Query 030105
Match_columns 183
No_of_seqs 121 out of 615
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 13:43:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030105.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030105hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbn_U Ribosomal protein S21; 100.0 2.6E-59 9E-64 388.8 -7.0 175 3-183 9-190 (190)
2 3i1m_U 30S ribosomal protein S 99.8 1.9E-23 6.3E-28 150.6 -6.8 62 89-150 1-62 (71)
3 3r8n_U 30S ribosomal protein S 99.8 1.8E-21 6.3E-26 132.4 -3.7 50 92-141 1-50 (51)
4 1pch_A Phosphocarrier protein; 34.2 27 0.00092 24.7 2.7 29 88-117 58-86 (88)
5 1b9p_A Protein (collagen alpha 33.7 28 0.00094 21.8 2.3 13 104-116 10-22 (34)
6 1ka5_A Phosphocarrier protein 28.7 62 0.0021 22.6 3.8 28 88-116 59-86 (88)
7 2een_A Hypothetical protein PH 28.4 12 0.00042 28.6 0.0 38 89-127 135-172 (183)
8 1q9u_A Uncharacterized protein 26.4 54 0.0019 23.6 3.3 28 89-116 4-31 (130)
9 2jvf_A De novo protein M7; tet 24.2 79 0.0027 23.2 3.7 29 88-116 19-47 (96)
10 2rc8_A Glutamate [NMDA] recept 22.6 85 0.0029 24.5 3.9 41 92-132 254-294 (294)
11 3n10_A Adenylate cyclase 2; CY 20.0 54 0.0019 24.8 2.2 39 88-126 135-173 (179)
No 1
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=2.6e-59 Score=388.82 Aligned_cols=175 Identities=61% Similarity=0.940 Sum_probs=52.8
Q ss_pred CCcccccccccCCCCCC-CCCCCCC--CCCccccCC---CCCCCCccccccCCCCCCCCCCCCCCCCcccchhhhhccch
Q 030105 3 TPLSNFFSFILPSNALP-KNSTPLA--QPNHLSLSS---QQKPKNASFSKVAPAQPQESHDSSSASSSSTELASVICPSL 76 (183)
Q Consensus 3 ~~~~~f~sf~~p~~~~~-~~~~~~~--~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~sv~~p~l 76 (183)
+||+||||||||+|||+ ++++|.. .|+++++++ |+++++ +....... ..++++++|+|+++++|+||++
T Consensus 9 ~s~~~f~sf~~~sk~~~~~~~~p~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~s~~~~~~~~P~~ 83 (190)
T 3bbn_U 9 ASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSR-DGSVALNP----QQGPNHSEPLSAELASVICPSL 83 (190)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHhccCCCCCCCCCCCcccCCCccccccCcchhhccCc-ccceeccc----cccCCcccccchhhHhhhCchh
Confidence 68999999999999996 3332211 266776554 667755 33333222 4789999999999999999999
Q ss_pred hhhhhhcccCccceEEEecCCCcHHHHHHHHHHHHHhhhhHHHHhhhcccCCchHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 030105 77 AYANTLFFKSAYNVQVVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRRRSQFRGPVQ 156 (183)
Q Consensus 77 a~sn~l~fk~~~mv~V~V~enE~iE~ALRRFKRkv~keGIL~E~KrRRyYEKPSeKRKRK~~eA~rR~rKrr~~~r~~~~ 156 (183)
+|+|+++|+|.||++|.|+|||+||+|||||||+|+++|||+|||+|+|||||+++||||.++|+||++||+.+.+++++
T Consensus 84 ~~an~~~~kg~~M~~V~VkeNE~iE~ALRRFKRkveKeGIlrElRrRr~YEKPSeKRKRK~~eA~rR~rKrR~~~~~~~~ 163 (190)
T 3bbn_U 84 AYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQ 163 (190)
T ss_dssp -------------CCCCCCCCSSCCCCCCSSSTTTTTTHHHHSSSSCCCTTTTTTHHHHHHHHTTC--------------
T ss_pred hhcchhhccCCcccEEEecCCCCHHHHHHHHHHHHHHccHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCCCCCCCCCCCCCCCCCC-CCC
Q 030105 157 NRQEATPTKKDDDDEDNWELPEGD-IPY 183 (183)
Q Consensus 157 ~k~e~~~~~~~ddd~DnWelp~~d-~p~ 183 (183)
++++. +.+++||||||||||+|| |||
T Consensus 164 ~~~~~-~~~~~de~dDnWe~p~~~~~p~ 190 (190)
T 3bbn_U 164 NKQDV-PATKQEADDDNWDLPEDEDIPS 190 (190)
T ss_dssp ----------------------------
T ss_pred ccccc-ccccccccccCcCCCCcCcCCC
Confidence 98874 778999999999999998 997
No 2
>3i1m_U 30S ribosomal protein S21; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_U* 2avy_U 2aw7_U 2vho_U 2vhp_U 3df1_U* 3df3_U* 3e1a_Q 3e1c_Q 1vs5_U 3i1o_U 3i1q_U 3i1s_U 3i1z_U 3i21_U 3izv_Y* 3izw_Y* 3kc4_U 3or9_U 3ora_U ...
