Query 030109
Match_columns 183
No_of_seqs 111 out of 1049
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 08:39:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030109.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030109hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03757 proteasome_beta_type_1 100.0 2E-44 4.3E-49 287.1 21.5 175 5-183 38-212 (212)
2 cd03759 proteasome_beta_type_3 100.0 2.4E-43 5.1E-48 277.6 21.5 162 5-179 33-195 (195)
3 cd03761 proteasome_beta_type_5 100.0 1.4E-41 3.1E-46 266.0 21.6 158 4-175 29-186 (188)
4 cd03758 proteasome_beta_type_2 100.0 1.8E-41 3.9E-46 266.5 21.1 161 4-177 30-192 (193)
5 cd03760 proteasome_beta_type_4 100.0 1.4E-40 3E-45 262.2 21.6 162 4-176 31-195 (197)
6 KOG0179 20S proteasome, regula 100.0 2.2E-40 4.7E-45 255.3 18.1 179 3-183 57-235 (235)
7 cd03762 proteasome_beta_type_6 100.0 7.8E-40 1.7E-44 255.9 21.6 158 5-176 30-187 (188)
8 TIGR03634 arc_protsome_B prote 100.0 6.2E-40 1.3E-44 255.8 20.9 155 5-173 31-185 (185)
9 cd03764 proteasome_beta_archea 100.0 1.2E-39 2.5E-44 255.0 21.3 157 5-175 30-186 (188)
10 COG0638 PRE1 20S proteasome, a 100.0 4E-39 8.6E-44 260.4 20.9 157 5-175 60-219 (236)
11 cd01912 proteasome_beta protea 100.0 6.8E-39 1.5E-43 250.3 21.5 160 4-176 29-188 (189)
12 cd03763 proteasome_beta_type_7 100.0 8.6E-39 1.9E-43 250.4 21.3 157 5-176 30-186 (189)
13 PTZ00488 Proteasome subunit be 100.0 2E-38 4.3E-43 257.8 20.8 158 5-176 69-226 (247)
14 cd03765 proteasome_beta_bacter 100.0 3.6E-38 7.9E-43 254.2 22.0 157 5-175 29-204 (236)
15 cd03750 proteasome_alpha_type_ 100.0 4.6E-37 9.9E-42 247.0 20.4 155 5-174 56-215 (227)
16 TIGR03690 20S_bact_beta protea 100.0 5.4E-37 1.2E-41 245.5 20.4 158 5-175 32-201 (219)
17 cd03755 proteasome_alpha_type_ 100.0 9.8E-37 2.1E-41 242.0 19.4 148 5-168 56-207 (207)
18 cd03752 proteasome_alpha_type_ 100.0 1.9E-36 4.1E-41 241.3 19.8 152 4-168 58-213 (213)
19 cd03749 proteasome_alpha_type_ 100.0 2.3E-36 4.9E-41 240.6 19.9 153 5-169 54-211 (211)
20 TIGR03633 arc_protsome_A prote 100.0 3.6E-36 7.8E-41 241.3 20.7 161 4-179 57-221 (224)
21 cd03754 proteasome_alpha_type_ 100.0 3.8E-36 8.1E-41 240.0 19.1 152 5-168 58-215 (215)
22 PTZ00246 proteasome subunit al 100.0 5.6E-36 1.2E-40 244.3 20.3 155 5-172 61-219 (253)
23 KOG0180 20S proteasome, regula 100.0 2.2E-36 4.7E-41 227.0 14.5 168 3-183 36-204 (204)
24 PRK03996 proteasome subunit al 100.0 1.3E-35 2.8E-40 240.5 20.0 159 5-178 65-227 (241)
25 cd01906 proteasome_protease_Hs 100.0 2.2E-35 4.8E-40 228.7 19.9 152 4-168 29-182 (182)
26 cd03751 proteasome_alpha_type_ 100.0 1.8E-35 3.9E-40 235.6 19.1 150 5-168 59-212 (212)
27 cd01911 proteasome_alpha prote 100.0 1.9E-35 4.2E-40 234.8 18.8 150 5-168 56-209 (209)
28 cd03756 proteasome_alpha_arche 100.0 3.2E-35 7E-40 233.8 19.9 150 5-169 57-210 (211)
29 PF00227 Proteasome: Proteasom 100.0 3.9E-35 8.4E-40 228.7 19.8 150 6-168 36-190 (190)
30 cd03753 proteasome_alpha_type_ 100.0 1.1E-34 2.3E-39 231.2 19.4 149 5-168 56-213 (213)
31 TIGR03691 20S_bact_alpha prote 100.0 1.9E-34 4E-39 232.0 19.3 155 5-172 49-211 (228)
32 KOG0177 20S proteasome, regula 100.0 2.8E-34 6.1E-39 218.4 14.6 160 5-177 31-192 (200)
33 KOG0176 20S proteasome, regula 100.0 4.6E-34 9.9E-39 218.7 14.7 155 3-172 61-224 (241)
34 KOG0175 20S proteasome, regula 100.0 4.5E-33 9.7E-38 220.5 13.9 161 2-176 98-258 (285)
35 KOG0178 20S proteasome, regula 100.0 1.9E-32 4E-37 211.7 15.4 161 3-175 59-223 (249)
36 KOG0183 20S proteasome, regula 100.0 1.2E-32 2.6E-37 213.2 12.1 154 5-172 59-216 (249)
37 KOG0181 20S proteasome, regula 100.0 9E-32 2E-36 205.7 12.0 158 5-177 61-222 (233)
38 KOG0863 20S proteasome, regula 100.0 1.9E-30 4.1E-35 202.9 14.4 157 5-173 59-220 (264)
39 KOG0174 20S proteasome, regula 100.0 3.4E-30 7.5E-35 196.8 15.4 163 4-180 48-210 (224)
40 KOG0185 20S proteasome, regula 100.0 2E-29 4.4E-34 197.5 13.4 163 5-177 71-236 (256)
41 KOG0182 20S proteasome, regula 100.0 1.2E-28 2.5E-33 190.8 16.3 164 4-179 64-231 (246)
42 KOG0173 20S proteasome, regula 100.0 7.1E-28 1.5E-32 190.5 13.7 154 7-175 69-222 (271)
43 KOG0184 20S proteasome, regula 99.9 1.9E-26 4E-31 179.6 13.2 150 6-169 64-217 (254)
44 PRK05456 ATP-dependent proteas 99.9 2.2E-25 4.8E-30 172.0 16.3 138 3-167 29-171 (172)
45 cd01913 protease_HslV Protease 99.9 4.1E-25 8.8E-30 169.8 16.1 137 4-167 29-170 (171)
46 cd01901 Ntn_hydrolase The Ntn 99.9 2.8E-24 6E-29 161.5 17.7 133 4-150 29-163 (164)
47 TIGR03692 ATP_dep_HslV ATP-dep 99.9 2.8E-24 6.1E-29 165.2 15.5 138 4-167 29-170 (171)
48 COG5405 HslV ATP-dependent pro 98.8 8.8E-08 1.9E-12 72.2 10.5 136 6-169 38-176 (178)
49 COG3484 Predicted proteasome-t 98.3 2.7E-05 5.8E-10 61.0 12.5 146 15-174 44-204 (255)
50 PF09894 DUF2121: Uncharacteri 87.6 2.2 4.9E-05 33.5 6.2 50 109-171 131-180 (194)
51 PF03928 DUF336: Domain of unk 79.4 3.7 8.1E-05 29.9 4.3 38 135-176 2-39 (132)
52 PRK09732 hypothetical protein; 78.2 9.7 0.00021 28.2 6.2 39 134-176 5-43 (134)
53 KOG3361 Iron binding protein i 74.5 4.6 9.9E-05 29.9 3.4 42 89-143 72-113 (157)
54 COG3193 GlcG Uncharacterized p 74.1 20 0.00043 26.8 6.8 40 133-176 5-44 (141)
55 COG4079 Uncharacterized protei 71.5 14 0.0003 30.3 5.8 120 37-171 32-181 (293)
56 PRK02487 hypothetical protein; 65.0 27 0.00058 26.5 6.1 37 133-174 20-56 (163)
57 COG1754 Uncharacterized C-term 54.4 15 0.00033 30.7 3.3 73 76-165 77-151 (298)
58 COG4245 TerY Uncharacterized p 52.3 30 0.00065 27.3 4.4 41 139-179 21-61 (207)
59 COG4537 ComGC Competence prote 45.4 50 0.0011 23.3 4.2 28 27-54 49-77 (107)
60 PF04539 Sigma70_r3: Sigma-70 40.1 47 0.001 21.3 3.4 31 31-61 3-33 (78)
61 PF01458 UPF0051: Uncharacteri 39.9 90 0.002 24.7 5.7 48 84-149 182-229 (229)
62 PF08269 Cache_2: Cache domain 37.6 71 0.0015 21.4 4.1 36 135-175 34-69 (95)
63 PRK02260 S-ribosylhomocysteina 36.4 1.4E+02 0.0031 22.7 5.9 73 84-156 71-151 (158)
64 cd04513 Glycosylasparaginase G 35.0 1.7E+02 0.0037 24.2 6.6 57 101-173 187-247 (263)
65 PF12481 DUF3700: Aluminium in 34.8 2E+02 0.0044 23.2 6.7 28 4-31 65-92 (228)
66 PF14191 YodL: YodL-like 33.7 46 0.001 23.5 2.7 59 37-96 34-97 (103)
67 PF12385 Peptidase_C70: Papain 33.3 1.1E+02 0.0024 23.5 4.8 44 52-96 95-148 (166)
68 cd04702 ASRGL1_like ASRGL1_lik 33.2 1.8E+02 0.0038 24.1 6.4 54 101-173 179-236 (261)
69 PF04485 NblA: Phycobilisome d 32.5 98 0.0021 19.1 3.6 22 135-156 21-42 (53)
70 PF14804 Jag_N: Jag N-terminus 32.3 56 0.0012 20.0 2.6 29 135-170 4-32 (52)
71 COG0031 CysK Cysteine synthase 31.8 2.8E+02 0.006 23.4 7.4 94 44-149 144-255 (300)
72 COG3140 Uncharacterized protei 30.8 81 0.0018 19.7 3.0 37 109-158 14-50 (60)
73 cd04512 Ntn_Asparaginase_2_lik 30.5 2E+02 0.0044 23.5 6.3 54 101-173 176-233 (248)
74 TIGR02261 benz_CoA_red_D benzo 30.0 98 0.0021 25.6 4.4 39 67-110 94-137 (262)
75 PF05593 RHS_repeat: RHS Repea 30.0 49 0.0011 18.4 1.9 17 89-105 10-26 (38)
76 PF11211 DUF2997: Protein of u 30.0 68 0.0015 19.3 2.6 33 88-120 3-35 (48)
77 PF07499 RuvA_C: RuvA, C-termi 28.9 34 0.00074 20.2 1.2 31 104-147 13-44 (47)
78 COG4728 Uncharacterized protei 28.4 40 0.00086 23.9 1.6 97 9-105 10-120 (124)
79 TIGR01981 sufD FeS assembly pr 26.6 2.1E+02 0.0045 24.6 6.0 52 83-152 301-352 (366)
80 PF03681 UPF0150: Uncharacteri 26.6 70 0.0015 18.6 2.3 18 136-153 29-46 (48)
81 TIGR03192 benz_CoA_bzdQ benzoy 26.5 1.4E+02 0.003 25.1 4.8 31 76-110 132-165 (293)
82 PF11773 PulG: Type II secreto 26.5 1E+02 0.0022 20.9 3.2 36 135-172 33-68 (82)
83 PF01726 LexA_DNA_bind: LexA D 24.8 1.3E+02 0.0027 19.2 3.4 22 38-59 15-36 (65)
84 PF10632 He_PIG_assoc: He_PIG 23.7 96 0.0021 16.7 2.1 22 73-95 5-26 (29)
85 PF01242 PTPS: 6-pyruvoyl tetr 22.9 1.3E+02 0.0028 21.3 3.5 44 21-64 43-96 (123)
86 COG0771 MurD UDP-N-acetylmuram 22.6 75 0.0016 28.4 2.6 63 72-149 346-411 (448)
87 PRK11508 sulfur transfer prote 21.5 2E+02 0.0044 20.4 4.2 34 25-62 41-74 (109)
88 TIGR02259 benz_CoA_red_A benzo 21.5 1.7E+02 0.0036 26.0 4.4 31 76-110 274-307 (432)
89 PF07104 DUF1366: Protein of u 21.2 1.2E+02 0.0026 21.9 3.0 49 90-152 11-59 (116)
90 PLN00191 enolase 21.0 3E+02 0.0065 24.7 6.1 87 69-155 168-259 (457)
91 TIGR01643 YD_repeat_2x YD repe 20.6 93 0.002 17.2 2.0 18 80-97 12-29 (42)
No 1
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2e-44 Score=287.14 Aligned_cols=175 Identities=57% Similarity=0.841 Sum_probs=163.5
Q ss_pred ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCCceeeEEEEEEeCCCc
Q 030109 5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGK 84 (183)
Q Consensus 5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~~P~~v~~lvaG~D~~g~ 84 (183)
..+||++|+++++|+++|..+|++.+.+++|.+++.|+++++++++++.+|+++++++|++|.+||++++||||||++++
T Consensus 38 ~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~ly~~R~~P~~~~~iiaG~D~~~~ 117 (212)
T cd03757 38 DSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMSTEAIAQLLSTILYSRRFFPYYVFNILAGIDEEGK 117 (212)
T ss_pred CCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCC
Confidence 46799999999999999999999999999999999999999999999999999999999988889999999999998788
Q ss_pred eEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCcEE
Q 030109 85 GCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLE 164 (183)
Q Consensus 85 p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~i~ 164 (183)
|+||++||+|++.+++++|+|+|+++++++||+.|+.++|+. .+.++||++||++++.+||+.+.+||+.++++++
T Consensus 118 p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~----~~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~ 193 (212)
T cd03757 118 GVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNN----VERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLE 193 (212)
T ss_pred EEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCc----CCCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEE
Confidence 999999999999999999999999999999999986322211 1124899999999999999999999999999999
Q ss_pred EEEEcCCCeEEEeeeccCC
Q 030109 165 IVVLNKGGIHREYMELRKD 183 (183)
Q Consensus 165 I~ii~k~g~~~~~~~~~~~ 183 (183)
|++|+++|++++.+++|+|
T Consensus 194 i~iit~~g~~~~~~~~~~~ 212 (212)
T cd03757 194 IVIITKDGIEEETFPLRKD 212 (212)
T ss_pred EEEEcCCCEEEEeeccCCC
Confidence 9999999999999999998
No 2
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.4e-43 Score=277.55 Aligned_cols=162 Identities=22% Similarity=0.371 Sum_probs=156.4
Q ss_pred ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCCceeeEEEEEEeCCCc
Q 030109 5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGK 84 (183)
Q Consensus 5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~~P~~v~~lvaG~D~~g~ 84 (183)
..+||++|++|++|+++|+.+|++.+.+++|.+++.|+++++.+++++.+|++|++++|++|.+||+|++||||||++++
T Consensus 33 ~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~ly~~r~~P~~v~~ii~G~D~~~~ 112 (195)
T cd03759 33 DFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKTFSSLISSLLYEKRFGPYFVEPVVAGLDPDGK 112 (195)
T ss_pred CCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEcCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999998899999999999998888
Q ss_pred eEEEEEcCCCceeeeC-eEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCcE
Q 030109 85 GCVYTYDAVGSYERVG-YSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKL 163 (183)
Q Consensus 85 p~Ly~iD~~G~~~~~~-~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~i 163 (183)
|+||++||+|++..+. ++|+|+|++.++++||++|++ +||.+||++++++||..+.+||+.+++++
T Consensus 113 p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~-------------~~s~~ea~~l~~~~l~~~~~rd~~~~~~~ 179 (195)
T cd03759 113 PFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRP-------------DMEPDELFETISQALLSAVDRDALSGWGA 179 (195)
T ss_pred EEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCC-------------CCCHHHHHHHHHHHHHHHHhhCcccCCce
Confidence 9999999999998887 999999999999999999997 99999999999999999999999999999
Q ss_pred EEEEEcCCCeEEEeee
Q 030109 164 EIVVLNKGGIHREYME 179 (183)
Q Consensus 164 ~I~ii~k~g~~~~~~~ 179 (183)
+|++|+++|+++++|+
T Consensus 180 ~i~ii~~~g~~~~~~~ 195 (195)
T cd03759 180 VVYIITKDKVTTRTLK 195 (195)
T ss_pred EEEEEcCCcEEEEecC
Confidence 9999999999998873
No 3
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.4e-41 Score=266.03 Aligned_cols=158 Identities=24% Similarity=0.287 Sum_probs=152.7
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCCceeeEEEEEEeCCC
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEG 83 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~~P~~v~~lvaG~D~~g 83 (183)
...+|||+|++|++++++|+.+|++.+++++|.+++.|+++++++++++.+|+++++++|.+|.+||+|++||||||++
T Consensus 29 ~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la~~ls~~l~~~~~~~~~v~~li~G~D~~- 107 (188)
T cd03761 29 QTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAASKLLSNMLYQYKGMGLSMGTMICGWDKT- 107 (188)
T ss_pred CCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCeEEEEEEEEEeCC-
Confidence 3568999999999999999999999999999999999999999999999999999999999998899999999999964
Q ss_pred ceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCcE
Q 030109 84 KGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKL 163 (183)
Q Consensus 84 ~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~i 163 (183)
+|+||++||+|++.+++++|+|+|++.++++||++|++ +||++||++++.+||..+.+||..+++++
T Consensus 108 g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~-------------~~s~eea~~l~~~~l~~~~~rd~~sg~~~ 174 (188)
T cd03761 108 GPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRY-------------DLSVEEAYDLARRAIYHATHRDAYSGGNV 174 (188)
T ss_pred CCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCC-------------CCCHHHHHHHHHHHHHHHHHhcccCCCCe
Confidence 59999999999999999999999999999999999997 99999999999999999999999999999
Q ss_pred EEEEEcCCCeEE
Q 030109 164 EIVVLNKGGIHR 175 (183)
Q Consensus 164 ~I~ii~k~g~~~ 175 (183)
+|++|+++|+++
T Consensus 175 ~v~ii~~~g~~~ 186 (188)
T cd03761 175 NLYHVREDGWRK 186 (188)
T ss_pred EEEEEcCCceEE
Confidence 999999999974
No 4
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.8e-41 Score=266.51 Aligned_cols=161 Identities=23% Similarity=0.298 Sum_probs=152.3
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhh-c-CCCceeeEEEEEEeC
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYK-R-FFPYYSFNVLGGLDN 81 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~-r-~~P~~v~~lvaG~D~ 81 (183)
...+||++|+++++++++|..+|++.+.++++.+++.|++.++++++++.+++++++++|.+ | .|||++++||||||+
T Consensus 30 ~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~rP~~~~~li~G~d~ 109 (193)
T cd03758 30 DDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAANFTRRELAESLRSRTPYQVNLLLAGYDK 109 (193)
T ss_pred cCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcC
Confidence 45789999999999999999999999999999999999999999999999999999999642 3 369999999999997
Q ss_pred CCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCC
Q 030109 82 EGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGD 161 (183)
Q Consensus 82 ~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~ 161 (183)
+++|+||++||+|++.+++++|+|+|+++++++||+.|++ +||++||++++.+||+.+.+||+.+++
T Consensus 110 ~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~-------------~ms~eeai~l~~~a~~~~~~rd~~~~~ 176 (193)
T cd03758 110 VEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKP-------------DMTVEEALELMKKCIKELKKRFIINLP 176 (193)
T ss_pred CCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCC-------------CCCHHHHHHHHHHHHHHHHHhccccCC
Confidence 6779999999999999999999999999999999999997 999999999999999999999999999
Q ss_pred cEEEEEEcCCCeEEEe
Q 030109 162 KLEIVVLNKGGIHREY 177 (183)
Q Consensus 162 ~i~I~ii~k~g~~~~~ 177 (183)
+++|++|+++|++...
