Consensus 73 ~~i~~~~~~~~~~~-~~~lIDvR---------~~~e~~~ghIpgAvnip~~~~~-----~~~~~~~~~~~~~~~~~--l~ 135 (183)
..++++.+.+.+.+ +.+|||.. ...||..-|||||+++.++... ...++...+.+++.... ++
T Consensus 5 ~iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lGi~ 84 (286)
T KOG1529|consen 5 SIVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLGVD 84 (286)
T ss_pred cccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcCCC
Confidence 46778888887765 48999984 3567888999999999986432 12344444444444433 67
Q ss_pred CCCeEEEEcC--Cch-HHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCCC
Q 030104 136 KHDEIIVGCQ--SGK-RSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTEP 183 (183)
Q Consensus 136 ~~~~ivv~c~--~g~-~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~~ 183 (183)
++..+|||.+ .|+ .|.+++|+++ +|+++|++|+||+.+|...|+|+++
T Consensus 85 n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s 136 (286)
T KOG1529|consen 85 NGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDS 136 (286)
T ss_pred CCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCcccc
Confidence 8889999999 777 5779999999 9999999999999999999999863
No 58
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=2.2e-12 Score=104.81 Aligned_cols=97 Identities=23% Similarity=0.340 Sum_probs=73.4
Q ss_pred CCCcccCHHHHHHHHhCC-------CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhc---C---CC
Q 030104 70 GVPTSVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR---F---RK 136 (183)
Q Consensus 70 ~~~~~i~~~~~~~~~~~~-------~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~---l---~~ 136 (183)
.....|+++.++.++++. ++|||+|-+.||..|||+||+||+.. +++...+-. . .+
T Consensus 153 ~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~-----------~~~~~~f~~~~~~~~~~~ 221 (325)
T KOG3772|consen 153 QDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSK-----------ELLQDFFLLKDGVPSGSK 221 (325)
T ss_pred ccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccH-----------hhhhhhhccccccccccC
Confidence 455689999999999762 67999999999999999999999985 222222211 1 12
Q ss_pred CCeEEEEcC-CchHHHHHHHHHH-------------cCCCCeeEccccHHHhhhC
Q 030104 137 HDEIIVGCQ-SGKRSMMAATDLL-------------NGFAGITDIAGGFAAWRQN 177 (183)
Q Consensus 137 ~~~ivv~c~-~g~~s~~a~~~L~-------------~G~~~v~~l~GG~~~W~~~ 177 (183)
...+||+|. +..|+.++|..|+ +-|..+|+|+||+.+|...
T Consensus 222 ~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~ 276 (325)
T KOG3772|consen 222 RVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN 276 (325)
T ss_pred ceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence 356899998 6678888888775 2245789999999999754
No 59
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.27 E-value=2.3e-11 Score=97.15 Aligned_cols=132 Identities=19% Similarity=0.363 Sum_probs=95.8
Q ss_pred ceeEEccCCccccccccccCCcccc-CCCCc-----ccCHHHHHHHH--------hCCCEEEEcCChhhHh---------
Q 030104 44 DNIGFISSKILSFCPKASLRGNLEA-VGVPT-----SVPVRVAHELL--------QAGHRYLDVRTPEEFS--------- 100 (183)
Q Consensus 44 ~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~-----~i~~~~~~~~~--------~~~~~lIDvR~~~e~~--------- 100 (183)
..+.++++++.+|.........-.. .+... .++...+..+. ..++..||.|...+|.
T Consensus 115 ~~VslL~GG~~~Wk~~g~~~~s~~~~~p~~~~~~~~~~d~~il~~~edi~~n~~~~~~~~~~DaRs~grF~Gt~p~~~~~ 194 (286)
T KOG1529|consen 115 TKVSLLNGGFRAWKAAGGPVDSSKVETPYSPIVFVASLDNSILATLEDIPFNNLATKNFQYLDARSKGRFDGTEPEPRSG 194 (286)
T ss_pred cEEEEecCcHHHHHHcCCccccccccCCCCCccchhhcchHHHHHHhhccccccccccceeeeccccccccccCCCCccc
Confidence 6678899999999865443332211 11111 22222222221 2248999999999886
Q ss_pred --ccCCCCceecCcccccCC-CCCCCHHHHHHHHhc--CCCCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHHHh
Q 030104 101 --AGHATGAINVPYMYRVGS-GMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAW 174 (183)
Q Consensus 101 --~ghIpgAvnip~~~~~~~-~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W 174 (183)
.||||||+|+|+...+.. +....++.+...+.. +..++++|+-|..|..+...+-.|. .| .++.+|+|++.+|
T Consensus 195 ~~ggHIpGa~n~P~~~~~~~~g~~k~~edl~~~f~~~~l~~~~p~~~sC~~Gisa~~i~~al~r~g-~~~~lYdGS~~Ew 273 (286)
T KOG1529|consen 195 ATGGHIPGAINFPFDEVLDPDGFIKPAEDLKHLFAQKGLKLSKPVIVSCGTGISASIIALALERSG-PDAKLYDGSWTEW 273 (286)
T ss_pred CcCccCCCcccCChHHhcccccccCCHHHHHHHHHhcCcccCCCEEEeeccchhHHHHHHHHHhcC-CCcceecccHHHH
Confidence 689999999999887754 444446777776654 6678999999999999999999999 99 7899999999999
Q ss_pred hh
Q 030104 175 RQ 176 (183)
Q Consensus 175 ~~ 176 (183)
..
T Consensus 274 ~~ 275 (286)
T KOG1529|consen 274 AL 275 (286)
T ss_pred hh
Confidence 85
No 60
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=98.74 E-value=2.9e-08 Score=80.51 Aligned_cols=94 Identities=19% Similarity=0.332 Sum_probs=73.2
Q ss_pred CcccCHHHHHHHHhCC-------CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHh-c-CCCCCeEEE
Q 030104 72 PTSVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST-R-FRKHDEIIV 142 (183)
Q Consensus 72 ~~~i~~~~~~~~~~~~-------~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~-~-l~~~~~ivv 142 (183)
.+.|+++.++.++++. .+|||+|=+.||..|||-+||||.-. +.+...+- . +.-..-+|+
T Consensus 241 ~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~-----------~~l~~~F~hkplThp~aLif 309 (427)
T COG5105 241 IQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISST-----------KKLGLLFRHKPLTHPRALIF 309 (427)
T ss_pred hhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchH-----------HHHHHHHHhccccCceeEEE
Confidence 3579999999998764 56999999999999999999999974 44444433 2 222355888
Q ss_pred EcC-CchHHHHHHHHHH-cC------------CCCeeEccccHHHhhh
Q 030104 143 GCQ-SGKRSMMAATDLL-NG------------FAGITDIAGGFAAWRQ 176 (183)
Q Consensus 143 ~c~-~g~~s~~a~~~L~-~G------------~~~v~~l~GG~~~W~~ 176 (183)
.|. +..|+...|.+|+ .. |..|++|+||+.++-.
T Consensus 310 HCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~ 357 (427)
T COG5105 310 HCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYS 357 (427)
T ss_pred EeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhh
Confidence 998 6779999999996 32 4579999999998754
No 61
>COG2603 Predicted ATPase [General function prediction only]
Probab=97.53 E-value=0.00016 Score=58.51 Aligned_cols=98 Identities=28% Similarity=0.346 Sum_probs=62.9
Q ss_pred HHHHHHHHhCCCEEEEcCChhhHhccCCCCceecCcccccC-----CCCCC-CHHHHH-------------HHH---hcC
Q 030104 77 VRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVG-----SGMTK-NLKFVE-------------EVS---TRF 134 (183)
Q Consensus 77 ~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~-----~~~~~-~~~~~~-------------~~~---~~l 134 (183)
.+.+..++.++..+||||.+.||..|+.|+++|+|.....+ ..... ..+... ..+ ...
T Consensus 5 ~q~~~~~~~~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f 84 (334)
T COG2603 5 EQDYRALLLADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAF 84 (334)
T ss_pred HHHHHHHHhcCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45677777788899999999999999999999999842210 00000 000000 000 011
Q ss_pred CCCCeEEEEcC-CchHHHHHHHHH-H-cCCCCeeEccccHHHhh
Q 030104 135 RKHDEIIVGCQ-SGKRSMMAATDL-L-NGFAGITDIAGGFAAWR 175 (183)
Q Consensus 135 ~~~~~ivv~c~-~g~~s~~a~~~L-~-~G~~~v~~l~GG~~~W~ 175 (183)
-.+.++-++|. +|.||...+.+| . .|.+-+ -+.||+.+..
T Consensus 85 ~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~~~-r~iGGeKalr 127 (334)
T COG2603 85 QEENPVGILCARGGLRSKIVQKWLGYAAGIDYP-RVIGGEKALR 127 (334)
T ss_pred HHhCCcceeeccccchhHHHHHHHHHHHHhhhh-hhhchHHHHH
Confidence 23456666687 556999999999 5 887544 3678887653
No 62
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=97.32 E-value=0.0019 Score=46.90 Aligned_cols=86 Identities=19% Similarity=0.197 Sum_probs=52.6
Q ss_pred CcccCHHHHHHHHhCC-CEEEEcCChhhHhccC----------CCC--ceecCcccccCCCCCCCHHHHHHHHhcC-CCC
Q 030104 72 PTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGH----------ATG--AINVPYMYRVGSGMTKNLKFVEEVSTRF-RKH 137 (183)
Q Consensus 72 ~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~gh----------Ipg--Avnip~~~~~~~~~~~~~~~~~~~~~~l-~~~ 137 (183)
...++.+++..+.+.+ -.|||.|+..|..... -+| -+++|+.. ... +.+.+......+ ..+
T Consensus 12 s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~---~~~--~~~~v~~f~~~~~~~~ 86 (135)
T TIGR01244 12 SPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTA---GDI--TPDDVETFRAAIGAAE 86 (135)
T ss_pred cCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCC---CCC--CHHHHHHHHHHHHhCC
Confidence 3567888888887778 7899999977643211 123 25666531 111 223333332222 235
Q ss_pred CeEEEEcCCchHHHHHHHHHH--cCCC
Q 030104 138 DEIIVGCQSGKRSMMAATDLL--NGFA 162 (183)
Q Consensus 138 ~~ivv~c~~g~~s~~a~~~L~--~G~~ 162 (183)
++|+++|.+|.|+..++..+. .|.+
T Consensus 87 ~pvL~HC~sG~Rt~~l~al~~~~~g~~ 113 (135)
T TIGR01244 87 GPVLAYCRSGTRSSLLWGFRQAAEGVP 113 (135)
T ss_pred CCEEEEcCCChHHHHHHHHHHHHcCCC
Confidence 799999999999876665444 6764
No 63
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=97.28 E-value=0.0024 Score=44.87 Aligned_cols=76 Identities=14% Similarity=0.166 Sum_probs=40.0
Q ss_pred cccCHHHHHHHHhCC-CEEEEcCChhhHhccCCCC--------------ceecCcccccCCCCCCCHHHHHHHHhcCC-C
Q 030104 73 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATG--------------AINVPYMYRVGSGMTKNLKFVEEVSTRFR-K 136 (183)
Q Consensus 73 ~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpg--------------Avnip~~~~~~~~~~~~~~~~~~~~~~l~-~ 136 (183)
..++++++.++.+.| -.||+.|+..|-. +-|. -+|+|+.. .....+.+......+. .
T Consensus 13 ~Q~~~~d~~~la~~GfktVInlRpd~E~~--~qp~~~~~~~~a~~~Gl~y~~iPv~~-----~~~~~~~v~~f~~~l~~~ 85 (110)
T PF04273_consen 13 GQPSPEDLAQLAAQGFKTVINLRPDGEEP--GQPSSAEEAAAAEALGLQYVHIPVDG-----GAITEEDVEAFADALESL 85 (110)
T ss_dssp CS--HHHHHHHHHCT--EEEE-S-TTSTT--T-T-HHCHHHHHHHCT-EEEE----T-----TT--HHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCCC--CCCCHHHHHHHHHHcCCeEEEeecCC-----CCCCHHHHHHHHHHHHhC
Confidence 467899999999999 6899999876521 1111 36777631 1122333343333332 3
Q ss_pred CCeEEEEcCCchHHHHHHH
Q 030104 137 HDEIIVGCQSGKRSMMAAT 155 (183)
Q Consensus 137 ~~~ivv~c~~g~~s~~a~~ 155 (183)
.++|.+||.+|.|+...|.
T Consensus 86 ~~Pvl~hC~sG~Ra~~l~~ 104 (110)
T PF04273_consen 86 PKPVLAHCRSGTRASALWA 104 (110)
T ss_dssp TTSEEEE-SCSHHHHHHHH
T ss_pred CCCEEEECCCChhHHHHHH
Confidence 5699999999999975543
No 64
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=96.11 E-value=0.00077 Score=55.84 Aligned_cols=83 Identities=8% Similarity=0.050 Sum_probs=54.0
Q ss_pred ccCHHHHHHHHhCCCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCC--chHH-
Q 030104 74 SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQS--GKRS- 150 (183)
Q Consensus 74 ~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~--g~~s- 150 (183)
.-+++++.+.+.....++|+|....|..+||+|++|+|... -..++.++.. .+..+++++.-.. +...
T Consensus 15 i~~~~~~~~~l~~~~~~~d~rg~i~~a~egIngtis~~~~~--------~~~~~~~l~~-~~~~~~i~l~~~~~~~~~f~ 85 (314)
T PRK00142 15 IEDPEAFRDEHLALCKSLGLKGRILVAEEGINGTVSGTIEQ--------TEAYMAWLKA-DPRFADIRFKISEDDGHAFP 85 (314)
T ss_pred CCCHHHHHHHHHHHHHHcCCeeEEEEcCCCceEEEEecHHH--------HHHHHHHHhh-CcCCCCceEEeccccCCCcc
Confidence 34567888777777789999999999999999999999831 0122222222 1124555555433 2333
Q ss_pred ---HHHHHHHH-cCCC-Cee
Q 030104 151 ---MMAATDLL-NGFA-GIT 165 (183)
Q Consensus 151 ---~~a~~~L~-~G~~-~v~ 165 (183)
.++...|. .|++ ++.
T Consensus 86 ~l~~~~~~eLv~~G~d~~v~ 105 (314)
T PRK00142 86 RLSVKVRKEIVALGLDDDID 105 (314)
T ss_pred cceeeeeeeeeecCCCCCCC
Confidence 56777777 8885 554
No 65
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=96.10 E-value=0.0021 Score=56.52 Aligned_cols=95 Identities=18% Similarity=0.178 Sum_probs=65.9
Q ss_pred CCCcccCHHHHHHHHhCCCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcC-----CCCCeEEEEc
Q 030104 70 GVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-----RKHDEIIVGC 144 (183)
Q Consensus 70 ~~~~~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~ivv~c 144 (183)
...+.++++++..+ ....++|.|...||..+|+++++|+|+. ..+..+++. ..+ ..+++++++.
T Consensus 619 e~~prmsAedl~~~--~~l~v~d~r~~~ef~r~~~s~s~nip~~--------~~ea~l~~~-~~l~~~~~~~~~~~v~~~ 687 (725)
T KOG1093|consen 619 EHCPRISAEDLIWL--KMLYVLDTRQESEFQREHFSDSINIPFN--------NHEADLDWL-RFLPGIVCSEGKKCVVVG 687 (725)
T ss_pred hcCccccHHHHHHH--HHHHHHhHHHHHHHHHhhccccccCCcc--------chHHHHHHh-hcchHhHHhhCCeEEEec
Confidence 34456777776655 4478999999999999999999999994 111222221 111 2456667666
Q ss_pred CCchHHHHHHHHHH-cCCCCeeEccccHHHhh
Q 030104 145 QSGKRSMMAATDLL-NGFAGITDIAGGFAAWR 175 (183)
Q Consensus 145 ~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~ 175 (183)
.....+.+....+. +-+.++.++++|+.+..
T Consensus 688 ~~~K~~~e~~~~~~~mk~p~~cil~~~~~~~~ 719 (725)
T KOG1093|consen 688 KNDKHAAERLTELYVMKVPRICILHDGFNNID 719 (725)
T ss_pred cchHHHHHHhhHHHHhcccHHHHHHHHHhhcC
Confidence 66666767777777 77888889999998543
No 66
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=94.88 E-value=0.056 Score=46.58 Aligned_cols=82 Identities=18% Similarity=0.264 Sum_probs=50.4
Q ss_pred CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHh--------cCC-----CCCeEEEEcCCch------
Q 030104 88 HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST--------RFR-----KHDEIIVGCQSGK------ 148 (183)
Q Consensus 88 ~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~--------~l~-----~~~~ivv~c~~g~------ 148 (183)
++|||+|+.++|..||+-.|.|+.-.- +...+..++.... .+. .+....+.. +|.
T Consensus 327 FFiVDcRpaeqynaGHlstaFhlDc~l-----mlqeP~~Fa~av~sLl~aqrqtie~~s~aggeHlcfmG-sGr~EED~Y 400 (669)
T KOG3636|consen 327 FFIVDCRPAEQYNAGHLSTAFHLDCVL-----MLQEPEKFAIAVNSLLCAQRQTIERDSNAGGEHLCFMG-SGRDEEDNY 400 (669)
T ss_pred EEEEeccchhhcccccchhhhcccHHH-----HhcCHHHHHHHHHHHHHHHHHhhhccccCCcceEEEec-cCcchHHHH
Confidence 789999999999999999999987631 2222332222111 122 224455544 443
Q ss_pred HHHHHHHHHHcCCCCeeEccccHHHhh
Q 030104 149 RSMMAATDLLNGFAGITDIAGGFAAWR 175 (183)
Q Consensus 149 ~s~~a~~~L~~G~~~v~~l~GG~~~W~ 175 (183)
.-..+|.+|+.+-..|.++.||+.+..
T Consensus 401 mnMviA~FlQKnk~yVS~~~GGy~~lh 427 (669)
T KOG3636|consen 401 MNMVIAMFLQKNKLYVSFVQGGYKKLH 427 (669)
T ss_pred HHHHHHHHHhcCceEEEEecchHHHHH
Confidence 122345555545457999999998765
No 67
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=94.05 E-value=0.17 Score=36.17 Aligned_cols=79 Identities=19% Similarity=0.214 Sum_probs=42.4
Q ss_pred HHHHHhCC-CEEEEcCChhhHhc-cCCCCceecCcccccCCCCCCCHHHHHHHH----hcCCCCCeEEEEcCCch-HHHH
Q 030104 80 AHELLQAG-HRYLDVRTPEEFSA-GHATGAINVPYMYRVGSGMTKNLKFVEEVS----TRFRKHDEIIVGCQSGK-RSMM 152 (183)
Q Consensus 80 ~~~~~~~~-~~lIDvR~~~e~~~-ghIpgAvnip~~~~~~~~~~~~~~~~~~~~----~~l~~~~~ivv~c~~g~-~s~~ 152 (183)
+..+.+.+ ..||+++...+... ..+ .-+++|+.+.... ...+.+.... .....+++|+|.|..|. ||..
T Consensus 19 ~~~l~~~gi~~Vi~l~~~~~~~~~~~~-~~~~ipi~D~~~~---~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~ 94 (138)
T smart00195 19 LALLKKLGITHVINVTNEVPNLNKKGF-TYLGVPILDNTET---KISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSAT 94 (138)
T ss_pred HHHHHHcCCCEEEEccCCCCCCCCCCC-EEEEEECCCCCCC---ChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHH
Confidence 34444556 68999987654321 111 2356776431111 1112222222 22456789999999986 7763
Q ss_pred --HHHHHH-cCCC
Q 030104 153 --AATDLL-NGFA 162 (183)
Q Consensus 153 --a~~~L~-~G~~ 162 (183)
+++.+. .|++
T Consensus 95 v~~~yl~~~~~~~ 107 (138)
T smart00195 95 LIIAYLMKYRNLS 107 (138)
T ss_pred HHHHHHHHHhCCC
Confidence 444455 7764
No 68
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=93.85 E-value=0.62 Score=34.57 Aligned_cols=94 Identities=19% Similarity=0.291 Sum_probs=44.6
Q ss_pred CCCcccCHHHHHHHHhCC-CEEEEcCChhhHhcc---CCCCc--eecCcccccCC------------------------C
Q 030104 70 GVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAG---HATGA--INVPYMYRVGS------------------------G 119 (183)
Q Consensus 70 ~~~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~g---hIpgA--vnip~~~~~~~------------------------~ 119 (183)
.....++.++...+.+-+ -.|||.|++.|.... .++|. +|+|+...... .
T Consensus 25 ~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~ 104 (164)
T PF13350_consen 25 GNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFYRE 104 (164)
T ss_dssp S--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHHHHHHHH
T ss_pred CCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHHHHHHHH
Confidence 445668888888887666 789999999998643 34454 45665321110 0
Q ss_pred -CCCCHHHHHHHHhcC-CCCCeEEEEcCCch-HHH-HHHHHHH-cCCCC
Q 030104 120 -MTKNLKFVEEVSTRF-RKHDEIIVGCQSGK-RSM-MAATDLL-NGFAG 163 (183)
Q Consensus 120 -~~~~~~~~~~~~~~l-~~~~~ivv~c~~g~-~s~-~a~~~L~-~G~~~ 163 (183)
.......+...+..+ +...++++.|..|. |-. .++..|. +|.+.
