BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030109
(183 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O82531|PSB1_PETHY Proteasome subunit beta type-1 OS=Petunia hybrida GN=PBF1 PE=2 SV=1
Length = 223
Score = 334 bits (857), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 157/171 (91%), Positives = 165/171 (96%)
Query: 13 ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYS 72
ADKCVMASSGFQADV+ALQK+LA+RHLIYQHQHNKQMSCP M QLLSNTLYYKRFFPYYS
Sbjct: 53 ADKCVMASSGFQADVRALQKVLASRHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYS 112
Query: 73 FNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDA 132
FNVLGGLD+EGKGCV+TYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDA
Sbjct: 113 FNVLGGLDSEGKGCVFTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDA 172
Query: 133 VTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 183
VTPLSEAEA+DLVKTCFASATERDIYTGD+LEIV+LN GI RE MELRKD
Sbjct: 173 VTPLSEAEAIDLVKTCFASATERDIYTGDRLEIVILNASGIRREEMELRKD 223
>sp|P42742|PSB1_ARATH Proteasome subunit beta type-1 OS=Arabidopsis thaliana GN=PBF1 PE=1
SV=2
Length = 223
Score = 306 bits (785), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 144/171 (84%), Positives = 157/171 (91%)
Query: 13 ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYS 72
AD+ V++SSGFQADVKALQK+L +RHLIYQHQHNKQMSCP MAQLLSNTLY+KRFFPYY+
Sbjct: 53 ADRAVLSSSGFQADVKALQKVLKSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYA 112
Query: 73 FNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDA 132
FNVLGGLD EGKGCV+TYDAVGSYERVGY +QGSGSTLIMPFLDNQLKSPSPLLLP QD+
Sbjct: 113 FNVLGGLDEEGKGCVFTYDAVGSYERVGYGAQGSGSTLIMPFLDNQLKSPSPLLLPKQDS 172
Query: 133 VTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 183
TPLSEAEAVDLVKT FASATERDIYTGDKLEI++L GI E M+LRKD
Sbjct: 173 NTPLSEAEAVDLVKTVFASATERDIYTGDKLEIMILKADGIKTELMDLRKD 223
>sp|O64464|PSB1_ORYSJ Proteasome subunit beta type-1 OS=Oryza sativa subsp. japonica
GN=PBF1 PE=2 SV=1
Length = 221
Score = 306 bits (783), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 143/171 (83%), Positives = 156/171 (91%)
Query: 13 ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYS 72
ADKC +ASSGFQ D+KAL K LAAR L+YQHQHNK+MSCP MAQLLSNTLYYKRFFPYY+
Sbjct: 51 ADKCALASSGFQGDIKALHKNLAARELLYQHQHNKRMSCPAMAQLLSNTLYYKRFFPYYA 110
Query: 73 FNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDA 132
FNVLGGLD+EGKGCV+TYDAVGSYER GYS+QG+GS LIMP LDNQLKSPSPLLLPA+DA
Sbjct: 111 FNVLGGLDSEGKGCVFTYDAVGSYERTGYSAQGTGSALIMPVLDNQLKSPSPLLLPARDA 170
Query: 133 VTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 183
VTPLSE EAVDLVK FASATERDIYTGDKLEIVV+NK G REY++LRKD
Sbjct: 171 VTPLSETEAVDLVKDVFASATERDIYTGDKLEIVVINKAGTKREYIDLRKD 221
>sp|Q86A21|PSB1_DICDI Proteasome subunit beta type-1 OS=Dictyostelium discoideum GN=psmB1
PE=3 SV=1
Length = 236
Score = 183 bits (465), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 89/169 (52%), Positives = 118/169 (69%), Gaps = 3/169 (1%)
Query: 15 KCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFN 74
KCV+A+SG QAD ALQK L + ++ +H K MS P +AQ LSNTLYYKRFFPYY+FN
Sbjct: 71 KCVLATSGMQADTIALQKRLKSMLESFEKEHGKPMSTPAIAQFLSNTLYYKRFFPYYTFN 130
Query: 75 VLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVT 134
++ G+D +G+G ++TYDAVGS+ERV YSSQGSG+ L++P LDNQ+ + ++ V
Sbjct: 131 LVAGVDEQGEGWIWTYDAVGSHERVKYSSQGSGNQLVIPLLDNQVAKFNQQIVEGNKDV- 189
Query: 135 PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 183
S + V VK SA ERDIYTGD +IVV++K G+H E EL+ D
Sbjct: 190 --SCEQVVSFVKDSITSAGERDIYTGDFADIVVVDKNGVHWEKFELKLD 236
>sp|Q9IB84|PSB1A_CARAU Proteasome subunit beta type-1-A OS=Carassius auratus GN=psmb1-A
PE=2 SV=1
Length = 238
Score = 162 bits (410), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/170 (47%), Positives = 111/170 (65%), Gaps = 4/170 (2%)
Query: 14 DKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSF 73
D V+ SGF D L K++ AR +Y+H +NK M+ +A +LS LY +RFFPYY +
Sbjct: 73 DTTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVY 132
Query: 74 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAV 133
N++GGLD EG+G VY++D VGSY+R Y + GS S ++ P LDNQ+ + + + V
Sbjct: 133 NIIGGLDEEGRGAVYSFDPVGSYQRDTYKAGGSASAMLQPLLDNQIGFKN---MENVEQV 189
Query: 134 TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 183
PLS+ +AV LVK F SA ERD+YTGD L+I ++ K GI E + LRKD
Sbjct: 190 -PLSQEKAVQLVKDVFISAAERDVYTGDALKICIITKEGIREEIVPLRKD 238
>sp|Q9IB83|PSB1B_CARAU Proteasome subunit beta type-1-B OS=Carassius auratus GN=psmb1-B
PE=2 SV=1
Length = 237
Score = 162 bits (409), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/170 (47%), Positives = 111/170 (65%), Gaps = 4/170 (2%)
Query: 14 DKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSF 73
D V+ SGF D L K++ AR +Y+H +NK M+ +A +LS LY +RFFPYY +
Sbjct: 72 DTTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVY 131
Query: 74 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAV 133
N++GGLD EG+G VY++D VGSY+R Y + GS S ++ P LDNQ+ + + + V
Sbjct: 132 NIIGGLDEEGRGAVYSFDPVGSYQRDTYKAGGSASAMLQPLLDNQIGFKN---MENVEQV 188
Query: 134 TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 183