T Consensus 177 ~i~i~ii~~~g~~~~~ 192 (193)
T cd03758 177 NFTVKVVDKDGIRDLE 192 (193)
T ss_pred ceEEEEEcCCCeEeCC
Confidence 9999999999998643
No 5
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.4e-40 Score=262.17 Aligned_cols=162 Identities=26% Similarity=0.335 Sum_probs=152.0
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHH-HHHHhcCCCCCHHHHHHHHHHHHhhhc--CCCceeeEEEEEEe
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHL-IYQHQHNKQMSCPGMAQLLSNTLYYKR--FFPYYSFNVLGGLD 80 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~-~~~~~~~~~i~~~~la~~is~~ly~~r--~~P~~v~~lvaG~D 80 (183)
...+|||+|++|++++++|+.+|++.+++++|.+++ .|+++++.+++++.+|+++++++|++| +|||+|++||||||
T Consensus 31 ~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~~la~~i~~~~y~~~~~~rP~~v~~iiaG~D 110 (197)
T cd03760 31 KNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPKEIHSYLTRVLYNRRSKMNPLWNTLVVGGVD 110 (197)
T ss_pred CCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhcCCCceEEEEEEEEc
Confidence 356899999999999999999999999999999987 577889999999999999999999876 79999999999999
Q ss_pred CCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccC
Q 030109 81 NEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTG 160 (183)
Q Consensus 81 ~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g 160 (183)
++++|+||++||+|++.+++++|+|+|+.+++++||+.|++ .++||++||++++.+||+.+.+||..++
T Consensus 111 ~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~-----------~~~ms~eea~~l~~~~l~~~~~rd~~~~ 179 (197)
T cd03760 111 NEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEK-----------KPDLTEEEARALIEECMKVLYYRDARSI 179 (197)
T ss_pred CCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCC-----------CCCCCHHHHHHHHHHHHHHHHHhccccC
Confidence 76779999999999999999999999999999999999986 2379999999999999999999999999
Q ss_pred CcEEEEEEcCCCeEEE
Q 030109 161 DKLEIVVLNKGGIHRE 176 (183)
Q Consensus 161 ~~i~I~ii~k~g~~~~ 176 (183)
++++|++|+++|++..
T Consensus 180 ~~~~i~ii~~~g~~~~ 195 (197)
T cd03760 180 NKYQIAVVTKEGVEIE 195 (197)
T ss_pred CceEEEEECCCCEEeC
Confidence 9999999999998753
No 6
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-40 Score=255.28 Aligned_cols=179 Identities=53% Similarity=0.786 Sum_probs=171.5
Q ss_pred CcccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCCceeeEEEEEEeCC
Q 030109 3 SFFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNE 82 (183)
Q Consensus 3 ~~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~~P~~v~~lvaG~D~~ 82 (183)
|++.+|||+++|+++++.+|++||+..|.+.+..+++.|++++++.|++..+|++|+.+||.+|++||.+..+|||+|++
T Consensus 57 sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ms~~s~A~lls~~LY~kRFFPYYv~~ilaGiDee 136 (235)
T KOG0179|consen 57 SRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKMSIHSAAQLLSTILYSKRFFPYYVFNILAGIDEE 136 (235)
T ss_pred ccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHhhcccccceeeeeeeccccc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCc
Q 030109 83 GKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDK 162 (183)
Q Consensus 83 g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~ 162 (183)
|++.+|+.||.|++.+..+.|.|+++..++++|+.....+++.. +.+..+.||+|+|++|++.+|..|.+||+.+|++
T Consensus 137 GKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn~~~--e~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~ 214 (235)
T KOG0179|consen 137 GKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHKNQNL--ENAERTPLSLERAIRLVKDAFTSAAERDIYTGDK 214 (235)
T ss_pred CceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccCcCccc--ccCcccccCHHHHHHHHHHHhhhhhhcccccCCc
Confidence 99999999999999999999999999999999999888766543 4555678999999999999999999999999999
Q ss_pred EEEEEEcCCCeEEEeeeccCC
Q 030109 163 LEIVVLNKGGIHREYMELRKD 183 (183)
Q Consensus 163 i~I~ii~k~g~~~~~~~~~~~ 183 (183)
++|+|++|+|+.++++|+|.|
T Consensus 215 l~i~I~tk~gV~~e~~~LrkD 235 (235)
T KOG0179|consen 215 LEICIITKDGVEVETLPLRKD 235 (235)
T ss_pred EEEEEEecCCEEEEeeeccCC
Confidence 999999999999999999987
No 7
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.8e-40 Score=255.92 Aligned_cols=158 Identities=23% Similarity=0.289 Sum_probs=151.9
Q ss_pred ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCCceeeEEEEEEeCCCc
Q 030109 5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGK 84 (183)
Q Consensus 5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~~P~~v~~lvaG~D~~g~ 84 (183)
..+||++|++|++|+++|+.+|++.+.++++.+++.|+++++++++++.+|+++++++|.+| +||++++||||||++++
T Consensus 30 ~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~-~~~~~~~ii~G~d~~~g 108 (188)
T cd03762 30 VTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAASLFKNLCYNYK-EMLSAGIIVAGWDEQNG 108 (188)
T ss_pred CcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHHHHHHHHHHhcc-ccceeeEEEEEEcCCCC
Confidence 56899999999999999999999999999999999999999999999999999999999876 79999999999997667
Q ss_pred eEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCcEE
Q 030109 85 GCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLE 164 (183)
Q Consensus 85 p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~i~ 164 (183)
|+||++||+|++.+++++++|+|+++++++||++|++ +||++||++++++||+.+.+||+.++++++
T Consensus 109 p~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~-------------~~s~~ea~~l~~~al~~~~~rd~~~~~~~~ 175 (188)
T cd03762 109 GQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKP-------------GMTLEECIKFVKNALSLAMSRDGSSGGVIR 175 (188)
T ss_pred cEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCC-------------CCCHHHHHHHHHHHHHHHHHhccccCCCEE
Confidence 9999999999999999999999999999999999997 999999999999999999999999999999
Q ss_pred EEEEcCCCeEEE
Q 030109 165 IVVLNKGGIHRE 176 (183)
Q Consensus 165 I~ii~k~g~~~~ 176 (183)
|++|+++|++++
T Consensus 176 i~~i~~~g~~~~ 187 (188)
T cd03762 176 LVIITKDGVERK 187 (188)
T ss_pred EEEECCCCEEEe
Confidence 999999999754
No 8
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=6.2e-40 Score=255.79 Aligned_cols=155 Identities=30% Similarity=0.500 Sum_probs=150.4
Q ss_pred ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCCceeeEEEEEEeCCCc
Q 030109 5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGK 84 (183)
Q Consensus 5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~~P~~v~~lvaG~D~~g~ 84 (183)
..+||++|+++++++++|..+|++.+.++++.+++.|++.++++++++.+++++++++|.+++|||+|++||||||++|
T Consensus 31 ~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~rP~~v~~ivaG~d~~g- 109 (185)
T TIGR03634 31 NAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKALATLLSNILNSNRFFPFIVQLLVGGVDEEG- 109 (185)
T ss_pred CcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCeEEEEEEEEEeCCC-
Confidence 4689999999999999999999999999999999999999999999999999999999998899999999999999765
Q ss_pred eEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCcEE
Q 030109 85 GCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLE 164 (183)
Q Consensus 85 p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~i~ 164 (183)
|+||++||+|++.+++++++|+|+++++++||+.|++ +||++||++++++||+.+.+||+.++++++
T Consensus 110 ~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~-------------~~s~~ea~~l~~~~l~~~~~r~~~~~~~~~ 176 (185)
T TIGR03634 110 PHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYRE-------------DMSVEEAKKLAVRAIKSAIERDVASGNGID 176 (185)
T ss_pred CEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCC-------------CCCHHHHHHHHHHHHHHHHHhcccCCCCEE
Confidence 9999999999999999999999999999999999997 999999999999999999999999999999
Q ss_pred EEEEcCCCe
Q 030109 165 IVVLNKGGI 173 (183)
Q Consensus 165 I~ii~k~g~ 173 (183)
|++|+++|+
T Consensus 177 v~ii~~~g~ 185 (185)
T TIGR03634 177 VAVITKDGV 185 (185)
T ss_pred EEEEcCCCC
Confidence 999999985
No 9
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-39 Score=254.95 Aligned_cols=157 Identities=31% Similarity=0.471 Sum_probs=151.7
Q ss_pred ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCCceeeEEEEEEeCCCc
Q 030109 5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGK 84 (183)
Q Consensus 5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~~P~~v~~lvaG~D~~g~ 84 (183)
..+||++|+++++++++|+.+|++.+.+++|.+++.|++.++++++++.+++++++++|.+|+|||+|++||||||+ ++
T Consensus 30 ~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~P~~~~~lvaG~d~-~~ 108 (188)
T cd03764 30 NVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALATLLSNILNSSKYFPYIVQLLIGGVDE-EG 108 (188)
T ss_pred CcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEEEEeC-CC
Confidence 46799999999999999999999999999999999999999999999999999999999988999999999999997 56
Q ss_pred eEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCcEE
Q 030109 85 GCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLE 164 (183)
Q Consensus 85 p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~i~ 164 (183)
|+||++||+|++.+++++|+|+|+++++++||+.|++ +|+++||++++++||+.+.+||+.++++++
T Consensus 109 ~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~-------------~~~~~ea~~l~~~~l~~~~~rd~~~~~~i~ 175 (188)
T cd03764 109 PHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKE-------------DMTVEEAKKLAIRAIKSAIERDSASGDGID 175 (188)
T ss_pred CEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCC-------------CCCHHHHHHHHHHHHHHHHhhcCCCCCcEE
Confidence 9999999999999999999999999999999999997 999999999999999999999999999999
Q ss_pred EEEEcCCCeEE
Q 030109 165 IVVLNKGGIHR 175 (183)
Q Consensus 165 I~ii~k~g~~~ 175 (183)
|++|+++|++.
T Consensus 176 i~iv~~~g~~~ 186 (188)
T cd03764 176 VVVITKDGYKE 186 (188)
T ss_pred EEEECCCCeEe
Confidence 99999999764
No 10
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-39 Score=260.37 Aligned_cols=157 Identities=29% Similarity=0.415 Sum_probs=150.3
Q ss_pred ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcC--CCceeeEEEEEEeCC
Q 030109 5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRF--FPYYSFNVLGGLDNE 82 (183)
Q Consensus 5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~--~P~~v~~lvaG~D~~ 82 (183)
..+||++|+|||+|+++|+.+|++.+++++|.+++.|++.++++|+++.+++++++++|.++. |||+|++||||+|+
T Consensus 60 ~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~- 138 (236)
T COG0638 60 NVEKIFKIDDHIGMAIAGLAADAQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDD- 138 (236)
T ss_pred ccceEEEecCCEEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCcccceEEEEEEEEcC-
Confidence 478999999999999999999999999999999999999999999999999999999998886 89999999999998
Q ss_pred CceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCc
Q 030109 83 GKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDK 162 (183)
Q Consensus 83 g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~ 162 (183)
++|+||++||+|++.+++++|+|+|++.++++||++|++ +|++|||++++++||..+.+||..++++
T Consensus 139 ~~p~Ly~~Dp~G~~~~~~~~a~Gsgs~~a~~~Le~~y~~-------------~m~~eeai~la~~al~~a~~rd~~s~~~ 205 (236)
T COG0638 139 GGPRLYSTDPSGSYNEYKATAIGSGSQFAYGFLEKEYRE-------------DLSLEEAIELAVKALRAAIERDAASGGG 205 (236)
T ss_pred CCCeEEEECCCCceeecCEEEEcCCcHHHHHHHHhhccC-------------CCCHHHHHHHHHHHHHHHHhccccCCCC
Confidence 779999999999999999999999999999999999987 8999999999999999999999989999
Q ss_pred EEEEEEcC-CCeEE
Q 030109 163 LEIVVLNK-GGIHR 175 (183)
Q Consensus 163 i~I~ii~k-~g~~~ 175 (183)
++|++|++ +|.+.
T Consensus 206 ~~v~vi~~~~~~~~ 219 (236)
T COG0638 206 IEVAVITKDEGFRK 219 (236)
T ss_pred eEEEEEEcCCCeEE
Confidence 99999999 55544
No 11
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.8e-39 Score=250.33 Aligned_cols=160 Identities=33% Similarity=0.512 Sum_probs=153.9
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCCceeeEEEEEEeCCC
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEG 83 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~~P~~v~~lvaG~D~~g 83 (183)
...+|||+|+++++++++|+.+|++.+.++++.+++.|++.++++++++.+++++++++|.+|.+||++++||||+|+++
T Consensus 29 ~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~P~~~~~iv~G~d~~~ 108 (189)
T cd01912 29 RNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAANLLSNILYSYRGFPYYVSLIVGGVDKGG 108 (189)
T ss_pred CCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCCeEEEEEEEEEcCCC
Confidence 35679999999999999999999999999999999999999999999999999999999998778999999999999867
Q ss_pred ceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCcE
Q 030109 84 KGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKL 163 (183)
Q Consensus 84 ~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~i 163 (183)
+|+||++||+|++.+++++++|+++++++++||+.|++ +||++||++++.+||..+.+||+.+++++
T Consensus 109 ~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~-------------~~s~~ea~~~~~~~l~~~~~~d~~~~~~~ 175 (189)
T cd01912 109 GPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKP-------------DMTLEEAVELVKKAIDSAIERDLSSGGGV 175 (189)
T ss_pred CeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCC-------------CCCHHHHHHHHHHHHHHHHHhcCccCCcE
Confidence 79999999999999999999999999999999999997 99999999999999999999999999999
Q ss_pred EEEEEcCCCeEEE
Q 030109 164 EIVVLNKGGIHRE 176 (183)
Q Consensus 164 ~I~ii~k~g~~~~ 176 (183)
+|++|+++|+++.