Probab=99.83 E-value=1.9e-23 Score=150.56 Aligned_cols=62 Identities=37% Similarity=0.614 Sum_probs=50.8
Q ss_pred ceEEEecCCCcHHHHHHHHHHHHHhhhhHHHHhhhcccCCchHHHHHHHHHHHHHHHHhhhc
Q 030105 89 NVQVVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRRRSQ 150 (183)
Q Consensus 89 mv~V~V~enE~iE~ALRRFKRkv~keGIL~E~KrRRyYEKPSeKRKRK~~eA~rR~rKrr~~ 150 (183)
|++|.|+|||+||.|||+|||+|+++|||+|+|+|+||||||++|+||..+|++|.+|+..+
T Consensus 1 M~~V~V~enE~ie~ALRrfKR~~~k~Gil~e~Rrr~~yEKPs~kRkrk~~~a~kR~~k~~~~ 62 (71)
T 3i1m_U 1 MPVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLAR 62 (71)
T ss_dssp ---CEEECCSSCCSCCCTTTTSSSTHHHHTTSSSCCCSSSHHHHHHHHHHTSCC--------
T ss_pred CCeeEeCCCCCHHHHHHHHHHHHHHccHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999998886544
No 3
>3r8n_U 30S ribosomal protein S21; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_U 3fih_U* 3j18_U* 2wwl_U 3oar_U 3oaq_U 3ofb_U 3ofa_U 3ofp_U 3ofx_U 3ofy_U 3ofo_U 3r8o_U 4a2i_U 4gd1_U 4gd2_U
Probab=99.78 E-value=1.8e-21 Score=132.39 Aligned_cols=50 Identities=42% Similarity=0.702 Sum_probs=47.9
Q ss_pred EEecCCCcHHHHHHHHHHHHHhhhhHHHHhhhcccCCchHHHHHHHHHHH
Q 030105 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAA 141 (183)
Q Consensus 92 V~V~enE~iE~ALRRFKRkv~keGIL~E~KrRRyYEKPSeKRKRK~~eA~ 141 (183)
|.|+|||+||.|||+|||+|+++|||+|+|+|+||||||++|+||..+|.
T Consensus 1 v~V~enE~ie~AlrrfkR~~~k~Gi~~e~r~r~~yeKPs~krkrk~~~a~ 50 (51)
T 3r8n_U 1 IKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAV 50 (51)
T ss_dssp CEECCCSSCCCCCCTTGGGSSTTHHHHHHHSCCCCSSHHHHHHHHHHHTT
T ss_pred CcCCCCCCHHHHHHHHHHHHHHcchHHHHHHHHhhcCHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999999999999988764
No 4
>1pch_A Phosphocarrier protein; phosphotransferase; 1.80A {Mycoplasma capricolum} SCOP: d.94.1.1
Probab=34.20 E-value=27 Score=24.68 Aligned_cols=29 Identities=3% Similarity=0.333 Sum_probs=23.6
Q ss_pred cceEEEecCCCcHHHHHHHHHHHHHhhhhH
Q 030105 88 YNVQVVVDENEPEERLLNRFRREVMRAGVI 117 (183)
Q Consensus 88 ~mv~V~V~enE~iE~ALRRFKRkv~keGIL 117 (183)
..++|.+ +|++.|.|+..+...+...|+.