PLS+ +AV LVK F SA ERD+YTGD L+I ++ K GI E + LRKD
Sbjct: 189 -PLSQEKAVQLVKDVFISAAERDVYTGDALKICIITKEGIREEIVPLRKD 237
>sp|P20618|PSB1_HUMAN Proteasome subunit beta type-1 OS=Homo sapiens GN=PSMB1 PE=1 SV=2
Length = 241
Score = 159 bits (403), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 80/171 (46%), Positives = 108/171 (63%), Gaps = 6/171 (3%)
Query: 14 DKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSF 73
DK V+ SGF D L K++ AR +Y+H +NK M+ +A +LS LY +RFFPYY +
Sbjct: 76 DKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVY 135
Query: 74 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAV 133
N++GGLD EGKG VY++D VGSY+R + + GS S ++ P LDNQ+ + Q+
Sbjct: 136 NIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKN-----MQNVE 190
Query: 134 -TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 183
PLS A+ LVK F SA ERD+YTGD L I ++ K GI E + LRKD
Sbjct: 191 HVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVSLRKD 241
>sp|O09061|PSB1_MOUSE Proteasome subunit beta type-1 OS=Mus musculus GN=Psmb1 PE=1 SV=1
Length = 240
Score = 158 bits (400), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/171 (46%), Positives = 108/171 (63%), Gaps = 6/171 (3%)
Query: 14 DKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSF 73
DK V+ SGF D L K++ AR +Y+H +NK M+ +A +LS LY +RFFPYY +
Sbjct: 75 DKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVY 134
Query: 74 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAV 133
N++GGLD EGKG VY++D VGSY+R + + GS S ++ P LDNQ+ + Q+
Sbjct: 135 NIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKN-----MQNVE 189
Query: 134 -TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 183
PL+ A+ LVK F SA ERD+YTGD L I ++ K GI E + LRKD
Sbjct: 190 HVPLTLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVPLRKD 240
>sp|Q2TBX6|PSB1_BOVIN Proteasome subunit beta type-1 OS=Bos taurus GN=PSMB1 PE=1 SV=1
Length = 241
Score = 158 bits (399), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/171 (46%), Positives = 109/171 (63%), Gaps = 6/171 (3%)
Query: 14 DKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSF 73
DK V+ SGF D L K++ AR +Y+H +NK M+ +A +LS LY +RFFPYY +
Sbjct: 76 DKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVY 135
Query: 74 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAV 133
N++GGLD EGKG VY++D VGSY+R + + GS S ++ P LDNQ+ + Q+
Sbjct: 136 NIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKN-----MQNVE 190
Query: 134 -TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 183
PLS A+ LVK F SA ERD+YTGD L++ ++ K GI E + LRKD
Sbjct: 191 HVPLSLDRAMRLVKDVFISAAERDVYTGDALKVCIVTKEGIRGETVPLRKD 241
>sp|P18421|PSB1_RAT Proteasome subunit beta type-1 OS=Rattus norvegicus GN=Psmb1 PE=1
SV=3
Length = 240
Score = 155 bits (392), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/171 (45%), Positives = 107/171 (62%), Gaps = 6/171 (3%)
Query: 14 DKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSF 73
DK V+ SGF D L K++ AR +Y+H +NK M+ +A +LS LY +RFFPYY +
Sbjct: 75 DKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVY 134
Query: 74 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAV 133
N++ GLD EGKG VY++D VGSY+R + + GS S ++ P LDNQ+ + Q+
Sbjct: 135 NIIEGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKN-----MQNVE 189
Query: 134 -TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 183
PL+ A+ LVK F SA ERD+YTGD L I ++ K GI E + LRKD
Sbjct: 190 HVPLTLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVPLRKD 240
>sp|P23724|PSB6_YEAST Proteasome subunit beta type-6 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRE7 PE=1 SV=1
Length = 241
Score = 137 bits (345), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 103/176 (58%), Gaps = 5/176 (2%)
Query: 13 ADKCVMASSGFQADVKALQKLLAARHLIYQHQHN-KQMSCPGMAQLLSNTLYYKRFFPYY 71
D VM+++GF AD AL K Y HN K++S A+ + + LY KRFFPYY
Sbjct: 66 GDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYY 125
Query: 72 SFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQD 131
++ GLD +GKG VY++D VGSYER + G+ ++LIMPFLDNQ+ +
Sbjct: 126 VHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNG 185
Query: 132 AVTP----LSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 183
V LS E + LV+ F SATER I GD LEI+++ K G+ +E+ EL++D
Sbjct: 186 KVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRKEFYELKRD 241
>sp|P40304|PSB1_DROME Proteasome subunit beta type-1 OS=Drosophila melanogaster GN=Pros26
PE=2 SV=2
Length = 235
Score = 136 bits (343), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 15 KCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFN 74
+ V+ S+G AD +L + R Y+H H + M+ +AQ+LS +Y +RFFPYY N
Sbjct: 69 QTVLGSAGCWADTLSLTGSIKVRMQSYEHTHLRTMTTEAVAQMLSIAMYNRRFFPYYVSN 128
Query: 75 VLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVT 134
+L G+DNEGKG VY+YD +G E+ Y + G+ TL+ P LDNQ+ + + L D +
Sbjct: 129 ILAGIDNEGKGVVYSYDPIGHCEKATYRAGGTAGTLLQPVLDNQIGHKN-MNLEDADKI- 186
Query: 135 PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 183
L++ AV + F SA ERDIYTGD + I ++ K GI + LR+D
Sbjct: 187 KLTKERAVSVASDTFISAAERDIYTGDSVLINIITKDGIEVRTLTLRQD 235