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll~~lGV~~ 153 (164)
T PF13350_consen 105 MLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLLSLLGVPD 153 (164)
T ss_dssp GGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHHHHTT--H
T ss_pred HHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHHHHcCCCH
Confidence 111233444444432 33369999999987 444 4555556 89864
No 69
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=93.82 E-value=0.023 Score=45.77 Aligned_cols=99 Identities=20% Similarity=0.218 Sum_probs=56.4
Q ss_pred ccCHHHHHHHHhCC-CEEEEcCChhhHhccCCCCceecCcccccCC----CCCCCHHHHHHHHh-cCC----CCCeEEEE
Q 030104 74 SVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGS----GMTKNLKFVEEVST-RFR----KHDEIIVG 143 (183)
Q Consensus 74 ~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~----~~~~~~~~~~~~~~-~l~----~~~~ivv~ 143 (183)
.++.+++.+.+..+ .+++|+|+ +..||.+|+|+-+..++.. +...-...+..... ... +...+|.|
T Consensus 5 ~~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~valPalmlrrl~~g~l~~ra~~p~~~d~~~~~~~c~~v~vily 80 (343)
T KOG1717|consen 5 SKSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVALPALMLRRLTGGNLPVRALFPRSCDDKRFPARCGTVTVILY 80 (343)
T ss_pred HHHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcchHHHHHHHhCCCCcceeccCCccccccccccCCcceeeec
Confidence 45677888877655 89999999 5689999999877422200 00000000000000 001 12568888
Q ss_pred cCCch------HHH----HHHHHHH-cCCCCeeEccccHHHhhhC
Q 030104 144 CQSGK------RSM----MAATDLL-NGFAGITDIAGGFAAWRQN 177 (183)
Q Consensus 144 c~~g~------~s~----~a~~~L~-~G~~~v~~l~GG~~~W~~~ 177 (183)
+.+.. .+. ...+.++ .|+ .++.|.|||..++.+
T Consensus 81 D~~~~e~e~~~~~~s~Lg~ll~kl~~~g~-~a~yL~ggF~~fq~e 124 (343)
T KOG1717|consen 81 DESSAEWEEETGAESVLGLLLKKLKDEGC-SARYLSGGFSKFQAE 124 (343)
T ss_pred ccccccccccchhhhHHHHHHHHHHhcCc-chhhhhcccchhhhh
Confidence 87622 111 1224455 787 689999999887654
No 70
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=93.81 E-value=0.28 Score=40.67 Aligned_cols=95 Identities=17% Similarity=0.093 Sum_probs=56.9
Q ss_pred eEEccCCccccccccccCC-------ccccCCCCcccCHHHHHHHHhC-CCEEEEcCChhhHhc---cCCC-CceecCcc
Q 030104 46 IGFISSKILSFCPKASLRG-------NLEAVGVPTSVPVRVAHELLQA-GHRYLDVRTPEEFSA---GHAT-GAINVPYM 113 (183)
Q Consensus 46 ~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~i~~~~~~~~~~~-~~~lIDvR~~~e~~~---ghIp-gAvnip~~ 113 (183)
+..+.++|.+|........ ........+.+...++.+.+.+ +..|||+|+..+|.. |||+ |.. |-.
T Consensus 102 v~~L~GG~~aw~~~~~~~~~~~~~~~~~~vl~g~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~~~~q--psq 179 (311)
T TIGR03167 102 VPRLEGGYKAYRRFVIDQLEELPQPFPLIVLGGMTGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALGLGPQ--PSQ 179 (311)
T ss_pred EEEecChHHHHHHhhhhhhhccCCCCceeccCCCCCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCCCCCC--Cch
Confidence 4567899998875331111 1111223456677777776654 489999999999987 8888 432 221
Q ss_pred cccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchH
Q 030104 114 YRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR 149 (183)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~ 149 (183)
.. ....+...+..++++.+|+|-|.+...
T Consensus 180 ~~-------fe~~L~~~l~~~~~~~~i~~e~es~~i 208 (311)
T TIGR03167 180 KR-------FENALAEALRRLDPGRPIFVEDESRRI 208 (311)
T ss_pred HH-------HHHHHHHHHHhCCCCceEEEEeCchhh
Confidence 00 113333333345777788888887653
No 71
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=93.21 E-value=0.29 Score=34.80 Aligned_cols=82 Identities=20% Similarity=0.210 Sum_probs=41.8
Q ss_pred HHHHHhCC-CEEEEcCChhhHhccCCCC--ceecCcccccCCCCCCCHHH-HHHHHhcCCCCCeEEEEcCCch-HHHHH-
Q 030104 80 AHELLQAG-HRYLDVRTPEEFSAGHATG--AINVPYMYRVGSGMTKNLKF-VEEVSTRFRKHDEIIVGCQSGK-RSMMA- 153 (183)
Q Consensus 80 ~~~~~~~~-~~lIDvR~~~e~~~ghIpg--Avnip~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ivv~c~~g~-~s~~a- 153 (183)
...+.+.+ ..|||+++..++..-+.+| -.++|+.+.-.......... ++........+++|+|+|..|. ||..+
T Consensus 20 ~~~L~~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~ 99 (139)
T cd00127 20 KELLKKLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLV 99 (139)
T ss_pred HHHHHHcCCCEEEEcccCCCCcccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHHH
Confidence 33444456 6899999988752222222 35666643221111100111 1222222345689999999987 77633
Q ss_pred -HHHHH-cCC
Q 030104 154 -ATDLL-NGF 161 (183)
Q Consensus 154 -~~~L~-~G~ 161 (183)
+..+. .|+
T Consensus 100 ~~~l~~~~~~ 109 (139)
T cd00127 100 IAYLMKTLGL 109 (139)
T ss_pred HHHHHHHcCC
Confidence 33444 554
No 72
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.16 E-value=1.1 Score=31.93 Aligned_cols=83 Identities=18% Similarity=0.141 Sum_probs=51.0
Q ss_pred CCCcccCHHHHHHHHhCC-CEEEEcCChhhHh-------------ccCCCCceecCcccccCCCCCCCHHHHHHHHhcC-
Q 030104 70 GVPTSVPVRVAHELLQAG-HRYLDVRTPEEFS-------------AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF- 134 (183)
Q Consensus 70 ~~~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~-------------~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l- 134 (183)
+....++++++.++...+ ..||--|+..|-. ..-+. -.+||.. +.-..++.++.....+
T Consensus 11 sVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~-y~~iPV~-----~~~iT~~dV~~f~~Al~ 84 (130)
T COG3453 11 SVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLT-YTHIPVT-----GGGITEADVEAFQRALD 84 (130)
T ss_pred eecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCc-eEEeecC-----CCCCCHHHHHHHHHHHH
Confidence 455678899999998888 5689999865532 11111 2455552 1112233344333333
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHH
Q 030104 135 RKHDEIIVGCQSGKRSMMAATDLL 158 (183)
Q Consensus 135 ~~~~~ivv~c~~g~~s~~a~~~L~ 158 (183)
..+.+|+.||++|.||...+..-.
T Consensus 85 eaegPVlayCrsGtRs~~ly~~~~ 108 (130)
T COG3453 85 EAEGPVLAYCRSGTRSLNLYGLGE 108 (130)
T ss_pred HhCCCEEeeecCCchHHHHHHHHH
Confidence 246799999999999986665444
No 73
>PLN02727 NAD kinase
Probab=90.79 E-value=1.1 Score=42.22 Aligned_cols=83 Identities=14% Similarity=0.115 Sum_probs=52.9
Q ss_pred CCcccCHHHHHHHHhCC-CEEEEcCChhhHhccCCC------------CceecCcccccCCCCCCCHHHHHHHHhcC-C-
Q 030104 71 VPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHAT------------GAINVPYMYRVGSGMTKNLKFVEEVSTRF-R- 135 (183)
Q Consensus 71 ~~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIp------------gAvnip~~~~~~~~~~~~~~~~~~~~~~l-~- 135 (183)
+...+++++++.+.+.| -.||+.|+..|- .+..+ .-+|+|+. .......+.+.+..+.+ +
T Consensus 265 rsgQpspe~la~LA~~GfKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs----~~~apt~EqVe~fa~~l~~s 339 (986)
T PLN02727 265 RGGQVTEEGLKWLLEKGFKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVE----VRTAPSAEQVEKFASLVSDS 339 (986)
T ss_pred EeCCCCHHHHHHHHHCCCeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecC----CCCCCCHHHHHHHHHHHHhh
Confidence 34578999999998888 679999997762 22221 13577762 11223446666665555 3
Q ss_pred CCCeEEEEcCCchHHH--HHHHHHH
Q 030104 136 KHDEIIVGCQSGKRSM--MAATDLL 158 (183)
Q Consensus 136 ~~~~ivv~c~~g~~s~--~a~~~L~ 158 (183)
..+||+++|.+|.+.. .++.++.
T Consensus 340 lpkPVLvHCKSGarRAGamvA~yl~ 364 (986)
T PLN02727 340 SKKPIYLHSKEGVWRTSAMVSRWKQ 364 (986)
T ss_pred cCCCEEEECCCCCchHHHHHHHHHH
Confidence 3689999999999433 4444443
No 74
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=88.82 E-value=1.1 Score=31.66 Aligned_cols=80 Identities=18% Similarity=0.228 Sum_probs=41.6
Q ss_pred HHhCC-CEEEEcCChhhH---hccCCCCceecCcccccCCCCCCCHHHHHHHHhc-CCCCCeEEEEcCCch-HHHH--HH
Q 030104 83 LLQAG-HRYLDVRTPEEF---SAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR-FRKHDEIIVGCQSGK-RSMM--AA 154 (183)
Q Consensus 83 ~~~~~-~~lIDvR~~~e~---~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~-l~~~~~ivv~c~~g~-~s~~--a~ 154 (183)
+.+.+ ..||+++...+. ....--.-+++|..+.........-..+.+.+.. ..++.+|+|+|..|. ||.. ++
T Consensus 14 l~~~~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~a 93 (133)
T PF00782_consen 14 LKNLGITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAA 93 (133)
T ss_dssp HHHTTEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHH
T ss_pred HHHCCCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHHH
Confidence 33456 578999886543 2222223466666431212112222222233322 456789999999987 7663 33
Q ss_pred HHHH-cCCC
Q 030104 155 TDLL-NGFA 162 (183)
Q Consensus 155 ~~L~-~G~~ 162 (183)
..+. .|++
T Consensus 94 yLm~~~~~~ 102 (133)
T PF00782_consen 94 YLMKKNGMS 102 (133)
T ss_dssp HHHHHHTSS
T ss_pred HHHHHcCCC
Confidence 3444 6663
No 75
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=87.04 E-value=1.6 Score=32.84 Aligned_cols=82 Identities=21% Similarity=0.289 Sum_probs=35.5
Q ss_pred HHHHHHhCC-CEEEEcCChhhHhccCCCC-----------ceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCC
Q 030104 79 VAHELLQAG-HRYLDVRTPEEFSAGHATG-----------AINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQS 146 (183)
Q Consensus 79 ~~~~~~~~~-~~lIDvR~~~e~~~ghIpg-----------Avnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~ 146 (183)
++.++.+.+ ..||=.=+..|...-.+|+ -+++|+.+.--+......+.+.++...+..+++|++.|.+
T Consensus 63 DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L~~g~~V~vHC~G 142 (168)
T PF05706_consen 63 DLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAAAWQILEELAARLENGRKVLVHCRG 142 (168)
T ss_dssp HHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HHHHHHHHHHHHHHHHTT--EEEE-SS
T ss_pred HHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHHHHHHHHHHHHHHHcCCEEEEECCC
Confidence 455565566 3344455666666555553 2467764322221100112233333446778999999998
Q ss_pred ch-HHHH-HHHHHH-cC
Q 030104 147 GK-RSMM-AATDLL-NG 160 (183)
Q Consensus 147 g~-~s~~-a~~~L~-~G 160 (183)
|. |+.. |+..|. +|
T Consensus 143 GlGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 143 GLGRTGLVAACLLLELG 159 (168)
T ss_dssp SSSHHHHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHHc
Confidence 86 7664 454554 55
No 76
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=86.97 E-value=0.92 Score=38.03 Aligned_cols=82 Identities=10% Similarity=-0.056 Sum_probs=48.6
Q ss_pred eecCCCCCcccee-ccccCCCccceeEE-----c----cCCccccccccccCCccccCCCCcccCHHHHHHHHh------
Q 030104 22 VLCPHGNNRRGLL-SLTVDQQRCDNIGF-----I----SSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQ------ 85 (183)
Q Consensus 22 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----l----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------ 85 (183)
.+|-.+.+++... ...++|.|+..... + .+++..+|.. ............++++++.+.++
T Consensus 219 ~~d~~~~~~~~~~~~~~~~~~Cp~Cg~~~~~~~~~~~~~~~~~~lcg~---~~~~~~~~~~~~i~~~~~~~~l~~~~~~~ 295 (339)
T PRK07688 219 SFDVWKNEYSCMNVQKLKKDNCPSCGEKALYPYLNYENTTKTAVLCGR---NTVQIRPPHKEEYDLEELAELLRDRGLDV 295 (339)
T ss_pred EEECCCCeEEEEEecCCCCCCCCCCCCCCCccccchhhccchhhhcCc---cccccccCCcCccCHHHHHHHHHhccccc
Confidence 5888888887765 33456777533211 1 0112234421 01011123446789998887772
Q ss_pred -CCCEEEEcCChhhHhccCCCCc
Q 030104 86 -AGHRYLDVRTPEEFSAGHATGA 107 (183)
Q Consensus 86 -~~~~lIDvR~~~e~~~ghIpgA 107 (183)
.+.++||||++. |+..++|+-
T Consensus 296 ~~~~~ll~vr~~~-~~~~~~~~g 317 (339)
T PRK07688 296 NVNPYLLSFSLEE-KRLVLFKDG 317 (339)
T ss_pred CCCcEEEEEecCC-eEEEEEcCC
Confidence 358899999988 999999853
No 77
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=85.20 E-value=1.4 Score=33.46 Aligned_cols=29 Identities=38% Similarity=0.624 Sum_probs=19.7
Q ss_pred CCCCCeEEEEcCCch-HHH--HHHHHHH-cCCC
Q 030104 134 FRKHDEIIVGCQSGK-RSM--MAATDLL-NGFA 162 (183)
Q Consensus 134 l~~~~~ivv~c~~g~-~s~--~a~~~L~-~G~~ 162 (183)
+.++++|+|.|..|. ||. .+|+.+. .|..
T Consensus 102 ~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~ 134 (180)
T COG2453 102 LSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLS 134 (180)
T ss_pred HhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCC
Confidence 466779999999886 666 3444555 4543
No 78
>PRK12361 hypothetical protein; Provisional
Probab=81.70 E-value=2.9 Score=37.24 Aligned_cols=72 Identities=18% Similarity=0.236 Sum_probs=39.5
Q ss_pred HHHHHHHHhCC-CEEEEcCChhhHh-ccCCC---CceecCcccccCCCCCCCHHHHHHHHhc----CCCCCeEEEEcCCc
Q 030104 77 VRVAHELLQAG-HRYLDVRTPEEFS-AGHAT---GAINVPYMYRVGSGMTKNLKFVEEVSTR----FRKHDEIIVGCQSG 147 (183)
Q Consensus 77 ~~~~~~~~~~~-~~lIDvR~~~e~~-~ghIp---gAvnip~~~~~~~~~~~~~~~~~~~~~~----l~~~~~ivv~c~~g 147 (183)
+.+...+.+.+ ..|||++.+.+.. ....+ .-+++|..+... ...+.+.+..+. ...+.+|+|.|..|
T Consensus 110 a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~----p~~~~l~~a~~~i~~~~~~~~~VlVHC~~G 185 (547)
T PRK12361 110 PADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSV----PTLAQLNQAINWIHRQVRANKSVVVHCALG 185 (547)
T ss_pred cccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCCC----CcHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 34555555556 7899999543221 11112 246778753221 122333433333 34578999999988
Q ss_pred h-HHHH
Q 030104 148 K-RSMM 152 (183)
Q Consensus 148 ~-~s~~ 152 (183)
. ||..
T Consensus 186 ~sRSa~ 191 (547)
T PRK12361 186 RGRSVL 191 (547)
T ss_pred CCcHHH
Confidence 7 6663
No 79
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=79.64 E-value=5.8 Score=29.65 Aligned_cols=31 Identities=26% Similarity=0.540 Sum_probs=23.5
Q ss_pred CCCCeEEEEcCCch---HHHHHHHHHH-cCCCCeeE
Q 030104 135 RKHDEIIVGCQSGK---RSMMAATDLL-NGFAGITD 166 (183)
Q Consensus 135 ~~~~~ivv~c~~g~---~s~~a~~~L~-~G~~~v~~ 166 (183)
.+..+|+|+|..|+ .+..++++|. .|++ |.+
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v 57 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTV 57 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEE
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEE
Confidence 67789999999877 5668999999 9995 654
No 80
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=78.94 E-value=2.1 Score=31.81 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=22.5
Q ss_pred CCCCeEEEEc-C----CchHHHHHHHHHH-cCCCCeeEccccHHH
Q 030104 135 RKHDEIIVGC-Q----SGKRSMMAATDLL-NGFAGITDIAGGFAA 173 (183)
Q Consensus 135 ~~~~~ivv~c-~----~g~~s~~a~~~L~-~G~~~v~~l~GG~~~ 173 (183)
+++.++++++ + .|.....++..|+ +|..++.+||||-..
T Consensus 98 ~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs 142 (170)
T PF09992_consen 98 TADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSS 142 (170)
T ss_dssp -TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG-
T ss_pred eCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcce
Confidence 4455666655 4 2567778999999 999999999998653
No 81
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=78.23 E-value=13 Score=27.72 Aligned_cols=69 Identities=17% Similarity=0.251 Sum_probs=35.4
Q ss_pred HHHHHHhCC-CEEEEcCCh----hhHhccCCCCceecCcccccCCCCCCCHH----HHH---HHHhc-CCCCCeEEEEcC
Q 030104 79 VAHELLQAG-HRYLDVRTP----EEFSAGHATGAINVPYMYRVGSGMTKNLK----FVE---EVSTR-FRKHDEIIVGCQ 145 (183)
Q Consensus 79 ~~~~~~~~~-~~lIDvR~~----~e~~~ghIpgAvnip~~~~~~~~~~~~~~----~~~---~~~~~-l~~~~~ivv~c~ 145 (183)
.++.+.+.+ ..||.+..+ +.+..-+|. -.++|+.+ +.....+ +++ ..... +.++.+|+|.|.
T Consensus 32 ~l~~L~~~gI~~Iv~l~~~~~~~~~~~~~gi~-~~~~p~~D----~~~P~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~ 106 (166)
T PTZ00242 32 YIKELQRYNVTHLVRVCGPTYDAELLEKNGIE-VHDWPFDD----GAPPPKAVIDNWLRLLDQEFAKQSTPPETIAVHCV 106 (166)
T ss_pred HHHHHHhCCCeEEEecCCCCCCHHHHHHCCCE-EEecCCCC----CCCCCHHHHHHHHHHHHHHHHhhccCCCeEEEECC
Confidence 445565666 567777432 344433442 34556532 1112222 222 22211 245789999999
Q ss_pred Cch-HHHH
Q 030104 146 SGK-RSMM 152 (183)
Q Consensus 146 ~g~-~s~~ 152 (183)
.|. ||..
T Consensus 107 aGigRSgt 114 (166)
T PTZ00242 107 AGLGRAPI 114 (166)
T ss_pred CCCCHHHH
Confidence 886 7664
No 82
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=73.79 E-value=8.9 Score=30.63 Aligned_cols=78 Identities=15% Similarity=0.247 Sum_probs=41.0
Q ss_pred HHHHHhCC-CEEEEcCCh----hhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhc----CCCCCeEEEEcCCch-H
Q 030104 80 AHELLQAG-HRYLDVRTP----EEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR----FRKHDEIIVGCQSGK-R 149 (183)
Q Consensus 80 ~~~~~~~~-~~lIDvR~~----~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~----l~~~~~ivv~c~~g~-~ 149 (183)
++++...+ ..||++.++ .+|..-.|. -.++|+. ++.....+.+.++... +..+.+|+|.|..|. |
T Consensus 109 l~eLk~~gV~~lVrlcE~~Yd~~~~~~~GI~-~~~lpip----Dg~aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGR 183 (241)
T PTZ00393 109 IKEMKNYNVTDLVRTCERTYNDGEITSAGIN-VHELIFP----DGDAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGR 183 (241)
T ss_pred HHHHHHcCCCEEEECCCCCCCHHHHHHcCCe-EEEeecC----CCCCCCHHHHHHHHHHHHHHHhcCCeEEEECCCCCCH
Confidence 44444455 567777542 233322221 1345553 2223333444433333 356789999999886 6
Q ss_pred HH-HHHHHHH-cCCC
Q 030104 150 SM-MAATDLL-NGFA 162 (183)
Q Consensus 150 s~-~a~~~L~-~G~~ 162 (183)
+. .++..|. .|++
T Consensus 184 TGtl~AayLI~~Gms 198 (241)
T PTZ00393 184 APVLASIVLIEFGMD 198 (241)
T ss_pred HHHHHHHHHHHcCCC
Confidence 65 4555555 7764
No 83
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=72.36 E-value=14 Score=31.18 Aligned_cols=61 Identities=16% Similarity=0.125 Sum_probs=34.9
Q ss_pred eEEccCCcccccccccc-------CCccccCCCCcccCHHHH-HHHHhCCCEEEEcCChhhHhc---cCCCC
Q 030104 46 IGFISSKILSFCPKASL-------RGNLEAVGVPTSVPVRVA-HELLQAGHRYLDVRTPEEFSA---GHATG 106 (183)
Q Consensus 46 ~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~-~~~~~~~~~lIDvR~~~e~~~---ghIpg 106 (183)
+..+.++|.+|...... ...+......+.....++ .++.+.+..+||+|...+|.. |++++
T Consensus 116 v~~L~GG~~awr~~~~~~~~~~~~~~~~ivl~G~TGsGKT~iL~~L~~~~~~vlDlE~~aehrGS~fG~~~~ 187 (345)
T PRK11784 116 VPRLEGGYKAYRRFVIDTLEEAPAQFPLVVLGGNTGSGKTELLQALANAGAQVLDLEGLANHRGSSFGRLGG 187 (345)
T ss_pred cEEEcCCHHHHHHhhHHHHhhhcccCceEecCCCCcccHHHHHHHHHhcCCeEEECCchhhhccccccCCCC
Confidence 35788999999853210 011111222233344444 444445688999999999873 45544
No 84
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=72.12 E-value=11 Score=29.08 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=25.1
Q ss_pred CCCCCeEEEEcCCch---HHHHHHHHHH-cCCCCeeEc
Q 030104 134 FRKHDEIIVGCQSGK---RSMMAATDLL-NGFAGITDI 167 (183)
Q Consensus 134 l~~~~~ivv~c~~g~---~s~~a~~~L~-~G~~~v~~l 167 (183)
+++.++|+|+|..|+ ++..++++|. .|+ .|+++
T Consensus 42 ~~~~~~v~vl~G~GNNGGDGlv~AR~L~~~~v-~V~~~ 78 (205)
T TIGR00197 42 FPLAGHVIIFCGPGNNGGDGFVVARHLKGFGV-EVFLL 78 (205)
T ss_pred cCCCCeEEEEECCCCCccHHHHHHHHHHhCCC-EEEEE
Confidence 455678999998765 6778899998 887 46654
No 85
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=71.75 E-value=6.3 Score=31.54 Aligned_cols=29 Identities=24% Similarity=0.508 Sum_probs=23.1
Q ss_pred CeEEEEcCCch---HHHHHHHHHH-cCCCCeeEc
Q 030104 138 DEIIVGCQSGK---RSMMAATDLL-NGFAGITDI 167 (183)
Q Consensus 138 ~~ivv~c~~g~---~s~~a~~~L~-~G~~~v~~l 167 (183)
++|+|+|..|+ +...+|++|. .|| +|.++
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~-~V~v~ 93 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHFGY-EVTVC 93 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHCCC-eEEEE
Confidence 68999998665 7778999999 999 56544
No 86
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=69.02 E-value=18 Score=28.20 Aligned_cols=28 Identities=32% Similarity=0.635 Sum_probs=22.8
Q ss_pred CCeEEEEcCCch---HHHHHHHHHH-cCCCCee
Q 030104 137 HDEIIVGCQSGK---RSMMAATDLL-NGFAGIT 165 (183)
Q Consensus 137 ~~~ivv~c~~g~---~s~~a~~~L~-~G~~~v~ 165 (183)
..+|+|+|..|+ ....+|++|. .|++ |.