T Consensus 58 ~~i~i~a-~G~De~~Al~~l~~l~~~~~~~ 86 (88)
T 1pch_A 58 TEITIQA-DGNDADQAIQAIKQTMIDTALI 86 (88)
T ss_dssp CEEEEEE-ESTTHHHHHHHHHHHHHHTTSS
T ss_pred CEEEEEE-eCCCHHHHHHHHHHHHHhCCcc
Confidence 4566666 7888999999999999888764
No 5
>1b9p_A Protein (collagen alpha 1); collagen facit XIV, heparin-binding site; NMR {Synthetic} SCOP: j.49.1.1 PDB: 1b9q_A
Probab=33.66 E-value=28 Score=21.75 Aligned_cols=13 Identities=31% Similarity=0.871 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhhh
Q 030105 104 LNRFRREVMRAGV 116 (183)
Q Consensus 104 LRRFKRkv~keGI 116 (183)
++||+|+..++||
T Consensus 10 ~~RF~R~~A~~~I 22 (34)
T 1b9p_A 10 ISRFRRKIAKRSI 22 (34)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6899999999999
No 6
>1ka5_A Phosphocarrier protein HPR; open faced beta-sandwich, structural proteomics in europe, spine, structural genomics, ligand transport; NMR {Staphylococcus aureus} SCOP: d.94.1.1 PDB: 1qr5_A 1txe_A
Probab=28.74 E-value=62 Score=22.61 Aligned_cols=28 Identities=7% Similarity=0.261 Sum_probs=21.4
Q ss_pred cceEEEecCCCcHHHHHHHHHHHHHhhhh
Q 030105 88 YNVQVVVDENEPEERLLNRFRREVMRAGV 116 (183)
Q Consensus 88 ~mv~V~V~enE~iE~ALRRFKRkv~keGI 116 (183)
..++|.+ +|++.+.|+..+...+..+|+
T Consensus 59 ~~i~i~a-~G~De~~A~~~l~~l~~~~~~ 86 (88)
T 1ka5_A 59 AEITIYA-DGSDESDAIQAISDVLSKEGL 86 (88)
T ss_dssp CEEEEEE-ESSSHHHHHHHHHHHHHHHTS
T ss_pred CEEEEEE-eCCCHHHHHHHHHHHHHHcCC
Confidence 3455555 788899999999988876664
No 7
>2een_A Hypothetical protein PH1819; dimer, NPPSFA, national project on Pro structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=28.35 E-value=12 Score=28.60 Aligned_cols=38 Identities=18% Similarity=0.477 Sum_probs=31.3
Q ss_pred ceEEEecCCCcHHHHHHHHHHHHHhhhhHHHHhhhcccC
Q 030105 89 NVQVVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFE 127 (183)
Q Consensus 89 mv~V~V~enE~iE~ALRRFKRkv~keGIL~E~KrRRyYE 127 (183)
-+.+.+.+++.++.+...|...+.+-|| .++-.+-|.|
T Consensus 135 EiE~e~~~~~~~~~~~~~~~~l~~~lgi-~~~~~~sY~e 172 (183)
T 2een_A 135 EIETLVKEKDEIPEAVEKLEKILRELGV-EKFERRSYLE 172 (183)
T ss_dssp EEEEECSSGGGHHHHHHHHHHHHHHHTC-CCBCCSCHHH
T ss_pred EEEEecCCcccHHHHHHHHHHHHHHcCC-CCceeccHHH
Confidence 5777888888999999999999999999 6666665553
No 8
>1q9u_A Uncharacterized protein APC35924; structural genomics, Zn-binding proteins, PSI, protein structure initiative; HET: CSW CME; 1.80A {Geobacillus stearothermophilus} SCOP: d.129.7.1
Probab=26.42 E-value=54 Score=23.64 Aligned_cols=28 Identities=14% Similarity=0.256 Sum_probs=22.6