>sp|P34286|PSB1_CAEEL Proteasome subunit beta type-1 OS=Caenorhabditis elegans GN=pbs-6
PE=1 SV=2
Length = 258
Score = 128 bits (321), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 102/171 (59%), Gaps = 4/171 (2%)
Query: 14 DKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSF 73
D ++ +SGF DV L+K+L +R Y+ + MS A+LLS LYY+RFFPYY+
Sbjct: 91 DNIILTTSGFYGDVLQLKKVLQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTG 150
Query: 74 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAV 133
+L G+D GKG V++YD +G ER+GYS+ G+ +I+PFLD Q+ + L
Sbjct: 151 AILAGIDEHGKGAVFSYDPIGCIERLGYSASGAAEPMIIPFLDCQI---GHVTLSEGYER 207
Query: 134 TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGG-IHREYMELRKD 183
L+ A+ L+K F A ER+I TGDK+ +V+ G + +++ LR+D
Sbjct: 208 PELTLDRAISLMKDSFRGAAEREISTGDKIHLVIAEAGKPVVVKFLPLRED 258
>sp|Q9U794|PSB1_TRYBB Proteasome subunit beta type-1 OS=Trypanosoma brucei brucei PE=2
SV=1
Length = 258
Score = 124 bits (311), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 100/176 (56%), Gaps = 13/176 (7%)
Query: 13 ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQM-SCPGMAQLLSNTLYYKRFFPYY 71
D+ +ASSG QAD LQ++L R YQ+ + ++ S +A+L S LY +RFFPYY
Sbjct: 91 TDRIFLASSGMQADRLQLQQMLKYRIQWYQYNNGGKVPSTKAIAKLTSTMLYQRRFFPYY 150
Query: 72 SFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQD 131
+FN++ G+D +G G Y+YD VGS E Y + GS S+ + P LD LL Q
Sbjct: 151 TFNMIVGIDEKGAGVCYSYDPVGSTEPFRYGTCGSASSFVEPLLD--------CLLTRQH 202
Query: 132 AVT----PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 183
VT L+ EA+ ++K F A ERDI+TGD + ++ G+ E ELRKD
Sbjct: 203 MVTQAPADLTMEEALGMLKNAFTGAAERDIFTGDTVCFHIITADGVGTEMFELRKD 258
>sp|Q9UQY2|PSB6_SCHPO Probable proteasome subunit beta type-6 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pam1 PE=3 SV=1
Length = 225
Score = 120 bits (301), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 94/183 (51%), Gaps = 20/183 (10%)
Query: 13 ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYS 72
D V+ +SGF+AD AL K + R +Y H ++MS A ++ LY KRFFPYY
Sbjct: 51 GDDLVIGASGFEADALALVKRIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYV 110
Query: 73 FNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQL------------K 120
+ + G+D EGKG +Y++D VGSYER + GS + I PFLDNQ+ K
Sbjct: 111 YTTVAGIDKEGKGEIYSFDPVGSYEREWCRAGGSAANFITPFLDNQVNLHNQYVPGSHGK 170
Query: 121 SPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMEL 180
P L L EA+ + F SA ER I GD + + ++ K G+ + L
Sbjct: 171 ERKPRRL--------LKLEEAMKITTDAFTSAGERHIEVGDSVLVKIITKEGVETRIIPL 222
Query: 181 RKD 183
+KD
Sbjct: 223 KKD 225
>sp|Q8SRH6|PSB6_ENCCU Probable proteasome subunit beta type-6 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=PRE7 PE=1 SV=1
Length = 290
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 94/167 (56%), Gaps = 7/167 (4%)
Query: 17 VMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVL 76
++ +GF AD + + + I Q++ + ++ A LLS LY KRFFPYYSF VL
Sbjct: 131 LLTGTGFYADTHEVYVKMV--YEIRQYEVDDSINIHSAANLLSKILYSKRFFPYYSFCVL 188
Query: 77 GGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPL 136
G + +GK VY+YD +GS+ V GSG ++I P LD+ + + A++ T L
Sbjct: 189 SGFE-KGKPYVYSYDPIGSFGSVTCVCSGSGRSMIQPLLDSFIDKKN--WNNAEE--TQL 243
Query: 137 SEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 183
S+ + + LV F SA ERD+ T D LE+ V+ + + RE LR+D
Sbjct: 244 SQEDCIRLVVKAFNSAAERDVKTKDNLEVCVMRENQVMRETFPLRRD 290
>sp|A1RX71|PSB2_THEPD Proteasome subunit beta 2 OS=Thermofilum pendens (strain Hrk 5)
GN=psmB2 PE=3 SV=1
Length = 204
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 84/159 (52%), Gaps = 14/159 (8%)
Query: 14 DKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSF 73
DK MAS+G AD++ L +++ A +Y+ N +A+LLS LY +R FPYY+
Sbjct: 44 DKMGMASAGLMADMQTLARIVEAEMRLYELDSNISPKVWTVAKLLSYILYERRLFPYYAE 103
Query: 74 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAV 133
V+GGLD EG +Y+ D +G+ Y + GSG+ L + +++ K
Sbjct: 104 IVVGGLDEEGS-HLYSLDPIGAIIEDDYVALGSGTQLAISIVESNYKK------------ 150
Query: 134 TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGG 172
+S EA+ L +A +RD +GD ++++V+ K G
Sbjct: 151 -DMSLDEALSLALKSVYAAMKRDAASGDGVDVLVIGKSG 188
>sp|B1YDJ0|PSB2_PYRNV Proteasome subunit beta 2 OS=Pyrobaculum neutrophilum (strain DSM
2338 / JCM 9278 / V24Sta) GN=psmB2 PE=3 SV=1
Length = 203
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 93/183 (50%), Gaps = 20/183 (10%)
Query: 5 FYILTSCRA------DKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLL 58
FY L++ DK +AS+G AD++AL K+L Y+ + K+ + MA+LL
Sbjct: 32 FYTLSTAGKKVFIVNDKLAIASAGIIADMQALAKILKLNARSYELEVKKKPTVKAMAKLL 91
Query: 59 SNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQ 118
S ++ +RF P+Y+ ++GG+D EG + D +GS Y++ G+G+ L + LD
Sbjct: 92 SVVMFSRRFMPFYAEVLVGGVDEEGPHLI-VMDPLGSLIEDNYAALGTGAKLAVSLLDAS 150
Query: 119 LKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYM 178
+ ++ EA L +A ERD +G +++VV++ GG E +
Sbjct: 151 YRP-------------DMTVEEAKKLAVQAVKAAIERDPVSGGGIDLVVVDGGGAREEEV 197
Query: 179 ELR 181
+++
Sbjct: 198 KVQ 200
>sp|Q5JHL8|PSB2_PYRKO Proteasome subunit beta 2 OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=psmB2 PE=3 SV=1
Length = 199