T Consensus 49 ~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~-V~ 80 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGLVAARHLKAAGYA-VT 80 (203)
T ss_pred CCEEEEEECCCCccHHHHHHHHHHHhCCCc-eE
Confidence 568999998766 6778999999 9984 44
No 87
>PRK10565 putative carbohydrate kinase; Provisional
Probab=68.96 E-value=13 Score=33.01 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=24.7
Q ss_pred CCCCCeEEEEcCCch---HHHHHHHHHH-cCCCCeeEc
Q 030104 134 FRKHDEIIVGCQSGK---RSMMAATDLL-NGFAGITDI 167 (183)
Q Consensus 134 l~~~~~ivv~c~~g~---~s~~a~~~L~-~G~~~v~~l 167 (183)
++...+|+|+|..|+ +...++++|. .|| +|.++
T Consensus 57 ~~~~~~v~vl~G~GNNGGDG~v~AR~L~~~G~-~V~v~ 93 (508)
T PRK10565 57 YPDARHWLVLCGHGNNGGDGYVVARLAQAAGI-DVTLL 93 (508)
T ss_pred cCCCCeEEEEEcCCCchHHHHHHHHHHHHCCC-ceEEE
Confidence 444568999998765 6778999999 999 45533
No 88
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=68.39 E-value=13 Score=32.63 Aligned_cols=29 Identities=21% Similarity=0.390 Sum_probs=22.9
Q ss_pred CeEEEEcCCch---HHHHHHHHHH-cCCCCeeEc
Q 030104 138 DEIIVGCQSGK---RSMMAATDLL-NGFAGITDI 167 (183)
Q Consensus 138 ~~ivv~c~~g~---~s~~a~~~L~-~G~~~v~~l 167 (183)
++|+|+|..|+ .+..+|++|. .||+ |.++
T Consensus 60 ~~VlVlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 92 (462)
T PLN03049 60 RRVLALCGPGNNGGDGLVAARHLHHFGYK-PSIC 92 (462)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCc-eEEE
Confidence 68999998766 6668999999 9995 5433
No 89
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=66.58 E-value=15 Score=33.03 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=23.0
Q ss_pred CeEEEEcCCch---HHHHHHHHHH-cCCCCeeEc
Q 030104 138 DEIIVGCQSGK---RSMMAATDLL-NGFAGITDI 167 (183)
Q Consensus 138 ~~ivv~c~~g~---~s~~a~~~L~-~G~~~v~~l 167 (183)
++|+|+|..|+ .+..+|++|. .||+ |.++
T Consensus 136 ~~VlVlcGpGNNGGDGLVaAR~L~~~G~~-V~V~ 168 (544)
T PLN02918 136 SRVLAICGPGNNGGDGLVAARHLHHFGYK-PFVC 168 (544)
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCc-eEEE
Confidence 68999998776 6668999999 9994 5543
No 90
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=65.58 E-value=11 Score=26.55 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=23.8
Q ss_pred CeEEEEcCCch-HHHHHHHHHH-cCCCCeeEccccHH
Q 030104 138 DEIIVGCQSGK-RSMMAATDLL-NGFAGITDIAGGFA 172 (183)
Q Consensus 138 ~~ivv~c~~g~-~s~~a~~~L~-~G~~~v~~l~GG~~ 172 (183)
++|+++|.+.. ||..|..+++ ++-+++.+...|+.
T Consensus 1 ~~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~ 37 (126)
T TIGR02689 1 KKVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLE 37 (126)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCC
Confidence 36888887654 8887777777 65456666666653
No 91
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=63.26 E-value=15 Score=27.45 Aligned_cols=40 Identities=20% Similarity=0.385 Sum_probs=24.0
Q ss_pred CHHHHHHHHhc-CC-CCCeEEEEcCCch-HHHHHHHHHH--cCCC
Q 030104 123 NLKFVEEVSTR-FR-KHDEIIVGCQSGK-RSMMAATDLL--NGFA 162 (183)
Q Consensus 123 ~~~~~~~~~~~-l~-~~~~ivv~c~~g~-~s~~a~~~L~--~G~~ 162 (183)
..+.+.+.+.. ++ ...+|+|.|..|. |...+...|+ .|+.
T Consensus 75 ~~~~v~~aL~~ild~~n~PvLiHC~~G~~rTG~vvg~lRk~Q~W~ 119 (164)
T PF03162_consen 75 SEEQVAEALEIILDPRNYPVLIHCNHGKDRTGLVVGCLRKLQGWS 119 (164)
T ss_dssp -HHHHHHHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHHHHTTB-
T ss_pred CHHHHHHHHHHHhCCCCCCEEEEeCCCCcchhhHHHHHHHHcCCC
Confidence 44566666554 33 4579999999886 6666666666 7775
No 92
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=59.55 E-value=23 Score=26.25 Aligned_cols=47 Identities=28% Similarity=0.294 Sum_probs=30.8
Q ss_pred HHHHhcCCCCCeEEEEcCCch--HHHHHHHHHH----cCCCCeeEccccHHHh
Q 030104 128 EEVSTRFRKHDEIIVGCQSGK--RSMMAATDLL----NGFAGITDIAGGFAAW 174 (183)
Q Consensus 128 ~~~~~~l~~~~~ivv~c~~g~--~s~~a~~~L~----~G~~~v~~l~GG~~~W 174 (183)
+.+...++++..+|+.+..|. .|...+..+. .|..++..+-||-.++
T Consensus 58 ~~il~~i~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~ 110 (155)
T PF02590_consen 58 ERILKKIPPNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGADGL 110 (155)
T ss_dssp HHHHCTSHTTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB-
T ss_pred HHHHhhccCCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCCCC
Confidence 344555778888999988886 5777777765 6877899899975443
No 93
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=58.53 E-value=34 Score=31.72 Aligned_cols=87 Identities=18% Similarity=0.213 Sum_probs=55.7
Q ss_pred CHHHHHHHHhC----C-CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHH
Q 030104 76 PVRVAHELLQA----G-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150 (183)
Q Consensus 76 ~~~~~~~~~~~----~-~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s 150 (183)
+.+++.++++. + -.||.|++.+|.+..---|+.-|-.+-..-..+..+.+...++...+++ .+++++.||..+
T Consensus 145 ~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~--~~~~VsESGI~~ 222 (695)
T PRK13802 145 DDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAADLPD--DVIKVAESGVFG 222 (695)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhhCCC--CcEEEEcCCCCC
Confidence 44455555532 3 6789999999987433334433332211112334455666777777764 578899999998
Q ss_pred HHHHHHHH-cCCCCe
Q 030104 151 MMAATDLL-NGFAGI 164 (183)
Q Consensus 151 ~~a~~~L~-~G~~~v 164 (183)
..-+..+. .|++-|
T Consensus 223 ~~d~~~l~~~G~dav 237 (695)
T PRK13802 223 AVEVEDYARAGADAV 237 (695)
T ss_pred HHHHHHHHHCCCCEE
Confidence 88888898 999754
No 94
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=56.47 E-value=17 Score=24.47 Aligned_cols=36 Identities=19% Similarity=0.439 Sum_probs=23.7
Q ss_pred CCeEEEEcCCchHHHHHHHHH----H-cCCCCeeEccccHHH
Q 030104 137 HDEIIVGCQSGKRSMMAATDL----L-NGFAGITDIAGGFAA 173 (183)
Q Consensus 137 ~~~ivv~c~~g~~s~~a~~~L----~-~G~~~v~~l~GG~~~ 173 (183)
.++|++.|.+|..+..++..+ . .|++ +.+-..++..
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~-~~v~a~~~~~ 43 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVP-VKIAAGSYGA 43 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCc-EEEEEecHHH
Confidence 468999999999766555544 4 6773 4444455444
No 95
>PRK13530 arsenate reductase; Provisional
Probab=55.70 E-value=20 Score=25.59 Aligned_cols=36 Identities=19% Similarity=0.040 Sum_probs=25.0
Q ss_pred CCeEEEEcCCch-HHHHHHHHHH-cCCCCeeEccccHH
Q 030104 137 HDEIIVGCQSGK-RSMMAATDLL-NGFAGITDIAGGFA 172 (183)
Q Consensus 137 ~~~ivv~c~~g~-~s~~a~~~L~-~G~~~v~~l~GG~~ 172 (183)
.++|+++|.+.. ||..|..+++ .+-+++.+...|+.
T Consensus 3 ~~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~~ 40 (133)
T PRK13530 3 KKTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGIE 40 (133)
T ss_pred CCEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 357999997655 8887777777 43346766777763
No 96
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=55.16 E-value=29 Score=25.81 Aligned_cols=48 Identities=23% Similarity=0.275 Sum_probs=34.2
Q ss_pred HHHHhcCCCCCeEEEEcCCch--HHHHHHHHHH----cCCCCeeEccccHHHhh
Q 030104 128 EEVSTRFRKHDEIIVGCQSGK--RSMMAATDLL----NGFAGITDIAGGFAAWR 175 (183)
Q Consensus 128 ~~~~~~l~~~~~ivv~c~~g~--~s~~a~~~L~----~G~~~v~~l~GG~~~W~ 175 (183)
+.....++++.-+|+.|..|. .|...+..+. .|..++..+-||-.++.
T Consensus 58 ~~il~~l~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~~ 111 (157)
T PRK00103 58 ERILAALPKGARVIALDERGKQLSSEEFAQELERWRDDGRSDVAFVIGGADGLS 111 (157)
T ss_pred HHHHhhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCccEEEEEcCccccC
Confidence 344555777777888888876 6777777775 45557888999866553
No 97
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=55.09 E-value=57 Score=27.48 Aligned_cols=88 Identities=16% Similarity=0.160 Sum_probs=52.6
Q ss_pred CHHHHHHHHhC----C-CEEEEcCChhhHhcc-CCCCceecCcccccCCCCCCCHHHHHHHHh-----cCCCCCeEEEEc
Q 030104 76 PVRVAHELLQA----G-HRYLDVRTPEEFSAG-HATGAINVPYMYRVGSGMTKNLKFVEEVST-----RFRKHDEIIVGC 144 (183)
Q Consensus 76 ~~~~~~~~~~~----~-~~lIDvR~~~e~~~g-hIpgAvnip~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~ivv~c 144 (183)
+.+++.++++- + -+||.|++.+|.+.. .+.|+--|-.+-..-..+..+.+....+.. .+++ +.+++++
T Consensus 215 ~~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~~-~~~~~Vs 293 (338)
T PLN02460 215 PDLDIKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRSLETFEVDISNTKKLLEGERGEQIRE-KGIIVVG 293 (338)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHHHhhhccccccCC-CCeEEEE
Confidence 44455554432 3 689999999998643 223443333221111223334444555554 3432 4588999
Q ss_pred CCchHHHHHHHHHH-cCCCCe
Q 030104 145 QSGKRSMMAATDLL-NGFAGI 164 (183)
Q Consensus 145 ~~g~~s~~a~~~L~-~G~~~v 164 (183)
.||.....-...+. .|++-|
T Consensus 294 ESGI~t~~Dv~~l~~~GadAv 314 (338)
T PLN02460 294 ESGLFTPDDVAYVQNAGVKAV 314 (338)
T ss_pred CCCCCCHHHHHHHHHCCCCEE
Confidence 99999888888999 999754
No 98
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=53.59 E-value=16 Score=26.51 Aligned_cols=36 Identities=19% Similarity=0.167 Sum_probs=27.0
Q ss_pred CeEEEEcCCch-HHHHHHHHHH-cCCCCeeEccccHHH
Q 030104 138 DEIIVGCQSGK-RSMMAATDLL-NGFAGITDIAGGFAA 173 (183)
Q Consensus 138 ~~ivv~c~~g~-~s~~a~~~L~-~G~~~v~~l~GG~~~ 173 (183)
.+|+|+|.+.. ||..|-.+++ ..-+++.+...|..+
T Consensus 3 ~kVLFVC~gN~cRSpmAE~l~~~~~~~~~~v~SAGt~~ 40 (139)
T COG0394 3 MKVLFVCTGNICRSPMAEALLRHLAPDNVEVDSAGTGG 40 (139)
T ss_pred ceEEEEcCCCcccCHHHHHHHHHhccCCeEEECCccCC
Confidence 57999997655 8988888888 433688888888654
No 99
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=53.30 E-value=8.2 Score=31.09 Aligned_cols=89 Identities=24% Similarity=0.253 Sum_probs=52.5
Q ss_pred ccCHHHHHHHHh----CC-CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCch
Q 030104 74 SVPVRVAHELLQ----AG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK 148 (183)
Q Consensus 74 ~i~~~~~~~~~~----~~-~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~ 148 (183)
.++.+++.++++ =| -.+|.|++.+|.+..---|+.-|-.+-..-..+..+.+...++...++++ ++++..+|.
T Consensus 141 ~L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~tf~vd~~~~~~l~~~ip~~--~~~iseSGI 218 (254)
T PF00218_consen 141 ILSDDQLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLKTFEVDLNRTEELAPLIPKD--VIVISESGI 218 (254)
T ss_dssp GSGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTTTCCBHTHHHHHHHCHSHTT--SEEEEESS-
T ss_pred hCCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccccCcccChHHHHHHHhhCccc--eeEEeecCC
Confidence 345555555553 24 67999999998774322233222221111122333445556666667654 788889999
Q ss_pred HHHHHHHHHH-cCCCCe
Q 030104 149 RSMMAATDLL-NGFAGI 164 (183)
Q Consensus 149 ~s~~a~~~L~-~G~~~v 164 (183)
.+..-+..|. .|++-+
T Consensus 219 ~~~~d~~~l~~~G~dav 235 (254)
T PF00218_consen 219 KTPEDARRLARAGADAV 235 (254)
T ss_dssp SSHHHHHHHCTTT-SEE
T ss_pred CCHHHHHHHHHCCCCEE
Confidence 9888888999 999754
No 100
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=53.23 E-value=18 Score=26.31 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=24.9
Q ss_pred CeEEEEcCCch-HHHHHHHHHH-cCCCCeeEccccHHHh
Q 030104 138 DEIIVGCQSGK-RSMMAATDLL-NGFAGITDIAGGFAAW 174 (183)
Q Consensus 138 ~~ivv~c~~g~-~s~~a~~~L~-~G~~~v~~l~GG~~~W 174 (183)
++|+|+|.+.. ||..|...++ ..- ++.+...|+.+|
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~~-~~~v~SaG~~~~ 40 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRLP-GVKVKSAGVHGL 40 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEcccccCC
Confidence 47899997655 8888887887 542 455666676655
No 101
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=52.13 E-value=32 Score=28.50 Aligned_cols=47 Identities=17% Similarity=0.116 Sum_probs=35.9
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHH-cCCC-CeeEccccH
Q 030104 125 KFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFA-GITDIAGGF 171 (183)
Q Consensus 125 ~~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~-~v~~l~GG~ 171 (183)
+.+..+...+.++.+++|+|++-..+..++..|. .+.+ ++..+.|++
T Consensus 210 ~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~ 258 (358)
T TIGR01587 210 SSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRF 258 (358)
T ss_pred HHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCC
Confidence 3444445445567899999999888989999998 7764 688888885
No 102
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=51.75 E-value=32 Score=30.92 Aligned_cols=44 Identities=20% Similarity=0.224 Sum_probs=34.0
Q ss_pred HHHHHhcCC--CCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccH
Q 030104 127 VEEVSTRFR--KHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGF 171 (183)
Q Consensus 127 ~~~~~~~l~--~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~ 171 (183)
...+...+. -+.+|||+.+.-..+..+|..|. .|| +++.|.||-
T Consensus 505 ~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~-~~~tlHg~k 551 (673)
T KOG0333|consen 505 RKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGY-KVTTLHGGK 551 (673)
T ss_pred HHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccc-eEEEeeCCc
Confidence 444444432 35789999998888888999999 999 799999983
No 103
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=51.69 E-value=65 Score=22.11 Aligned_cols=45 Identities=24% Similarity=0.251 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCchHHH-HHHHHHHcCCCCeeEccc
Q 030104 125 KFVEEVSTRFRKHDEIIVGCQSGKRSM-MAATDLLNGFAGITDIAG 169 (183)
Q Consensus 125 ~~~~~~~~~l~~~~~ivv~c~~g~~s~-~a~~~L~~G~~~v~~l~G 169 (183)
+.+.+....++.+..|+|+|+-+.-+. ..+..+...+++++++.|
T Consensus 45 ~~l~~~i~~~~~~~~vlil~Dl~ggsp~n~a~~~~~~~~~~~vi~G 90 (116)
T PF03610_consen 45 EKLEEAIEELDEGDGVLILTDLGGGSPFNEAARLLLDKPNIRVISG 90 (116)
T ss_dssp HHHHHHHHHCCTTSEEEEEESSTTSHHHHHHHHHHCTSTTEEEEES
T ss_pred HHHHHHHHhccCCCcEEEEeeCCCCccchHHHHHhccCCCEEEEec
Confidence 445555566777889999998444332 222222244445665554
No 104
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=51.65 E-value=20 Score=30.30 Aligned_cols=38 Identities=13% Similarity=0.078 Sum_probs=28.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHHHh
Q 030104 136 KHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAW 174 (183)
Q Consensus 136 ~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W 174 (183)
.+++|+|+ ..|..+..++..|. .|+.++.++|+..-.+
T Consensus 134 ~~~~Vlvv-G~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~ 172 (376)
T PRK08762 134 LEARVLLI-GAGGLGSPAALYLAAAGVGTLGIVDHDVVDR 172 (376)
T ss_pred hcCcEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCCEecc
Confidence 45677777 45556667888888 9999999999875433
No 105
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=50.63 E-value=41 Score=27.15 Aligned_cols=46 Identities=17% Similarity=0.266 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHH-cCCCCee
Q 030104 120 MTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGIT 165 (183)
Q Consensus 120 ~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~ 165 (183)
++++.+.++.....+.++..+++||..-....+....|+ .||.++.
T Consensus 171 mp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie 217 (256)
T COG2519 171 LPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIE 217 (256)
T ss_pred CCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchh
Confidence 455667788888888889999999999999999999999 9997654
No 106
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=49.01 E-value=24 Score=24.31 Aligned_cols=35 Identities=23% Similarity=0.190 Sum_probs=22.8
Q ss_pred CeEEEEcCCchHHHHHHHHH----H-cCCCCeeEccccHHH
Q 030104 138 DEIIVGCQSGKRSMMAATDL----L-NGFAGITDIAGGFAA 173 (183)
Q Consensus 138 ~~ivv~c~~g~~s~~a~~~L----~-~G~~~v~~l~GG~~~ 173 (183)
++|+++|.+|..+..++..+ . .|++ +.+-..+...
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~-~~i~a~~~~e 41 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKD-IEVDAITATE 41 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCc-eEEEEecHHH
Confidence 46999999999776665555 4 6773 4444444443
No 107
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=48.94 E-value=20 Score=24.45 Aligned_cols=35 Identities=26% Similarity=0.477 Sum_probs=23.6
Q ss_pred eEEEEcCCchHHHHHHHHH----H-cCCCCeeEccccHHHh
Q 030104 139 EIIVGCQSGKRSMMAATDL----L-NGFAGITDIAGGFAAW 174 (183)
Q Consensus 139 ~ivv~c~~g~~s~~a~~~L----~-~G~~~v~~l~GG~~~W 174 (183)
+|++.|.+|..|..++..+ . .|+ ++.+-..+....
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi-~~~i~a~~~~e~ 41 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGV-PLEAAAGAYGSH 41 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-cEEEEEeeHHHH
Confidence 5899999998777666655 3 677 355555555443
No 108
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=47.68 E-value=65 Score=23.97 Aligned_cols=47 Identities=23% Similarity=0.183 Sum_probs=32.7
Q ss_pred HHHHHhcCCCCCeEEEEcCCch--HHHHHHHHHH----cCCCCeeEccccHHHh
Q 030104 127 VEEVSTRFRKHDEIIVGCQSGK--RSMMAATDLL----NGFAGITDIAGGFAAW 174 (183)
Q Consensus 127 ~~~~~~~l~~~~~ivv~c~~g~--~s~~a~~~L~----~G~~~v~~l~GG~~~W 174 (183)
-+...+.++++..+|+.+-.|. .|...|..+. .| .++..+-||-.+.
T Consensus 57 ~~~il~~i~~~~~vi~Ld~~Gk~~sSe~fA~~l~~~~~~G-~~i~f~IGG~~Gl 109 (155)
T COG1576 57 GEAILAAIPKGSYVVLLDIRGKALSSEEFADFLERLRDDG-RDISFLIGGADGL 109 (155)
T ss_pred HHHHHHhcCCCCeEEEEecCCCcCChHHHHHHHHHHHhcC-CeEEEEEeCcccC
Confidence 3445556778877887777665 5667777664 67 7888888886543
No 109
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=47.50 E-value=71 Score=25.80 Aligned_cols=87 Identities=20% Similarity=0.214 Sum_probs=55.4
Q ss_pred cCHHHHHHHHh----CC-CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchH
Q 030104 75 VPVRVAHELLQ----AG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR 149 (183)
Q Consensus 75 i~~~~~~~~~~----~~-~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~ 149 (183)
++.++++++.+ -| -++|.|++.+|.+...--|+.-|-.+-..-..+..+.+....+...++++ ++++..||..
T Consensus 140 L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL~tf~vdl~~t~~la~~~p~~--~~~IsESGI~ 217 (254)
T COG0134 140 LDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDLTTLEVDLETTEKLAPLIPKD--VILISESGIS 217 (254)
T ss_pred cCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCcchheecHHHHHHHHhhCCCC--cEEEecCCCC
Confidence 34555555553 24 68999999999875544555444332111123334455566666667665 6888899998
Q ss_pred HHHHHHHHH-cCCCC
Q 030104 150 SMMAATDLL-NGFAG 163 (183)
Q Consensus 150 s~~a~~~L~-~G~~~ 163 (183)
+..=+..+. .|.+-
T Consensus 218 ~~~dv~~l~~~ga~a 232 (254)
T COG0134 218 TPEDVRRLAKAGADA 232 (254)
T ss_pred CHHHHHHHHHcCCCE
Confidence 888888888 99853
No 110
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=47.38 E-value=74 Score=21.38 Aligned_cols=35 Identities=23% Similarity=0.241 Sum_probs=27.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccH
Q 030104 136 KHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGF 171 (183)
Q Consensus 136 ~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~ 171 (183)
.+.+++|||..-.....++..|. .+. .+..+.|++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 62 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPGI-KVAALHGDG 62 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcCC-cEEEEECCC
Confidence 56789999999888888888888 776 577777774
No 111
>PTZ00110 helicase; Provisional
Probab=46.96 E-value=41 Score=30.03 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=33.1
Q ss_pred HHHHHhcC-CCCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccH
Q 030104 127 VEEVSTRF-RKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGF 171 (183)
Q Consensus 127 ~~~~~~~l-~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~ 171 (183)
+..++..+ ....++||||++-..+..++..|. .|+ .+..+.|+.