T Consensus 176 ~v~vi~~~g~~~~ 188 (189)
T cd01912 176 DVAVITKDGVEEL 188 (189)
T ss_pred EEEEECCCCEEEc
Confidence 9999999998754
No 12
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.6e-39 Score=250.37 Aligned_cols=157 Identities=21% Similarity=0.306 Sum_probs=150.5
Q ss_pred ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCCceeeEEEEEEeCCCc
Q 030109 5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGK 84 (183)
Q Consensus 5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~~P~~v~~lvaG~D~~g~ 84 (183)
..+|||+|+++++|+++|..+|++.+.+++|.+++.|+++++++++++.+|++|++.+|.++ .||+|++||||||++|
T Consensus 30 ~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~l~~~~-~p~~v~~ivaG~d~~g- 107 (189)
T cd03763 30 NCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTALTMLKQHLFRYQ-GHIGAALVLGGVDYTG- 107 (189)
T ss_pred CccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcC-CccceeEEEEeEcCCC-
Confidence 56899999999999999999999999999999999999999999999999999999998765 4999999999999655
Q ss_pred eEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCcEE
Q 030109 85 GCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLE 164 (183)
Q Consensus 85 p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~i~ 164 (183)
|+||++||+|++.+++++|+|+|++.++++||++|++ +||++||++++++||+.+.+||+.++++++
T Consensus 108 ~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~-------------~ls~~ea~~l~~~~l~~~~~rd~~~~~~~~ 174 (189)
T cd03763 108 PHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKP-------------DMTEEEAKKLVCEAIEAGIFNDLGSGSNVD 174 (189)
T ss_pred CEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCC-------------CCCHHHHHHHHHHHHHHHHHhcCcCCCceE
Confidence 9999999999999999999999999999999999997 999999999999999999999999999999
Q ss_pred EEEEcCCCeEEE
Q 030109 165 IVVLNKGGIHRE 176 (183)
Q Consensus 165 I~ii~k~g~~~~ 176 (183)
|++|+++|+++.
T Consensus 175 v~ii~~~g~~~~ 186 (189)
T cd03763 175 LCVITKDGVEYL 186 (189)
T ss_pred EEEEcCCcEEEe
Confidence 999999999864
No 13
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=2e-38 Score=257.76 Aligned_cols=158 Identities=23% Similarity=0.260 Sum_probs=150.2
Q ss_pred ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCCceeeEEEEEEeCCCc
Q 030109 5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGK 84 (183)
Q Consensus 5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~~P~~v~~lvaG~D~~g~ 84 (183)
..+||++|++|++++++|+.+|++.+.+++|.+++.|+++++++|+++.+|++|++++|.+|..|+.+++||||||++|
T Consensus 69 ~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~isv~~la~~ls~~l~~~R~~~~~v~~iiaG~D~~g- 147 (247)
T PTZ00488 69 SVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELISVAAASKILANIVWNYKGMGLSMGTMICGWDKKG- 147 (247)
T ss_pred CcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCeeEEEEEEEEeCCC-
Confidence 5689999999999999999999999999999999999999999999999999999999998866677779999999755
Q ss_pred eEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCcEE
Q 030109 85 GCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLE 164 (183)
Q Consensus 85 p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~i~ 164 (183)
|+||++||+|++.+++++|+|+|+..++++||+.|++ +||.+||++++++||..+.+||..++++++
T Consensus 148 p~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~-------------dms~eEai~l~~kal~~~~~Rd~~sg~~~e 214 (247)
T PTZ00488 148 PGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKW-------------DLNDEEAQDLGRRAIYHATFRDAYSGGAIN 214 (247)
T ss_pred CEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCcC-------------CCCHHHHHHHHHHHHHHHHHhccccCCCeE
Confidence 9999999999999999999999999999999999997 999999999999999999999999999999
Q ss_pred EEEEcCCCeEEE
Q 030109 165 IVVLNKGGIHRE 176 (183)
Q Consensus 165 I~ii~k~g~~~~ 176 (183)
|++|+++|++..
T Consensus 215 i~iI~k~g~~~l 226 (247)
T PTZ00488 215 LYHMQKDGWKKI 226 (247)
T ss_pred EEEEcCCccEEC
Confidence 999999997543
No 14
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.6e-38 Score=254.20 Aligned_cols=157 Identities=15% Similarity=0.161 Sum_probs=146.2
Q ss_pred ccceeEEec----CceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhh----h------cCCC
Q 030109 5 FYILTSCRA----DKCVMASSGFQADVKALQKLLAARHLIYQHQHNK-QMSCPGMAQLLSNTLYY----K------RFFP 69 (183)
Q Consensus 5 ~~~ki~~I~----~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~-~i~~~~la~~is~~ly~----~------r~~P 69 (183)
..+||++|+ +|++|+.||+.||++.+++++|.+++.|++++|. +++++.+|+++++++++ + +.||
T Consensus 29 ~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v~~la~~i~~~l~~~~~q~~~~~~~~~rp 108 (236)
T cd03765 29 TYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTMFDAARYVGETLREVQEQDREALKKAGID 108 (236)
T ss_pred ccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCcc
Confidence 357999998 8999999999999999999999999999999999 89999999999998643 1 1479
Q ss_pred ceeeEEEEEEeCCCceEEEEEcCCCceeee----CeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 030109 70 YYSFNVLGGLDNEGKGCVYTYDAVGSYERV----GYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLV 145 (183)
Q Consensus 70 ~~v~~lvaG~D~~g~p~Ly~iD~~G~~~~~----~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~ 145 (183)
|+|++||||||++.||+||++||+|++.++ +|+|+|. +.+++++||++|++ +||++||++++
T Consensus 109 ~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Lek~yk~-------------~ms~eeai~la 174 (236)
T cd03765 109 FSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILDRVITP-------------DTSLEDAAKCA 174 (236)
T ss_pred eEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHHHhcCC-------------CCCHHHHHHHH
Confidence 999999999997667999999999999998 5689996 79999999999998 99999999999
Q ss_pred HHHHHHHHhhccccCCcEEEEEEcCCCeEE
Q 030109 146 KTCFASATERDIYTGDKLEIVVLNKGGIHR 175 (183)
Q Consensus 146 ~~al~~~~~rd~~~g~~i~I~ii~k~g~~~ 175 (183)
++||..+++||..++++++|++|+|+|+++
T Consensus 175 ~~al~~a~~rd~~sg~~iev~vI~k~G~~~ 204 (236)
T cd03765 175 LVSMDSTMRSNLSVGPPLDLLVYERDSLQV 204 (236)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEEECCCeee
Confidence 999999999999999999999999999976
No 15
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.6e-37 Score=247.05 Aligned_cols=155 Identities=17% Similarity=0.215 Sum_probs=145.9
Q ss_pred ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--hhhc--CCCceeeEEEEEEe
Q 030109 5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTL--YYKR--FFPYYSFNVLGGLD 80 (183)
Q Consensus 5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~l--y~~r--~~P~~v~~lvaG~D 80 (183)
..+||++|++|++|+++|..+|++.+++++|.+++.|+++++++++++.++++|++++ |.++ .|||+|++||+|||
T Consensus 56 ~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D 135 (227)
T cd03750 56 SVHKVEQITPHIGMVYSGMGPDFRVLVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWD 135 (227)
T ss_pred CcceEEEEcCCEEEEEeEcHHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEe
Confidence 4689999999999999999999999999999999999999999999999999999999 4444 68999999999999
Q ss_pred CCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccC
Q 030109 81 NEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTG 160 (183)
Q Consensus 81 ~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g 160 (183)
++ +|+||++||+|++.+++++|+|+|++.++++||++|++ +||++||++++++||..+.+||. ++
T Consensus 136 ~~-g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~-------------~ms~eeai~l~~~~l~~~~~~~l-~~ 200 (227)
T cd03750 136 EG-GPYLYQVDPSGSYFTWKATAIGKNYSNAKTFLEKRYNE-------------DLELEDAIHTAILTLKEGFEGQM-TE 200 (227)
T ss_pred CC-CCEEEEECCCCCEEeeeEEEECCCCHHHHHHHHhhccC-------------CCCHHHHHHHHHHHHHHHhcccC-CC
Confidence 75 59999999999999999999999999999999999998 99999999999999999999875 89
Q ss_pred CcEEEEEEcCC-CeE
Q 030109 161 DKLEIVVLNKG-GIH 174 (183)
Q Consensus 161 ~~i~I~ii~k~-g~~ 174 (183)
++++|++|+++ |++
T Consensus 201 ~~iev~iv~~~~~~~ 215 (227)
T cd03750 201 KNIEIGICGETKGFR 215 (227)
T ss_pred CcEEEEEEECCCCEE
Confidence 99999999996 555
No 16
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=5.4e-37 Score=245.46 Aligned_cols=158 Identities=22% Similarity=0.314 Sum_probs=146.5
Q ss_pred ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhh---cCCCceeeEEEEEEeC
Q 030109 5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYK---RFFPYYSFNVLGGLDN 81 (183)
Q Consensus 5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~---r~~P~~v~~lvaG~D~ 81 (183)
..+||++|++|++|+++|+.+|++.+.+++|.+++.|+++++++++++.+|++|++++|.+ .+|||+|++||||||+
T Consensus 32 ~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~ 111 (219)
T TIGR03690 32 DVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDGKANRLAAMVRGNLPAAMQGLAVVPLLAGYDL 111 (219)
T ss_pred CcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhhhhccCCceEEEEEEEECC
Confidence 5689999999999999999999999999999999999999999999999999999999764 3789999999999996
Q ss_pred C-CceEEEEEcCCCc-eeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 030109 82 E-GKGCVYTYDAVGS-YERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYT 159 (183)
Q Consensus 82 ~-g~p~Ly~iD~~G~-~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~ 159 (183)
+ ++|+||++||+|+ +..++++|+|+|++.++++||++|++ +||.+||++++.+||..+.+||..+
T Consensus 112 ~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~-------------~ms~eeai~l~~~al~~~~~~d~~s 178 (219)
T TIGR03690 112 DAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSP-------------DLDEDDALRVAVEALYDAADDDSAT 178 (219)
T ss_pred CCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCC-------------CcCHHHHHHHHHHHHHHHHhccccc
Confidence 4 6799999999995 66778999999999999999999997 9999999999999999999999877
Q ss_pred CCc-------EEEEEEcCCCeEE
Q 030109 160 GDK-------LEIVVLNKGGIHR 175 (183)
Q Consensus 160 g~~-------i~I~ii~k~g~~~ 175 (183)
++. ++|++|+++|++.
T Consensus 179 ~~~~~~~~~~~ei~ii~~~g~~~ 201 (219)
T TIGR03690 179 GGPDLVRGIYPTVVVITADGARR 201 (219)
T ss_pred CCcccccccccEEEEEccCceEE
Confidence 764 3999999999764
No 17
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.8e-37 Score=241.97 Aligned_cols=148 Identities=16% Similarity=0.266 Sum_probs=140.4
Q ss_pred ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--hhhc--CCCceeeEEEEEEe
Q 030109 5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTL--YYKR--FFPYYSFNVLGGLD 80 (183)
Q Consensus 5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~l--y~~r--~~P~~v~~lvaG~D 80 (183)
..+||++|++|++|+++|+.+|++.+.+++|.+++.|+++++++|+++.+++++++++ |+++ .|||+|++||+|||
T Consensus 56 ~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D 135 (207)
T cd03755 56 TVRKICMLDDHVCLAFAGLTADARVLINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFD 135 (207)
T ss_pred ccCcEEEECCCEEEEEecchhhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEe
Confidence 4679999999999999999999999999999999999999999999999999999999 5554 68999999999999
Q ss_pred CCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccC
Q 030109 81 NEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTG 160 (183)
Q Consensus 81 ~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g 160 (183)
++++|+||++||+|++.+++++|+|+|+..++++||++|++ +|+.+||++++++||..+.+ .++
T Consensus 136 ~~~~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~-------------~ms~eeai~l~~~~l~~~~~---~~~ 199 (207)
T cd03755 136 PDGTPRLYQTDPSGTYSAWKANAIGRNSKTVREFLEKNYKE-------------EMTRDDTIKLAIKALLEVVQ---SGS 199 (207)
T ss_pred CCCCeEEEEECCCcCEEcceEEEECCCCHHHHHHHHhhccC-------------CCCHHHHHHHHHHHHHHHhC---CCC
Confidence 87789999999999999999999999999999999999998 99999999999999999997 578
Q ss_pred CcEEEEEE
Q 030109 161 DKLEIVVL 168 (183)
Q Consensus 161 ~~i~I~ii 168 (183)
+++||+++
T Consensus 200 ~~~e~~~~ 207 (207)
T cd03755 200 KNIELAVM 207 (207)
T ss_pred CeEEEEEC
Confidence 89999985
No 18
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.9e-36 Score=241.31 Aligned_cols=152 Identities=18% Similarity=0.215 Sum_probs=143.2
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--hhh--cCCCceeeEEEEEE
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTL--YYK--RFFPYYSFNVLGGL 79 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~l--y~~--r~~P~~v~~lvaG~ 79 (183)
...+||++|++|++|+++|+.+|++.+.+++|.+++.|+++++++++++.++++|+..+ |++ +.|||+|++||+||
T Consensus 58 ~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~ 137 (213)
T cd03752 58 FSSEKIYKIDDHIACAVAGITSDANILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGW 137 (213)
T ss_pred cCcceEEEecCCEEEEEecChHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEE
Confidence 35689999999999999999999999999999999999999999999999999999987 432 36899999999999
Q ss_pred eCCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 030109 80 DNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYT 159 (183)
Q Consensus 80 D~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~ 159 (183)
|++.+|+||++||+|++.+++++|+|+|+..++++||+.|++ +||++||++++++||..+.+||..+
T Consensus 138 D~~~g~~ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~y~~-------------~ms~eea~~l~~~al~~~~~r~~~~ 204 (213)
T cd03752 138 DKHYGFQLYQSDPSGNYSGWKATAIGNNNQAAQSLLKQDYKD-------------DMTLEEALALAVKVLSKTMDSTKLT 204 (213)
T ss_pred eCCCCCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHhccC-------------CCCHHHHHHHHHHHHHHHHhccCCC
Confidence 976679999999999999999999999999999999999997 9999999999999999999999999
Q ss_pred CCcEEEEEE
Q 030109 160 GDKLEIVVL 168 (183)
Q Consensus 160 g~~i~I~ii 168 (183)
+.+++|++|
T Consensus 205 ~~~~ei~~~ 213 (213)
T cd03752 205 SEKLEFATL 213 (213)
T ss_pred CCcEEEEEC
Confidence 999999875
No 19
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.3e-36 Score=240.61 Aligned_cols=153 Identities=14% Similarity=0.190 Sum_probs=143.0
Q ss_pred ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh--h--cCCCceeeEEEEEEe
Q 030109 5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYY--K--RFFPYYSFNVLGGLD 80 (183)
Q Consensus 5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~--~--r~~P~~v~~lvaG~D 80 (183)
..+||++|+++++|++||+.+|++.+.+++|.+++.|+++++++++++.+|++++++++. + +.|||+|++||+|||
T Consensus 54 ~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D 133 (211)
T cd03749 54 YQKKIFKVDDHIGIAIAGLTADARVLSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYD 133 (211)
T ss_pred ccccEEEeCCCEEEEEEeChHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEc
Confidence 458999999999999999999999999999999999999999999999999999998854 3 368999999999999
Q ss_pred CCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcc-cc
Q 030109 81 NEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDI-YT 159 (183)
Q Consensus 81 ~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~-~~ 159 (183)
++ +|+||++||+|++.+++++|+|+|++.++++||++|++ .++|+++||+++++++|+.++.+|. .+
T Consensus 134 ~~-gp~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~Le~~~~~-----------~~~ms~ee~i~~~~~~l~~~~~~~~~~~ 201 (211)
T cd03749 134 ES-GPHLFQTCPSGNYFEYKATSIGARSQSARTYLERHFEE-----------FEDCSLEELIKHALRALRETLPGEQELT 201 (211)
T ss_pred CC-CCeEEEECCCcCEeeeeEEEECCCcHHHHHHHHHhhcc-----------ccCCCHHHHHHHHHHHHHHHhccCCCCC
Confidence 75 59999999999999999999999999999999999995 2389999999999999999999987 89
Q ss_pred CCcEEEEEEc
Q 030109 160 GDKLEIVVLN 169 (183)
Q Consensus 160 g~~i~I~ii~ 169 (183)
++++||++|+
T Consensus 202 ~~~iei~ii~ 211 (211)
T cd03749 202 IKNVSIAIVG 211 (211)
T ss_pred CCcEEEEEEC
Confidence 9999999984
No 20
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=3.6e-36 Score=241.32 Aligned_cols=161 Identities=19% Similarity=0.229 Sum_probs=149.0
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh--hc--CCCceeeEEEEEE
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYY--KR--FFPYYSFNVLGGL 79 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~--~r--~~P~~v~~lvaG~ 79 (183)
...+||++|+++++|+++|+.+|++.+.+.++.+++.|+++++++++++.++++++++++. ++ .|||+|++||||+
T Consensus 57 ~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~ 136 (224)
T TIGR03633 57 SSIEKIFKIDDHIGAATSGLVADARVLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGV 136 (224)
T ss_pred CccceEEEECCCEEEEEeecHHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEE
Confidence 3467999999999999999999999999999999999999999999999999999999843 32 6899999999999
Q ss_pred eCCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 030109 80 DNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYT 159 (183)
Q Consensus 80 D~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~ 159 (183)
|+ ++|+||++||+|++.+++++++|+|+.+++++||++|++ +|+.+||++++++||..+.+ |+.+
T Consensus 137 d~-~~~~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~-------------~~~~eeai~l~~~al~~~~~-d~~~ 201 (224)
T TIGR03633 137 DD-GGPRLFETDPSGALLEYKATAIGAGRQAVTEFLEKEYRE-------------DLSLDEAIELALKALYSAVE-DKLT 201 (224)
T ss_pred eC-CcCEEEEECCCCCeecceEEEECCCCHHHHHHHHHhccC-------------CCCHHHHHHHHHHHHHHHhc-ccCC
Confidence 95 569999999999999999999999999999999999997 99999999999999999888 8899
Q ss_pred CCcEEEEEEcCCCeEEEeee
Q 030109 160 GDKLEIVVLNKGGIHREYME 179 (183)
Q Consensus 160 g~~i~I~ii~k~g~~~~~~~ 179 (183)
+++++|++|+++|...+.+.