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 86/170 (50%), Gaps = 16/170 (9%)
Query: 14 DKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSF 73
D+ + ++G DV+AL ++L A YQ + M+ MA LLSN L ++FPY
Sbjct: 45 DRIAITTAGSVGDVQALARMLEAEARYYQFTWGRPMTAKAMAHLLSNILNENKWFPYMVQ 104
Query: 74 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAV 133
++GG E + D +G Y++ GSGS + L++ +
Sbjct: 105 IIIGGYVEE--PTLANLDPLGGLIFDDYTATGSGSPFAIAVLEDGFRK------------ 150
Query: 134 TPLSEAEAVDLVKTCFASATERDIYTGD-KLEIVVLNKGGIHREYMELRK 182
+S EA +L +A +RD+YTGD K+++VV++K G+ E++E ++
Sbjct: 151 -DMSLEEAKELAVRAVRTAGKRDVYTGDRKVQVVVISKDGMKEEFVEFKE 199
>sp|A3MXQ6|PSB2_PYRCJ Proteasome subunit beta 2 OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=psmB2 PE=3 SV=1
Length = 203
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 88/168 (52%), Gaps = 14/168 (8%)
Query: 14 DKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSF 73
D+ +AS+G AD++ L K+L Y+ + ++ S MA+LLS ++ +RF P+++
Sbjct: 47 DRLAIASAGIIADMQTLAKILKLNAKAYELEMKRKPSVHAMAKLLSVVMFSRRFMPFFAE 106
Query: 74 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAV 133
++GG+D+EG + D +GS Y++ G+G+ L + +D K L QDA
Sbjct: 107 VLVGGIDDEGPHLI-VMDPLGSLIEDNYAALGTGAKLAIAIIDASYKPDMSL----QDAK 161
Query: 134 TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELR 181
L +A ERD +G +++VV++K G E ++L+
Sbjct: 162 K---------LAVQALKAALERDPVSGGGIDLVVIDKNGAREEEVKLQ 200
>sp|C5A2D5|PSB2_THEGJ Proteasome subunit beta 2 OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=psmB2 PE=3 SV=1
Length = 200
Score = 80.5 bits (197), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 89/170 (52%), Gaps = 16/170 (9%)
Query: 14 DKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSF 73
D+ + ++G DV+AL ++L A+ YQ + M+ MA LLSN L ++FPY
Sbjct: 46 DRIAITTAGSVGDVQALARMLEAQARYYQFTWGRPMTTRAMANLLSNILNENKWFPYMVQ 105
Query: 74 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAV 133
++GG + K + + DA+G Y++ GSGS + +++ +
Sbjct: 106 IIIGGYVD--KPELASVDALGGLVFEKYTATGSGSPFAIAIIEDGYRE------------ 151
Query: 134 TPLSEAEAVDLVKTCFASATERDIYTGD-KLEIVVLNKGGIHREYMELRK 182
+S EA +L +A +RD+YTG+ K+++VV+ K G+ E++E ++
Sbjct: 152 -DMSIEEAKELAVRAVKTAGKRDVYTGERKVQVVVITKDGMKEEFVEFKE 200
>sp|Q46G14|PSB_METBF Proteasome subunit beta OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=psmB PE=3 SV=1
Length = 211
Score = 80.1 bits (196), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 90/180 (50%), Gaps = 19/180 (10%)
Query: 1 MGSFFYILTSCRA----DKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQ 56
MG+F T+ + D M ++G D + L +L+ +Y+ + N+ M+ G+A
Sbjct: 31 MGNFIASKTAKKVYQIDDLVAMTTAGSVGDAQQLVRLVNVESQLYKMRRNESMTIKGIAT 90
Query: 57 LLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV-GSYERVGYSSQGSGSTLIMPFL 115
L+SN L R++P ++GG+D G G +Y+ DA+ GS E S+ GSGS + L
Sbjct: 91 LMSNFLNSNRYYPMMVQLLIGGVDKNGPG-IYSLDALGGSIEETRISATGSGSPMAYGVL 149
Query: 116 DNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHR 175
++Q + ++ E +DL +AT+RD +G+ +++VV+ K R
Sbjct: 150 EDQYRE-------------DMTVKEGLDLAIRAIHNATKRDSASGENIDVVVITKEAFRR 196
>sp|B6YXV3|PSB2_THEON Proteasome subunit beta 2 OS=Thermococcus onnurineus (strain NA1)
GN=psmB2 PE=3 SV=1
Length = 200
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 14 DKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSF 73
D+ + ++G DV+AL ++L A YQ K MS MA LLSN L ++FPY
Sbjct: 46 DRIAITTAGSVGDVQALARMLEAEARYYQFTWGKPMSTKAMANLLSNILNGNKWFPYLVQ 105
Query: 74 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAV 133
+LGG E + D +G Y++ GSGS + L++ K
Sbjct: 106 IILGGYVEE--PTLANLDPLGGLIFDDYTATGSGSPFAIAVLEDGYKK------------ 151
Query: 134 TPLSEAEAVDLVKTCFASATERDIYTGD-KLEIVVLNKGGIHREYMEL 180
+S EA +L +A +RD+YTG K++IV + K GI E++E
Sbjct: 152 -DMSIEEAKELAVRAVRTAGKRDVYTGSRKIQIVAITKEGITEEFVEF 198
>sp|A2BN27|PSB2_HYPBU Proteasome subunit beta 2 OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=psmB2 PE=3 SV=1
Length = 212
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 16/170 (9%)
Query: 14 DKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSF 73
D M ++G AD + L + LA Y+ + ++MS AQ LS L+ +F+PY
Sbjct: 54 DYMAMTTAGLVADAQMLAEWLANHTHYYEIVNKRRMSIHAAAQYLSIILHSAKFYPYIVQ 113
Query: 74 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAV 133
+LGG D + + +Y D GS Y + GSGS + +++Q SP+
Sbjct: 114 LLLGGYDTQPR--LYNIDWFGSVTEEKYVATGSGSPTAIGVIEDQY-SPN---------- 160
Query: 134 TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 183
LS EAV+L K AS+ RD +TG+ +++VV+ K +REY KD
Sbjct: 161 --LSMEEAVELAKRAVASSIRRDTFTGNGVDVVVIGK-DFYREYSFELKD 207
>sp|Q8ZST5|PSB2_PYRAE Proteasome subunit beta 2 OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=psmB2 PE=3 SV=1
Length = 203
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 90/183 (49%), Gaps = 20/183 (10%)
Query: 5 FYILTSCRA------DKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLL 58
FY L+S DK +AS+G AD++ L K+L Y+ + ++ S MA+LL
Sbjct: 32 FYTLSSAGKKVFVIDDKLAIASAGIIADMQTLAKILKLNAKAYELEMKRKPSTHSMARLL 91
Query: 59 SNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQ 118
S ++ +RF P+++ ++GG+D EG + D +GS Y++ G+G+ L + LD