T Consensus 366 L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~-~~~~ihg~~ 411 (545)
T PTZ00110 366 LKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGW-PALCIHGDK 411 (545)
T ss_pred HHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCC-cEEEEECCC
Confidence 33444443 256799999999989999999999 998 466677765
No 112
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=46.95 E-value=79 Score=29.20 Aligned_cols=35 Identities=17% Similarity=0.115 Sum_probs=29.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccH
Q 030104 136 KHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGF 171 (183)
Q Consensus 136 ~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~ 171 (183)
...+++|+|++-..+...+..|. .|+ .+..|.|..
T Consensus 472 ~~~pvLIft~t~~~se~L~~~L~~~gi-~~~~Lhg~~ 507 (656)
T PRK12898 472 QGRPVLVGTRSVAASERLSALLREAGL-PHQVLNAKQ 507 (656)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCC-CEEEeeCCc
Confidence 35789999999999999999999 999 566777764
No 113
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=46.18 E-value=80 Score=25.35 Aligned_cols=86 Identities=19% Similarity=0.140 Sum_probs=52.0
Q ss_pred CHHHHHHHHhC----C-CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHH
Q 030104 76 PVRVAHELLQA----G-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150 (183)
Q Consensus 76 ~~~~~~~~~~~----~-~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s 150 (183)
+.+++.++++. | -.+|.|++.+|.+...--|+--|-.+-..-..+..+.+....+...+++ .+++++.+|..+
T Consensus 136 ~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~~ip~--~~~~IsESGI~t 213 (247)
T PRK13957 136 TPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAAFLPP--NIVKVGESGIES 213 (247)
T ss_pred CHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCC--CcEEEEcCCCCC
Confidence 44555555432 3 6789999999987543334433333211112334455666777777764 467888999987
Q ss_pred HHHHHHHH-cCCCCe
Q 030104 151 MMAATDLL-NGFAGI 164 (183)
Q Consensus 151 ~~a~~~L~-~G~~~v 164 (183)
..-+..+. . ++-+
T Consensus 214 ~~d~~~l~~~-~dav 227 (247)
T PRK13957 214 RSDLDKFRKL-VDAA 227 (247)
T ss_pred HHHHHHHHHh-CCEE
Confidence 76666677 6 6543
No 114
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=45.65 E-value=39 Score=29.43 Aligned_cols=42 Identities=24% Similarity=0.201 Sum_probs=28.9
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHHH--c----CCCCeeEccccHHHhh
Q 030104 134 FRKHDEIIVGCQSGKRSMMAATDLL--N----GFAGITDIAGGFAAWR 175 (183)
Q Consensus 134 l~~~~~ivv~c~~g~~s~~a~~~L~--~----G~~~v~~l~GG~~~W~ 175 (183)
.+.+...+++|++|..+..+|-.|. . |-..+-.+.|++.+|.
T Consensus 130 ~p~~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t 177 (442)
T TIGR03372 130 TPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKS 177 (442)
T ss_pred CCCCcCEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCC
Confidence 3444357888999998887666665 3 5445667788887764
No 115
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=45.55 E-value=78 Score=23.24 Aligned_cols=38 Identities=18% Similarity=0.178 Sum_probs=27.1
Q ss_pred CCCCCeEEEEcCC-ch---HHHHHHHHHH-cCCCCeeEccccH
Q 030104 134 FRKHDEIIVGCQS-GK---RSMMAATDLL-NGFAGITDIAGGF 171 (183)
Q Consensus 134 l~~~~~ivv~c~~-g~---~s~~a~~~L~-~G~~~v~~l~GG~ 171 (183)
+..+..+|++|.. |. ....+...|+ .|.+++.++.||.
T Consensus 60 ~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGv 102 (143)
T COG2185 60 VEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGGV 102 (143)
T ss_pred HhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecCc
Confidence 3467778888863 22 3557778888 8988888788874
No 116
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=45.49 E-value=18 Score=31.73 Aligned_cols=42 Identities=24% Similarity=0.363 Sum_probs=33.0
Q ss_pred eEEEEcCCchHHHHHHHHHH-cCCCCeeEccccH---------HHhhhCCCCC
Q 030104 139 EIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGF---------AAWRQNGLPT 181 (183)
Q Consensus 139 ~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~---------~~W~~~g~pv 181 (183)
-=||||++-....+.+-.|. .|+ +...|..|+ .+|++...||
T Consensus 257 CGIVYCRTR~~cEq~AI~l~~~Gi-~A~AYHAGLK~~ERTeVQe~WM~~~~Pv 308 (641)
T KOG0352|consen 257 CGIVYCRTRNECEQVAIMLEIAGI-PAMAYHAGLKKKERTEVQEKWMNNEIPV 308 (641)
T ss_pred ceEEEeccHHHHHHHHHHhhhcCc-chHHHhcccccchhHHHHHHHhcCCCCE
Confidence 36999999888889999999 998 455555555 5898887776
No 117
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=44.98 E-value=29 Score=22.43 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=16.1
Q ss_pred eEEEEcCCchHHHHHH-HHH----H-cCCC
Q 030104 139 EIIVGCQSGKRSMMAA-TDL----L-NGFA 162 (183)
Q Consensus 139 ~ivv~c~~g~~s~~a~-~~L----~-~G~~ 162 (183)
+|++.|.+|..+...+ ..+ . .|++
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~ 30 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIE 30 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTEC
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCc
Confidence 5899999998554333 444 4 6764
No 118
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=44.45 E-value=47 Score=29.49 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=29.7
Q ss_pred CeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHH
Q 030104 138 DEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFA 172 (183)
Q Consensus 138 ~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~ 172 (183)
..+||+|++......+++.|. .|| ++..|.|++.
T Consensus 274 ~~~IVF~~tk~~~~~l~~~l~~~g~-~~~~lhG~l~ 308 (513)
T COG0513 274 GRVIVFVRTKRLVEELAESLRKRGF-KVAALHGDLP 308 (513)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHCCC-eEEEecCCCC
Confidence 369999999999999999999 998 6888998753
No 119
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=43.54 E-value=54 Score=25.19 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=22.3
Q ss_pred cccCHHHHHHHHhCCCEEEEcCChhh
Q 030104 73 TSVPVRVAHELLQAGHRYLDVRTPEE 98 (183)
Q Consensus 73 ~~i~~~~~~~~~~~~~~lIDvR~~~e 98 (183)
..|+.++..+....+.-||||.++.|
T Consensus 6 SPin~eEA~eAieGGAdIiDVKNP~E 31 (235)
T COG1891 6 SPINREEAIEAIEGGADIIDVKNPAE 31 (235)
T ss_pred ccCCHHHHHHHhhCCCceEeccCccc
Confidence 45677888888888999999999987
No 120
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=43.38 E-value=29 Score=23.27 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=22.0
Q ss_pred eEEEEcCCchHHHHHHHHH----H-cCCCCeeEccccHHH
Q 030104 139 EIIVGCQSGKRSMMAATDL----L-NGFAGITDIAGGFAA 173 (183)
Q Consensus 139 ~ivv~c~~g~~s~~a~~~L----~-~G~~~v~~l~GG~~~ 173 (183)
+|++.|.+|..+..++..+ . .|++ +.+-..++..
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~-~~v~~~~~~~ 39 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGID-AEIEAVPESE 39 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCc-eEEEEecHHH
Confidence 4899999999776555555 3 5763 4444444444
No 121
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=43.35 E-value=34 Score=29.95 Aligned_cols=34 Identities=18% Similarity=0.107 Sum_probs=28.8
Q ss_pred CCCeEEEEcCC---chHHHHHHHHHH-cCCCCeeEccc
Q 030104 136 KHDEIIVGCQS---GKRSMMAATDLL-NGFAGITDIAG 169 (183)
Q Consensus 136 ~~~~ivv~c~~---g~~s~~a~~~L~-~G~~~v~~l~G 169 (183)
++++||++++| |..|.++.++|+ .|-+.|++-.+
T Consensus 347 ~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvria 384 (470)
T COG0034 347 KGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIA 384 (470)
T ss_pred CCCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEec
Confidence 57999999996 778999999999 99998876443
No 122
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=42.28 E-value=33 Score=24.35 Aligned_cols=32 Identities=22% Similarity=0.032 Sum_probs=15.0
Q ss_pred EEEEcCCch-HHHHHHHHHH-cCCCCeeEccccH
Q 030104 140 IIVGCQSGK-RSMMAATDLL-NGFAGITDIAGGF 171 (183)
Q Consensus 140 ivv~c~~g~-~s~~a~~~L~-~G~~~v~~l~GG~ 171 (183)
|+++|.+.. ||..+..+++ +.-+++.+...|+
T Consensus 1 iLFvC~~N~~RS~mAea~~~~~~~~~~~v~SaG~ 34 (129)
T TIGR02691 1 IYFLCTGNSCRSQMAEGWGKKYLGDEWEVYSAGI 34 (129)
T ss_pred CEEEcCCchHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 355565433 5555555555 3213444455554
No 123
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=42.16 E-value=88 Score=20.86 Aligned_cols=36 Identities=25% Similarity=0.243 Sum_probs=21.7
Q ss_pred CeEEEEcCCchH-HHHHHH----HHH-cCCCCeeEccccHHHh
Q 030104 138 DEIIVGCQSGKR-SMMAAT----DLL-NGFAGITDIAGGFAAW 174 (183)
Q Consensus 138 ~~ivv~c~~g~~-s~~a~~----~L~-~G~~~v~~l~GG~~~W 174 (183)
.+|++.|.+|.. |..++. .+. .|++ +.+....+...
T Consensus 3 ~kILvvCgsG~~TS~m~~~ki~~~l~~~gi~-~~v~~~~~~e~ 44 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQSHNIP-VELIQCRVNEI 44 (94)
T ss_pred CeEEEECCCchhHHHHHHHHHHHHHHHCCCe-EEEEEecHHHH
Confidence 369999999984 444344 445 6773 54444444443
No 124
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=41.27 E-value=37 Score=23.36 Aligned_cols=20 Identities=15% Similarity=0.421 Sum_probs=16.0
Q ss_pred CeEEEEcCCchHHHHHHHHH
Q 030104 138 DEIIVGCQSGKRSMMAATDL 157 (183)
Q Consensus 138 ~~ivv~c~~g~~s~~a~~~L 157 (183)
++|+++|..|..+...+..+
T Consensus 4 kkIllvC~~G~sTSll~~km 23 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKM 23 (106)
T ss_pred CEEEEECCCCccHHHHHHHH
Confidence 57999999999877766444
No 125
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=40.91 E-value=28 Score=27.26 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=23.4
Q ss_pred EEEEcCCchHHHHHHHHHH-cCCCCeeEcc-ccHHHhhhC
Q 030104 140 IIVGCQSGKRSMMAATDLL-NGFAGITDIA-GGFAAWRQN 177 (183)
Q Consensus 140 ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~-GG~~~W~~~ 177 (183)
|+-+-..+.-...|-..|. +||.||.+.. .|..+|.+.
T Consensus 97 V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 97 VVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred EEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCC
Confidence 3333333333444555688 9999887554 478888764
No 126
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=40.84 E-value=39 Score=29.10 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=37.2
Q ss_pred ccCCCCCCCHHHHHHHHhc--C---C---CCCeEEEEcCC---chHHHHHHHHHH-cCCCCeeE
Q 030104 115 RVGSGMTKNLKFVEEVSTR--F---R---KHDEIIVGCQS---GKRSMMAATDLL-NGFAGITD 166 (183)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~--l---~---~~~~ivv~c~~---g~~s~~a~~~L~-~G~~~v~~ 166 (183)
+.+..+..+.+.+++..-. + . .+++||+++++ |..+..+.++|+ .|-++|++
T Consensus 326 YvGRTFI~P~q~iR~~~V~~Kl~~l~~~~~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh~ 389 (474)
T KOG0572|consen 326 YVGRTFIEPNQRIRQLGVKKKLGPLRQNFEGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHI 389 (474)
T ss_pred cccceecCccHHHHHhhhhhhcccchhhcCCceEEEEecceeccCchHHHHHHHHHcCCcEEEE
Confidence 3345556666666654322 2 1 46899999996 778889999999 99998864
No 127
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.59 E-value=55 Score=28.54 Aligned_cols=36 Identities=25% Similarity=0.311 Sum_probs=29.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHH
Q 030104 136 KHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFA 172 (183)
Q Consensus 136 ~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~ 172 (183)
+++..||||++-..+..++..|. .|+ ++..+.||+.
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~-~~~~~H~~l~ 261 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGI-AAGAYHAGLE 261 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCC-CeeEeeCCCC
Confidence 45677999999999999999999 998 5777778753
No 128
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=40.17 E-value=48 Score=25.07 Aligned_cols=32 Identities=22% Similarity=0.148 Sum_probs=26.5
Q ss_pred CCCeEEEEcC---CchHHHHHHHHHH-cCCCCeeEc
Q 030104 136 KHDEIIVGCQ---SGKRSMMAATDLL-NGFAGITDI 167 (183)
Q Consensus 136 ~~~~ivv~c~---~g~~s~~a~~~L~-~G~~~v~~l 167 (183)
.+++|+++++ +|.....++..|. .|...|+++
T Consensus 151 ~~~~vllvDDV~TTGaTl~~~~~~L~~~Ga~~V~~~ 186 (190)
T TIGR00201 151 QGRNIVLVDDVVTTGATLHEIARLLLELGAASVQVW 186 (190)
T ss_pred CCCEEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEE
Confidence 3578999876 7888889999999 999888764
No 129
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=40.11 E-value=92 Score=21.59 Aligned_cols=44 Identities=16% Similarity=0.153 Sum_probs=24.7
Q ss_pred HHHHHHHhcCCCCCeEEEEcCC--chHHHHHHHHHHcCCCCeeEccc
Q 030104 125 KFVEEVSTRFRKHDEIIVGCQS--GKRSMMAATDLLNGFAGITDIAG 169 (183)
Q Consensus 125 ~~~~~~~~~l~~~~~ivv~c~~--g~~s~~a~~~L~~G~~~v~~l~G 169 (183)
+.++...+.++.+..|+|.++- |.-...+...+. .+++++++.|
T Consensus 46 ~~l~~~i~~~~~~~~vivltDl~GGSp~n~a~~~~~-~~~~~~vIsG 91 (116)
T TIGR00824 46 EKYNAALADLDTEEEVLFLVDIFGGSPYNAAARIIV-DKPHMDVIAG 91 (116)
T ss_pred HHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHh-hcCCEEEEEe
Confidence 3444555666667788888873 444433433332 3356776665
No 130
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=39.88 E-value=52 Score=23.34 Aligned_cols=35 Identities=23% Similarity=0.137 Sum_probs=25.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccH
Q 030104 136 KHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGF 171 (183)
Q Consensus 136 ~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~ 171 (183)
++++++|+.. |..+..++..|. .|+++++++.--.
T Consensus 11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 4567777765 556666788888 9998888776543
No 131
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=38.63 E-value=63 Score=27.76 Aligned_cols=44 Identities=16% Similarity=0.071 Sum_probs=30.6
Q ss_pred hcCCCCCeEEEEcCCchHHHHHHHHHH---cCCCCeeEccccHHHhh
Q 030104 132 TRFRKHDEIIVGCQSGKRSMMAATDLL---NGFAGITDIAGGFAAWR 175 (183)
Q Consensus 132 ~~l~~~~~ivv~c~~g~~s~~a~~~L~---~G~~~v~~l~GG~~~W~ 175 (183)
+..+....-+++|++|..+..++-.+. .|-+++..++|++.+|.
T Consensus 97 ~~~~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 143 (433)
T PRK08117 97 EITPGGLDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRT 143 (433)
T ss_pred HhCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcC
Confidence 334344456888999998887766664 36556778888888774
No 132
>PRK06148 hypothetical protein; Provisional
Probab=38.35 E-value=56 Score=31.66 Aligned_cols=43 Identities=12% Similarity=0.046 Sum_probs=32.1
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHHH---cCCCCeeEccccHHHhhh
Q 030104 134 FRKHDEIIVGCQSGKRSMMAATDLL---NGFAGITDIAGGFAAWRQ 176 (183)
Q Consensus 134 l~~~~~ivv~c~~g~~s~~a~~~L~---~G~~~v~~l~GG~~~W~~ 176 (183)
++.+-..+++|++|..+..+|-.|. -|-++|..++||+.+|..
T Consensus 676 ~p~~~~~v~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~ 721 (1013)
T PRK06148 676 LPDGLTVAFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTT 721 (1013)
T ss_pred CCCCcCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCc
Confidence 4444457899999999887777765 465677788999988853
No 133
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=38.27 E-value=59 Score=29.84 Aligned_cols=46 Identities=13% Similarity=0.209 Sum_probs=34.2
Q ss_pred HHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHH
Q 030104 126 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFA 172 (183)
Q Consensus 126 ~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~ 172 (183)
.+.++...+..+.+++|+|++-.++...+..|. .|+ ++..+.|+..
T Consensus 435 L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi-~~~~~h~~~~ 481 (652)
T PRK05298 435 LLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGI-KVRYLHSDID 481 (652)
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcce-eEEEEECCCC
Confidence 334444445567899999999999999999999 998 5666766543
No 134
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=38.25 E-value=35 Score=22.25 Aligned_cols=14 Identities=29% Similarity=0.665 Sum_probs=11.0
Q ss_pred CeEEEEcCCchHHH
Q 030104 138 DEIIVGCQSGKRSM 151 (183)
Q Consensus 138 ~~ivv~c~~g~~s~ 151 (183)
++|+++|.+|..+.
T Consensus 1 ~kilvvCg~G~gtS 14 (87)
T cd05567 1 KKIVFACDAGMGSS 14 (87)
T ss_pred CEEEEECCCCccHH
Confidence 36999999998544
No 135
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=37.24 E-value=49 Score=28.25 Aligned_cols=35 Identities=17% Similarity=0.175 Sum_probs=29.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccH
Q 030104 136 KHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGF 171 (183)
Q Consensus 136 ~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~ 171 (183)
...+++|||++-..+..++..|. .|+ ++..+.|++
T Consensus 254 ~~~~~lVF~~t~~~~~~l~~~L~~~g~-~v~~lhg~~ 289 (423)
T PRK04837 254 WPDRAIIFANTKHRCEEIWGHLAADGH-RVGLLTGDV 289 (423)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhCCC-cEEEecCCC
Confidence 35689999999888889999999 998 688888875
No 136
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=35.75 E-value=1.9e+02 Score=23.21 Aligned_cols=75 Identities=17% Similarity=0.152 Sum_probs=41.1
Q ss_pred CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHH-cCCCCe
Q 030104 88 HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGI 164 (183)
Q Consensus 88 ~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v 164 (183)
-.++||.+.+|.....=-|+-.|-++......+..+.+...++...++. .+++++.+|..+..-+..+. .|++-|
T Consensus 162 ~~lvevh~~~E~~~A~~~gadiIgin~rdl~~~~~d~~~~~~l~~~~p~--~~~vIaegGI~t~ed~~~~~~~Gad~v 237 (260)
T PRK00278 162 DVLVEVHDEEELERALKLGAPLIGINNRNLKTFEVDLETTERLAPLIPS--DRLVVSESGIFTPEDLKRLAKAGADAV 237 (260)
T ss_pred eEEEEeCCHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHhCCC--CCEEEEEeCCCCHHHHHHHHHcCCCEE
Confidence 6788999887664321113222221100001122334555666665543 35777888887666677777 998654
No 137
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=35.66 E-value=77 Score=27.40 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=29.6
Q ss_pred CCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHH
Q 030104 137 HDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFA 172 (183)
Q Consensus 137 ~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~ 172 (183)
..+++|||++-..+..++..|. .|+ ++..+.|++.
T Consensus 242 ~~~~lVF~~t~~~~~~l~~~L~~~~~-~v~~~hg~~~ 277 (460)
T PRK11776 242 PESCVVFCNTKKECQEVADALNAQGF-SALALHGDLE 277 (460)
T ss_pred CCceEEEECCHHHHHHHHHHHHhCCC-cEEEEeCCCC
Confidence 4579999999999999999999 998 6777888764
No 138
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=35.24 E-value=75 Score=28.43 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=29.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccH
Q 030104 136 KHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGF 171 (183)
Q Consensus 136 ~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~ 171 (183)
++.++||||.+-..+..++..|+ .|| ++..+.|..
T Consensus 340 ~~~KvIIFc~tkr~~~~l~~~l~~~~~-~a~~iHGd~ 375 (519)
T KOG0331|consen 340 SEGKVIIFCETKRTCDELARNLRRKGW-PAVAIHGDK 375 (519)
T ss_pred CCCcEEEEecchhhHHHHHHHHHhcCc-ceeeecccc
Confidence 45689999999999999999999 898 566777764
No 139
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=34.87 E-value=51 Score=20.34 Aligned_cols=20 Identities=45% Similarity=0.551 Sum_probs=14.0
Q ss_pred eEEEEcCCch-HHHHHHHHHH
Q 030104 139 EIIVGCQSGK-RSMMAATDLL 158 (183)
Q Consensus 139 ~ivv~c~~g~-~s~~a~~~L~ 158 (183)
+|+++|.+|. .+..+...|+
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~ 21 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLE 21 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHH
Confidence 4889999995 5555555554
No 140
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=34.57 E-value=62 Score=27.68 Aligned_cols=35 Identities=20% Similarity=0.134 Sum_probs=30.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccH
Q 030104 136 KHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGF 171 (183)
Q Consensus 136 ~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~ 171 (183)
...+++|||++-..+..++..|. .|+ .+..+.|++
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~~~~-~~~~l~g~~ 279 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRKAGI-NCCYLEGEM 279 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCC-CEEEecCCC
Confidence 45789999999999999999999 998 577888876
No 141
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=34.28 E-value=53 Score=29.58 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=30.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccH
Q 030104 136 KHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGF 171 (183)
Q Consensus 136 ~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~ 171 (183)
.+.+++|||++-..+..++..|. .|+ ++..+.|++
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~g~-~v~~lhg~l 291 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERHGY-RVGVLSGDV 291 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHcCC-CEEEEeCCC
Confidence 45789999999989999999999 998 688888874
No 142
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=33.79 E-value=1.3e+02 Score=26.65 Aligned_cols=62 Identities=11% Similarity=0.066 Sum_probs=36.8
Q ss_pred CCEEEEcCCh--hhHhccCCCCceecCcccccCCCCCCCHHHHHHH----HhcCCCCCeEEEEcCCch
Q 030104 87 GHRYLDVRTP--EEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV----STRFRKHDEIIVGCQSGK 148 (183)
Q Consensus 87 ~~~lIDvR~~--~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~----~~~l~~~~~ivv~c~~g~ 148 (183)
+.++||+-.. .....-.||-+..+|-..++..-.....+++... ...|.-.++-|+||..|.