T Consensus 202 ~~~i~i~ii~~~g~~~~~~~ 221 (224)
T TIGR03633 202 PENVEVAYITVEDKKFRKLS 221 (224)
T ss_pred CCcEEEEEEEcCCCcEEECC
Confidence 99999999999996555443
No 21
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.8e-36 Score=239.99 Aligned_cols=152 Identities=19% Similarity=0.240 Sum_probs=141.0
Q ss_pred ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--hhhc--CCCceeeEEEEEEe
Q 030109 5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTL--YYKR--FFPYYSFNVLGGLD 80 (183)
Q Consensus 5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~l--y~~r--~~P~~v~~lvaG~D 80 (183)
..+||++|+++++|++||+.+|++.+.+++|.+++.|+++++++++++.+|+++++++ |+++ .|||++++||||||
T Consensus 58 ~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D 137 (215)
T cd03754 58 TVTHLFRITDEIGCVMTGMIADSRSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGID 137 (215)
T ss_pred ccCceEEEcCCEEEEEEechhhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEe
Confidence 4579999999999999999999999999999999999999999999999999999974 6554 57999999999999
Q ss_pred CCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCC--CHHHHHHHHHHHHHHHHhhccc
Q 030109 81 NEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPL--SEAEAVDLVKTCFASATERDIY 158 (183)
Q Consensus 81 ~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~l--s~~eA~~l~~~al~~~~~rd~~ 158 (183)
++++|+||++||+|++.+++++|+|+|+..++++||++|+++ .+| |++||++++++||..+.+||..
T Consensus 138 ~~~gp~Ly~~Dp~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~-----------~~~~~s~eeai~l~~~al~~~~~rd~~ 206 (215)
T cd03754 138 EELGPQLYKCDPAGYFAGYKATAAGVKEQEATNFLEKKLKKK-----------PDLIESYEETVELAISCLQTVLSTDFK 206 (215)
T ss_pred CCCCeEEEEEcCCccEEeEEEEEECCCcHHHHHHHHHHhccc-----------cccCCCHHHHHHHHHHHHHHHhcccCC
Confidence 866799999999999999999999999999999999999971 147 9999999999999999999964
Q ss_pred cCCcEEEEEE
Q 030109 159 TGDKLEIVVL 168 (183)
Q Consensus 159 ~g~~i~I~ii 168 (183)
++++||+||
T Consensus 207 -~~~~ei~~~ 215 (215)
T cd03754 207 -ATEIEVGVV 215 (215)
T ss_pred -CCcEEEEEC
Confidence 899999885
No 22
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=5.6e-36 Score=244.33 Aligned_cols=155 Identities=15% Similarity=0.167 Sum_probs=146.9
Q ss_pred ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh--h--cCCCceeeEEEEEEe
Q 030109 5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYY--K--RFFPYYSFNVLGGLD 80 (183)
Q Consensus 5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~--~--r~~P~~v~~lvaG~D 80 (183)
..+||++|+++++++++|+.+|++.+.+.+|.+++.|++.++.+++++.+++.++..++. + ++|||+|++||||||
T Consensus 61 ~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D 140 (253)
T PTZ00246 61 INEKIYKIDSHIFCAVAGLTADANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYD 140 (253)
T ss_pred CcccEEEecCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEe
Confidence 468999999999999999999999999999999999999999999999999999998743 2 368999999999999
Q ss_pred CCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccC
Q 030109 81 NEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTG 160 (183)
Q Consensus 81 ~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g 160 (183)
++++|+||++||+|++.+++++|+|+|+++++++||++|++ +|+++||++++++||..+.+||..++
T Consensus 141 ~~~gp~Ly~~D~~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~-------------~ms~eeai~l~~~al~~~~~~d~~s~ 207 (253)
T PTZ00246 141 ENLGYQLYHTDPSGNYSGWKATAIGQNNQTAQSILKQEWKE-------------DLTLEQGLLLAAKVLTKSMDSTSPKA 207 (253)
T ss_pred CCCCcEEEEECCCCCEecceEEEECCCcHHHHHHHHHhccC-------------CCCHHHHHHHHHHHHHHHHhccCCCC
Confidence 76679999999999999999999999999999999999997 99999999999999999999999999
Q ss_pred CcEEEEEEcCCC
Q 030109 161 DKLEIVVLNKGG 172 (183)
Q Consensus 161 ~~i~I~ii~k~g 172 (183)
++++|++|+++|
T Consensus 208 ~~vev~ii~~~~ 219 (253)
T PTZ00246 208 DKIEVGILSHGE 219 (253)
T ss_pred CcEEEEEEecCC
Confidence 999999999986
No 23
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-36 Score=227.00 Aligned_cols=168 Identities=20% Similarity=0.365 Sum_probs=164.2
Q ss_pred CcccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCCceeeEEEEEEeCC
Q 030109 3 SFFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNE 82 (183)
Q Consensus 3 ~~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~~P~~v~~lvaG~D~~ 82 (183)
|.+++|||+|.|++++|.+|+..|+|.+.++++...+.|++++++.|.|+.+++++|+++|++|+.||.+..+|||+|++
T Consensus 36 stdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~~~s~mvS~~lYekRfgpYf~~PvVAGl~~~ 115 (204)
T KOG0180|consen 36 STDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPETFSSMVSSLLYEKRFGPYFTEPVVAGLDDD 115 (204)
T ss_pred eccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcHHHHHHHHHHHHHhhcCCcccceeEeccCCC
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEcCCCceee-eCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCC
Q 030109 83 GKGCVYTYDAVGSYER-VGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGD 161 (183)
Q Consensus 83 g~p~Ly~iD~~G~~~~-~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~ 161 (183)
++|+|..+|..|+... .+++++|.+++..++++|..|+| +|..|+.++.+.+||..+.+||+.+|+
T Consensus 116 ~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~p-------------nmepd~LFetisQa~Lna~DRDalSGw 182 (204)
T KOG0180|consen 116 NKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEP-------------NMEPDELFETISQALLNAVDRDALSGW 182 (204)
T ss_pred CCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCC-------------CCCHHHHHHHHHHHHHhHhhhhhhccC
Confidence 9999999999999886 57999999999999999999998 999999999999999999999999999
Q ss_pred cEEEEEEcCCCeEEEeeeccCC
Q 030109 162 KLEIVVLNKGGIHREYMELRKD 183 (183)
Q Consensus 162 ~i~I~ii~k~g~~~~~~~~~~~ 183 (183)
...|.||+||.++.+++|.|||
T Consensus 183 Ga~vyiI~kdkv~~r~lK~RmD 204 (204)
T KOG0180|consen 183 GAVVYIITKDKVTKRTLKGRMD 204 (204)
T ss_pred CeEEEEEccchhhhhhhhhcCC
Confidence 9999999999999999999998
No 24
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=1.3e-35 Score=240.51 Aligned_cols=159 Identities=19% Similarity=0.239 Sum_probs=147.4
Q ss_pred ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh--hc--CCCceeeEEEEEEe
Q 030109 5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYY--KR--FFPYYSFNVLGGLD 80 (183)
Q Consensus 5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~--~r--~~P~~v~~lvaG~D 80 (183)
..+||++|+++++|+++|..+|++.++++++.+++.|++.++++++++.++++++++++. ++ .|||+|++||||||
T Consensus 65 ~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d 144 (241)
T PRK03996 65 SIEKIFKIDDHIGAASAGLVADARVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVD 144 (241)
T ss_pred ccceEEEEcCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEe
Confidence 468999999999999999999999999999999999999999999999999999999853 32 68999999999999
Q ss_pred CCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccC
Q 030109 81 NEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTG 160 (183)
Q Consensus 81 ~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g 160 (183)
++ +|+||++||+|++.+++++|+|+|++.++++||+.|++ +|+++||++++++||..+.++ ..++
T Consensus 145 ~~-gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~-------------~~s~eeai~l~~~al~~~~~~-~~~~ 209 (241)
T PRK03996 145 DG-GPRLFETDPSGAYLEYKATAIGAGRDTVMEFLEKNYKE-------------DLSLEEAIELALKALAKANEG-KLDP 209 (241)
T ss_pred CC-cCEEEEECCCCCeecceEEEECCCcHHHHHHHHHhccc-------------CCCHHHHHHHHHHHHHHHhcc-CCCC
Confidence 75 59999999999999999999999999999999999998 999999999999999999886 5689
Q ss_pred CcEEEEEEcCCCeEEEee
Q 030109 161 DKLEIVVLNKGGIHREYM 178 (183)
Q Consensus 161 ~~i~I~ii~k~g~~~~~~ 178 (183)
++++|++|+++|...+.+
T Consensus 210 ~~i~i~ii~~~~~~~~~~ 227 (241)
T PRK03996 210 ENVEIAYIDVETKKFRKL 227 (241)
T ss_pred CcEEEEEEECCCCcEEEC
Confidence 999999999998655544
No 25
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=2.2e-35 Score=228.69 Aligned_cols=152 Identities=28% Similarity=0.387 Sum_probs=145.6
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcC--CCceeeEEEEEEeC
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRF--FPYYSFNVLGGLDN 81 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~--~P~~v~~lvaG~D~ 81 (183)
...+|||+|+++++++++|..+|++.+.+.++.++..|+++++++++++.+++++++++|.++. |||++++||||||+
T Consensus 29 ~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~p~~~~~lv~G~d~ 108 (182)
T cd01906 29 STVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALAKLLANLLYEYTQSLRPLGVSLLVAGVDE 108 (182)
T ss_pred CCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCccChheEEEEEEEeC
Confidence 3578999999999999999999999999999999999999999999999999999999998775 99999999999998
Q ss_pred CCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCC
Q 030109 82 EGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGD 161 (183)
Q Consensus 82 ~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~ 161 (183)
+++|+||.+||+|++.+++++|+|+|+..++++||+.|++ +||.+||++++++||..+.+||..+++
T Consensus 109 ~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~-------------~~s~~ea~~l~~~~l~~~~~~~~~~~~ 175 (182)
T cd01906 109 EGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKP-------------DMTLEEAIELALKALKSALERDLYSGG 175 (182)
T ss_pred CCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccC-------------CCCHHHHHHHHHHHHHHHHcccCCCCC
Confidence 6679999999999999999999999999999999999997 899999999999999999999998999
Q ss_pred cEEEEEE
Q 030109 162 KLEIVVL 168 (183)
Q Consensus 162 ~i~I~ii 168 (183)
.++|.+|
T Consensus 176 ~~~i~ii 182 (182)
T cd01906 176 NIEVAVI 182 (182)
T ss_pred CEEEEEC
Confidence 9999875
No 26
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.8e-35 Score=235.63 Aligned_cols=150 Identities=16% Similarity=0.073 Sum_probs=139.7
Q ss_pred ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh--h--cCCCceeeEEEEEEe
Q 030109 5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYY--K--RFFPYYSFNVLGGLD 80 (183)
Q Consensus 5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~--~--r~~P~~v~~lvaG~D 80 (183)
..+||++|++|++++++|+.+|++.+++++|.+++.|+++++.+++++.++++|+++++. + ..|||+|++||+|||
T Consensus 59 ~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D 138 (212)
T cd03751 59 SNKRIFNVDRHIGIAVAGLLADGRHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYD 138 (212)
T ss_pred hhcceeEecCcEEEEEEEChHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEe
Confidence 458999999999999999999999999999999999999999999999999999998744 2 268999999999999
Q ss_pred CCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccC
Q 030109 81 NEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTG 160 (183)
Q Consensus 81 ~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g 160 (183)
++ +|+||++||+|++.+++++|+|+|+.+++++||++|++ +||++||+++++++|..+.+.+...+
T Consensus 139 ~~-gp~Ly~~D~~Gs~~~~~~~a~G~g~~~a~~~Lek~~~~-------------dms~eeai~l~~~~L~~~~~~~~~~~ 204 (212)
T cd03751 139 SD-GPQLYMIEPSGVSYGYFGCAIGKGKQAAKTELEKLKFS-------------ELTCREAVKEAAKIIYIVHDEIKDKA 204 (212)
T ss_pred CC-cCEEEEECCCCCEEeeEEEEECCCCHHHHHHHHHhccC-------------CCCHHHHHHHHHHHHHHHhhccCCCC
Confidence 65 59999999999999999999999999999999999997 99999999999999999998666678
Q ss_pred CcEEEEEE
Q 030109 161 DKLEIVVL 168 (183)
Q Consensus 161 ~~i~I~ii 168 (183)
.++||.++
T Consensus 205 ~~iei~~~ 212 (212)
T cd03751 205 FELELSWV 212 (212)
T ss_pred ccEEEEEC
Confidence 89999875
No 27
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=1.9e-35 Score=234.77 Aligned_cols=150 Identities=21% Similarity=0.277 Sum_probs=142.6
Q ss_pred ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--hhhc--CCCceeeEEEEEEe
Q 030109 5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTL--YYKR--FFPYYSFNVLGGLD 80 (183)
Q Consensus 5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~l--y~~r--~~P~~v~~lvaG~D 80 (183)
..+||++|+++++++++|..+|++.+.+.++.+++.|+++++++++++.+|+++++++ |.++ .|||+|++||+|||
T Consensus 56 ~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d 135 (209)
T cd01911 56 SVEKIFKIDDHIGCAVAGLTADARVLVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYD 135 (209)
T ss_pred ccceEEEecCCeEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEc
Confidence 5689999999999999999999999999999999999999999999999999999988 4443 57999999999999
Q ss_pred CCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccC
Q 030109 81 NEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTG 160 (183)
Q Consensus 81 ~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g 160 (183)
++++|+||.+||.|++.+++++++|+|+..++++||+.|++ +|+.+||++++++||..+.+||. ++
T Consensus 136 ~~~~~~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~-------------~ms~~ea~~l~~~~l~~~~~~d~-~~ 201 (209)
T cd01911 136 EEGGPQLYQTDPSGTYFGYKATAIGKGSQEAKTFLEKRYKK-------------DLTLEEAIKLALKALKEVLEEDK-KA 201 (209)
T ss_pred CCCCcEEEEECCCCCeeeeeEEEeCCCcHHHHHHHHHhccc-------------CCCHHHHHHHHHHHHHHHHhccC-CC
Confidence 88779999999999999999999999999999999999997 99999999999999999999998 99
Q ss_pred CcEEEEEE
Q 030109 161 DKLEIVVL 168 (183)
Q Consensus 161 ~~i~I~ii 168 (183)
++++|+++
T Consensus 202 ~~~~i~i~ 209 (209)
T cd01911 202 KNIEIAVV 209 (209)
T ss_pred CcEEEEEC
Confidence 99999875
No 28
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.2e-35 Score=233.83 Aligned_cols=150 Identities=19% Similarity=0.255 Sum_probs=141.6
Q ss_pred ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh--h--cCCCceeeEEEEEEe
Q 030109 5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYY--K--RFFPYYSFNVLGGLD 80 (183)
Q Consensus 5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~--~--r~~P~~v~~lvaG~D 80 (183)
..+||++|+++++|+++|+.+|++.+.++++.+++.|+++++++++++.++++++++++. + +.|||++++||||||
T Consensus 57 ~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D 136 (211)
T cd03756 57 SIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVD 136 (211)
T ss_pred ccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEe
Confidence 457999999999999999999999999999999999999999999999999999998844 3 368999999999999
Q ss_pred CCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccC
Q 030109 81 NEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTG 160 (183)
Q Consensus 81 ~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g 160 (183)
++ +|+||++||+|++.+++++++|+|++.++++||+.|++ +|+++||++++++||..+.++|. ++