Sbjct: 92 SVIMFSRRFMPFFAEVLVGGIDEEGPHLI-VMDPLGSLIEDNYAALGTGAKLAVAVLDTG 150
Query: 119 LKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYM 178
+ ++ EA L +A ERD +G +++ +++K G E +
Sbjct: 151 YRP-------------DITVEEAKKLAVQALKAAIERDPVSGGGIDLAIVDKNGAREEEV 197
Query: 179 ELR 181
++
Sbjct: 198 RVQ 200
>sp|C6A3R1|PSB2_THESM Proteasome subunit beta 2 OS=Thermococcus sibiricus (strain MM 739
/ DSM 12597) GN=psmB2 PE=3 SV=1
Length = 199
Score = 76.6 bits (187), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 85/170 (50%), Gaps = 16/170 (9%)
Query: 14 DKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSF 73
D+ + ++G D++AL ++L A YQ K M+ MA LLSN L ++FPY
Sbjct: 45 DRIAITTAGSVGDLQALARMLEAEAKYYQFTWGKPMTAKAMANLLSNILNESKWFPYMVQ 104
Query: 74 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAV 133
++GG E + + D +G Y++ GSGS + L++ K
Sbjct: 105 IIIGGYVEE--PTLASLDPLGGLIFDNYTTTGSGSPFAIAILEDGYKE------------ 150
Query: 134 TPLSEAEAVDLVKTCFASATERDIYTGD-KLEIVVLNKGGIHREYMELRK 182
+S +A +L +A +RD+YTG+ K++++ + K G+ E++E ++
Sbjct: 151 -DMSIEDARELAIKAVRTAGKRDVYTGERKIQVITITKEGMKEEFVEFKE 199
>sp|A1RSJ8|PSB1_PYRIL Proteasome subunit beta 1 OS=Pyrobaculum islandicum (strain DSM
4184 / JCM 9189) GN=psmB1 PE=3 SV=1
Length = 203
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 90/183 (49%), Gaps = 20/183 (10%)
Query: 5 FYILTSCRA------DKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLL 58
FY L+S DK +AS+G AD++ L ++L + Y+ + K+ + MA+LL
Sbjct: 32 FYTLSSAGKKVFIINDKLAIASAGIIADMQTLARILKLNVMSYELEVRKKPTVRAMAKLL 91
Query: 59 SNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQ 118
S ++ +R P+Y+ ++GG+D EG + D +GS Y++ G+G+ L + LD
Sbjct: 92 SIIMFSRRLLPFYAEVLVGGVDEEGPHLI-VMDPLGSLIEDNYAALGTGAKLAVSLLDAT 150
Query: 119 LKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYM 178
+ +S EA L +A ERD +G +++ V++ G E +
Sbjct: 151 YRP-------------DISLQEAKKLAVQAIKAAIERDPVSGGGIDLAVVDNNGAREEEV 197
Query: 179 ELR 181
+++
Sbjct: 198 KIQ 200
>sp|C5A7L1|PSB1_THEGJ Proteasome subunit beta 1 OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=psmB1 PE=3 SV=1
Length = 201
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 16/163 (9%)
Query: 14 DKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSF 73
D +A +G D+ +L +LL A +Y+ + ++MS +A L+SN L+ R PY+++
Sbjct: 49 DHLAIAGAGLVGDILSLVRLLRAEAKLYRAKVGREMSVKALATLVSNVLHGSRHLPYFAW 108
Query: 74 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAV 133
++GG D + + +Y+ DA G + + GSG + L+ L
Sbjct: 109 FLIGGYDVKPR--LYSIDAAGGVTEERFIAAGSGMEFALALLEENFSDGMGL-------- 158
Query: 134 TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHRE 176
E +DL +A RD+YTG+ + +V + K G +RE
Sbjct: 159 -----DEGIDLAVRAVKAAIRRDVYTGEGVTVVAITKEG-YRE 195
>sp|Q8TJB5|PSB_METAC Proteasome subunit beta OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=psmB PE=3 SV=1
Length = 210
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 94/191 (49%), Gaps = 22/191 (11%)
Query: 1 MGSFFYILTSCRA----DKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQ 56
MG F T+ + D M ++G D + L +L++ +Y+ + N+ M+ G+A
Sbjct: 31 MGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRNESMTIKGIAT 90
Query: 57 LLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV-GSYERVGYSSQGSGSTLIMPFL 115
L+SN L R++P ++GG+D G +Y+ DA+ GS E S+ GSGS + L
Sbjct: 91 LMSNFLNANRYYPMMVQLLIGGVDKNGP-AIYSLDAMGGSIEETRISATGSGSPMAYGVL 149
Query: 116 DNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHR 175
++Q K ++ E +DL +A +RD +G+ +++VV+ K R
Sbjct: 150 EDQYKE-------------DIAVKEGLDLAIRAIHNAMKRDSASGENIDVVVITKEAFKR 196
Query: 176 ---EYMELRKD 183
E ++ R+D
Sbjct: 197 LDPEEVKSRRD 207
>sp|A0RU86|PSB1_CENSY Proteasome subunit beta 1 OS=Cenarchaeum symbiosum (strain A)
GN=psmB1 PE=3 SV=1
Length = 193
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 82/154 (53%), Gaps = 15/154 (9%)
Query: 19 ASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGG 78
A +G AD++ L ++A I + + + +A+++SN +Y +RFFP + ++GG
Sbjct: 47 ACAGLVADMQILSLQISALAKIRKMDLKRDIPPNSVAKMMSNMMYERRFFPLLTQVIVGG 106
Query: 79 LDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSE 138
+ G+ +YT D++GS Y++ G+G+ + + LD Q KS +SE
Sbjct: 107 V--VGEPAIYTLDSLGSVLPDEYAAVGTGAEMALGVLDPQFKS-------------GMSE 151
Query: 139 AEAVDLVKTCFASATERDIYTGDKLEIVVLNKGG 172
+AVDL SA RD ++GD L+I+ L+ G
Sbjct: 152 KDAVDLAVRGIRSAALRDSFSGDGLDILALDANG 185
>sp|Q9P992|PSB_METTE Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3
SV=1
Length = 210
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 89/180 (49%), Gaps = 19/180 (10%)
Query: 1 MGSFFYILTSCRA----DKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQ 56
MG F T+ + D M ++G D + L +L++ +Y+ + ++ M+ G+
Sbjct: 31 MGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRDESMTIKGITT 90
Query: 57 LLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV-GSYERVGYSSQGSGSTLIMPFL 115
L+SN L R++P ++GG+D G G +Y+ DA+ GS E S+ GSGS + L
Sbjct: 91 LMSNFLSRNRYYPMMVQLLIGGVDKNGPG-IYSLDAMGGSIEETRISATGSGSPMAYGVL 149
Query: 116 DNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHR 175
++Q + ++ E +DL +AT+RD +G+ +++VV+ K R
Sbjct: 150 EDQYRE-------------NMTVKEGLDLAIRAIHNATKRDSASGENIDVVVITKEAFKR 196