Q ss_pred ceEEEecCCCcHHHHHHHHHHHHHhhhh
Q 030105 89 NVQVVVDENEPEERLLNRFRREVMRAGV 116 (183)
Q Consensus 89 mv~V~V~enE~iE~ALRRFKRkv~keGI 116 (183)
|..+.+.-+-++|.++.+++..+...|+
T Consensus 4 m~~~~~~s~~s~~e~~~~l~~al~~~Gf 31 (130)
T 1q9u_A 4 MFHYTVDVSTGMNETIERLEESLKQEGF 31 (130)
T ss_dssp CSEEEEECSSCHHHHHHHHHHHHHHTTC
T ss_pred cEEEEEEcCCCHHHHHHHHHHHHHHCCC
Confidence 4455555577899999999999999884
No 9
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=24.24 E-value=79 Score=23.22 Aligned_cols=29 Identities=24% Similarity=0.456 Sum_probs=25.5
Q ss_pred cceEEEecCCCcHHHHHHHHHHHHHhhhh
Q 030105 88 YNVQVVVDENEPEERLLNRFRREVMRAGV 116 (183)
Q Consensus 88 ~mv~V~V~enE~iE~ALRRFKRkv~keGI 116 (183)
.-+.|.|--|..+|+||..+-+.+.++|-
T Consensus 19 ieidirvstgkeleralqelekalaraga 47 (96)
T 2jvf_A 19 IEIDIRVSTGKELERALQELEKALARAGA 47 (96)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEEcccHHHHHHHHHHHHHHHhccc
Confidence 45778888999999999999999999983
No 10
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=22.64 E-value=85 Score=24.52 Aligned_cols=41 Identities=7% Similarity=0.115 Sum_probs=26.6
Q ss_pred EEecCCCcHHHHHHHHHHHHHhhhhHHHHhhhcccCCchHH
Q 030105 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDE 132 (183)
Q Consensus 92 V~V~enE~iE~ALRRFKRkv~keGIL~E~KrRRyYEKPSeK 132 (183)
|-++.|..+-.+|.+.=.++..+|.++++.+|.+-..||.|
T Consensus 254 ia~~k~~~l~~~in~al~~l~~~G~~~~l~~kw~~~~~c~~ 294 (294)
T 2rc8_A 254 IGLPPNSPLTSNISELISQYKSHGFMDVLHDKWYKVVPCGK 294 (294)
T ss_dssp CEECTTCTHHHHHHHHHHHHHHTTHHHHHHHHHCCC-----
T ss_pred EEecCCCHHHHHHHHHHHHHHhCCCHHHHHHhhcCCCCCCC
Confidence 45666665655566666666789999999999887777653
No 11
>3n10_A Adenylate cyclase 2; CYTH domain, antiparallel barrel, product complex, cyclic AM; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0z_A* 3n0y_A* 2fjt_A
Probab=20.02 E-value=54 Score=24.82 Aligned_cols=39 Identities=13% Similarity=0.222 Sum_probs=30.3
Q ss_pred cceEEEecCCCcHHHHHHHHHHHHHhhhhHHHHhhhccc
Q 030105 88 YNVQVVVDENEPEERLLNRFRREVMRAGVIQECKRRRFF 126 (183)
Q Consensus 88 ~mv~V~V~enE~iE~ALRRFKRkv~keGIL~E~KrRRyY 126 (183)
+-+.|.+.+++.++.|...+...+.+-||-.+-.-++.|
T Consensus 135 ~EiE~e~~~~~~~~~~~~~~~~l~~~LGl~~~~~~~~sY 173 (179)
T 3n10_A 135 AEIAIMTDDATELDKLKAECRDFANTFGLQVDQQEPRSY 173 (179)
T ss_dssp EEEEEEESCGGGHHHHHHHHHHHHHHHTCCGGGBCCSCH
T ss_pred EEEEEEeCCCccHHHHHHHHHHHHHHcCcChhhcceecH
Confidence 357788888889999999999999999996554434433
Done!