T Consensus 137 ~~-~~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~-------------~m~~~ea~~l~~~~l~~~~~~~~-~~ 201 (211)
T cd03756 137 DG-GPRLFETDPSGAYNEYKATAIGSGRQAVTEFLEKEYKE-------------DMSLEEAIELALKALYAALEENE-TP 201 (211)
T ss_pred CC-CCEEEEECCCCCeeeeEEEEECCCCHHHHHHHHhhccC-------------CCCHHHHHHHHHHHHHHHhcccC-CC
Confidence 75 59999999999999999999999999999999999997 99999999999999999998876 89
Q ss_pred CcEEEEEEc
Q 030109 161 DKLEIVVLN 169 (183)
Q Consensus 161 ~~i~I~ii~ 169 (183)
++++|++|+
T Consensus 202 ~~~~v~ii~ 210 (211)
T cd03756 202 ENVEIAYVT 210 (211)
T ss_pred CcEEEEEEe
Confidence 999999986
No 29
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=3.9e-35 Score=228.74 Aligned_cols=150 Identities=27% Similarity=0.421 Sum_probs=140.9
Q ss_pred cceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----hhhcCCCceeeEEEEEEeC
Q 030109 6 YILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTL----YYKRFFPYYSFNVLGGLDN 81 (183)
Q Consensus 6 ~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~l----y~~r~~P~~v~~lvaG~D~ 81 (183)
.+||++|++|++++++|..+|++.+.++++.+++.|++.++.+++++.+++.+++.+ +..++||+++++|+||||+
T Consensus 36 ~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~ 115 (190)
T PF00227_consen 36 VDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPISPEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDE 115 (190)
T ss_dssp SSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEET
T ss_pred cceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCccccchhhhhhhHHHHhhhcccccccCccccceeeeecc
Confidence 589999999999999999999999999999999999999999999996666666555 4455789999999999998
Q ss_pred CCceEEEEEcCCCceeee-CeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccC
Q 030109 82 EGKGCVYTYDAVGSYERV-GYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTG 160 (183)
Q Consensus 82 ~g~p~Ly~iD~~G~~~~~-~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g 160 (183)
+++|+||.+||+|++.++ +++|+|+|++.++++||+.|++ +|+++||++++++||+.+.+||..++
T Consensus 116 ~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~-------------~~~~~ea~~~~~~~l~~~~~~d~~~~ 182 (190)
T PF00227_consen 116 DGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKP-------------DLSLEEAIELALKALKEAIDRDILSG 182 (190)
T ss_dssp TTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTT-------------TSSHHHHHHHHHHHHHHHHHHBTTST
T ss_pred ccccceeeeccccccccccccccchhcchhhhHHHHhhccC-------------CCCHHHHHHHHHHHHHHHHhhCCccC
Confidence 888999999999999999 6999999999999999999987 99999999999999999999999999
Q ss_pred CcEEEEEE
Q 030109 161 DKLEIVVL 168 (183)
Q Consensus 161 ~~i~I~ii 168 (183)
++++|+||
T Consensus 183 ~~~~v~vi 190 (190)
T PF00227_consen 183 DNIEVAVI 190 (190)
T ss_dssp SEEEEEEE
T ss_pred CeEEEEEC
Confidence 99999987
No 30
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.1e-34 Score=231.17 Aligned_cols=149 Identities=18% Similarity=0.201 Sum_probs=139.4
Q ss_pred ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh--hc-------CCCceeeEE
Q 030109 5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYY--KR-------FFPYYSFNV 75 (183)
Q Consensus 5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~--~r-------~~P~~v~~l 75 (183)
..+||++|++|++|+++|+.+|++.+.+.+|.+++.|+++++++++++.+++++++++|. ++ .|||+|++|
T Consensus 56 ~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~i 135 (213)
T cd03753 56 SVEKIMEIDDHIGCAMSGLIADARTLIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALL 135 (213)
T ss_pred ccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEE
Confidence 468999999999999999999999999999999999999999999999999999999964 21 489999999
Q ss_pred EEEEeCCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhh
Q 030109 76 LGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATER 155 (183)
Q Consensus 76 vaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~r 155 (183)
|||||++ +|+||++||+|++.+++++|+|+|++.++++||++|++ +||++||++++++||+.+.++
T Consensus 136 i~G~D~~-gp~Ly~vd~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~-------------~ls~eeai~l~~~~l~~~~~~ 201 (213)
T cd03753 136 IAGVDEN-GPQLFHTDPSGTFTRCDAKAIGSGSEGAQSSLQEKYHK-------------DMTLEEAEKLALSILKQVMEE 201 (213)
T ss_pred EEEEcCC-CCEEEEECCCCCeecccEEEECCCcHHHHHHHHhhccC-------------CCCHHHHHHHHHHHHHHHhcc
Confidence 9999964 59999999999999999999999999999999999998 999999999999999998876
Q ss_pred ccccCCcEEEEEE
Q 030109 156 DIYTGDKLEIVVL 168 (183)
Q Consensus 156 d~~~g~~i~I~ii 168 (183)
+ .++++++|++|
T Consensus 202 ~-~~~~~~ei~~~ 213 (213)
T cd03753 202 K-LNSTNVELATV 213 (213)
T ss_pred c-CCCCcEEEEEC
Confidence 6 77899999985
No 31
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=1.9e-34 Score=231.96 Aligned_cols=155 Identities=17% Similarity=0.166 Sum_probs=142.2
Q ss_pred ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhh---cCCCceeeEEEEEEe
Q 030109 5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHN-KQMSCPGMAQLLSNTLYYK---RFFPYYSFNVLGGLD 80 (183)
Q Consensus 5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~-~~i~~~~la~~is~~ly~~---r~~P~~v~~lvaG~D 80 (183)
..+||++|+||++|+++|+.+|++.+++.++.+++.|++.++ .+++++.+|+.+++.++.. +.|||+|++||+|||
T Consensus 49 ~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~~~~~~~v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d 128 (228)
T TIGR03691 49 SLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSYDRRDVTGRGLANAYAQTLGTIFTEQQKPYEVEICVAEVG 128 (228)
T ss_pred CcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHhhcccccccccCcceEEEEEEEEc
Confidence 468999999999999999999999999999999999999997 6899999999888877531 468999999999998
Q ss_pred C-CCceEEEEEcCCCceeeeC-eEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH--hhc
Q 030109 81 N-EGKGCVYTYDAVGSYERVG-YSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASAT--ERD 156 (183)
Q Consensus 81 ~-~g~p~Ly~iD~~G~~~~~~-~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~--~rd 156 (183)
+ +.+|+||++||+|++.+++ ++|+|+|++.++++||++|++ +||++||++++++||..+. +||
T Consensus 129 ~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~y~~-------------~ms~eeai~la~~aL~~~~~~~r~ 195 (228)
T TIGR03691 129 ETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKESYRD-------------GLSLADALGLAVQALRAGGNGEKR 195 (228)
T ss_pred CCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHHhcCC-------------CCCHHHHHHHHHHHHHHHhccccc
Confidence 6 4569999999999999976 899999999999999999997 9999999999999999995 477
Q ss_pred cccCCcEEEEEEcCCC
Q 030109 157 IYTGDKLEIVVLNKGG 172 (183)
Q Consensus 157 ~~~g~~i~I~ii~k~g 172 (183)
..+++++||.+|++++
T Consensus 196 ~~~~~~iEv~ii~k~~ 211 (228)
T TIGR03691 196 ELDAASLEVAVLDRSR 211 (228)
T ss_pred cCCccceEEEEEeCCC
Confidence 7899999999999865
No 32
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-34 Score=218.36 Aligned_cols=160 Identities=21% Similarity=0.292 Sum_probs=152.5
Q ss_pred ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh--hcCCCceeeEEEEEEeCC
Q 030109 5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYY--KRFFPYYSFNVLGGLDNE 82 (183)
Q Consensus 5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~--~r~~P~~v~~lvaG~D~~ 82 (183)
.++|++.+++++.|+++|..+|+..+.+++.+.++.|+++||.++||+++|+++++.+.+ +..+||.|++|+||+|++
T Consensus 31 ~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aahFtR~~La~~LRsr~~yqV~~LvaGYd~~ 110 (200)
T KOG0177|consen 31 DHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAAHFTRRELAESLRSRTPYQVNILVAGYDPE 110 (200)
T ss_pred cccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHHHHHHHHHHHHHhcCCCceEEEEEeccCCC
Confidence 467999999999999999999999999999999999999999999999999999999954 326799999999999998
Q ss_pred CceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCc
Q 030109 83 GKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDK 162 (183)
Q Consensus 83 g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~ 162 (183)
.+|.||++|..|+..+.+|++.|.++.++.++|+++|++ +||.+||+++..+|+.++.+|-..+..+
T Consensus 111 ~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~p-------------dmt~eea~~lmkKCv~El~kRlvin~~~ 177 (200)
T KOG0177|consen 111 EGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKP-------------DMTIEEALDLMKKCVLELKKRLVINLPG 177 (200)
T ss_pred CCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCC-------------CCCHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 889999999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred EEEEEEcCCCeEEEe
Q 030109 163 LEIVVLNKGGIHREY 177 (183)
Q Consensus 163 i~I~ii~k~g~~~~~ 177 (183)
+.|.||+|||+....
T Consensus 178 f~v~IVdkdGir~~~ 192 (200)
T KOG0177|consen 178 FIVKIVDKDGIRKLD 192 (200)
T ss_pred cEEEEEcCCCceecc
Confidence 999999999997654
No 33
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-34 Score=218.75 Aligned_cols=155 Identities=20% Similarity=0.208 Sum_probs=143.2
Q ss_pred CcccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh-------hc--CCCceee
Q 030109 3 SFFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYY-------KR--FFPYYSF 73 (183)
Q Consensus 3 ~~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~-------~r--~~P~~v~ 73 (183)
+-...||++|++||+|++||+.||++.++++.|.++++|.+.+|++++++.+.+.+|++... .+ .|||||+
T Consensus 61 p~sveKi~eid~HIgca~SGl~aDarTlve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGVa 140 (241)
T KOG0176|consen 61 PSSVEKIVEIDDHIGCAMSGLIADARTLVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVA 140 (241)
T ss_pred chhhhhheehhhceeeeccccccchHHHHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceE
Confidence 34567999999999999999999999999999999999999999999999999999998721 12 3899999
Q ss_pred EEEEEEeCCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 030109 74 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASAT 153 (183)
Q Consensus 74 ~lvaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~ 153 (183)
+|+||+|++| |+||+.||+|+++++++-|+|+|+.-+.+.|++.|++ +++++||++++++.|+.+.
T Consensus 141 lliAG~D~~g-pqL~h~dPSGtf~~~~AKAIGSgsEga~~~L~~e~~~-------------~ltL~ea~~~~L~iLkqVM 206 (241)
T KOG0176|consen 141 LLIAGHDETG-PQLYHLDPSGTFIRYKAKAIGSGSEGAESSLQEEYHK-------------DLTLKEAEKIVLKILKQVM 206 (241)
T ss_pred EEEeeccCCC-ceEEEeCCCCceEEecceeccccchHHHHHHHHHHhh-------------cccHHHHHHHHHHHHHHHH
Confidence 9999999654 9999999999999999999999999999999999998 9999999999999999999
Q ss_pred hhccccCCcEEEEEEcCCC
Q 030109 154 ERDIYTGDKLEIVVLNKGG 172 (183)
Q Consensus 154 ~rd~~~g~~i~I~ii~k~g 172 (183)
+.. .+.+|++|.+|++.|
T Consensus 207 eeK-l~~~Nvev~~vt~e~ 224 (241)
T KOG0176|consen 207 EEK-LNSNNVEVAVVTPEG 224 (241)
T ss_pred HHh-cCccceEEEEEcccC
Confidence 875 567899999999985
No 34
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-33 Score=220.47 Aligned_cols=161 Identities=24% Similarity=0.283 Sum_probs=155.6
Q ss_pred CCcccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCCceeeEEEEEEeC
Q 030109 2 GSFFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDN 81 (183)
Q Consensus 2 ~~~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~~P~~v~~lvaG~D~ 81 (183)
+|+.++||.+||++++-+++|.+|||+.+-+.+..+|+.|++++++.|||.+.++++|+++|++|...+.+..+|+|||+
T Consensus 98 asqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSVsaASKllsN~~y~YkGmGLsmGtMi~G~Dk 177 (285)
T KOG0175|consen 98 ASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISVSAASKLLSNMVYQYKGMGLSMGTMIAGWDK 177 (285)
T ss_pred echhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceehHHHHHHHHHHHhhccCcchhheeeEeeccC
Confidence 57889999999999999999999999999999999999999999999999999999999999999778999999999998
Q ss_pred CCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCC
Q 030109 82 EGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGD 161 (183)
Q Consensus 82 ~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~ 161 (183)
.| |.||.+|..|+..+.+-+++|+|+.+|+++|+..|++ +||.+||.+|+++|+.+|..||+.+|+
T Consensus 178 ~G-P~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~-------------dls~eEA~~L~rrAI~hAThRDaySGG 243 (285)
T KOG0175|consen 178 KG-PGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRY-------------DLSDEEAYDLARRAIYHATHRDAYSGG 243 (285)
T ss_pred CC-CceEEEcCCCCEecCceEeecCCCceeEEeeccCCCC-------------CCCHHHHHHHHHHHHHHHHhcccccCc
Confidence 76 9999999999999999999999999999999999998 999999999999999999999999999
Q ss_pred cEEEEEEcCCCeEEE
Q 030109 162 KLEIVVLNKGGIHRE 176 (183)
Q Consensus 162 ~i~I~ii~k~g~~~~ 176 (183)
-+.+..|+.+|++..
T Consensus 244 ~vnlyHv~edGW~~v 258 (285)
T KOG0175|consen 244 VVNLYHVKEDGWVKV 258 (285)
T ss_pred eEEEEEECCccceec
Confidence 999999999999743
No 35
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-32 Score=211.68 Aligned_cols=161 Identities=18% Similarity=0.195 Sum_probs=150.8
Q ss_pred CcccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--hhc--CCCceeeEEEEE
Q 030109 3 SFFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLY--YKR--FFPYYSFNVLGG 78 (183)
Q Consensus 3 ~~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly--~~r--~~P~~v~~lvaG 78 (183)
+.+.+||++|+|||+|+++|+.+|+..+++.+|-.+|.|.+++|.++|++.|++.++++.+ ++- .||||||+|.+|
T Consensus 59 ~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaG 138 (249)
T KOG0178|consen 59 SIPMEKIYKLNDNIACAVAGLTSDANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAG 138 (249)
T ss_pred cccHHHhhhcCCceEEEEecccccHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeec
Confidence 5678899999999999999999999999999999999999999999999999999999994 322 589999999999
Q ss_pred EeCCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccc
Q 030109 79 LDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIY 158 (183)
Q Consensus 79 ~D~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~ 158 (183)
||..-|.+||+.||||++-.|++.++|.++..++++|+..|++ ..++++||+.+|++.|......+.+
T Consensus 139 wd~~~gyqLy~SdPSGny~gWka~ciG~N~~Aa~s~Lkqdykd------------d~~~~~eA~~laikvL~kt~d~~~l 206 (249)
T KOG0178|consen 139 WDDRYGYQLYQSDPSGNYGGWKATCIGANSGAAQSMLKQDYKD------------DENDLEEAKALAIKVLSKTLDSGSL 206 (249)
T ss_pred eecCcceEEEecCCCCCccccceeeeccchHHHHHHHHhhhcc------------ccccHHHHHHHHHHHHHhhcccCCC
Confidence 9987779999999999999999999999999999999999997 2567999999999999999999999
Q ss_pred cCCcEEEEEEcCCCeEE
Q 030109 159 TGDKLEIVVLNKGGIHR 175 (183)
Q Consensus 159 ~g~~i~I~ii~k~g~~~ 175 (183)
+.+.+||+.|++++...