>sp|C6A2V9|PSB1_THESM Proteasome subunit beta 1 OS=Thermococcus sibiricus (strain MM 739
/ DSM 12597) GN=psmB1 PE=3 SV=1
Length = 207
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 19/170 (11%)
Query: 14 DKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSF 73
D +A +G D+ +L + L A +Y+ + K+MS +A L SN L +++ PY+ +
Sbjct: 48 DHLALAGAGAVGDILSLVRALRAESKLYRAKVGKEMSTKALATLTSNILSGRKYLPYFGW 107
Query: 74 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAV 133
++GG D K +Y+ D G Y S GSG LDN+ L
Sbjct: 108 FLIGGYDE--KPSLYSIDMAGGITEDKYVSAGSGMEFAYSILDNEYSEKITL-------- 157
Query: 134 TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 183
V L +A +RD++TGD + +V +++ G Y EL K+
Sbjct: 158 -----NNGVKLAIKAINAAIKRDVFTGDGIMVVTIDREG----YRELSKE 198
>sp|O50110|PSB2_PYRHO Proteasome subunit beta 2 OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=psmB2 PE=3 SV=1
Length = 207
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 19/176 (10%)
Query: 1 MGSFFYILTSCRADKC----VMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQ 56
+G+ Y + K +A +G D+ L +LL A +Y Q K+MS +A
Sbjct: 32 LGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYSQSGKRMSVKALAT 91
Query: 57 LLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLD 116
LL+N + ++FPY ++ ++GG D + K +Y+ D VG Y++ GSG LD
Sbjct: 92 LLANIMNGAKYFPYLAWFLVGGYDEKPK--LYSVDMVGGITEDKYATAGSGMEFAYSILD 149
Query: 117 NQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGG 172
++ K L+ E + L +A +RD+++GD + +V + K G
Sbjct: 150 SEYKD-------------NLTLEEGIKLAVKAINTAIKRDVFSGDGILVVTITKEG 192
>sp|Q4JAY3|PSB1_SULAC Proteasome subunit beta 1 OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=psmB1 PE=3 SV=1
Length = 195
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 84/163 (51%), Gaps = 14/163 (8%)
Query: 18 MASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLG 77
+A +G D++ L +++ Y+ +++++S A+LLS LY + PY S + G
Sbjct: 47 IAGAGIVGDIQTLTRIMNVEIKYYEMYNSRKISARAAAKLLSVILYQNKVLPYISELLFG 106
Query: 78 GLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLS 137
G+D +G ++ D +GS Y++ GSG+ + + L+ + L+
Sbjct: 107 GVDEDGP-KLFILDPIGSLIEDSYAAVGSGARVAIGVLEAEYNE-------------SLT 152
Query: 138 EAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMEL 180
A +L SA ERD+ +GD ++I+++NK I+ +++++
Sbjct: 153 SEAAKELAIKSMKSAVERDVMSGDGIDILIINKNNIYEDFIKI 195
>sp|Q5JDJ9|PSB1_PYRKO Proteasome subunit beta 1 OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=psmB1 PE=3 SV=1
Length = 203
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 16/166 (9%)
Query: 14 DKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSF 73
D +A +G D+ +L +LL A +Y+ + +++MS +A L SN L+ R F Y ++
Sbjct: 46 DHLAIAGAGTVGDILSLVRLLRAEAKLYRAKVSREMSVKALATLTSNILHSGRGFAYMAW 105
Query: 74 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAV 133
++GG D+ + +Y+ DA G +++ GSG L+ + PL
Sbjct: 106 FLVGGYDSAPR--LYSIDAAGGVTEDRFTAAGSGMEFAFSVLEENYRDGIPL-------- 155
Query: 134 TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYME 179
E V L +AT+RD++TG + +V + + G +RE+ E
Sbjct: 156 -----EEGVKLALRAIKAATKRDVFTGGGVTLVTITEEG-YREWSE 195
>sp|Q9YER0|PSB2_AERPE Proteasome subunit beta 2 OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=psmB2 PE=3
SV=2
Length = 219
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 22/180 (12%)
Query: 6 YILTSCRADKCVMAS-------SGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLL 58
+++ S R K VM S SG AD + L +L +Y+ + + S +A LL
Sbjct: 49 FLIASRRVKKIVMLSNYVAMTVSGLVADAQILSDVLREEIRLYEMTNKVKPSVRFVASLL 108
Query: 59 SNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQ 118
SN L+ +FFPY ++GG D + + +YT D GS Y++ GSGS + L+ +
Sbjct: 109 SNILFSSKFFPYIVQLIVGGYDTQPR--LYTLDLFGSITEDKYTATGSGSPIAYGVLEER 166
Query: 119 LKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYM 178
+ LS EA+ + T SA RD +GD ++VV+ G +++
Sbjct: 167 YRE-------------DLSVEEAIKVATTAIRSAVLRDAASGDGADVVVIGPQGYEEKFI 213
>sp|Q8PZ04|PSB_METMA Proteasome subunit beta OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=psmB PE=3 SV=1
Length = 210
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 88/180 (48%), Gaps = 19/180 (10%)
Query: 1 MGSFFYILTSCRA----DKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQ 56
MG F T+ + D M ++G D + L +L++ +Y+ + N+ M+ G+A
Sbjct: 31 MGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRNESMTIKGIAT 90
Query: 57 LLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV-GSYERVGYSSQGSGSTLIMPFL 115
L+SN L R++P ++GG+D G +Y+ D + GS E S+ GSGS + L
Sbjct: 91 LMSNFLNANRYYPMMVQLLIGGVDKNGP-AIYSLDPMGGSIEETRISATGSGSPMAYGVL 149
Query: 116 DNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHR 175
++Q + ++ E +DL +AT+RD +G+ +++VV+ K R
Sbjct: 150 EDQYRE-------------DIAVKEGLDLAIRAIHNATKRDSASGENIDVVVITKEAFKR 196
>sp|A4WMZ0|PSB2_PYRAR Proteasome subunit beta 2 OS=Pyrobaculum arsenaticum (strain DSM
13514 / JCM 11321) GN=psmB2 PE=3 SV=1
Length = 203
Score = 73.6 bits (179), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 93/183 (50%), Gaps = 20/183 (10%)
Query: 5 FYILTSCRA------DKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLL 58
FY L+S DK +AS+G AD+++L +++ Y+ + K+ + MA+LL