T Consensus 242 GPVLVDlPKDvta~~l~~pip~~~~lPsn~~m~~~~~~~~~~v~~~i~~~a~Li~laKKPVlyvG~G~ 309 (675)
T KOG4166|consen 242 GPVLVDLPKDVTAQLLIPPIPQAMRLPSNAYMSRMPKPPEDFVMSHIEQIARLISLAKKPVLYVGGGC 309 (675)
T ss_pred CCeEeeCcHHHHHHHhcCCchhhhcCCchhhHhhCCCCchhhHHHHHHHHHHHHHhccCceEEeCccc
Confidence 4899999432 1234667888888887544433233333443333 333555677899998876
No 143
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=33.13 E-value=1.8e+02 Score=20.72 Aligned_cols=16 Identities=13% Similarity=-0.141 Sum_probs=9.5
Q ss_pred HHHHHHh-CCCEEEEcC
Q 030104 79 VAHELLQ-AGHRYLDVR 94 (183)
Q Consensus 79 ~~~~~~~-~~~~lIDvR 94 (183)
.+...+. .++.+||..
T Consensus 21 iv~~~l~~~GfeVi~lg 37 (132)
T TIGR00640 21 VIATAYADLGFDVDVGP 37 (132)
T ss_pred HHHHHHHhCCcEEEECC
Confidence 4444444 458888874
No 144
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=32.48 E-value=81 Score=27.37 Aligned_cols=43 Identities=19% Similarity=0.270 Sum_probs=31.6
Q ss_pred HHHHHhcCCCCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccH
Q 030104 127 VEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGF 171 (183)
Q Consensus 127 ~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~ 171 (183)
+-.++.+. .+..+||+|++...+...+-.|+ .|+. .--|.|-+
T Consensus 291 LV~ll~e~-~g~s~iVF~~t~~tt~~la~~L~~lg~~-a~~LhGqm 334 (476)
T KOG0330|consen 291 LVYLLNEL-AGNSVIVFCNTCNTTRFLALLLRNLGFQ-AIPLHGQM 334 (476)
T ss_pred HHHHHHhh-cCCcEEEEEeccchHHHHHHHHHhcCcc-eecccchh
Confidence 33444443 34789999999999999999999 9994 44566644
No 145
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=32.28 E-value=78 Score=28.03 Aligned_cols=34 Identities=29% Similarity=0.448 Sum_probs=26.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEcccc
Q 030104 136 KHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGG 170 (183)
Q Consensus 136 ~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG 170 (183)
.+.+|+|+. .|.....+|.+|. .|++++.+++|.
T Consensus 20 ~~~kIvIIG-AG~AGLaAA~rLle~gf~~~~IlEa~ 54 (498)
T KOG0685|consen 20 GNAKIVIIG-AGIAGLAAATRLLENGFIDVLILEAS 54 (498)
T ss_pred CCceEEEEC-CchHHHHHHHHHHHhCCceEEEEEec
Confidence 455777775 5666678889999 999999998864
No 146
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=32.18 E-value=1e+02 Score=19.83 Aligned_cols=17 Identities=24% Similarity=0.540 Sum_probs=12.9
Q ss_pred CCCeEEEEcCCch-HHHH
Q 030104 136 KHDEIIVGCQSGK-RSMM 152 (183)
Q Consensus 136 ~~~~ivv~c~~g~-~s~~ 152 (183)
.+.+|+|.|..|. |+..
T Consensus 38 ~~~pvlVHC~~G~gRtg~ 55 (105)
T smart00012 38 SSGPVVVHCSAGVGRTGT 55 (105)
T ss_pred CCCCEEEEeCCCCChhhH
Confidence 3579999999876 6653
No 147
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=32.18 E-value=1e+02 Score=19.83 Aligned_cols=17 Identities=24% Similarity=0.540 Sum_probs=12.9
Q ss_pred CCCeEEEEcCCch-HHHH
Q 030104 136 KHDEIIVGCQSGK-RSMM 152 (183)
Q Consensus 136 ~~~~ivv~c~~g~-~s~~ 152 (183)
.+.+|+|.|..|. |+..
T Consensus 38 ~~~pvlVHC~~G~gRtg~ 55 (105)
T smart00404 38 SSGPVVVHCSAGVGRTGT 55 (105)
T ss_pred CCCCEEEEeCCCCChhhH
Confidence 3579999999876 6653
No 148
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=32.14 E-value=95 Score=28.61 Aligned_cols=46 Identities=13% Similarity=0.226 Sum_probs=34.4
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccH
Q 030104 125 KFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGF 171 (183)
Q Consensus 125 ~~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~ 171 (183)
..+.++...+.++.+++|+|.+-.++...+..|. .|+ ++..+.|++
T Consensus 430 ~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi-~~~~lh~~~ 476 (655)
T TIGR00631 430 DLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGI-KVRYLHSEI 476 (655)
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhcc-ceeeeeCCC
Confidence 3344444445677899999999999999999999 998 566666654
No 149
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=31.84 E-value=40 Score=30.59 Aligned_cols=36 Identities=22% Similarity=0.227 Sum_probs=30.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHH
Q 030104 136 KHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFA 172 (183)
Q Consensus 136 ~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~ 172 (183)
.+..-|+||.+-.....++.+|. .|+ ++..|.||+.
T Consensus 229 ~~~~GIIYc~sRk~~E~ia~~L~~~g~-~a~~YHaGl~ 265 (590)
T COG0514 229 LSKSGIIYCLTRKKVEELAEWLRKNGI-SAGAYHAGLS 265 (590)
T ss_pred cCCCeEEEEeeHHhHHHHHHHHHHCCC-ceEEecCCCC
Confidence 34568999999989999999999 998 6777888863
No 150
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=31.70 E-value=60 Score=29.44 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=30.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHH
Q 030104 136 KHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFA 172 (183)
Q Consensus 136 ~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~ 172 (183)
.+.+.||||++-..+..++..|. .|+ ++..+.||+.
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~~g~-~v~~~Ha~l~ 271 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQSRGI-SAAAYHAGLD 271 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCC-CEEEecCCCC
Confidence 45789999999888999999999 998 5777888763
No 151
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=31.48 E-value=1.3e+02 Score=20.21 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=24.3
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCchHH-HHHHHHHH-cCCC
Q 030104 125 KFVEEVSTRFRKHDEIIVGCQSGKRS-MMAATDLL-NGFA 162 (183)
Q Consensus 125 ~~~~~~~~~l~~~~~ivv~c~~g~~s-~~a~~~L~-~G~~ 162 (183)
++++.+.+ .+++++++.++..++ ...+..|. +|++
T Consensus 21 e~l~~L~~---~g~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 21 EALDALRE---RGKPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp HHHHHHHH---TTSEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred HHHHHHHH---cCCCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 44444443 468999999988766 57888889 9985
No 152
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=31.46 E-value=2.9e+02 Score=22.63 Aligned_cols=103 Identities=16% Similarity=0.179 Sum_probs=58.5
Q ss_pred CCCcccCHHHHHHHHhCCCEEE-EcCChhhHhccCC-CCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCc
Q 030104 70 GVPTSVPVRVAHELLQAGHRYL-DVRTPEEFSAGHA-TGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSG 147 (183)
Q Consensus 70 ~~~~~i~~~~~~~~~~~~~~lI-DvR~~~e~~~ghI-pgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g 147 (183)
+.+.-||...+..+.+.++++. |.|..... ..|+ .+..-+.+.+ ....+....+...+..++.|+++++.|
T Consensus 22 Gn~edITlRAl~~L~~aDvI~~edtr~t~~l-l~~~~i~~~~~~~~~------~~~~~~~~~i~~~l~~G~~ValvSdaG 94 (287)
T PRK14994 22 GNLADITQRALEVLQAVDLIAAEDTRHTGLL-LQHFAINARLFALHD------HNEQQKAETLLAKLQEGQNIALVSDAG 94 (287)
T ss_pred CChHHhhHHHHHHHHhCCEEEEeCCcchHHH-HhhcCCCCEEEEccC------CCHHHHHHHHHHHHHCCCeEEEEccCC
Confidence 3455688888887777775554 55643222 2222 1222222211 112344555666677788899998776
Q ss_pred h-----HHHHHHHHHH-cCCCCeeEcccc---HHHhhhCCCC
Q 030104 148 K-----RSMMAATDLL-NGFAGITDIAGG---FAAWRQNGLP 180 (183)
Q Consensus 148 ~-----~s~~a~~~L~-~G~~~v~~l~GG---~~~W~~~g~p 180 (183)
. ........++ .|+ +|.++-|- ..+....|.|
T Consensus 95 dP~I~dpg~~Lv~~~~~~gi-~v~vIPGiSA~~aA~a~sG~~ 135 (287)
T PRK14994 95 TPLINDPGYHLVRTCREAGI-RVVPLPGPCAAITALSAAGLP 135 (287)
T ss_pred CCceeCCHHHHHHHHHHCCC-CEEEeCCHHHHHHHHHHcCCC
Confidence 6 3446777788 898 57777663 2344444554
No 153
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=31.28 E-value=1.8e+02 Score=23.21 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=25.3
Q ss_pred HHHHHHHhcCC---CCCeEEEEcCCchH-HHHH----HHHHH-cCCCCeeE
Q 030104 125 KFVEEVSTRFR---KHDEIIVGCQSGKR-SMMA----ATDLL-NGFAGITD 166 (183)
Q Consensus 125 ~~~~~~~~~l~---~~~~ivv~c~~g~~-s~~a----~~~L~-~G~~~v~~ 166 (183)
..++.+...++ ++..+|+.|.+-.. |..+ -..|. .||++|++
T Consensus 122 ~~v~aik~~~ppl~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v 172 (265)
T COG4822 122 ICVEAIKDQIPPLNKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFV 172 (265)
T ss_pred HHHHHHHHhcCCcCcCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEE
Confidence 33444445555 77889999986542 2222 22445 89998874
No 154
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=31.14 E-value=88 Score=25.92 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=20.5
Q ss_pred cCCchH--HHHHHHHHH-cCCCCeeEccccHHHhhhC
Q 030104 144 CQSGKR--SMMAATDLL-NGFAGITDIAGGFAAWRQN 177 (183)
Q Consensus 144 c~~g~~--s~~a~~~L~-~G~~~v~~l~GG~~~W~~~ 177 (183)
|..|.+ +....+.|+ .|+ ++..+.-|-.+|...
T Consensus 122 cavGK~tTal~L~~~l~~~G~-~a~fvaTGQTGimia 157 (301)
T PF07755_consen 122 CAVGKMTTALELRRALRERGI-NAGFVATGQTGIMIA 157 (301)
T ss_dssp SSSSHHHHHHHHHHHHHHTT---EEEEE-SHHHHHCH
T ss_pred ccccHHHHHHHHHHHHHHcCC-CceEEecCCceEEEe
Confidence 444554 557788888 999 577777777777653
No 155
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=31.12 E-value=89 Score=27.28 Aligned_cols=37 Identities=14% Similarity=0.068 Sum_probs=26.6
Q ss_pred eEEEEcCCchHHHHHHHHHH---cCCCCeeEccccHHHhh
Q 030104 139 EIIVGCQSGKRSMMAATDLL---NGFAGITDIAGGFAAWR 175 (183)
Q Consensus 139 ~ivv~c~~g~~s~~a~~~L~---~G~~~v~~l~GG~~~W~ 175 (183)
.-+++|++|..+..+|-.|. -|-+.|..+.||+.+|.
T Consensus 114 ~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t 153 (457)
T PRK05639 114 PKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQT 153 (457)
T ss_pred CEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCcc
Confidence 46788999998887776665 35455667778887765
No 156
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=30.75 E-value=89 Score=30.88 Aligned_cols=35 Identities=20% Similarity=0.133 Sum_probs=29.8
Q ss_pred CCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHH
Q 030104 137 HDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFA 172 (183)
Q Consensus 137 ~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~ 172 (183)
+...||||.+-.....++..|. .|+ ++..|.||+.
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~Gi-ka~~YHAGLs 715 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEFGH-KAAFYHGSMD 715 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHCCC-CeeeeeCCCC
Confidence 4568999999888889999999 999 5778889863
No 157
>COG1204 Superfamily II helicase [General function prediction only]
Probab=30.69 E-value=1.7e+02 Score=27.63 Aligned_cols=83 Identities=16% Similarity=-0.025 Sum_probs=53.1
Q ss_pred CHHHHHHHHhCCCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHHHHHHH
Q 030104 76 PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAAT 155 (183)
Q Consensus 76 ~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~ 155 (183)
...++..+++.+.+.-|.|+..-+......+++...-..........+...+......+..+..++|+|++-..+...|.
T Consensus 192 N~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~ 271 (766)
T COG1204 192 NAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAK 271 (766)
T ss_pred CHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHH
Confidence 46778888877766778888777776666665543321110011123345555566667788999999999887776666
Q ss_pred HHH
Q 030104 156 DLL 158 (183)
Q Consensus 156 ~L~ 158 (183)
.++
T Consensus 272 ~l~ 274 (766)
T COG1204 272 KLR 274 (766)
T ss_pred HHH
Confidence 665
No 158
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=30.19 E-value=96 Score=27.88 Aligned_cols=35 Identities=20% Similarity=0.174 Sum_probs=29.1
Q ss_pred CCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHH
Q 030104 137 HDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFA 172 (183)
Q Consensus 137 ~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~ 172 (183)
+.+.||||++-..+..++..|. .|+ ++..+.||+.
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~~g~-~~~~~H~~l~ 259 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLESQGI-SALAYHAGLS 259 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCCC-CEEEEECCCC
Confidence 5678999999888889999999 998 5667777753
No 159
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=29.88 E-value=1e+02 Score=22.80 Aligned_cols=46 Identities=17% Similarity=0.240 Sum_probs=31.5
Q ss_pred HHHHhcCCCCCeEEEEcCCch--HHHHHHHHHH----cCCCCeeEccccHHHhh
Q 030104 128 EEVSTRFRKHDEIIVGCQSGK--RSMMAATDLL----NGFAGITDIAGGFAAWR 175 (183)
Q Consensus 128 ~~~~~~l~~~~~ivv~c~~g~--~s~~a~~~L~----~G~~~v~~l~GG~~~W~ 175 (183)
+..+..++ +..+|+.+..|. .|...+..+. .| .++..+-||-.++.
T Consensus 57 ~~il~~~~-~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g-~~i~FvIGGa~G~~ 108 (153)
T TIGR00246 57 DRILAAIG-KAHVVTLDIPGKPWTTPQLADTLEKWKTDG-RDVTLLIGGPEGLS 108 (153)
T ss_pred HHHHHhCC-CCeEEEEcCCCCcCCHHHHHHHHHHHhccC-CeEEEEEcCCCcCC
Confidence 34555666 467788887776 5777777775 45 47888889865553
No 160
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=29.84 E-value=68 Score=20.54 Aligned_cols=19 Identities=32% Similarity=0.564 Sum_probs=12.4
Q ss_pred eEEEEcCCchH-HHHHHHHH
Q 030104 139 EIIVGCQSGKR-SMMAATDL 157 (183)
Q Consensus 139 ~ivv~c~~g~~-s~~a~~~L 157 (183)
+|+++|.+|.. |..+...+
T Consensus 1 kilvvC~~G~~tS~ll~~kl 20 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNV 20 (86)
T ss_pred CEEEECCCCccHHHHHHHHH
Confidence 48999999984 44444344
No 161
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=29.68 E-value=1.1e+02 Score=26.41 Aligned_cols=38 Identities=18% Similarity=0.258 Sum_probs=27.9
Q ss_pred eEEEEcCCchHHHHHHHHHH---cCCCCeeEccccHHHhhh
Q 030104 139 EIIVGCQSGKRSMMAATDLL---NGFAGITDIAGGFAAWRQ 176 (183)
Q Consensus 139 ~ivv~c~~g~~s~~a~~~L~---~G~~~v~~l~GG~~~W~~ 176 (183)
.-+++|++|..+..+|-.|. -|=..|..+.||+.+|..
T Consensus 116 ~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ 156 (451)
T PRK06918 116 KKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTL 156 (451)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccch
Confidence 36889999998887776665 354567777888887753
No 162
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=29.61 E-value=93 Score=26.97 Aligned_cols=49 Identities=24% Similarity=0.254 Sum_probs=32.2
Q ss_pred HHHHHhcCCCCCeEEEEcCCchHHHHHHHHHH---cCCCCeeEccccHHHhh
Q 030104 127 VEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL---NGFAGITDIAGGFAAWR 175 (183)
Q Consensus 127 ~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~---~G~~~v~~l~GG~~~W~ 175 (183)
.+.+.+.++.+..-+++|++|..+..+|-.+. -|-..|..+.||+.+|.
T Consensus 99 a~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t 150 (433)
T PRK00615 99 AEELFSYLGLEDHKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHA 150 (433)
T ss_pred HHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCC
Confidence 34444434433345788899998887776665 35456667788888875
No 163
>PLN02347 GMP synthetase
Probab=29.45 E-value=1.2e+02 Score=27.21 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=31.1
Q ss_pred HHHHhcCCCCCeEEEEcCCchHHHHHHHHHH--cCCCCee--EccccHH
Q 030104 128 EEVSTRFRKHDEIIVGCQSGKRSMMAATDLL--NGFAGIT--DIAGGFA 172 (183)
Q Consensus 128 ~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~--~G~~~v~--~l~GG~~ 172 (183)
+.+.+.+.++.+|++...+|..|..++..+. .|. ++. .++.|+.
T Consensus 220 ~~i~~~~~~~~~vvvalSGGVDSsvla~l~~~alG~-~v~av~id~g~~ 267 (536)
T PLN02347 220 ELIKATVGPDEHVICALSGGVDSTVAATLVHKAIGD-RLHCVFVDNGLL 267 (536)
T ss_pred HHHHHHhccCCeEEEEecCChhHHHHHHHHHHHhCC-cEEEEEEeCCCC
Confidence 3444445657789999899999998888887 784 554 5666653
No 164
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=29.36 E-value=75 Score=27.56 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=29.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccH
Q 030104 136 KHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGF 171 (183)
Q Consensus 136 ~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~ 171 (183)
...+++|||++-..+..++..|. .|+ ++..+.|++
T Consensus 244 ~~~~~lVF~~t~~~~~~l~~~L~~~g~-~~~~lhg~~ 279 (456)
T PRK10590 244 NWQQVLVFTRTKHGANHLAEQLNKDGI-RSAAIHGNK 279 (456)
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHCCC-CEEEEECCC
Confidence 34689999999888889999999 998 577778875
No 165
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=29.14 E-value=94 Score=23.38 Aligned_cols=32 Identities=19% Similarity=0.150 Sum_probs=25.4
Q ss_pred CCCeEEEEcC---CchHHHHHHHHHH-cCCCCeeEc
Q 030104 136 KHDEIIVGCQ---SGKRSMMAATDLL-NGFAGITDI 167 (183)
Q Consensus 136 ~~~~ivv~c~---~g~~s~~a~~~L~-~G~~~v~~l 167 (183)
++++|+++++ +|.....++..|+ .|..+|+.+
T Consensus 96 ~gk~VLIVDDIidTG~Tl~~~~~~Lk~~Ga~~V~~a 131 (181)
T PRK09162 96 KGRTVLVVDDILDEGHTLAAIRDRCLEMGAAEVYSA 131 (181)
T ss_pred CCCEEEEEccccCcHHHHHHHHHHHHhCCCCEEEEE
Confidence 4678888765 7888888999999 998877643
No 166
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=28.81 E-value=82 Score=20.31 Aligned_cols=20 Identities=25% Similarity=0.612 Sum_probs=13.5
Q ss_pred CeEEEEcCCchHHH-HHHHHH
Q 030104 138 DEIIVGCQSGKRSM-MAATDL 157 (183)
Q Consensus 138 ~~ivv~c~~g~~s~-~a~~~L 157 (183)
.+|+++|.+|..+. .+...+
T Consensus 1 ~~ilivC~~G~~tS~~l~~~i 21 (89)
T cd05566 1 KKILVACGTGVATSTVVASKV 21 (89)
T ss_pred CEEEEECCCCccHHHHHHHHH
Confidence 36899999998443 444444
No 167
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=28.33 E-value=1.1e+02 Score=24.74 Aligned_cols=29 Identities=31% Similarity=0.497 Sum_probs=21.0
Q ss_pred CCCCCeEEEEcCCch-HHH--HHHHHHH-cCCC
Q 030104 134 FRKHDEIIVGCQSGK-RSM--MAATDLL-NGFA 162 (183)
Q Consensus 134 l~~~~~ivv~c~~g~-~s~--~a~~~L~-~G~~ 162 (183)
..++.+|+|+|..|. ||. .+|..+. .|..
T Consensus 152 ~~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~ 184 (285)
T KOG1716|consen 152 REKGGKVLVHCQAGVSRSATLVIAYLMKYEGLS 184 (285)
T ss_pred HhCCCeEEEEcCCccchhHHHHHHHHHHHcCCC
Confidence 356889999999887 666 5566666 6653
No 168
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=28.00 E-value=1.1e+02 Score=26.47 Aligned_cols=37 Identities=11% Similarity=0.055 Sum_probs=27.4
Q ss_pred eEEEEcCCchHHHHHHHHHH---cCCCCeeEccccHHHhh
Q 030104 139 EIIVGCQSGKRSMMAATDLL---NGFAGITDIAGGFAAWR 175 (183)
Q Consensus 139 ~ivv~c~~g~~s~~a~~~L~---~G~~~v~~l~GG~~~W~ 175 (183)
.-|++|++|..+..+|-.+. .|=+.|..++|++.+|.