T Consensus 207 t~eklEia~~~k~~~k~ 223 (249)
T KOG0178|consen 207 TAEKLEIATITKDCNKT 223 (249)
T ss_pred ChhheEEEEEEecCCce
Confidence 99999999999987654
No 36
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-32 Score=213.19 Aligned_cols=154 Identities=18% Similarity=0.289 Sum_probs=143.4
Q ss_pred ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--hhhc--CCCceeeEEEEEEe
Q 030109 5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTL--YYKR--FFPYYSFNVLGGLD 80 (183)
Q Consensus 5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~l--y~~r--~~P~~v~~lvaG~D 80 (183)
...||..+++|++|+++|+.+|++.+++++|-+|+.|++..+.|++++.++++|+.+. |++. .||||++.||+|+|
T Consensus 59 ~~rkI~~ld~hV~mafaGl~aDArilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD 138 (249)
T KOG0183|consen 59 TVRKISMLDDHVVMAFAGLTADARILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFD 138 (249)
T ss_pred hhhhheeecceeeEEecCCCccceeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeC
Confidence 4679999999999999999999999999999999999999999999999999999998 4322 58999999999999
Q ss_pred CCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccC
Q 030109 81 NEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTG 160 (183)
Q Consensus 81 ~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g 160 (183)
++|.|+||++||+|.+++|++.|+|.+++.+..+||++|+++ +-.+..++++|++++|.++.+. .+
T Consensus 139 ~~g~p~lyqtePsG~f~ewka~aiGr~sk~VrEflEK~y~e~-----------~~~~~~~~ikL~ir~LleVvqs---~~ 204 (249)
T KOG0183|consen 139 PDGTPRLYQTEPSGIFSEWKANAIGRSSKTVREFLEKNYKEE-----------AIATEGETIKLAIRALLEVVQS---GG 204 (249)
T ss_pred CCCCeeeEeeCCCcchhhhhccccccccHHHHHHHHHhcccc-----------cccccccHHHHHHHHHHHHhhc---CC
Confidence 999999999999999999999999999999999999999982 3588999999999999999986 46
Q ss_pred CcEEEEEEcCCC
Q 030109 161 DKLEIVVLNKGG 172 (183)
Q Consensus 161 ~~i~I~ii~k~g 172 (183)
++++++|+++.+
T Consensus 205 ~nie~aVm~~~~ 216 (249)
T KOG0183|consen 205 KNIEVAVMKRRK 216 (249)
T ss_pred CeeEEEEEecCC
Confidence 799999999887
No 37
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9e-32 Score=205.68 Aligned_cols=158 Identities=16% Similarity=0.162 Sum_probs=146.9
Q ss_pred ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhh--c--CCCceeeEEEEEEe
Q 030109 5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYK--R--FFPYYSFNVLGGLD 80 (183)
Q Consensus 5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~--r--~~P~~v~~lvaG~D 80 (183)
..+|+++|.++|+|.+||+.+|++.+++..|+.++.|...++++|++..|++.++..|+++ . .||||++++++|||
T Consensus 61 sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~ 140 (233)
T KOG0181|consen 61 SVRKVEKITPHIGCVYSGMGPDYRVLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWD 140 (233)
T ss_pred hhhhHhhccCCcceEEecCCCceeehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecC
Confidence 3579999999999999999999999999999999999999999999999999999999553 2 69999999999999
Q ss_pred CCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccC
Q 030109 81 NEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTG 160 (183)
Q Consensus 81 ~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g 160 (183)
+. +|.||++||+|++..|+++|+|.+...+..+||++|++ +|.+|+|+..++.+|++..+-. .+.
T Consensus 141 ~~-~p~LyQvdPSGsyf~wkatA~Gkn~v~aktFlEkR~~e-------------dleldd~ihtailtlkE~fege-~~~ 205 (233)
T KOG0181|consen 141 EG-GPLLYQVDPSGSYFAWKATAMGKNYVNAKTFLEKRYNE-------------DLELDDAIHTAILTLKESFEGE-MTA 205 (233)
T ss_pred CC-ceeEEEECCccceeehhhhhhccCcchHHHHHHHHhcc-------------ccccchHHHHHHHHHHHHhccc-ccc
Confidence 65 69999999999999999999999999999999999998 9999999999999999999986 468
Q ss_pred CcEEEEEEcCCCeEEEe
Q 030109 161 DKLEIVVLNKGGIHREY 177 (183)
Q Consensus 161 ~~i~I~ii~k~g~~~~~ 177 (183)
+++||.++..++.+..+
T Consensus 206 ~nieigv~~~~~F~~lt 222 (233)
T KOG0181|consen 206 KNIEIGVCGENGFRRLT 222 (233)
T ss_pred CceEEEEecCCceeecC
Confidence 89999999988776544
No 38
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.9e-30 Score=202.87 Aligned_cols=157 Identities=18% Similarity=0.202 Sum_probs=145.9
Q ss_pred ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh--hc--CCCceeeEEEEEEe
Q 030109 5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYY--KR--FFPYYSFNVLGGLD 80 (183)
Q Consensus 5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~--~r--~~P~~v~~lvaG~D 80 (183)
..+||++|++|++++++|+.+|++.+.+++|.+|..+++.+++++++..++..+++.++. +| .|||||+++++|+|
T Consensus 59 ~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYD 138 (264)
T KOG0863|consen 59 HQKKIFKIDDHIGISIAGLTADARVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYD 138 (264)
T ss_pred hhheeEecccccceEEeccCcchHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeec
Confidence 457999999999999999999999999999999999999999999999999999998854 22 57999999999999
Q ss_pred CCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhc-ccc
Q 030109 81 NEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERD-IYT 159 (183)
Q Consensus 81 ~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd-~~~ 159 (183)
+.| |+||+++|+|++.+++.+++|+.|+.+..+||++..+ +++++.||.++.++.||+..+..| .++
T Consensus 139 e~G-~hl~e~~Psg~v~e~~g~sIGsRSQsARTyLEr~~e~-----------f~~~~~eELI~~gi~Alr~tlp~de~lt 206 (264)
T KOG0863|consen 139 ESG-PHLYEFCPSGNVFECKGMSIGSRSQSARTYLERNLEE-----------FEDSSPEELIKHGIMALRETLPEDEDLT 206 (264)
T ss_pred CCC-ceeEEEcCCccEEEEeeeecccchhhHHHHHHHHHHH-----------HhcCCHHHHHHHHHHHHHhhcCcccccc
Confidence 765 9999999999999999999999999999999998876 569999999999999999999854 788
Q ss_pred CCcEEEEEEcCCCe
Q 030109 160 GDKLEIVVLNKGGI 173 (183)
Q Consensus 160 g~~i~I~ii~k~g~ 173 (183)
+.+++|+|+.||..
T Consensus 207 ~~nvsI~Ivgkd~p 220 (264)
T KOG0863|consen 207 GENVSIAIVGKDEP 220 (264)
T ss_pred cceeEEEEEeCCCc
Confidence 99999999999864
No 39
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.4e-30 Score=196.83 Aligned_cols=163 Identities=27% Similarity=0.341 Sum_probs=154.7
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCCceeeEEEEEEeCCC
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEG 83 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~~P~~v~~lvaG~D~~g 83 (183)
+..+|+-+|.|+|+|+.||..||.|.+.+.++..+..|..++++++++...|+.++++.|++|. -+.+++||||||+..
T Consensus 48 RvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~v~~aA~l~r~~~Y~~re-~L~AgliVAGwD~~~ 126 (224)
T KOG0174|consen 48 RVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPLVHTAASLFREICYNYRE-MLSAGLIVAGWDEKE 126 (224)
T ss_pred hhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhCHH-hhhcceEEeeccccc
Confidence 4567999999999999999999999999999999999999999999999999999999999883 388999999999987
Q ss_pred ceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCcE
Q 030109 84 KGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKL 163 (183)
Q Consensus 84 ~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~i 163 (183)
+.++|.+---|+..+-++..-|+||.+++++++.+|++ +|++||++.+.++|+..+++||-.+|+.|
T Consensus 127 gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~-------------nMt~EE~~~fvk~Av~lAi~rDGsSGGvi 193 (224)
T KOG0174|consen 127 GGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRP-------------NMTLEECVRFVKNAVSLAIERDGSSGGVI 193 (224)
T ss_pred CceEEEeecCceEeecceeeccCCceeeeeeehhhcCC-------------CCCHHHHHHHHHHHHHHHHhccCCCCCEE
Confidence 79999998888999999999999999999999999998 99999999999999999999999999999
Q ss_pred EEEEEcCCCeEEEeeec
Q 030109 164 EIVVLNKGGIHREYMEL 180 (183)
Q Consensus 164 ~I~ii~k~g~~~~~~~~ 180 (183)
.+.+|+++|++++.++.
T Consensus 194 R~~~I~~~Gver~~~~~ 210 (224)
T KOG0174|consen 194 RLVIINKAGVERRFFPG 210 (224)
T ss_pred EEEEEccCCceEEEecC
Confidence 99999999999988764
No 40
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2e-29 Score=197.47 Aligned_cols=163 Identities=20% Similarity=0.321 Sum_probs=150.8
Q ss_pred ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHhhhc--CCCceeeEEEEEEeC
Q 030109 5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIY-QHQHNKQMSCPGMAQLLSNTLYYKR--FFPYYSFNVLGGLDN 81 (183)
Q Consensus 5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~-~~~~~~~i~~~~la~~is~~ly~~r--~~P~~v~~lvaG~D~ 81 (183)
-++|+++|+||+++|++|..+|+|.+.+.+......- .+..|+.+.|+.++++|+++||.+| +.|++..++|||+|+
T Consensus 71 nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvlY~rRsKmnPlwntlvVgGv~~ 150 (256)
T KOG0185|consen 71 NVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVLYARRSKMNPLWNTLVVGGVDN 150 (256)
T ss_pred CceeeEEecCceEEecCccHHHHHHHHHHHHHHHhcccccccccccChHHHHHHHHHHHHHhhhccCchhhheeEeeecC
Confidence 3679999999999999999999999999998877653 3566799999999999999999988 899999999999999
Q ss_pred CCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCC
Q 030109 82 EGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGD 161 (183)
Q Consensus 82 ~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~ 161 (183)
+|.|.|-.+|..|..++.+.+|+|.|.+.++++|++.|..+ .++++.+||.+++.+||+...+||+.+.+
T Consensus 151 ~g~~~lg~V~~~G~~Y~~~~vATGfg~hLa~P~lR~~~~~k----------~~~~s~eeA~~li~~cMrVL~YRD~ra~n 220 (256)
T KOG0185|consen 151 TGEPFLGYVDLLGVAYESPVVATGFGAHLALPLLRDEWEKK----------GEDLSREEAEALIEKCMRVLYYRDARASN 220 (256)
T ss_pred CCCeeEEEEeeccccccCchhhhhhHHHhhhHHHHHhhhcc----------chhhHHHHHHHHHHHHHHHHhcccccccc
Confidence 89999999999999999999999999999999999999842 35899999999999999999999999999
Q ss_pred cEEEEEEcCCCeEEEe
Q 030109 162 KLEIVVLNKGGIHREY 177 (183)
Q Consensus 162 ~i~I~ii~k~g~~~~~ 177 (183)
+++|++|+++|++...
T Consensus 221 ~fqva~v~~eGv~i~~ 236 (256)
T KOG0185|consen 221 EFQVATVDEEGVTISK 236 (256)
T ss_pred ceEEEEEcccceEecC
Confidence 9999999999997653
No 41
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-28 Score=190.77 Aligned_cols=164 Identities=18% Similarity=0.198 Sum_probs=151.3
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--hhhc--CCCceeeEEEEEE
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTL--YYKR--FFPYYSFNVLGGL 79 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~l--y~~r--~~P~~v~~lvaG~ 79 (183)
-.+..+|+|+.+|+|+++|..+|++..++++|.++..+++.+|.+||++.||++++++. |.++ +||+||.+++.|+
T Consensus 64 ~tvt~~f~itk~ig~v~tG~~aDar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~ 143 (246)
T KOG0182|consen 64 STVTHLFRITKKIGCVITGMIADARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGV 143 (246)
T ss_pred ccceeEEEeeccceEEEecCCcchHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999987 5555 8999999999999
Q ss_pred eCCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 030109 80 DNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYT 159 (183)
Q Consensus 80 D~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~ 159 (183)
|++.||.+|++||.|.+..++++|.|.....+.++||++|+++ .+++.+|++++++.||..++.-|..
T Consensus 144 D~E~gP~vYk~DpAGyy~g~kAtaaG~Kq~e~tsfLEKk~Kk~-----------~~~t~~e~ve~ai~al~~sl~~Dfk- 211 (246)
T KOG0182|consen 144 DEERGPSVYKTDPAGYYYGFKATAAGVKQQEATSFLEKKYKKD-----------IDLTFEETVETAISALQSSLGIDFK- 211 (246)
T ss_pred ccccCcceEeecCccccccceeeecccchhhHHHHHHHhhccC-----------ccchHHHHHHHHHHHHHHHHhcccC-
Confidence 9998899999999999999999999999999999999999982 3588999999999999999999976
Q ss_pred CCcEEEEEEcCCCeEEEeee
Q 030109 160 GDKLEIVVLNKGGIHREYME 179 (183)
Q Consensus 160 g~~i~I~ii~k~g~~~~~~~ 179 (183)
...+||.+++++..+...|.
T Consensus 212 ~se~EVgvv~~~~p~f~~Ls 231 (246)
T KOG0182|consen 212 SSELEVGVVTVDNPEFRILS 231 (246)
T ss_pred CcceEEEEEEcCCcceeecc
Confidence 46999999999987665553
No 42
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.1e-28 Score=190.50 Aligned_cols=154 Identities=21% Similarity=0.342 Sum_probs=146.5
Q ss_pred ceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCCceeeEEEEEEeCCCceE
Q 030109 7 ILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGC 86 (183)
Q Consensus 7 ~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~~P~~v~~lvaG~D~~g~p~ 86 (183)
.||+.|.++|+|+.+|..+|...+.+.+..++..|++..++.+.+-..-+++.+.|+.+-. -.++.+||+|+|++| |+
T Consensus 69 ~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~~rVv~A~~mlkQ~LFrYqG-~IgA~LiiGGvD~TG-pH 146 (271)
T KOG0173|consen 69 EKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRKPRVVTALRMLKQHLFRYQG-HIGAALILGGVDPTG-PH 146 (271)
T ss_pred HHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCCCceeeHHHHHHHHHHHhcC-cccceeEEccccCCC-Cc
Confidence 4899999999999999999999999999999999999999999999999999999976543 388999999999987 99
Q ss_pred EEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCcEEEE
Q 030109 87 VYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIV 166 (183)
Q Consensus 87 Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~i~I~ 166 (183)
||++.|-|+....+|.+.|||+..++++||.+|++ +|+.|||.+|+.+|+...+..|..||.|+++|
T Consensus 147 Ly~i~phGStd~~Pf~alGSGslaAmsvlEsr~k~-------------dlt~eea~~Lv~eAi~AGi~nDLgSGsnvdlc 213 (271)
T KOG0173|consen 147 LYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWKP-------------DLTKEEAIKLVCEAIAAGIFNDLGSGSNVDLC 213 (271)
T ss_pred eEEEcCCCCcCccceeeeccchHHHHHHHHHhcCc-------------ccCHHHHHHHHHHHHHhhhccccCCCCceeEE
Confidence 99999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred EEcCCCeEE
Q 030109 167 VLNKGGIHR 175 (183)
Q Consensus 167 ii~k~g~~~ 175 (183)
||++.+++.