Sbjct: 32 FYTLSSAGRKVFVIDDKLAIASAGIIADMQSLARIVKINAKAYELETRKKPTVRSMAKLL 91
Query: 59 SNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQ 118
S ++ +R+ P+++ ++GG+D EG + D +GS Y++ G+G+ L + LD
Sbjct: 92 SVIMFSRRYMPFFAEVLVGGVDEEGSHLI-VMDPLGSLIEDNYAALGTGAKLAISVLDTG 150
Query: 119 LKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYM 178
+ L QDA L +A ERD +G +++V++++ G E +
Sbjct: 151 YREDITL----QDAKK---------LAVKALKAAIERDPVSGGGIDLVLIDQTGAKEEEV 197
Query: 179 ELR 181
+++
Sbjct: 198 KVQ 200
>sp|B6YSW2|PSB1_THEON Proteasome subunit beta 1 OS=Thermococcus onnurineus (strain NA1)
GN=psmB1 PE=3 SV=1
Length = 203
Score = 73.6 bits (179), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 18/169 (10%)
Query: 14 DKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSF 73
D +A +G D+ +L +LL A +Y+ + +++S +A L SN L+ RF PY+ +
Sbjct: 46 DHLALAGAGSVGDILSLVRLLRAEVKLYRAKVGREISVKALATLTSNILHGSRFMPYFGW 105
Query: 74 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAV 133
++ G D K +Y+ D G +++ GSG L L++ K
Sbjct: 106 FLIAGYDE--KPALYSLDMAGGVTEDKFTAAGSGMELAFAVLEDGYKD------------ 151
Query: 134 TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGG---IHREYME 179
++ E V L AT RD++TGD + +V + + G ++RE +E
Sbjct: 152 -DINVEEGVKLALKAIKIATRRDVFTGDGITLVTVTEEGYRELNREEIE 199
>sp|B8D673|PSB1_DESK1 Proteasome subunit beta 1 OS=Desulfurococcus kamchatkensis (strain
1221n / DSM 18924) GN=psmB1 PE=3 SV=1
Length = 202
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 18/154 (11%)
Query: 21 SGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLD 80
+G DV L K+L Y+ QH +++ +A+LLS LY + P + V+GG D
Sbjct: 53 AGLMGDVNFLVKVLRLEAKNYELQHGREIKTRSLAKLLSVILYSYKLAPMLTEVVVGGYD 112
Query: 81 NEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAE 140
EG +Y D VGS Y + GSG+ L + +++ P + L EAE
Sbjct: 113 EEGP-SLYILDPVGSVIEEKYVAVGSGAQLALGYIE-----------PRYNPGLGLKEAE 160
Query: 141 --AVDLVKTCFASATERDIYTGDKLEIVVLNKGG 172
AV+ VKT ERD+ +GD +++VV++K G
Sbjct: 161 ELAVNAVKTVI----ERDVLSGDGIDLVVIDKNG 190
>sp|Q8U125|PSB2_PYRFU Proteasome subunit beta 2 OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=psmB2 PE=3 SV=1
Length = 206
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 20/181 (11%)
Query: 1 MGSFFYILTSCRADKC----VMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQ 56
+G+ Y + K +A +G D+ L +LL A +Y+ K+MS +A
Sbjct: 32 LGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLKAEANLYKSTVGKEMSVKALAT 91
Query: 57 LLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLD 116
LL+N L ++FPY + ++GG D + + +++ D VG Y++ GSG LD
Sbjct: 92 LLANILNGSKYFPYLGWFLVGGYDEKPR--LFSVDMVGGITEDNYAAAGSGMEFAYSILD 149
Query: 117 NQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHRE 176
++ + +S + + L A +RD++TGD L +V + K G ++E
Sbjct: 150 SEYRE-------------EMSVNDGIKLAVKAINVAIKRDVFTGDGLLVVTITKDG-YKE 195
Query: 177 Y 177
Y
Sbjct: 196 Y 196
>sp|A7I841|PSB_METB6 Proteasome subunit beta OS=Methanoregula boonei (strain 6A8)
GN=psmB PE=3 SV=1
Length = 213
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 84/159 (52%), Gaps = 15/159 (9%)
Query: 13 ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYS 72
AD+ M +G D + L +++ +YQ + +++++ + LLSN L R+FPYY
Sbjct: 49 ADRIGMTIAGGVGDAQQLARIITVECNLYQIRRSREITVGAASTLLSNYLNQNRYFPYYV 108
Query: 73 FNVLGGLDNEGKGCVYTYDAV-GSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQD 131
++GG+D+ G VY+ DA+ G+ + S GSGS + L+++ + P
Sbjct: 109 QLLVGGIDDHGP-SVYSVDAMGGATKEEDIVSTGSGSPMAYGVLEDRYR-------PG-- 158
Query: 132 AVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNK 170
++E EAV+L SA +RD +G+ + +VV+ K
Sbjct: 159 ----MNEDEAVELAVRALRSAMKRDAGSGEGIHVVVITK 193
>sp|A9A4A1|PSB1_NITMS Proteasome subunit beta 1 OS=Nitrosopumilus maritimus (strain SCM1)
GN=psmB1 PE=3 SV=1
Length = 198
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 21 SGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLD 80
+G AD++ L +AA I + + + + +A+++SN +Y +R+FP + ++GG+
Sbjct: 53 AGLVADMQILSLQIAALAKIRKMELKRDVPPNTVAKMMSNMMYERRYFPLLTQVIVGGVV 112
Query: 81 NEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAE 140
+ K +YT D +GS Y++ G+G+ + + LD Q K P+ +++ E
Sbjct: 113 D--KPIMYTLDPLGSVLPDEYAAVGTGAEMALGVLDPQFK-PN------------MTKDE 157
Query: 141 AVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELR 181
A+DL K +A+ RD +GD ++++V+ K G E++
Sbjct: 158 AIDLAKRAVRAASLRDSASGDGVDVLVITKDGTEEFTEEIK 198
>sp|A8AA46|PSB1_IGNH4 Proteasome subunit beta 1 OS=Ignicoccus hospitalis (strain KIN4/I /
DSM 18386 / JCM 14125) GN=psmB1 PE=3 SV=1
Length = 198
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 15/159 (9%)
Query: 14 DKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSF 73
D+ MA +G AD++A+ + L Y+ + ++M A+LL LY + FP +
Sbjct: 44 DRMGMACAGLYADMQAIARALENEIRYYEISNKRKMKVRSAARLLGLILYSNKLFPLMTE 103
Query: 74 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAV 133
V GG D+E + ++ D VGS YS+ G+G+ L M LD + +
Sbjct: 104 TVFGGYDDEPR--IFVLDPVGSVIEEKYSAVGTGAPLAMALLDKEYRE------------ 149
Query: 134 TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGG 172
+S EA +L A+ RD +GD ++++V+ GG
Sbjct: 150 -DMSLEEAQNLAIESVKVASGRDSLSGDGIDVLVIPFGG 187