T Consensus 104 ~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t 143 (445)
T PRK08593 104 KRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGST 143 (445)
T ss_pred CEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCc
Confidence 46788899998887776664 45456777888888774
No 169
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=27.83 E-value=1e+02 Score=26.60 Aligned_cols=47 Identities=19% Similarity=0.176 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHH--cCC--C--CeeEccccH
Q 030104 125 KFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL--NGF--A--GITDIAGGF 171 (183)
Q Consensus 125 ~~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~--~G~--~--~v~~l~GG~ 171 (183)
..+.+.+.++.+...-|++|++|..+-.+|-.|. .++ + ++....++|
T Consensus 87 ~~la~~L~~~s~~~d~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsF 139 (404)
T COG4992 87 AELAEKLVELSPFADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSF 139 (404)
T ss_pred HHHHHHHHhhCccccEEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCc
Confidence 3344444444335678999999999988887776 554 1 344445555
No 170
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=27.69 E-value=1e+02 Score=29.78 Aligned_cols=36 Identities=14% Similarity=0.361 Sum_probs=29.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHH--cCCCCeeEccccHH
Q 030104 136 KHDEIIVGCQSGKRSMMAATDLL--NGFAGITDIAGGFA 172 (183)
Q Consensus 136 ~~~~ivv~c~~g~~s~~a~~~L~--~G~~~v~~l~GG~~ 172 (183)
.+.++||+|+...........|+ .|+ ++..+.||+.
T Consensus 492 ~~~KvLVF~~~~~t~~~L~~~L~~~~Gi-~~~~ihG~~s 529 (956)
T PRK04914 492 RSEKVLVICAKAATALQLEQALREREGI-RAAVFHEGMS 529 (956)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHhhccCe-eEEEEECCCC
Confidence 35789999999998889999995 798 5667888864
No 171
>PRK06149 hypothetical protein; Provisional
Probab=27.65 E-value=98 Score=29.88 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=30.5
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHHH---cCCCCeeEccccHHHhh
Q 030104 134 FRKHDEIIVGCQSGKRSMMAATDLL---NGFAGITDIAGGFAAWR 175 (183)
Q Consensus 134 l~~~~~ivv~c~~g~~s~~a~~~L~---~G~~~v~~l~GG~~~W~ 175 (183)
++.+..-+++|++|..+..+|-.|. .|-+++..+++|+.+|.
T Consensus 637 ~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t 681 (972)
T PRK06149 637 APDGLDTVFLVNSGSEANDLAIRLAWAASGRRDVVSVLEAYHGWT 681 (972)
T ss_pred CCCCcCEEEEeCCchHHHHHHHHHHHHhcCCCeEEEEeCCCCCcC
Confidence 4444457888999998887776664 46566778888888775
No 172
>PRK06917 hypothetical protein; Provisional
Probab=27.64 E-value=1.2e+02 Score=26.42 Aligned_cols=46 Identities=13% Similarity=0.002 Sum_probs=29.1
Q ss_pred HHhcCCCCCeEEEEcCCchHHHHHHHHHH------cCC---CCeeEccccHHHhh
Q 030104 130 VSTRFRKHDEIIVGCQSGKRSMMAATDLL------NGF---AGITDIAGGFAAWR 175 (183)
Q Consensus 130 ~~~~l~~~~~ivv~c~~g~~s~~a~~~L~------~G~---~~v~~l~GG~~~W~ 175 (183)
+.+..+.....+++|++|..+..+|-.|. .|+ ..|..+.||+.+|.
T Consensus 83 L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t 137 (447)
T PRK06917 83 LSDLSPGDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGIT 137 (447)
T ss_pred HHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCcc
Confidence 33334444356889999998776665554 243 34667778887774
No 173
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=27.56 E-value=97 Score=25.53 Aligned_cols=31 Identities=19% Similarity=0.129 Sum_probs=24.7
Q ss_pred CCCeEEEEcC---CchHHHHHHHHHH-cCCCCeeE
Q 030104 136 KHDEIIVGCQ---SGKRSMMAATDLL-NGFAGITD 166 (183)
Q Consensus 136 ~~~~ivv~c~---~g~~s~~a~~~L~-~G~~~v~~ 166 (183)
+++++|++++ +|.....+++.|+ .|..+|+.
T Consensus 210 ~Gr~vIIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~ 244 (301)
T PRK07199 210 AGRTPVLVDDIVSTGRTLIEAARQLRAAGAASPDC 244 (301)
T ss_pred CCCEEEEEecccCcHHHHHHHHHHHHHCCCcEEEE
Confidence 4577888754 7888889999999 99987753
No 174
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=27.36 E-value=84 Score=24.08 Aligned_cols=31 Identities=19% Similarity=0.089 Sum_probs=19.5
Q ss_pred CCeEEEEc---CCchHHHHHHHHHH-cCCCCeeEc
Q 030104 137 HDEIIVGC---QSGKRSMMAATDLL-NGFAGITDI 167 (183)
Q Consensus 137 ~~~ivv~c---~~g~~s~~a~~~L~-~G~~~v~~l 167 (183)
++.+|+++ ++|..-..++..|+ .|-.+||.+
T Consensus 83 gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V~~~ 117 (184)
T PF14572_consen 83 GKICIIVDDIIDTGGTLIKAAELLKERGAKKVYAC 117 (184)
T ss_dssp TSEEEEEEEEESSTHHHHHHHHHHHHTTESEEEEE
T ss_pred CCeEeeecccccchHHHHHHHHHHHHcCCCEEEEE
Confidence 45555543 46666667777777 777766643
No 175
>PRK11018 hypothetical protein; Provisional
Probab=27.25 E-value=1.7e+02 Score=18.65 Aligned_cols=37 Identities=14% Similarity=0.114 Sum_probs=27.9
Q ss_pred HHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHH-cCCC
Q 030104 126 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFA 162 (183)
Q Consensus 126 ~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~ 162 (183)
..+..+..++.+..+.|.++.......+-.++. .||+
T Consensus 24 ~~kk~l~~l~~G~~L~V~~d~~~a~~di~~~~~~~G~~ 61 (78)
T PRK11018 24 ATLEALPQLKKGEILEVVSDCPQSINNIPLDARNHGYT 61 (78)
T ss_pred HHHHHHHhCCCCCEEEEEeCCccHHHHHHHHHHHcCCE
Confidence 445666778888888888887766667778888 9995
No 176
>PF08503 DapH_N: Tetrahydrodipicolinate succinyltransferase N-terminal; InterPro: IPR013710 This domain is found at the N terminus of tetrahydrodipicolinate N-acetyltransferase (DapH) which catalyses the acylation of L-2-amino-6-oxopimelate to 2-N-acetyl-6-oxopimelate in the meso-diaminopimelate/lysine biosynthetic pathway of bacteria, blue-green algae, and plants []. The N-terminal domain as defined here contains three alpha-helices and two twisted hairpin loops []. ; GO: 0047200 tetrahydrodipicolinate N-acetyltransferase activity; PDB: 3CJ8_A 3BV8_A 3R8Y_F.
Probab=27.18 E-value=17 Score=24.04 Aligned_cols=51 Identities=10% Similarity=0.071 Sum_probs=33.6
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHHHhhh
Q 030104 125 KFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQ 176 (183)
Q Consensus 125 ~~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~ 176 (183)
+.+...++.-.+.++|-+|+.+....... .-++ .|-.+-.++-|-|..+..
T Consensus 4 ~eII~~I~~skKkTPVKvYv~G~l~~~~~-~~~~~fg~~~~~vvfGd~~~i~~ 55 (83)
T PF08503_consen 4 EEIIRYIKNSKKKTPVKVYVKGDLAGIDF-EDVKVFGSGNFGVVFGDWDEIKP 55 (83)
T ss_dssp HHHHHHHHHCTTB-EEEEEEEESCTC----TTSEEEEESSEEEEEEEHHHHHH
T ss_pred HHHHHHHHhCCCCCCEEEEEeeeecCCCh-hheEEEeCCCcEEEEecHHHHHH
Confidence 45566666667889999999765333222 5566 777788888888877643
No 177
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=27.13 E-value=1e+02 Score=20.91 Aligned_cols=30 Identities=17% Similarity=0.103 Sum_probs=24.3
Q ss_pred CCCeEEEEc---CCchHHHHHHHHHH-cCCCCee
Q 030104 136 KHDEIIVGC---QSGKRSMMAATDLL-NGFAGIT 165 (183)
Q Consensus 136 ~~~~ivv~c---~~g~~s~~a~~~L~-~G~~~v~ 165 (183)
++++|++++ ++|.....+...|+ .|.+.|.
T Consensus 87 ~gk~vliVDDvi~tG~Tl~~~~~~L~~~g~~~v~ 120 (125)
T PF00156_consen 87 KGKRVLIVDDVIDTGGTLKEAIELLKEAGAKVVG 120 (125)
T ss_dssp TTSEEEEEEEEESSSHHHHHHHHHHHHTTBSEEE
T ss_pred cceeEEEEeeeEcccHHHHHHHHHHHhCCCcEEE
Confidence 567888876 48888889999999 9987654
No 178
>PRK06062 hypothetical protein; Provisional
Probab=27.11 E-value=1.1e+02 Score=26.50 Aligned_cols=42 Identities=7% Similarity=-0.022 Sum_probs=29.0
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHHH---cCCCCeeEccccHHHhh
Q 030104 134 FRKHDEIIVGCQSGKRSMMAATDLL---NGFAGITDIAGGFAAWR 175 (183)
Q Consensus 134 l~~~~~ivv~c~~g~~s~~a~~~L~---~G~~~v~~l~GG~~~W~ 175 (183)
.+.+-.-|++|++|..+..+|..+. -|-++|..+.||+.+|.
T Consensus 108 ~p~~~~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t 152 (451)
T PRK06062 108 APGDLSKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGT 152 (451)
T ss_pred CCCCCCEEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCC
Confidence 3333345788999998887776665 35456767788887774
No 179
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=27.07 E-value=1.2e+02 Score=25.90 Aligned_cols=42 Identities=14% Similarity=0.144 Sum_probs=26.6
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHHH--c----C---CCCeeEccccHHHhh
Q 030104 134 FRKHDEIIVGCQSGKRSMMAATDLL--N----G---FAGITDIAGGFAAWR 175 (183)
Q Consensus 134 l~~~~~ivv~c~~g~~s~~a~~~L~--~----G---~~~v~~l~GG~~~W~ 175 (183)
.+.+-.-+++|++|..+..+|-.+. . | =++|-.+.||+.+|.
T Consensus 98 ~p~~~~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t 148 (423)
T PRK05964 98 TPGGLDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDT 148 (423)
T ss_pred CCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCcc
Confidence 3333345778889988776665554 3 2 235667788887764
No 180
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=26.99 E-value=1e+02 Score=20.81 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=18.2
Q ss_pred CeEEEEcCCchHHH-----HHHHHHH-cCCC
Q 030104 138 DEIIVGCQSGKRSM-----MAATDLL-NGFA 162 (183)
Q Consensus 138 ~~ivv~c~~g~~s~-----~a~~~L~-~G~~ 162 (183)
.+|++.|..|.-+. .+-..|+ .|++
T Consensus 2 ~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~ 32 (93)
T COG3414 2 IKILAACGNGVGSSTMIKMKVEEVLKELGID 32 (93)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHHcCCC
Confidence 47999999998544 3445667 8885
No 181
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=26.86 E-value=1.2e+02 Score=26.23 Aligned_cols=47 Identities=9% Similarity=-0.062 Sum_probs=30.1
Q ss_pred HHHhcCCCCCeEEEEcCCchHHHHHHHHHH---cCCCCeeEccccHHHhh
Q 030104 129 EVSTRFRKHDEIIVGCQSGKRSMMAATDLL---NGFAGITDIAGGFAAWR 175 (183)
Q Consensus 129 ~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~---~G~~~v~~l~GG~~~W~ 175 (183)
.+.+..+..-.-+++|++|..+..+|-.+. -|-+.+..+.||+.+|.
T Consensus 92 ~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t 141 (443)
T PRK08360 92 KLIEIAPGDNPKVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGST 141 (443)
T ss_pred HHHHhCCCCCCEEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcC
Confidence 333334333235888999998887776665 35456667778777764
No 182
>PLN00197 beta-amylase; Provisional
Probab=26.85 E-value=93 Score=28.05 Aligned_cols=51 Identities=20% Similarity=0.320 Sum_probs=30.8
Q ss_pred ccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccc
Q 030104 101 AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAG 169 (183)
Q Consensus 101 ~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~G 169 (183)
.|.+-..+|||+. + |..+..+++..|.+.++.|.|.. ... +|++++.++.|
T Consensus 190 GGNVGD~~~IpLP-----------~---WV~~~g~~dpDifftDr~G~rn~----EyLSlg~D~~pvl~G 241 (573)
T PLN00197 190 GGNVGDSCTIPLP-----------K---WVVEEVDKDPDLAYTDQWGRRNY----EYVSLGCDTLPVLKG 241 (573)
T ss_pred CCCCCCcccccCC-----------H---HHHHhhccCCCceeecCCCCccc----ceeccccccccccCC
Confidence 4566678889884 3 33333345556777777777654 223 66666666554
No 183
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=26.36 E-value=1.8e+02 Score=22.59 Aligned_cols=48 Identities=21% Similarity=0.240 Sum_probs=32.9
Q ss_pred CCCCCeEEEEcC---CchHHHHHHHHHH-cCCCCe---eEcc---ccHHHhhhCCCCC
Q 030104 134 FRKHDEIIVGCQ---SGKRSMMAATDLL-NGFAGI---TDIA---GGFAAWRQNGLPT 181 (183)
Q Consensus 134 l~~~~~ivv~c~---~g~~s~~a~~~L~-~G~~~v---~~l~---GG~~~W~~~g~pv 181 (183)
+.++++|+++++ +|.....++..|+ .|..-+ .+++ ||.......|.|+
T Consensus 115 ~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~vv~v~vlvdr~~~~~~~l~~~gi~v 172 (206)
T PRK13809 115 FTPGQTCLVINDMVSSGKSIIETAVALEEEGLVVREALVFLDRQKGACQPLGPQGIKL 172 (206)
T ss_pred cCCCCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECcccHHHHHHhcCCCE
Confidence 346788999886 7888888999999 987532 3445 5544444566665
No 184
>PF10652 DUF2480: Protein of unknown function (DUF2480); InterPro: IPR018914 All the members of this family are uncharacterised proteins, but the environment in which they are found on the bacterial genome suggests a function as a glucose-6-phosphate isomerase (5.3.1.9 from EC). This could not, however, be confirmed.
Probab=26.30 E-value=2.8e+02 Score=20.86 Aligned_cols=73 Identities=12% Similarity=0.123 Sum_probs=42.9
Q ss_pred HHHHHhCCCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCC----CCCeEEEEcCCchHHHHHHH
Q 030104 80 AHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR----KHDEIIVGCQSGKRSMMAAT 155 (183)
Q Consensus 80 ~~~~~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~----~~~~ivv~c~~g~~s~~a~~ 155 (183)
+++..+++.+.+|. +.-|..|.. +.+.+.+.+..++..-+..+++.....+ +++-|.++|....--...|.
T Consensus 6 vNkVA~S~LitfDL--edyyp~g~r---~~~Dik~~L~~GliLkEKdFR~~lk~~DWsqY~~~~Vai~CStDAIvP~WAy 80 (167)
T PF10652_consen 6 VNKVANSGLITFDL--EDYYPKGER---VVFDIKDWLFEGLILKEKDFREFLKEHDWSQYQDKYVAIYCSTDAIVPAWAY 80 (167)
T ss_pred HHHHhccCceEeeH--HHhCCCCcE---EEEecHHHHhhhhhhhhHHHHHHHHhcCHHHhCCcEEEEEcccceehhhhHH
Confidence 44444566777887 233344433 4556655555565555555566665544 57889999998764444444
Q ss_pred HH
Q 030104 156 DL 157 (183)
Q Consensus 156 ~L 157 (183)
+|
T Consensus 81 ML 82 (167)
T PF10652_consen 81 ML 82 (167)
T ss_pred HH
Confidence 44
No 185
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=26.13 E-value=74 Score=27.49 Aligned_cols=34 Identities=15% Similarity=0.363 Sum_probs=27.8
Q ss_pred eEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHHH
Q 030104 139 EIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAA 173 (183)
Q Consensus 139 ~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~ 173 (183)
.-|++|..-..+...+..|. .|| .|..|.|-+..
T Consensus 332 qsiIFc~tk~ta~~l~~~m~~~Gh-~V~~l~G~l~~ 366 (477)
T KOG0332|consen 332 QSIIFCHTKATAMWLYEEMRAEGH-QVSLLHGDLTV 366 (477)
T ss_pred heEEEEeehhhHHHHHHHHHhcCc-eeEEeeccchh
Confidence 35778888888888999999 999 69999987653
No 186
>PRK00919 GMP synthase subunit B; Validated
Probab=26.09 E-value=1.6e+02 Score=24.42 Aligned_cols=37 Identities=22% Similarity=0.202 Sum_probs=26.9
Q ss_pred cCCCCCeEEEEcCCchHHHHHHHHHH--cCCCCee--EccccH
Q 030104 133 RFRKHDEIIVGCQSGKRSMMAATDLL--NGFAGIT--DIAGGF 171 (183)
Q Consensus 133 ~l~~~~~ivv~c~~g~~s~~a~~~L~--~G~~~v~--~l~GG~ 171 (183)
.+.. .++++...+|..|..++..+. .|+ ++. .++.|+
T Consensus 18 ~~~~-~kVlVa~SGGVDSsvla~la~~~lG~-~v~aV~vD~G~ 58 (307)
T PRK00919 18 EIGD-GKAIIALSGGVDSSVAAVLAHRAIGD-RLTPVFVDTGL 58 (307)
T ss_pred HhCC-CCEEEEecCCHHHHHHHHHHHHHhCC-eEEEEEEECCC
Confidence 3444 788888889999998888886 686 443 556665
No 187
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=26.08 E-value=1e+02 Score=19.35 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=15.4
Q ss_pred eEEEEcCCchH-HHHHHHHHH
Q 030104 139 EIIVGCQSGKR-SMMAATDLL 158 (183)
Q Consensus 139 ~ivv~c~~g~~-s~~a~~~L~ 158 (183)
+++++|.+|.. +..+...++
T Consensus 2 kilivC~~G~~~s~~l~~~l~ 22 (85)
T cd05568 2 KALVVCPSGIGTSRLLKSKLK 22 (85)
T ss_pred eEEEECCCCHHHHHHHHHHHH
Confidence 68999999975 446777776
No 188
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=25.96 E-value=1e+02 Score=27.36 Aligned_cols=33 Identities=12% Similarity=0.035 Sum_probs=27.4
Q ss_pred CCCeEEEEcC---CchHHHHHHHHHH-cCCCCeeEcc
Q 030104 136 KHDEIIVGCQ---SGKRSMMAATDLL-NGFAGITDIA 168 (183)
Q Consensus 136 ~~~~ivv~c~---~g~~s~~a~~~L~-~G~~~v~~l~ 168 (183)
++++|+++++ +|.....+++.|+ .|.++|+++.
T Consensus 357 ~gK~VlLVDDvitTGaTl~~~~~~L~~aGA~~V~v~v 393 (501)
T PRK09246 357 KGKNVLLVDDSIVRGTTSEQIVQMAREAGAKKVYFAS 393 (501)
T ss_pred cCCeEEEEeccccccHHHHHHHHHHHHcCCCEEEEEE
Confidence 4688999987 5888889999999 9998887654
No 189
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=25.58 E-value=1.7e+02 Score=24.51 Aligned_cols=38 Identities=16% Similarity=0.020 Sum_probs=29.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHH-cCCC-CeeEccccHHH
Q 030104 136 KHDEIIVGCQSGKRSMMAATDLL-NGFA-GITDIAGGFAA 173 (183)
Q Consensus 136 ~~~~ivv~c~~g~~s~~a~~~L~-~G~~-~v~~l~GG~~~ 173 (183)
++.+++|+|++-..+..++..|+ .|.. .+..+.|....
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~ 310 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPK 310 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCH
Confidence 45789999999999999999999 8753 56666665443
No 190
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=25.52 E-value=1.3e+02 Score=25.96 Aligned_cols=38 Identities=24% Similarity=0.358 Sum_probs=27.5
Q ss_pred CeEEEEcCCchHHHHHHHHHH---cCCCCeeEccccHHHhh
Q 030104 138 DEIIVGCQSGKRSMMAATDLL---NGFAGITDIAGGFAAWR 175 (183)
Q Consensus 138 ~~ivv~c~~g~~s~~a~~~L~---~G~~~v~~l~GG~~~W~ 175 (183)
.+++++|++|..+..+|-.+. -|=.+|..+.|++.+|.
T Consensus 102 ~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t 142 (442)
T TIGR00709 102 YKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMT 142 (442)
T ss_pred ccEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCch
Confidence 467888899998887776665 35456777788877764
No 191
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=25.51 E-value=1.2e+02 Score=25.28 Aligned_cols=31 Identities=13% Similarity=0.086 Sum_probs=24.5
Q ss_pred CCCeEEEEc---CCchHHHHHHHHHH-cCCCCeeE
Q 030104 136 KHDEIIVGC---QSGKRSMMAATDLL-NGFAGITD 166 (183)
Q Consensus 136 ~~~~ivv~c---~~g~~s~~a~~~L~-~G~~~v~~ 166 (183)
+++++|+++ ++|..-..+++.|+ .|..+|+.
T Consensus 216 ~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~ 250 (319)
T PRK04923 216 QGKTCVLVDDLVDTAGTLCAAAAALKQRGALKVVA 250 (319)
T ss_pred CCCEEEEEecccCchHHHHHHHHHHHHCCCCEEEE
Confidence 346677765 58888889999999 99988763
No 192
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=25.45 E-value=1.4e+02 Score=19.33 Aligned_cols=26 Identities=23% Similarity=0.158 Sum_probs=15.1
Q ss_pred CeEEEEcCCch--HHHHHHHHHH-cCCCC
Q 030104 138 DEIIVGCQSGK--RSMMAATDLL-NGFAG 163 (183)
Q Consensus 138 ~~ivv~c~~g~--~s~~a~~~L~-~G~~~ 163 (183)
-+|-|+=.++. .+.+++..|+ .||..
T Consensus 4 v~V~VlNgt~~~GlA~~~a~~L~~~Gf~v 32 (90)
T PF13399_consen 4 VRVEVLNGTGVSGLAARVADALRNRGFTV 32 (90)
T ss_pred eEEEEEECcCCcCHHHHHHHHHHHCCCce
Confidence 34555544443 4556777777 77753
No 193
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=25.29 E-value=1.4e+02 Score=20.70 Aligned_cols=10 Identities=20% Similarity=0.198 Sum_probs=6.0
Q ss_pred CCCEEEEcCC
Q 030104 86 AGHRYLDVRT 95 (183)
Q Consensus 86 ~~~~lIDvR~ 95 (183)
.++.+++...