T Consensus 214 VI~~~~~~~ 222 (271)
T KOG0173|consen 214 VITKKGVEY 222 (271)
T ss_pred EEeCCCccc
Confidence 999988765
No 43
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.9e-26 Score=179.62 Aligned_cols=150 Identities=13% Similarity=0.101 Sum_probs=131.6
Q ss_pred cceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhc----CCCceeeEEEEEEeC
Q 030109 6 YILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKR----FFPYYSFNVLGGLDN 81 (183)
Q Consensus 6 ~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r----~~P~~v~~lvaG~D~ 81 (183)
.+||+.|++||+|+++|+.+|.+.+.+++|.++..|+.+++.++|...++.+++++.+-.. .||||+++++++||.
T Consensus 64 n~ri~~V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~ 143 (254)
T KOG0184|consen 64 NERIFSVDRHIGMAVAGLIPDGRHLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDD 143 (254)
T ss_pred CCceEeecccccEEEeccccchHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeC
Confidence 5799999999999999999999999999999999999999999999999999999995432 589999999999996
Q ss_pred CCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCC
Q 030109 82 EGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGD 161 (183)
Q Consensus 82 ~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~ 161 (183)
+ +|+||++||+|.++.++.+|+|.|.+.+...|||.--. .|+++|+++.+.+.+..+.+..-.-.-
T Consensus 144 ~-g~~LymiepSG~~~~Y~~aaiGKgrq~aKtElEKL~~~-------------~mt~~e~VkeaakIiY~~HDe~KdK~f 209 (254)
T KOG0184|consen 144 E-GPQLYMIEPSGSSYGYKGAAIGKGRQAAKTELEKLKID-------------EMTCKELVKEAAKIIYKVHDENKDKEF 209 (254)
T ss_pred C-CceEEEEcCCCCccceeeeeccchhHHHHHHHHhcccc-------------cccHHHHHHHHHheeEeecccccCcce
Confidence 5 59999999999999999999999999999999996443 899999999999998776654222222
Q ss_pred cEEEEEEc
Q 030109 162 KLEIVVLN 169 (183)
Q Consensus 162 ~i~I~ii~ 169 (183)
.+|+.++.
T Consensus 210 eiEm~wvg 217 (254)
T KOG0184|consen 210 EIEMGWVG 217 (254)
T ss_pred EEEEEEEE
Confidence 45667775
No 44
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.94 E-value=2.2e-25 Score=172.03 Aligned_cols=138 Identities=17% Similarity=0.129 Sum_probs=118.9
Q ss_pred CcccceeEEe-cCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcC-CCceeeEEEEEEe
Q 030109 3 SFFYILTSCR-ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRF-FPYYSFNVLGGLD 80 (183)
Q Consensus 3 ~~~~~ki~~I-~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~-~P~~v~~lvaG~D 80 (183)
+...+||++| +++++|+.+|..+|+|.|.+.++.+++.|+. +. ++.+|+++..+. ..+. +|+.+++|++ |
T Consensus 29 ~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~~---~~~~a~l~~~l~-~~~~~~~l~~~~lv~--d 100 (172)
T PRK05456 29 KGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG--NL---LRAAVELAKDWR-TDRYLRRLEAMLIVA--D 100 (172)
T ss_pred cCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC--cc---HHHHHHHHHHHH-hccCCCccEEEEEEE--c
Confidence 3457899999 9999999999999999999999999999882 22 577777665543 2232 5788999994 4
Q ss_pred CCCceEEEEEcCCCceeee--CeEEEcCChhhhHHHHHcccC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcc
Q 030109 81 NEGKGCVYTYDAVGSYERV--GYSSQGSGSTLIMPFLDNQLK-SPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDI 157 (183)
Q Consensus 81 ~~g~p~Ly~iD~~G~~~~~--~~~a~G~gs~~~~~~Le~~~~-~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~ 157 (183)
+ |+||.+|+.|+..+. ++.++|+|+.+++++||++|+ + +| ||++++++|++++.+||.
T Consensus 101 ~---~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~-------------~m---eA~~la~kai~~A~~Rd~ 161 (172)
T PRK05456 101 K---EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENT-------------DL---SAEEIAEKALKIAADICI 161 (172)
T ss_pred C---CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcC-------------CC---CHHHHHHHHHHHHHHhCe
Confidence 3 699999999999776 799999999999999999999 7 88 999999999999999999
Q ss_pred ccCCcEEEEE
Q 030109 158 YTGDKLEIVV 167 (183)
Q Consensus 158 ~~g~~i~I~i 167 (183)
.++++++|-.
T Consensus 162 ~sg~~i~v~~ 171 (172)
T PRK05456 162 YTNHNITIEE 171 (172)
T ss_pred eCCCcEEEEE
Confidence 9999998864
No 45
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.93 E-value=4.1e-25 Score=169.82 Aligned_cols=137 Identities=16% Similarity=0.149 Sum_probs=116.5
Q ss_pred cccceeEEecC-ceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCCce-eeEEEEEEeC
Q 030109 4 FFYILTSCRAD-KCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYY-SFNVLGGLDN 81 (183)
Q Consensus 4 ~~~~ki~~I~~-~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~~P~~-v~~lvaG~D~ 81 (183)
...+||++|++ |++|+++|..+|++.|.++++.+++.|+++.+ +.+++++..++ ..+.+|+. +.++++++
T Consensus 29 ~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~-----~~aa~l~~~l~-~~~~~~~l~a~~iv~~~-- 100 (171)
T cd01913 29 GNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLL-----RAAVELAKDWR-TDRYLRRLEAMLIVADK-- 100 (171)
T ss_pred CCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHH-----HHHHHHHHHHH-hccCcCceEEEEEEeCC--
Confidence 45679999999 99999999999999999999999999999877 35566655543 23444666 66666543
Q ss_pred CCceEEEEEcCCCceeee--CeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHhhccc
Q 030109 82 EGKGCVYTYDAVGSYERV--GYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP-LSEAEAVDLVKTCFASATERDIY 158 (183)
Q Consensus 82 ~g~p~Ly~iD~~G~~~~~--~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~-ls~~eA~~l~~~al~~~~~rd~~ 158 (183)
++||.+||.|+..+. ++.++||||.+++++||.+|++ + || +.+++++|++.+.+||+.
T Consensus 101 ---~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~-------------~~ms---~~~la~~Av~~A~~rd~~ 161 (171)
T cd01913 101 ---EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDH-------------TDLS---AEEIARKALKIAADICIY 161 (171)
T ss_pred ---CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhcc-------------CCCC---HHHHHHHHHHHHHhhCcc
Confidence 389999999999998 4999999999999999999997 5 99 559999999999999999
Q ss_pred cCCcEEEEE
Q 030109 159 TGDKLEIVV 167 (183)
Q Consensus 159 ~g~~i~I~i 167 (183)
||++++|-.
T Consensus 162 tg~~i~~~~ 170 (171)
T cd01913 162 TNHNITVEE 170 (171)
T ss_pred cCCCEEEEe
Confidence 999998764
No 46
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.93 E-value=2.8e-24 Score=161.46 Aligned_cols=133 Identities=23% Similarity=0.274 Sum_probs=126.7
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhc-CCCceeeEEEEEEeCC
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKR-FFPYYSFNVLGGLDNE 82 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r-~~P~~v~~lvaG~D~~ 82 (183)
...+|+++++++++++++|..+|++.+.++++.+++.|++.++.++++..+++.+++.++.++ ++|+++++||||+|+
T Consensus 29 ~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iiag~~~- 107 (164)
T cd01901 29 SPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALAKELAKLLQVYTQGRPFGVNLIVAGVDE- 107 (164)
T ss_pred CCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCcceEEEEEEEcC-
Confidence 457899999999999999999999999999999999999999999999999999999998866 489999999999997
Q ss_pred CceEEEEEcCCCceeee-CeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 030109 83 GKGCVYTYDAVGSYERV-GYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFA 150 (183)
Q Consensus 83 g~p~Ly~iD~~G~~~~~-~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~ 150 (183)
++|+||.+||+|++... .++++|+++..+.++|++.|++ +++.+||++++.+||.
T Consensus 108 ~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~-------------~~~~~~~~~~~~~~l~ 163 (164)
T cd01901 108 GGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKP-------------DMTLEEAVELALKALK 163 (164)
T ss_pred CCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcC-------------CCCHHHHHHHHHHHHh
Confidence 67999999999999999 9999999999999999999997 8999999999999985
No 47
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.92 E-value=2.8e-24 Score=165.17 Aligned_cols=138 Identities=18% Similarity=0.174 Sum_probs=115.4
Q ss_pred cccceeEEe-cCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCCce-eeEEEEEEeC
Q 030109 4 FFYILTSCR-ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYY-SFNVLGGLDN 81 (183)
Q Consensus 4 ~~~~ki~~I-~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~~P~~-v~~lvaG~D~ 81 (183)
...+||++| ++|++|+++|..||++.|.++++.+++.|+++. .+.+++.++++. .++.+|+. +.++++||
T Consensus 29 ~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~a~l~~~~~-~~~~~~~l~a~~iv~~~-- 100 (171)
T TIGR03692 29 GNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAAVELAKDWR-TDRYLRRLEAMLIVADK-- 100 (171)
T ss_pred CCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHHHHHHHHHh-hcccccccEEEEEEEcC--
Confidence 346799999 599999999999999999999999999988743 477777777742 22333443 66666543
Q ss_pred CCceEEEEEcCCCceeee--CeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 030109 82 EGKGCVYTYDAVGSYERV--GYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYT 159 (183)
Q Consensus 82 ~g~p~Ly~iD~~G~~~~~--~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~ 159 (183)
++||.+||.|++.+. ++.++||||.+++++||.+|++ ++|+ |++++.+|++.|.+||+.|
T Consensus 101 ---~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~------------~~~s---a~~la~~Av~~A~~rd~~s 162 (171)
T TIGR03692 101 ---ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRN------------TDLS---AEEIAREALKIAADICIYT 162 (171)
T ss_pred ---CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhc------------CCCC---HHHHHHHHHHHHHhhCccC
Confidence 489999999999996 5999999999999999999964 2677 9999999999999999999
Q ss_pred CCcEEEEE
Q 030109 160 GDKLEIVV 167 (183)
Q Consensus 160 g~~i~I~i 167 (183)
|++++|-.
T Consensus 163 g~~i~v~~ 170 (171)
T TIGR03692 163 NHNITIEE 170 (171)
T ss_pred CCCEEEEe
Confidence 99998864
No 48
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=8.8e-08 Score=72.18 Aligned_cols=136 Identities=18% Similarity=0.157 Sum_probs=97.4
Q ss_pred cceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhc-CCCceeeEEEEEEeCCCc
Q 030109 6 YILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKR-FFPYYSFNVLGGLDNEGK 84 (183)
Q Consensus 6 ~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r-~~P~~v~~lvaG~D~~g~ 84 (183)
++|++ +.+++.|++|..+|+..+.+.+..+++.|.-+ +...+..+++-.++-| .|-+-+-++|+ |++
T Consensus 38 vRkl~--~gkvlaGFAGstADaftLfe~fe~kle~~~g~------L~raavelaKdwr~Dk~lr~LEAmllVa--d~~-- 105 (178)
T COG5405 38 VRRLY--NGKVLAGFAGSTADAFTLFERFEAKLEQYQGD------LFRAAVELAKDWRTDKYLRKLEAMLLVA--DKT-- 105 (178)
T ss_pred HHHHc--CCcEEEEecccchhHHHHHHHHHHHHHHccCc------HHHHHHHHHHhhhhhhHHHHHhhheeEe--CCC--
Confidence 34666 66899999999999999999999999887511 1113333333333322 23355666664 554
Q ss_pred eEEEEEcCCCceeee--CeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCc
Q 030109 85 GCVYTYDAVGSYERV--GYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDK 162 (183)
Q Consensus 85 p~Ly~iD~~G~~~~~--~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~ 162 (183)
.++-+...|-+.+. ...|||||..++++..+..++. +++| |.+++.++|..+-+-+..++++
T Consensus 106 -~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~------------~~ls---A~eIa~~sl~iA~eiciyTN~n 169 (178)
T COG5405 106 -HILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMEN------------TELS---AREIAEKSLKIAGDICIYTNHN 169 (178)
T ss_pred -cEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhc------------cCCC---HHHHHHHHHhhhheEEEecCCc
Confidence 47888888988864 4999999999999999988764 3555 5678888998888777777777
Q ss_pred EEEEEEc
Q 030109 163 LEIVVLN 169 (183)
Q Consensus 163 i~I~ii~ 169 (183)
+.|..++
T Consensus 170 i~ve~l~ 176 (178)
T COG5405 170 IVVEELR 176 (178)
T ss_pred EEEEEee
Confidence 7776554
No 49
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=2.7e-05 Score=61.02 Aligned_cols=146 Identities=18% Similarity=0.187 Sum_probs=112.9
Q ss_pred ceEEEecCCHHHHHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHH---hhhc-------CCCceeeEEEEEEeCCC
Q 030109 15 KCVMASSGFQADVKALQKLLAARHLIYQHQH-NKQMSCPGMAQLLSNTL---YYKR-------FFPYYSFNVLGGLDNEG 83 (183)
Q Consensus 15 ~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~-~~~i~~~~la~~is~~l---y~~r-------~~P~~v~~lvaG~D~~g 83 (183)
-+++..+|..|-.|.+.+.+.+..+.-.-.. -..++.-..+.++.... +.+- .--|.|++|++|-=..+
T Consensus 44 vlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~sm~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~ 123 (255)
T COG3484 44 VLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPSMYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGE 123 (255)
T ss_pred EEEEEecCccHHHHHHHHHHHHHhhccchhhhhcchhHHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCC
Confidence 3567889999999999999988886322211 12345556666666655 3221 23578999999976555
Q ss_pred ceEEEEEcCCCceee----eCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 030109 84 KGCVYTYDAVGSYER----VGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYT 159 (183)
Q Consensus 84 ~p~Ly~iD~~G~~~~----~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~ 159 (183)
.|.||.+-|-|++.+ .++.-+|... +-.++|++.+.. +++++||.+.+.-.|...+..+..-
T Consensus 124 pp~Ly~IYpqGNFIqaT~etpf~QiGEtK-YGKPildR~i~~-------------~~pLeea~kcaLvS~DSTlkSNiSV 189 (255)
T COG3484 124 PPRLYLIYPQGNFIQATPETPFLQIGETK-YGKPILDRTITY-------------DTPLEEAAKCALVSFDSTLKSNISV 189 (255)
T ss_pred CceeEEEccCCCeeecCCCCceeEccccc-cCchhhhhhhhc-------------cCCHHHHhhheEEecchhhhccccc
Confidence 689999999999986 3589999765 448999999887 9999999999999999988888777
Q ss_pred CCcEEEEEEcCCCeE
Q 030109 160 GDKLEIVVLNKGGIH 174 (183)
Q Consensus 160 g~~i~I~ii~k~g~~ 174 (183)
|--+++-++.+|...
T Consensus 190 GlPldLl~~e~ds~~ 204 (255)
T COG3484 190 GLPLDLLVYEADSFS 204 (255)
T ss_pred cCCceeEEEecccee
Confidence 888999999998763
No 50
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=87.56 E-value=2.2 Score=33.45 Aligned_cols=50 Identities=10% Similarity=0.143 Sum_probs=42.4
Q ss_pred hhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEcCC
Q 030109 109 TLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKG 171 (183)
Q Consensus 109 ~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~i~I~ii~k~ 171 (183)
+.+...|.++|++ .|+++++.++..++|..+...-+.-+..+++...++.
T Consensus 131 ~ia~~~lkk~~~~-------------k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 131 EIANKELKKYWKP-------------KMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred HHHHHHHHHhcCC-------------CCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 6677888888886 8999999999999999998877777778888877764
No 51
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=79.45 E-value=3.7 Score=29.90 Aligned_cols=38 Identities=29% Similarity=0.363 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCeEEE
Q 030109 135 PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHRE 176 (183)
Q Consensus 135 ~ls~~eA~~l~~~al~~~~~rd~~~g~~i~I~ii~k~g~~~~ 176 (183)
.+|.++|.+++..++..+.++ +..+.|+|++..|....
T Consensus 2 ~l~~~~A~~l~~~a~~~a~~~----g~~v~iaVvd~~G~~~~ 39 (132)
T PF03928_consen 2 SLTLEDAWKLGDAAVEEARER----GLPVSIAVVDAGGHLLA 39 (132)
T ss_dssp EE-HHHHHHHHHHHHHHHHHT----T---EEEEEETTS-EEE
T ss_pred CcCHHHHHHHHHHHHHHHHHh----CCCeEEEEEECCCCEEE
Confidence 589999999999999999876 44689999999997544
No 52
>PRK09732 hypothetical protein; Provisional
Probab=78.24 E-value=9.7 Score=28.17 Aligned_cols=39 Identities=21% Similarity=0.199 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCeEEE
Q 030109 134 TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHRE 176 (183)
Q Consensus 134 ~~ls~~eA~~l~~~al~~~~~rd~~~g~~i~I~ii~k~g~~~~ 176 (183)
..||++.|.+++..++..+.+. +..+.|+|++..|....