>sp|D2RGT4|PSB_ARCPA Proteasome subunit beta OS=Archaeoglobus profundus (strain DSM 5631
/ JCM 9629 / NBRC 100127 / Av18) GN=psmB PE=3 SV=1
Length = 215
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 85/173 (49%), Gaps = 21/173 (12%)
Query: 13 ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYS 72
AD+ M ++G D + L +L++ +Y+ + ++ + +A LLSN L R+FPY+
Sbjct: 50 ADRVAMTTAGAVGDAQFLARLISVEIKLYEIRKEEKPTVKAIATLLSNILNSVRWFPYFV 109
Query: 73 FNVLGGLDNEGKGCVYTYDAV-GSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQD 131
++GG+D G +Y+ D + G+ E + + GSGS L +D
Sbjct: 110 QLLVGGVDKRGP-SIYSIDLLGGAIEEIDIVATGSGSPTAYGVL--------------ED 154
Query: 132 AVTP-LSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYMELRKD 183
TP ++ + V+L SA RD +GD +++V + K G Y EL K+
Sbjct: 155 RYTPEITVDDGVELAVRAIYSAMRRDSASGDGIDVVKITKDG----YFELSKE 203
>sp|A2BN24|PSB1_HYPBU Proteasome subunit beta 1 OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=psmB1 PE=3 SV=1
Length = 204
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 80/157 (50%), Gaps = 13/157 (8%)
Query: 14 DKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSF 73
D +A +G AD++A+ K+L A Y +++S +A+LL+ LY +++P+ S
Sbjct: 47 DYLGLALAGLFADLQAISKILRAEIEYYNIVTGRRISVRAVARLLATILYSYKYYPFLSE 106
Query: 74 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAV 133
++GGL+ +G +Y D +GS Y++ GSG+ + + L+N
Sbjct: 107 TLVGGLEADGTAKLYVMDPLGSLIEDDYAAIGSGAPIAIGILENGYSK------------ 154
Query: 134 TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNK 170
+S +A L +A ERD +GD ++++V+ +
Sbjct: 155 -DMSVDDAKKLAIAAVRAAIERDAMSGDGIDLLVIRR 190
>sp|B5IEE5|PSB_ACIB4 Proteasome subunit beta OS=Aciduliprofundum boonei (strain DSM
19572 / T469) GN=psmB PE=3 SV=1
Length = 210
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 18 MASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLG 77
M ++G D++ L + + A +Y+ + M A LLSN L ++FFPYY ++G
Sbjct: 50 MTTAGLVGDLQVLVRYMRAEINLYRIRRKMYMPVGAAATLLSNILNERKFFPYYVGLLVG 109
Query: 78 GLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLS 137
G D++G V+ DA G Y+S GSGS + L+++ K LS
Sbjct: 110 GFDSKGY-HVFAIDAAGGAIEDKYASVGSGSLFVYGVLEDRWKD-------------DLS 155
Query: 138 EAEAVDLVKTCFASATERDIYTGDKLEIVVLNK 170
E ++LV +A RD +GD + + + K
Sbjct: 156 LDEGINLVIRGINAAMRRDAASGDGISVATITK 188
>sp|B8GG66|PSB_METPE Proteasome subunit beta OS=Methanosphaerula palustris (strain ATCC
BAA-1556 / DSM 19958 / E1-9c) GN=psmB PE=3 SV=1
Length = 211
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 15/159 (9%)
Query: 13 ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYS 72
AD+ M ++G D + L ++++ +YQ + + +S + LLSN L R +PYY
Sbjct: 47 ADRIGMTTAGGVGDAQQLARIMSVECNLYQIRRGRSISVGASSTLLSNYLNQNRGYPYYV 106
Query: 73 FNVLGGLDNEGKGCVYTYDAVGSYERVG-YSSQGSGSTLIMPFLDNQLKSPSPLLLPAQD 131
++GG+D G VY+ DA+G R + GSGS + L+++ K
Sbjct: 107 QLLVGGVDATGP-SVYSVDAMGGATRESDIVATGSGSPMAYGVLEDRYKK---------- 155
Query: 132 AVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNK 170
L+E EA++L +A RD +G+ + +V++ K
Sbjct: 156 ---DLTEDEAIELAIRALRAAMRRDSASGEGIHVVIITK 191
>sp|Q9V0N9|PSB2_PYRAB Proteasome subunit beta 2 OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=psmB2 PE=3 SV=1
Length = 207
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 16/159 (10%)
Query: 18 MASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLG 77
+A +G D+ L +LL A +Y Q K+MS +A LL+N L R PY ++ ++G
Sbjct: 53 IAGAGDVGDILNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVG 112
Query: 78 GLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLS 137
G D + + +Y+ D +G Y + GSG LD++ + L
Sbjct: 113 GFDEKPR--LYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYRE-------------DLK 157
Query: 138 EAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHRE 176
E + + SA +RD+++GD + +V + + G +RE
Sbjct: 158 VREGIKIAVEAINSAIKRDVFSGDGIMVVTITEEG-YRE 195
>sp|O57983|PSB1_PYRHO Proteasome subunit beta 1 OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=psmB1 PE=3 SV=1
Length = 197
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 14 DKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSF 73
D+ + ++G DV+ + ++L A Y + M+ MA LLSN L ++FPY
Sbjct: 45 DRIAITTAGSVGDVQMIARILEAEARYYYFAWGRPMTTKAMANLLSNILNENKWFPYLVQ 104
Query: 74 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAV 133
++GG +E + D G Y++ GSG+ + L+ K
Sbjct: 105 IIIGGYVDE--PTIANLDPYGGLIFDNYTATGSGTPFAIAILEEGYKE------------ 150
Query: 134 TPLSEAEAVDLVKTCFASATERDIYTGD-KLEIVVLNKGGIHREYMEL 180
L EA +L +A RD+YTG K+++V + K G+ E+++L
Sbjct: 151 -NLGIEEAKELAIKAIKAAGSRDVYTGSKKVQVVTITKEGMQEEFIKL 197
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,115,267
Number of Sequences: 539616
Number of extensions: 2612493
Number of successful extensions: 6697
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 6419
Number of HSP's gapped (non-prelim): 207
length of query: 183
length of database: 191,569,459
effective HSP length: 110
effective length of query: 73
effective length of database: 132,211,699
effective search space: 9651454027
effective search space used: 9651454027
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)