T Consensus 26 ~G~~vi~lG~ 35 (122)
T cd02071 26 AGFEVIYTGL 35 (122)
T ss_pred CCCEEEECCC
Confidence 4477777653
No 194
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.18 E-value=1.9e+02 Score=25.26 Aligned_cols=53 Identities=13% Similarity=0.118 Sum_probs=34.5
Q ss_pred HHHHHHHHhcCCCCCeEEEEcCCch----------HHHHHHHHHH-cCCCCeeEccccHHHhhhC
Q 030104 124 LKFVEEVSTRFRKHDEIIVGCQSGK----------RSMMAATDLL-NGFAGITDIAGGFAAWRQN 177 (183)
Q Consensus 124 ~~~~~~~~~~l~~~~~ivv~c~~g~----------~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~ 177 (183)
.+|+++.+.+-.-.+.|||+..+.. .+..+|..++ .|. +|-.+-..+.-|..+
T Consensus 205 rEFIE~~Lg~egl~rsViVvATSD~s~l~R~~aa~~At~IAEyFRDqG~-~VLL~mDSlTRfA~A 268 (441)
T COG1157 205 REFIEKDLGEEGLKRSVVVVATSDESALMRLKAAFTATTIAEYFRDQGK-RVLLIMDSLTRFAMA 268 (441)
T ss_pred HHHHHHhcchhhccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCC-eEEEEeecHHHHHHH
Confidence 4566655544334566777766543 2346777888 896 788788888888653
No 195
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=25.18 E-value=1.8e+02 Score=23.95 Aligned_cols=33 Identities=15% Similarity=0.066 Sum_probs=25.2
Q ss_pred CCCeEEEEcC---CchHHHHHHHHHH-cCCCCeeEcc
Q 030104 136 KHDEIIVGCQ---SGKRSMMAATDLL-NGFAGITDIA 168 (183)
Q Consensus 136 ~~~~ivv~c~---~g~~s~~a~~~L~-~G~~~v~~l~ 168 (183)
++++++++++ +|..-..+++.|+ .|..+|+.+.
T Consensus 200 ~gr~viIVDDIi~TG~Tl~~aa~~Lk~~Ga~~I~~~~ 236 (304)
T PRK03092 200 EGRTCVLVDDMIDTGGTIAGAVRALKEAGAKDVIIAA 236 (304)
T ss_pred CCCEEEEEccccCcHHHHHHHHHHHHhcCCCeEEEEE
Confidence 3567888754 7888889999999 9998876443
No 196
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=25.16 E-value=1.1e+02 Score=21.50 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=26.2
Q ss_pred CeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHHHhhh
Q 030104 138 DEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQ 176 (183)
Q Consensus 138 ~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~ 176 (183)
++|+|+ ..|.-...++..|. .|+.++.++|+..-.+.+
T Consensus 3 ~~v~ii-G~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~n 41 (135)
T PF00899_consen 3 KRVLII-GAGGVGSEVAKNLARSGVGKITLVDDDIVEPSN 41 (135)
T ss_dssp -EEEEE-STSHHHHHHHHHHHHHTTSEEEEEESSBB-GGG
T ss_pred CEEEEE-CcCHHHHHHHHHHHHhCCCceeecCCcceeecc
Confidence 445554 56666667888998 999999999887655444
No 197
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=25.08 E-value=1.1e+02 Score=26.94 Aligned_cols=34 Identities=12% Similarity=0.061 Sum_probs=28.0
Q ss_pred CCCeEEEEcC---CchHHHHHHHHHH-cCCCCeeEccc
Q 030104 136 KHDEIIVGCQ---SGKRSMMAATDLL-NGFAGITDIAG 169 (183)
Q Consensus 136 ~~~~ivv~c~---~g~~s~~a~~~L~-~G~~~v~~l~G 169 (183)
++++|+++++ +|..+..+++.|+ .|.+.|.++.+
T Consensus 347 ~gk~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~v~i~ 384 (471)
T PRK06781 347 EGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIA 384 (471)
T ss_pred CCceEEEEeceeccchHHHHHHHHHHHcCCcEEEEEEC
Confidence 4688999987 5888889999999 99988876543
No 198
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=25.03 E-value=1.2e+02 Score=20.97 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=20.8
Q ss_pred CCCCeEEEEcCCch--HHHHHHHHHH-cCCC
Q 030104 135 RKHDEIIVGCQSGK--RSMMAATDLL-NGFA 162 (183)
Q Consensus 135 ~~~~~ivv~c~~g~--~s~~a~~~L~-~G~~ 162 (183)
.+++.|.|+|.+.. .+..++..|. .|++
T Consensus 7 ~~g~di~iia~G~~~~~al~A~~~L~~~Gi~ 37 (124)
T PF02780_consen 7 REGADITIIAYGSMVEEALEAAEELEEEGIK 37 (124)
T ss_dssp ESSSSEEEEEETTHHHHHHHHHHHHHHTTCE
T ss_pred eCCCCEEEEeehHHHHHHHHHHHHHHHcCCc
Confidence 45667777776655 6778999999 9873
No 199
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=25.02 E-value=1e+02 Score=26.78 Aligned_cols=35 Identities=11% Similarity=0.278 Sum_probs=28.8
Q ss_pred CCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHH
Q 030104 137 HDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFA 172 (183)
Q Consensus 137 ~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~ 172 (183)
..++||||++-..+..++..|. .|+ .+..+.|++.
T Consensus 335 ~~~~IVF~~s~~~~~~l~~~L~~~~~-~~~~~~g~~~ 370 (475)
T PRK01297 335 WERVMVFANRKDEVRRIEERLVKDGI-NAAQLSGDVP 370 (475)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCC-CEEEEECCCC
Confidence 4589999999888888999999 998 5777777754
No 200
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=24.83 E-value=99 Score=19.42 Aligned_cols=30 Identities=17% Similarity=0.376 Sum_probs=24.1
Q ss_pred CCCCcccCHHHHHHHHhCC--CEEEEcCChhh
Q 030104 69 VGVPTSVPVRVAHELLQAG--HRYLDVRTPEE 98 (183)
Q Consensus 69 ~~~~~~i~~~~~~~~~~~~--~~lIDvR~~~e 98 (183)
......|+.++++++..++ +.++|..+-++
T Consensus 14 T~~s~YiTL~di~~lV~~g~~~~V~D~ktgeD 45 (64)
T PF07879_consen 14 TETSSYITLEDIAQLVREGEDFKVVDAKTGED 45 (64)
T ss_pred CCCceeEeHHHHHHHHHCCCeEEEEECCCCcc
Confidence 3455678999999999877 89999987554
No 201
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=24.75 E-value=1.4e+02 Score=25.98 Aligned_cols=42 Identities=12% Similarity=0.066 Sum_probs=29.1
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHHH---cCCCCeeEccccHHHhh
Q 030104 134 FRKHDEIIVGCQSGKRSMMAATDLL---NGFAGITDIAGGFAAWR 175 (183)
Q Consensus 134 l~~~~~ivv~c~~g~~s~~a~~~L~---~G~~~v~~l~GG~~~W~ 175 (183)
.+....-+++|++|..+..++..|. .|-.++..+.|++.+|.
T Consensus 126 ~p~~~~~v~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t 170 (459)
T PRK06082 126 AGGELNRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGAS 170 (459)
T ss_pred CCCCCCEEEECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCcc
Confidence 3333346888999998887777665 35456777788777764
No 202
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=24.74 E-value=1.4e+02 Score=26.34 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=28.9
Q ss_pred CeEEEEcCCchHHHHHHHHHH---cCCCCeeEccccHHHhh
Q 030104 138 DEIIVGCQSGKRSMMAATDLL---NGFAGITDIAGGFAAWR 175 (183)
Q Consensus 138 ~~ivv~c~~g~~s~~a~~~L~---~G~~~v~~l~GG~~~W~ 175 (183)
-.-+.+|++|..+..++-.|. -|=++|..+.|++.+|.
T Consensus 155 ~~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~ 195 (474)
T PLN02482 155 VEMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHA 195 (474)
T ss_pred CCEEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCc
Confidence 346788999999888777775 36556777789888875
No 203
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=24.71 E-value=1.5e+02 Score=21.75 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=29.1
Q ss_pred HHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccH
Q 030104 126 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGF 171 (183)
Q Consensus 126 ~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~ 171 (183)
++......+.++..++++..+......+...|. .||....+-..|+
T Consensus 122 ~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~ 168 (179)
T TIGR00537 122 FLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAERGL 168 (179)
T ss_pred HHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEeec
Confidence 444444556677777666554444667888888 9996555555553
No 204
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=24.57 E-value=2.5e+02 Score=19.48 Aligned_cols=43 Identities=7% Similarity=0.094 Sum_probs=28.8
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCchHHH---HHHHHHH-cCCCCeeEc
Q 030104 125 KFVEEVSTRFRKHDEIIVGCQSGKRSM---MAATDLL-NGFAGITDI 167 (183)
Q Consensus 125 ~~~~~~~~~l~~~~~ivv~c~~g~~s~---~a~~~L~-~G~~~v~~l 167 (183)
+.+...+....++..|++-++...... .+...++ .|+.++.+.
T Consensus 72 ~~L~~~l~~~~~~~~v~i~aD~~~~~~~vv~v~d~~~~~G~~~v~l~ 118 (121)
T TIGR02804 72 EELEAEIAQLNKDQKVTLKSDKEAKFQDFVTITDMLKAKEHENVQIV 118 (121)
T ss_pred HHHHHHHHhhCCCCeEEEEeCCCCCHhHHHHHHHHHHHcCCCeEEEE
Confidence 444444444556778888888776433 5666777 999988753
No 205
>PLN02803 beta-amylase
Probab=24.33 E-value=1e+02 Score=27.61 Aligned_cols=51 Identities=18% Similarity=0.361 Sum_probs=30.7
Q ss_pred ccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccc
Q 030104 101 AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAG 169 (183)
Q Consensus 101 ~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~G 169 (183)
.|.+=..+|||+. + |..+..+.+..|.+.++.|.|.. ... +|+|++.++.|
T Consensus 170 GGNVGD~~~IpLP-----------~---WV~e~~~~~pDi~ftDr~G~rn~----EyLSlg~D~~pvl~G 221 (548)
T PLN02803 170 GGNVGDSCSIPLP-----------P---WVLEEMSKNPDLVYTDRSGRRNP----EYISLGCDSLPVLRG 221 (548)
T ss_pred CCCCCCcccccCC-----------H---HHHHhhhcCCCceEecCCCCccc----ceeccccccchhccC
Confidence 4566678889984 3 33333345556777777777654 223 56666666655
No 206
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=24.31 E-value=1.6e+02 Score=19.52 Aligned_cols=28 Identities=29% Similarity=0.287 Sum_probs=22.6
Q ss_pred CCeEEEEcCCchHHHHHHHHHH-cCCCCe
Q 030104 137 HDEIIVGCQSGKRSMMAATDLL-NGFAGI 164 (183)
Q Consensus 137 ~~~ivv~c~~g~~s~~a~~~L~-~G~~~v 164 (183)
+-+|+|-|..|..+..+-..|. +|.+.+
T Consensus 21 ~~kivvD~~~G~~~~~~~~ll~~lg~~~~ 49 (104)
T PF02879_consen 21 GLKIVVDCMNGAGSDILPRLLERLGCDVI 49 (104)
T ss_dssp TCEEEEE-TTSTTHHHHHHHHHHTTCEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCcEE
Confidence 4589999999999998998999 998433
No 207
>PRK11595 DNA utilization protein GntX; Provisional
Probab=23.96 E-value=1.3e+02 Score=23.50 Aligned_cols=32 Identities=22% Similarity=0.208 Sum_probs=26.0
Q ss_pred CCCeEEEEcC---CchHHHHHHHHHH-cCCCCeeEc
Q 030104 136 KHDEIIVGCQ---SGKRSMMAATDLL-NGFAGITDI 167 (183)
Q Consensus 136 ~~~~ivv~c~---~g~~s~~a~~~L~-~G~~~v~~l 167 (183)
.+++|+++++ +|.....++..|. .|...|+.+
T Consensus 186 ~~~~vllvDDv~tTG~Tl~~~~~~L~~~g~~~V~~~ 221 (227)
T PRK11595 186 QGQHMAIVDDVVTTGSTVAEIAQLLLRNGAASVQVW 221 (227)
T ss_pred CCCEEEEEeeeecchHHHHHHHHHHHHcCCcEEEEE
Confidence 4567888876 7888889999999 998888754
No 208
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=23.96 E-value=2e+02 Score=21.79 Aligned_cols=47 Identities=15% Similarity=0.125 Sum_probs=34.4
Q ss_pred HHHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccH
Q 030104 124 LKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGF 171 (183)
Q Consensus 124 ~~~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~ 171 (183)
..+++.....+.++..+++.+............++ .|+ .+.+.+||+
T Consensus 136 ~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~ 183 (202)
T PRK00121 136 PEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGG-FLVSEAGDY 183 (202)
T ss_pred HHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcc-cccccchhh
Confidence 56777777788888888888877666667788888 887 455555544
No 209
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=23.59 E-value=1.6e+02 Score=25.09 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=26.5
Q ss_pred eEEEEcCCchHHHHHHHHHH---cCCCCeeEccccHHHhh
Q 030104 139 EIIVGCQSGKRSMMAATDLL---NGFAGITDIAGGFAAWR 175 (183)
Q Consensus 139 ~ivv~c~~g~~s~~a~~~L~---~G~~~v~~l~GG~~~W~ 175 (183)
.-+++|++|..+..+|..|. .|=+.|..+.||+.+|.
T Consensus 95 ~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 134 (420)
T TIGR00700 95 KKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRT 134 (420)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCc
Confidence 45788889998887776665 45556767788877663
No 210
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=23.59 E-value=2.6e+02 Score=24.63 Aligned_cols=87 Identities=18% Similarity=0.141 Sum_probs=50.7
Q ss_pred CHHHHHHHHhC----C-CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHH
Q 030104 76 PVRVAHELLQA----G-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150 (183)
Q Consensus 76 ~~~~~~~~~~~----~-~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s 150 (183)
+.+++.++++. + -.+|.|++.+|.+..-=-|+--|-.+-..-..+..+.+...++...+++ .+++++.||..+
T Consensus 144 ~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~~a~iiGiNnRdL~t~~vd~~~~~~l~~~ip~--~~~~vseSGI~t 221 (454)
T PRK09427 144 DDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIALGAKVIGINNRNLRDLSIDLNRTRELAPLIPA--DVIVISESGIYT 221 (454)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCC--CcEEEEeCCCCC
Confidence 44455555432 3 6899999999987432224433332211112333455666777777764 478888999977
Q ss_pred HHHHHHHHcCCCCe
Q 030104 151 MMAATDLLNGFAGI 164 (183)
Q Consensus 151 ~~a~~~L~~G~~~v 164 (183)
..-+..++.|++-+
T Consensus 222 ~~d~~~~~~~~dav 235 (454)
T PRK09427 222 HAQVRELSPFANGF 235 (454)
T ss_pred HHHHHHHHhcCCEE
Confidence 65555566446543
No 211
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=23.46 E-value=90 Score=21.57 Aligned_cols=27 Identities=11% Similarity=0.113 Sum_probs=20.2
Q ss_pred EEEcCCchHHHHHHHHHH-cCCCCeeEc
Q 030104 141 IVGCQSGKRSMMAATDLL-NGFAGITDI 167 (183)
Q Consensus 141 vv~c~~g~~s~~a~~~L~-~G~~~v~~l 167 (183)
|++.++|.-+.++.+.++ +|++-|.+.
T Consensus 5 vLIanrGeia~r~~ra~r~~Gi~tv~v~ 32 (110)
T PF00289_consen 5 VLIANRGEIAVRIIRALRELGIETVAVN 32 (110)
T ss_dssp EEESS-HHHHHHHHHHHHHTTSEEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHhCCcceecc
Confidence 566677888889999999 999765544
No 212
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=23.44 E-value=1.8e+02 Score=25.21 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=27.6
Q ss_pred eEEEEcCCchHHHHHHHHHH---cCCCCeeEccccHHHhh
Q 030104 139 EIIVGCQSGKRSMMAATDLL---NGFAGITDIAGGFAAWR 175 (183)
Q Consensus 139 ~ivv~c~~g~~s~~a~~~L~---~G~~~v~~l~GG~~~W~ 175 (183)
.-+++|++|..+..+|-.+. .|-++|..+.||+.+|.
T Consensus 116 ~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t 155 (441)
T PRK05769 116 KKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRT 155 (441)
T ss_pred CEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCcc
Confidence 46889999998887666665 46556777788887775
No 213
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=23.30 E-value=1.5e+02 Score=25.85 Aligned_cols=44 Identities=9% Similarity=0.083 Sum_probs=28.8
Q ss_pred hcCCCCCeEEEEcCCchHHHHHHHHHH-c-----CC---CCeeEccccHHHhh
Q 030104 132 TRFRKHDEIIVGCQSGKRSMMAATDLL-N-----GF---AGITDIAGGFAAWR 175 (183)
Q Consensus 132 ~~l~~~~~ivv~c~~g~~s~~a~~~L~-~-----G~---~~v~~l~GG~~~W~ 175 (183)
+..+..-.-+++|++|..+..+|..|. . |+ +++..+.||+.+|.
T Consensus 110 ~~~p~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t 162 (460)
T PRK06916 110 EVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDT 162 (460)
T ss_pred HhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCccc
Confidence 334433346899999998777666655 3 54 34667788887764
No 214
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=23.20 E-value=1.5e+02 Score=24.77 Aligned_cols=30 Identities=17% Similarity=0.212 Sum_probs=24.0
Q ss_pred CCeEEEEcC---CchHHHHHHHHHH-cCCCCeeE
Q 030104 137 HDEIIVGCQ---SGKRSMMAATDLL-NGFAGITD 166 (183)
Q Consensus 137 ~~~ivv~c~---~g~~s~~a~~~L~-~G~~~v~~ 166 (183)
++.+|++++ +|..-..++..|+ .|-++|+.
T Consensus 214 gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GAk~V~a 247 (314)
T COG0462 214 GKDVVIVDDIIDTGGTIAKAAKALKERGAKKVYA 247 (314)
T ss_pred CCEEEEEeccccccHHHHHHHHHHHHCCCCeEEE
Confidence 456777765 6778889999999 99998874
No 215
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=23.10 E-value=2.3e+02 Score=26.54 Aligned_cols=37 Identities=14% Similarity=0.072 Sum_probs=28.0
Q ss_pred CCCCeEEEEcCCch----HHHHHHHHHH-cCCCCeeEccccH
Q 030104 135 RKHDEIIVGCQSGK----RSMMAATDLL-NGFAGITDIAGGF 171 (183)
Q Consensus 135 ~~~~~ivv~c~~g~----~s~~a~~~L~-~G~~~v~~l~GG~ 171 (183)
..+..||++|.... ....++..|+ .|.+++.++.||.
T Consensus 631 ~~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G~~~v~vl~GG~ 672 (714)
T PRK09426 631 ENDVHVVGVSSLAAGHKTLVPALIEALKKLGREDIMVVVGGV 672 (714)
T ss_pred HcCCCEEEEeccchhhHHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence 35677999997532 4457888889 9988898888874
No 216
>PTZ00424 helicase 45; Provisional
Probab=22.95 E-value=1.2e+02 Score=25.33 Aligned_cols=35 Identities=11% Similarity=0.325 Sum_probs=29.0
Q ss_pred CCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHH
Q 030104 137 HDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFA 172 (183)
Q Consensus 137 ~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~ 172 (183)
..++++||++-..+...+..|. .|+ .+..+.|++.
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~~~~-~~~~~h~~~~ 302 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHERDF-TVSCMHGDMD 302 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHHCCC-cEEEEeCCCC
Confidence 4578999999888888999999 988 6778888863
No 217
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=22.77 E-value=1e+02 Score=21.22 Aligned_cols=21 Identities=19% Similarity=0.476 Sum_probs=15.7
Q ss_pred CeEEEEcCCchHHHHHHHHHH
Q 030104 138 DEIIVGCQSGKRSMMAATDLL 158 (183)
Q Consensus 138 ~~ivv~c~~g~~s~~a~~~L~ 158 (183)
++|.++|..|......+..++
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~ 22 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMK 22 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHH
Confidence 479999999997665555554
No 218
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=22.73 E-value=1.4e+02 Score=24.91 Aligned_cols=31 Identities=23% Similarity=0.114 Sum_probs=24.7
Q ss_pred CCCeEEEEc---CCchHHHHHHHHHH-cCCCCeeE
Q 030104 136 KHDEIIVGC---QSGKRSMMAATDLL-NGFAGITD 166 (183)
Q Consensus 136 ~~~~ivv~c---~~g~~s~~a~~~L~-~G~~~v~~ 166 (183)
+++++|+++ ++|..-..+++.|+ .|...|+.
T Consensus 217 ~gk~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~ 251 (323)
T PRK02458 217 AGKKAILIDDILNTGKTFAEAAKIVEREGATEIYA 251 (323)
T ss_pred CCCEEEEEcceeCcHHHHHHHHHHHHhCCCCcEEE
Confidence 456788865 47888889999999 99988763
No 219
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=22.57 E-value=1.4e+02 Score=18.64 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=20.2
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHHH
Q 030104 134 FRKHDEIIVGCQSGKRSMMAATDLL 158 (183)
Q Consensus 134 l~~~~~ivv~c~~g~~s~~a~~~L~ 158 (183)
+..+..|.++|+++..+......++
T Consensus 44 IAgdDTilvi~~~~~~a~~l~~~l~ 68 (70)
T PF02863_consen 44 IAGDDTILVICRSEEDAEELEEKLK 68 (70)
T ss_dssp EEESSEEEEEESTTSHHHHHHHHHH
T ss_pred EeCCCEEEEEeCCHHHHHHHHHHHH
Confidence 3457899999999998888877765
No 220
>PLN02801 beta-amylase
Probab=22.50 E-value=1.4e+02 Score=26.69 Aligned_cols=51 Identities=24% Similarity=0.344 Sum_probs=29.7
Q ss_pred ccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccc
Q 030104 101 AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAG 169 (183)
Q Consensus 101 ~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~G 169 (183)
.|.+=..+|||+. + |..+..+.+..|.+.+++|.|.. ... +|++++.++.|
T Consensus 100 GGNVGD~~~IpLP-----------~---WV~~~g~~~pDi~ftDr~G~rn~----EyLSlg~D~~pvl~G 151 (517)
T PLN02801 100 GGNVGDAVNIPIP-----------Q---WVRDVGDSDPDIFYTNRSGNRNK----EYLSIGVDNLPLFHG 151 (517)
T ss_pred CCCCCCcccccCC-----------H---HHHHhhccCCCceeecCCCCcCc----ceeeeccCcccccCC
Confidence 4566678889884 3 33333345555666666777653 222 56666666654
No 221
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=22.42 E-value=1.9e+02 Score=23.48 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=28.9
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHH--cCCCCee
Q 030104 125 KFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL--NGFAGIT 165 (183)
Q Consensus 125 ~~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~--~G~~~v~ 165 (183)
+.++.+...+....+++|.-.+|..|...+.... +| +||.
T Consensus 5 ~Kl~~l~~~ik~~~kv~vAfSGGvDSslLa~la~~~lG-~~v~ 46 (269)
T COG1606 5 SKLERLKKAIKEKKKVVVAFSGGVDSSLLAKLAKEALG-DNVV 46 (269)
T ss_pred HHHHHHHHHHhhcCeEEEEecCCccHHHHHHHHHHHhc-cceE
Confidence 4555666666555588888888999888887775 88 6764
No 222
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=22.23 E-value=1.5e+02 Score=25.55 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=27.0
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHHH--c----C--CCCeeEccccHHHhh
Q 030104 134 FRKHDEIIVGCQSGKRSMMAATDLL--N----G--FAGITDIAGGFAAWR 175 (183)
Q Consensus 134 l~~~~~ivv~c~~g~~s~~a~~~L~--~----G--~~~v~~l~GG~~~W~ 175 (183)
.+.+-.-+++|++|..+..+|-.|. . | -.++..+.||+.+|.
T Consensus 99 ~p~~~~~v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t 148 (428)
T PRK07986 99 TPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDT 148 (428)
T ss_pred CCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCc
Confidence 4433356888999998776665554 3 3 235667788777654
No 223
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=22.19 E-value=2e+02 Score=22.47 Aligned_cols=41 Identities=20% Similarity=0.076 Sum_probs=26.5
Q ss_pred HHHHHhcCCCCCeEEEEcCC-chHHHHHHHHHH--cCCCCeeEc
Q 030104 127 VEEVSTRFRKHDEIIVGCQS-GKRSMMAATDLL--NGFAGITDI 167 (183)
Q Consensus 127 ~~~~~~~l~~~~~ivv~c~~-g~~s~~a~~~L~--~G~~~v~~l 167 (183)
+.....+-..+..||+++++ .......+..|+ .|-+||.+.
T Consensus 25 i~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~d~i~l~ 68 (238)
T KOG2978|consen 25 IAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGEDNILLK 68 (238)
T ss_pred HHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCCCcEEEE
Confidence 33333333455678888764 345667888888 888888754
No 224
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=21.98 E-value=4e+02 Score=20.93 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=20.6
Q ss_pred CCeEEEEcCCchHHHHHHHHHH--cCCC
Q 030104 137 HDEIIVGCQSGKRSMMAATDLL--NGFA 162 (183)
Q Consensus 137 ~~~ivv~c~~g~~s~~a~~~L~--~G~~ 162 (183)
.+..+++|....++...+..|. .|++
T Consensus 147 ~~~~v~vagDD~~Ak~~v~~L~~~iG~~ 174 (211)
T COG2085 147 GRRDVLVAGDDAEAKAVVAELAEDIGFR 174 (211)
T ss_pred CceeEEEecCcHHHHHHHHHHHHhcCcc
Confidence 4788999999888886666665 8986
No 225
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.91 E-value=1.1e+02 Score=26.73 Aligned_cols=28 Identities=14% Similarity=0.462 Sum_probs=21.2
Q ss_pred EEEEcCCch---HHHHHHHHHH-cCCCCeeEc
Q 030104 140 IIVGCQSGK---RSMMAATDLL-NGFAGITDI 167 (183)
Q Consensus 140 ivv~c~~g~---~s~~a~~~L~-~G~~~v~~l 167 (183)
|.|+|..|+ ....++++|. .||..+.+|
T Consensus 269 V~Ilcgpgnnggdg~v~gRHL~~~G~~~vi~~ 300 (453)
T KOG2585|consen 269 VAILCGPGNNGGDGLVCGRHLAQHGYTPVIYY 300 (453)
T ss_pred EEEEeCCCCccchhHHHHHHHHHcCceeEEEe
Confidence 899998776 3446899999 999765443
No 226
>PRK07481 hypothetical protein; Provisional
Probab=21.86 E-value=1.6e+02 Score=25.64 Aligned_cols=39 Identities=15% Similarity=0.144 Sum_probs=27.0
Q ss_pred CeEEEEcCCchHHHHHHHHHH--c----C---CCCeeEccccHHHhhh
Q 030104 138 DEIIVGCQSGKRSMMAATDLL--N----G---FAGITDIAGGFAAWRQ 176 (183)
Q Consensus 138 ~~ivv~c~~g~~s~~a~~~L~--~----G---~~~v~~l~GG~~~W~~ 176 (183)
-.-+++|++|..+..+|..|. . | =.++..+.||+.+|..
T Consensus 104 ~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ 151 (449)
T PRK07481 104 MRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHF 151 (449)
T ss_pred CCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcch
Confidence 346888999998776666654 2 3 2356778898888754
No 227
>PRK06541 hypothetical protein; Provisional
Probab=21.85 E-value=1.7e+02 Score=25.55 Aligned_cols=42 Identities=12% Similarity=0.000 Sum_probs=27.2
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHHH--c----C---CCCeeEccccHHHhh
Q 030104 134 FRKHDEIIVGCQSGKRSMMAATDLL--N----G---FAGITDIAGGFAAWR 175 (183)
Q Consensus 134 l~~~~~ivv~c~~g~~s~~a~~~L~--~----G---~~~v~~l~GG~~~W~ 175 (183)
.+.+-.-+++|++|..+..+|-.|. . | =.++..+.||+.+|.
T Consensus 108 ~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t 158 (460)
T PRK06541 108 APGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTT 158 (460)
T ss_pred CCCCcCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcc
Confidence 3333345788999998777666654 3 2 234667788887775
No 228
>PRK09694 helicase Cas3; Provisional
Probab=21.61 E-value=2e+02 Score=27.64 Aligned_cols=49 Identities=10% Similarity=0.087 Sum_probs=36.7
Q ss_pred HHHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHH-cCC--CCeeEccccHH
Q 030104 124 LKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGF--AGITDIAGGFA 172 (183)
Q Consensus 124 ~~~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~--~~v~~l~GG~~ 172 (183)
...+..+...+..+.+++|+|++-.++..++..|+ .+. .++..+.+.+.
T Consensus 547 ~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~ 598 (878)
T PRK09694 547 LTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFT 598 (878)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCC
Confidence 34455555556677899999999999999999999 652 25778888753
No 229
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=21.54 E-value=1.3e+02 Score=26.58 Aligned_cols=33 Identities=15% Similarity=0.094 Sum_probs=27.1
Q ss_pred CCCeEEEEcC---CchHHHHHHHHHH-cCCCCeeEcc
Q 030104 136 KHDEIIVGCQ---SGKRSMMAATDLL-NGFAGITDIA 168 (183)
Q Consensus 136 ~~~~ivv~c~---~g~~s~~a~~~L~-~G~~~v~~l~ 168 (183)
++++|+++++ +|..+..+++.|+ .|.+.|++..
T Consensus 347 ~gk~VlLVDDsittGtTl~~~~~~L~~aGA~eV~v~~ 383 (475)
T PRK07631 347 EGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRI 383 (475)
T ss_pred CCceEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEE
Confidence 4688999987 5778888999999 9998887643
No 230
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=21.47 E-value=1.9e+02 Score=24.91 Aligned_cols=37 Identities=16% Similarity=0.332 Sum_probs=27.2
Q ss_pred eEEEEcCCchHHHHHHHHHH---cCCCCeeEccccHHHhh
Q 030104 139 EIIVGCQSGKRSMMAATDLL---NGFAGITDIAGGFAAWR 175 (183)
Q Consensus 139 ~ivv~c~~g~~s~~a~~~L~---~G~~~v~~l~GG~~~W~ 175 (183)
.-+++|++|..+..+|-.|. -|-.+|..+.|++.+|.
T Consensus 102 ~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 141 (425)
T PRK07495 102 KKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRT 141 (425)
T ss_pred CEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCcc
Confidence 35789999998887776665 35556767788887774
No 231
>PRK07482 hypothetical protein; Provisional
Probab=21.47 E-value=1.8e+02 Score=25.36 Aligned_cols=47 Identities=15% Similarity=0.052 Sum_probs=28.6
Q ss_pred HHHhcCCCCCeEEEEcCCchHHHHHHHHHH--c----CC---CCeeEccccHHHhh
Q 030104 129 EVSTRFRKHDEIIVGCQSGKRSMMAATDLL--N----GF---AGITDIAGGFAAWR 175 (183)
Q Consensus 129 ~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~--~----G~---~~v~~l~GG~~~W~ 175 (183)
.+.+..+.+-.-++||++|..+..+|-.+. . |. ++|..+.||+.+|.
T Consensus 102 ~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t 157 (461)
T PRK07482 102 RIIDRAPAGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSG 157 (461)
T ss_pred HHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCcc
Confidence 333334433345788999987776555554 2 54 24666778888874
No 232
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=21.38 E-value=1.4e+02 Score=26.19 Aligned_cols=32 Identities=9% Similarity=0.032 Sum_probs=26.4
Q ss_pred CCCeEEEEcC---CchHHHHHHHHHH-cCCCCeeEc
Q 030104 136 KHDEIIVGCQ---SGKRSMMAATDLL-NGFAGITDI 167 (183)
Q Consensus 136 ~~~~ivv~c~---~g~~s~~a~~~L~-~G~~~v~~l 167 (183)
++++|+++++ +|.....+++.|+ .|.+.|.+.
T Consensus 333 ~gk~VlLVDD~IttGtTl~~~~~~L~~aGAk~V~~~ 368 (442)
T PRK08341 333 NGKRVVLVDDSIVRGTTMKRIVKMLRDAGAREVHVR 368 (442)
T ss_pred CCCEEEEEeeeeccHHHHHHHHHHHHhcCCcEEEEE
Confidence 5688999987 5788889999999 999877653
No 233
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=21.30 E-value=1.4e+02 Score=25.38 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHH-cCCC
Q 030104 136 KHDEIIVGCQSGKRSMMAATDLL-NGFA 162 (183)
Q Consensus 136 ~~~~ivv~c~~g~~s~~a~~~L~-~G~~ 162 (183)
.+.++++...+|..|..+++.+. .|++
T Consensus 171 ~~~kvlvllSGGiDS~vaa~ll~krG~~ 198 (371)
T TIGR00342 171 TQGKVLALLSGGIDSPVAAFMMMKRGCR 198 (371)
T ss_pred cCCeEEEEecCCchHHHHHHHHHHcCCe
Confidence 56678888888888888888888 8873
No 234
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=21.26 E-value=1.1e+02 Score=20.01 Aligned_cols=34 Identities=15% Similarity=0.065 Sum_probs=21.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHH
Q 030104 136 KHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFA 172 (183)
Q Consensus 136 ~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~ 172 (183)
.+.+|++.- ..........|. .+.++++++ ||..
T Consensus 49 ~~~PIll~~--~~l~~~~~~~l~~~~~~~v~ii-Gg~~ 83 (92)
T PF04122_consen 49 NNAPILLVN--NSLPSSVKAFLKSLNIKKVYII-GGEG 83 (92)
T ss_pred cCCeEEEEC--CCCCHHHHHHHHHcCCCEEEEE-CCCC
Confidence 345555554 333356777788 888888776 6643
No 235
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=21.23 E-value=1.8e+02 Score=24.96 Aligned_cols=37 Identities=16% Similarity=0.280 Sum_probs=25.7
Q ss_pred eEEEEcCCchHHHHHHHHHH---cCCCCeeEccccHHHhh
Q 030104 139 EIIVGCQSGKRSMMAATDLL---NGFAGITDIAGGFAAWR 175 (183)
Q Consensus 139 ~ivv~c~~g~~s~~a~~~L~---~G~~~v~~l~GG~~~W~ 175 (183)
.-+++|++|..+..+|..+. -|-+.|..+.||+.+|.
T Consensus 102 ~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 141 (421)
T PRK06777 102 AKTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRT 141 (421)
T ss_pred ceEEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCcc
Confidence 35667789998887776665 35456767788877764
No 236
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=21.20 E-value=2.2e+02 Score=18.20 Aligned_cols=30 Identities=17% Similarity=0.153 Sum_probs=20.5
Q ss_pred CeEEEEcCCch----HHHHHHHHHH-cCCCCeeEcc
Q 030104 138 DEIIVGCQSGK----RSMMAATDLL-NGFAGITDIA 168 (183)
Q Consensus 138 ~~ivv~c~~g~----~s~~a~~~L~-~G~~~v~~l~ 168 (183)
+.+|+++.+-. +-...+..|. .|| .|+.+|
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~-~V~~~D 50 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGY-AVFAYD 50 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCC-EEEEEC
Confidence 56788876533 4446888888 999 566544
No 237
>PRK05965 hypothetical protein; Provisional
Probab=21.19 E-value=1.7e+02 Score=25.44 Aligned_cols=48 Identities=10% Similarity=0.136 Sum_probs=29.6
Q ss_pred HHHHhcCCCCCeEEEEcCCchHHHHHHHHHH--c----CC---CCeeEccccHHHhh
Q 030104 128 EEVSTRFRKHDEIIVGCQSGKRSMMAATDLL--N----GF---AGITDIAGGFAAWR 175 (183)
Q Consensus 128 ~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~--~----G~---~~v~~l~GG~~~W~ 175 (183)
+.+.+..+.+-.-+++|++|..+..+|-.+. . |. ++|..+.||+.+|.
T Consensus 97 e~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t 153 (459)
T PRK05965 97 AKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSS 153 (459)
T ss_pred HHHHhhCCCCcCEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCccc
Confidence 3333334444456888999988776555553 3 42 34667788888774
No 238
>PRK07036 hypothetical protein; Provisional
Probab=21.12 E-value=1.6e+02 Score=25.71 Aligned_cols=42 Identities=10% Similarity=0.042 Sum_probs=27.2
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHHH--c----CC---CCeeEccccHHHhh
Q 030104 134 FRKHDEIIVGCQSGKRSMMAATDLL--N----GF---AGITDIAGGFAAWR 175 (183)
Q Consensus 134 l~~~~~ivv~c~~g~~s~~a~~~L~--~----G~---~~v~~l~GG~~~W~ 175 (183)
.+.+-.-|++|++|..+..+|-.|. . |. +.|..+.|++.+|.
T Consensus 108 ~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t 158 (466)
T PRK07036 108 APGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGST 158 (466)
T ss_pred CCCCcCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCcc
Confidence 4443456888999987776655554 2 42 35667788887774
No 239
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=21.00 E-value=1.4e+02 Score=19.87 Aligned_cols=20 Identities=15% Similarity=0.233 Sum_probs=11.1
Q ss_pred CeEEEEcCCchHHHHHHHHHH-cCC
Q 030104 138 DEIIVGCQSGKRSMMAATDLL-NGF 161 (183)
Q Consensus 138 ~~ivv~c~~g~~s~~a~~~L~-~G~ 161 (183)
.+|++++.... ....+. .|+
T Consensus 22 ~~vvvid~d~~----~~~~~~~~~~ 42 (116)
T PF02254_consen 22 IDVVVIDRDPE----RVEELREEGV 42 (116)
T ss_dssp SEEEEEESSHH----HHHHHHHTTS
T ss_pred CEEEEEECCcH----HHHHHHhccc
Confidence 36777766533 244555 664
No 240
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=20.88 E-value=2.1e+02 Score=17.39 Aligned_cols=38 Identities=8% Similarity=-0.061 Sum_probs=28.6
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHH-cCCC
Q 030104 125 KFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFA 162 (183)
Q Consensus 125 ~~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~ 162 (183)
-.+...+..++.+..+.|..+.......+..++. .||.
T Consensus 15 l~~~~~l~~l~~G~~l~v~~d~~~~~~di~~~~~~~g~~ 53 (70)
T PF01206_consen 15 LKAKKALKELPPGEVLEVLVDDPAAVEDIPRWCEENGYE 53 (70)
T ss_dssp HHHHHHHHTSGTT-EEEEEESSTTHHHHHHHHHHHHTEE
T ss_pred HHHHHHHHhcCCCCEEEEEECCccHHHHHHHHHHHCCCE
Confidence 3456667778888888888887776677888888 9994
No 241
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=20.84 E-value=1.5e+02 Score=23.30 Aligned_cols=30 Identities=17% Similarity=0.131 Sum_probs=25.2
Q ss_pred CeEEEEcC---CchHHHHHHHHHH-cCCCCeeEc
Q 030104 138 DEIIVGCQ---SGKRSMMAATDLL-NGFAGITDI 167 (183)
Q Consensus 138 ~~ivv~c~---~g~~s~~a~~~L~-~G~~~v~~l 167 (183)
++|+++++ +|.....+++.|+ .|..+|.++
T Consensus 185 ~~vlLvDDV~TTGaTl~~~~~~L~~~Ga~~v~~~ 218 (225)
T COG1040 185 KNVLLVDDVYTTGATLKEAAKLLREAGAKRVFVL 218 (225)
T ss_pred CeEEEEecccccHHHHHHHHHHHHHcCCceEEEE
Confidence 56888876 7888889999999 999888764
No 242
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=20.77 E-value=1.5e+02 Score=24.62 Aligned_cols=30 Identities=20% Similarity=0.118 Sum_probs=24.3
Q ss_pred CCCeEEEEc---CCchHHHHHHHHHH-cCCCCee
Q 030104 136 KHDEIIVGC---QSGKRSMMAATDLL-NGFAGIT 165 (183)
Q Consensus 136 ~~~~ivv~c---~~g~~s~~a~~~L~-~G~~~v~ 165 (183)
+++++++++ ++|..-..+++.|+ .|.+.|+
T Consensus 216 ~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~ 249 (320)
T PRK02269 216 KGKKCILIDDMIDTAGTICHAADALAEAGATEVY 249 (320)
T ss_pred CCCEEEEEeeecCcHHHHHHHHHHHHHCCCCEEE
Confidence 456788875 47888889999999 9998876
No 243
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=20.70 E-value=1.5e+02 Score=26.44 Aligned_cols=32 Identities=19% Similarity=0.128 Sum_probs=26.6
Q ss_pred CCCeEEEEcC---CchHHHHHHHHHH-cCCCCeeEc
Q 030104 136 KHDEIIVGCQ---SGKRSMMAATDLL-NGFAGITDI 167 (183)
Q Consensus 136 ~~~~ivv~c~---~g~~s~~a~~~L~-~G~~~v~~l 167 (183)
++++|+++++ +|.....+++.|+ .|.+.|++.
T Consensus 376 ~gkrVlLVDDvIttGtTl~~~~~~Lr~aGAkeV~~~ 411 (500)
T PRK07349 376 AGKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMR 411 (500)
T ss_pred CCCEEEEEeceeCCcHHHHHHHHHHHHhCCeEEEEE
Confidence 5789999987 5888889999999 998877653
No 244
>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]
Probab=20.54 E-value=2.1e+02 Score=24.15 Aligned_cols=42 Identities=10% Similarity=0.128 Sum_probs=29.8
Q ss_pred HHhcCCCCCeEEEEcCCchHHHHHHHHHH---cCCCCeeEccccHH
Q 030104 130 VSTRFRKHDEIIVGCQSGKRSMMAATDLL---NGFAGITDIAGGFA 172 (183)
Q Consensus 130 ~~~~l~~~~~ivv~c~~g~~s~~a~~~L~---~G~~~v~~l~GG~~ 172 (183)
+...++. -.++++|++|..+-..+.+|. .+.++|..|+--+.
T Consensus 95 l~stlPe-Lsvc~F~NSGSEANDLALRLAR~ftkhqDvItldHAYH 139 (452)
T KOG1403|consen 95 LTSTLPE-LSVCFFVNSGSEANDLALRLARNFTKHQDVITLDHAYH 139 (452)
T ss_pred HhhcCCC-ceEEEEecCCchhhHHHHHHHHhhcccCceEEEechhc
Confidence 3344543 779999999998887777776 57777777765443
No 245
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=20.45 E-value=1.7e+02 Score=28.17 Aligned_cols=39 Identities=15% Similarity=0.130 Sum_probs=32.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHHHh
Q 030104 135 RKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAW 174 (183)
Q Consensus 135 ~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W 174 (183)
.++.||+|.|.+-..|..++..|. .|+. ..+|.+.....
T Consensus 442 ~~g~PVLVgt~Sie~sE~ls~~L~~~gi~-h~vLnak~~q~ 481 (896)
T PRK13104 442 VRKQPVLVGTVSIEASEFLSQLLKKENIK-HQVLNAKFHEK 481 (896)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHcCCC-eEeecCCCChH
Confidence 678999999999999999999999 9995 56677765543
No 246
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=20.31 E-value=4e+02 Score=22.25 Aligned_cols=78 Identities=17% Similarity=0.289 Sum_probs=44.8
Q ss_pred CCCcccCHHHHHHHHhC-C---CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcC
Q 030104 70 GVPTSVPVRVAHELLQA-G---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ 145 (183)
Q Consensus 70 ~~~~~i~~~~~~~~~~~-~---~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~ 145 (183)
.....||...+.+++.. | .+-+|... ..|.|-.++|.+ ++...+.+.++.......+..|||-=+
T Consensus 103 ~~repIsaklvA~lL~~aG~drv~TvDlH~------~qiqgfFdipvd-----nl~a~p~l~~~~~~~~~~~d~vVVSPD 171 (314)
T COG0462 103 KPREPISAKLVANLLETAGADRVLTVDLHA------PQIQGFFDIPVD-----NLYAAPLLAEYIREKYDLDDPVVVSPD 171 (314)
T ss_pred CCCCCEeHHHHHHHHHHcCCCeEEEEcCCc------hhhcccCCCccc-----cccchHHHHHHHHHhcCCCCcEEECCC
Confidence 34457889999888874 3 66789876 456677777774 233333444444443333334444434
Q ss_pred Cch--HHHHHHHHHH
Q 030104 146 SGK--RSMMAATDLL 158 (183)
Q Consensus 146 ~g~--~s~~a~~~L~ 158 (183)
.|. |+..++..|.
T Consensus 172 ~Ggv~RAr~~A~~L~ 186 (314)
T COG0462 172 KGGVKRARALADRLG 186 (314)
T ss_pred ccHHHHHHHHHHHhC
Confidence 443 5666665554
No 247
>PRK07678 aminotransferase; Validated
Probab=20.15 E-value=1.6e+02 Score=25.65 Aligned_cols=37 Identities=14% Similarity=0.045 Sum_probs=25.3
Q ss_pred eEEEEcCCchHHHHHHHHHH--c----C---CCCeeEccccHHHhh
Q 030104 139 EIIVGCQSGKRSMMAATDLL--N----G---FAGITDIAGGFAAWR 175 (183)
Q Consensus 139 ~ivv~c~~g~~s~~a~~~L~--~----G---~~~v~~l~GG~~~W~ 175 (183)
.-+++|++|..+..+|-.+. . | =+.|..+.||+.+|.
T Consensus 106 ~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t 151 (451)
T PRK07678 106 YVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNS 151 (451)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcc
Confidence 36789999998776665554 2 3 234667788888775
Done!