T Consensus 5 ~~Ltl~~A~~~~~aA~~~A~~~----g~~v~iaVvD~~G~l~a 43 (134)
T PRK09732 5 VILSQQMASAIIAAGQEEAQKN----NWSVSIAVADDGGHLLA 43 (134)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh----CCCEEEEEEcCCCCEEE
Confidence 3699999999999999888875 56899999999997543
No 53
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=74.47 E-value=4.6 Score=29.92 Aligned_cols=42 Identities=21% Similarity=0.276 Sum_probs=37.3
Q ss_pred EEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHH
Q 030109 89 TYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVD 143 (183)
Q Consensus 89 ~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~ 143 (183)
.+|-+|-....++-+.|-||..+-+-+-..|-. .+++|||.+
T Consensus 72 kvd~~g~I~dakFKTFGCGSAIASSS~aTewvk-------------gkt~dea~k 113 (157)
T KOG3361|consen 72 KVDDSGVIEDAKFKTFGCGSAIASSSLATEWVK-------------GKTLDEALK 113 (157)
T ss_pred EECCCCcEEEeeeeecccchHhhhhHHHHHHHc-------------cccHHHHHh
Confidence 678899999999999999999999998888876 888888864
No 54
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=74.10 E-value=20 Score=26.84 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=34.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCeEEE
Q 030109 133 VTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHRE 176 (183)
Q Consensus 133 ~~~ls~~eA~~l~~~al~~~~~rd~~~g~~i~I~ii~k~g~~~~ 176 (183)
.+.+|+++|.+++..++..+.+. ++.+.|.|++..|-..-
T Consensus 5 ~~~Ls~e~a~~ii~aA~a~a~~~----g~~VtvaVVD~~G~~~a 44 (141)
T COG3193 5 KPVLSLELANKIIAAAVAEAQQL----GVPVTVAVVDAGGHLVA 44 (141)
T ss_pred ccccCHHHHHHHHHHHHHHHHHh----CCceEEEEECCCCCEEE
Confidence 35899999999999998887764 78999999999996543
No 55
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=71.55 E-value=14 Score=30.34 Aligned_cols=120 Identities=18% Similarity=0.215 Sum_probs=70.9
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHh-----hhc--CCCceeeEEEEEEeCCC-----ceEEEEEcCCCcee--e----
Q 030109 37 RHLIYQHQHNKQMSCPGMAQLLSNTLY-----YKR--FFPYYSFNVLGGLDNEG-----KGCVYTYDAVGSYE--R---- 98 (183)
Q Consensus 37 ~~~~~~~~~~~~i~~~~la~~is~~ly-----~~r--~~P~~v~~lvaG~D~~g-----~p~Ly~iD~~G~~~--~---- 98 (183)
+....++.+|.--|-+.|++....+-- .-| .+-..-+.+++-+..-+ .-++|.+ .|++. +
T Consensus 32 e~lEekLYsGeIkteEEL~r~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT--~Ga~aIvel~gs 109 (293)
T COG4079 32 EKLEEKLYSGEIKTEEELARKAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYAT--AGAYAIVELRGS 109 (293)
T ss_pred HHHHHHhhcCccccHHHHHHHHHHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeec--CCceEEEEecCC
Confidence 334445667877788889988877531 111 22232333444333211 1345542 23321 1
Q ss_pred -eCeEEEcCC-------h----hhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCcEEEE
Q 030109 99 -VGYSSQGSG-------S----TLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIV 166 (183)
Q Consensus 99 -~~~~a~G~g-------s----~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~i~I~ 166 (183)
......|.| . +.+..+|.+.|.+ .++++++.++...+|..+...-+.-+..++|.
T Consensus 110 ~vts~~~g~g~aiIv~Gnk~~Ke~aneflk~~l~~-------------k~~lqd~~dal~elfe~vss~tpsVskeydiy 176 (293)
T COG4079 110 EVTSTSQGKGSAIIVFGNKFTKEVANEFLKDNLTK-------------KSKLQDAVDALMELFETVSSKTPSVSKEYDIY 176 (293)
T ss_pred eeEeeecCCCceEEEECcHHHHHHHHHHHHhhccC-------------CCCHHHHHHHHHHHHHHhhcCCCcccceeEEE
Confidence 112333332 2 3456677777776 89999999999999999986656667788888
Q ss_pred EEcCC
Q 030109 167 VLNKG 171 (183)
Q Consensus 167 ii~k~ 171 (183)
.++++
T Consensus 177 ~vs~~ 181 (293)
T COG4079 177 QVSSN 181 (293)
T ss_pred EecCC
Confidence 88764
No 56
>PRK02487 hypothetical protein; Provisional
Probab=64.97 E-value=27 Score=26.50 Aligned_cols=37 Identities=22% Similarity=0.189 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCeE
Q 030109 133 VTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIH 174 (183)
Q Consensus 133 ~~~ls~~eA~~l~~~al~~~~~rd~~~g~~i~I~ii~k~g~~ 174 (183)
.+.+|.++|.+++..++..+.++ +..+.|.|++ .|-.
T Consensus 20 ~~~l~~~~A~~l~~~a~~~A~~~----g~~v~IaVv~-~G~~ 56 (163)
T PRK02487 20 FPHFDNDDAWQLGSLLVELARER----GLPIAIDITL-NGQP 56 (163)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEE-CCcE
Confidence 35899999999999999888764 4689999995 6643
No 57
>COG1754 Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only]
Probab=54.38 E-value=15 Score=30.66 Aligned_cols=73 Identities=15% Similarity=0.200 Sum_probs=46.8
Q ss_pred EEEEeC-CCceEEEEEcCCCceeeeCeEEEcCC-hhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 030109 76 LGGLDN-EGKGCVYTYDAVGSYERVGYSSQGSG-STLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASAT 153 (183)
Q Consensus 76 vaG~D~-~g~p~Ly~iD~~G~~~~~~~~a~G~g-s~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~ 153 (183)
+.|.|+ +|.+-....-..|-|... ..|.. -.....-|-+.|++ .++|+|+|++|...=-...
T Consensus 77 ~LG~DP~tG~eI~~k~GryGPYVq~---~lg~~~~kpkraSLpkg~~~------------e~ItLE~AL~LLsLPR~iG- 140 (298)
T COG1754 77 VLGIDPETGEEIYLKNGRYGPYVQE---QLGDPKPKPKRASLPKGWKP------------ETITLEKALKLLSLPRVIG- 140 (298)
T ss_pred ccccCCCCCceeEEeccCCCceeee---ecCCCCCCcccccCCCCCCh------------hhCcHHHHHHHHcCchhhC-
Confidence 458896 465667778888887765 45655 55556666677776 5899999998865432222
Q ss_pred hhccccCCcEEE
Q 030109 154 ERDIYTGDKLEI 165 (183)
Q Consensus 154 ~rd~~~g~~i~I 165 (183)
-+..++..|.+
T Consensus 141 -~hp~sge~I~a 151 (298)
T COG1754 141 -KHPDSGEEISA 151 (298)
T ss_pred -CCCCCCcEEEe
Confidence 22345555543
No 58
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=52.28 E-value=30 Score=27.35 Aligned_cols=41 Identities=20% Similarity=0.296 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCeEEEeee
Q 030109 139 AEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHREYME 179 (183)
Q Consensus 139 ~eA~~l~~~al~~~~~rd~~~g~~i~I~ii~k~g~~~~~~~ 179 (183)
-||++..++.|...+..|+.....+++.||+-+|.-....|
T Consensus 21 IealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~p 61 (207)
T COG4245 21 IEALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQP 61 (207)
T ss_pred HHHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEec
Confidence 36889999999999999999999999999999986544443
No 59
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=45.38 E-value=50 Score=23.29 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCC-CCCHHHH
Q 030109 27 VKALQKLLAARHLIYQHQHNK-QMSCPGM 54 (183)
Q Consensus 27 ~~~l~~~~r~~~~~~~~~~~~-~i~~~~l 54 (183)
+..+++.+..+++.|++.+++ +++.+.|
T Consensus 49 c~A~vkmV~sQ~~~YeLdh~~~~pSl~~L 77 (107)
T COG4537 49 CEAVVKMVESQAEAYELDHNRLPPSLSDL 77 (107)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence 467889999999999999987 6666554
No 60
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=40.11 E-value=47 Score=21.29 Aligned_cols=31 Identities=6% Similarity=0.059 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 030109 31 QKLLAARHLIYQHQHNKQMSCPGMAQLLSNT 61 (183)
Q Consensus 31 ~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ 61 (183)
++.+++.........|++++.+.+|..+.--
T Consensus 3 l~~i~~a~~~L~~~lgr~Pt~eEiA~~lgis 33 (78)
T PF04539_consen 3 LRKIERARRELEQELGREPTDEEIAEELGIS 33 (78)
T ss_dssp HHHHHHHHHHHHHHHSS--BHHHHHHHHTS-
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHccc
Confidence 4555666666777889999999999887643
No 61
>PF01458 UPF0051: Uncharacterized protein family (UPF0051); InterPro: IPR000825 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents SufB and SufD proteins that form part of the SufBCD complex in the SUF system. No specific functions have been assigned to these proteins.; GO: 0016226 iron-sulfur cluster assembly; PDB: 1VH4_B 2ZU0_A 4DN7_A.
Probab=39.87 E-value=90 Score=24.72 Aligned_cols=48 Identities=21% Similarity=0.118 Sum_probs=34.6
Q ss_pred ceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 030109 84 KGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCF 149 (183)
Q Consensus 84 ~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al 149 (183)
.|.|-. +..-. .-.+.+++|.=.+..+=+|..+ .++.+||.+|+.++|
T Consensus 182 ~P~LeI-~~~dV-~a~H~AtvG~idee~LFYL~SR----------------Gl~~~eA~~Liv~gF 229 (229)
T PF01458_consen 182 IPELEI-DEDDV-KASHGATVGQIDEEQLFYLMSR----------------GLSEEEARKLIVKGF 229 (229)
T ss_dssp EEEEEE--SSSE-EEEEEEEEEES-HHHHHHHHCT----------------T--HHHHHHHHHHHH
T ss_pred EEhHhc-ccCCc-EEEEeeEeecCCHHHHHHHHHc----------------CCCHHHHHHHHHhhC
Confidence 477744 44333 4457999999999999999974 899999999998875
No 62
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=37.60 E-value=71 Score=21.37 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=20.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCeEE
Q 030109 135 PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHR 175 (183)
Q Consensus 135 ~ls~~eA~~l~~~al~~~~~rd~~~g~~i~I~ii~k~g~~~ 175 (183)
.+|.+||...++++|..... ++.--+++++.+|+..
T Consensus 34 ~ls~eea~~~a~~~l~~~r~-----~~~gY~fi~d~~g~~l 69 (95)
T PF08269_consen 34 KLSEEEAQQQAREALRALRY-----GGDGYFFIYDMDGVVL 69 (95)
T ss_dssp -----TTHHHHHHHHHH--S-----BTTB--EEE-TTSBEE
T ss_pred CccHHHHHHHHHHHHhcccc-----CCCCeEEEEeCCCeEE
Confidence 69999999999999977665 2344678889999863
No 63
>PRK02260 S-ribosylhomocysteinase; Provisional
Probab=36.44 E-value=1.4e+02 Score=22.74 Aligned_cols=73 Identities=10% Similarity=-0.006 Sum_probs=50.1
Q ss_pred ceEEEEEcCCCceeeeCeEEEc-CChhhhHHHHHcccCCC--CC----CCCCCC-CCCCCCCHHHHHHHHHHHHHHHHhh
Q 030109 84 KGCVYTYDAVGSYERVGYSSQG-SGSTLIMPFLDNQLKSP--SP----LLLPAQ-DAVTPLSEAEAVDLVKTCFASATER 155 (183)
Q Consensus 84 ~p~Ly~iD~~G~~~~~~~~a~G-~gs~~~~~~Le~~~~~~--~~----~~~~~~-~~~~~ls~~eA~~l~~~al~~~~~r 155 (183)
+-.+-.+-|-|......-...| ..++.+...+++.++.- ++ .+.+.+ .++.+.|++.|.+.|++-|...+..
T Consensus 71 ~~~iI~~sPMGCrTGFYli~~g~~~~~~i~~l~~~~l~~i~~~~~eVPga~~~~CGny~~hsL~~Ak~~a~~~L~~~~~~ 150 (158)
T PRK02260 71 GVEIIDISPMGCRTGFYLILIGTPDEEDVADALKATLEDVLDDQEEVPGANEYQCGNYKDHSLEGAKEIARKILDQGISV 150 (158)
T ss_pred CceEEEECCCccccccEEEEeCCCCHHHHHHHHHHHHHHHHhhcCCCCCCChhcCCChhhCCHHHHHHHHHHHHHhhccc
Confidence 3557777889988888777788 77777777777644431 11 111111 4456899999999999999877665
Q ss_pred c
Q 030109 156 D 156 (183)
Q Consensus 156 d 156 (183)
+
T Consensus 151 ~ 151 (158)
T PRK02260 151 N 151 (158)
T ss_pred C
Confidence 4
No 64
>cd04513 Glycosylasparaginase Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme.
Probab=35.00 E-value=1.7e+02 Score=24.19 Aligned_cols=57 Identities=19% Similarity=0.145 Sum_probs=38.8
Q ss_pred eEEEcCChhhhHHHHHc----ccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCe
Q 030109 101 YSSQGSGSTLIMPFLDN----QLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGI 173 (183)
Q Consensus 101 ~~a~G~gs~~~~~~Le~----~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~i~I~ii~k~g~ 173 (183)
..++|.|..++...+-. ..+. .++++||.+.+++-+..... ..+...-|..|+++|-
T Consensus 187 ~s~TG~GE~iir~~~A~~v~~~m~~-------------G~~~~~A~~~~i~~~~~~~~---~~~~~gg~Iavd~~G~ 247 (263)
T cd04513 187 AAATGDGEEMMRFLPSFQAVEYMRQ-------------GMSPKEACLEAIKRIAKHFD---GPDFEGAVVALNKKGE 247 (263)
T ss_pred EEeeccHHHHHHHHHHHHHHHHHHc-------------CCCHHHHHHHHHHHHHHHcC---cCCCcEEEEEEcCCCC
Confidence 56899999888766653 2332 68999998887766543321 2344567888899885
No 65
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=34.84 E-value=2e+02 Score=23.22 Aligned_cols=28 Identities=11% Similarity=-0.053 Sum_probs=21.7
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHH
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQ 31 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~ 31 (183)
-..+|.|..-|+|+|.+.|..-..-.|.
T Consensus 65 ~l~pR~F~~~DdIfCiF~G~L~Nl~~L~ 92 (228)
T PF12481_consen 65 SLHPRLFAGVDDIFCIFLGSLENLCSLR 92 (228)
T ss_pred ccccccccccCCEEEEEecchhhHHHHH
Confidence 4567999999999999999865544443
No 66
>PF14191 YodL: YodL-like
Probab=33.71 E-value=46 Score=23.45 Aligned_cols=59 Identities=14% Similarity=0.112 Sum_probs=38.9
Q ss_pred HHHHHHHhcCCCCC-HHHHHHHHHHHHh----hhcCCCceeeEEEEEEeCCCceEEEEEcCCCce
Q 030109 37 RHLIYQHQHNKQMS-CPGMAQLLSNTLY----YKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSY 96 (183)
Q Consensus 37 ~~~~~~~~~~~~i~-~~~la~~is~~ly----~~r~~P~~v~~lvaG~D~~g~p~Ly~iD~~G~~ 96 (183)
....|+..+..++. .+.|-.+.....- ..+.+++.+|=||. ++.+|+-.-|.+|+.|..
T Consensus 34 ~~~~Y~~VY~~~l~~~~~Le~iy~~FN~~~P~df~GhsLSvSDVV~-l~~~g~~~~yYvDs~GF~ 97 (103)
T PF14191_consen 34 DPENYRLVYDGELDHTETLEDIYERFNVDHPEDFKGHSLSVSDVVE-LYDGGKSSFYYVDSFGFK 97 (103)
T ss_pred ChHHceEEEEEecCCCCCHHHHHHHhCcCCCCCCCCCccChheEEE-EEcCCceEEEEECCCCCe
Confidence 35667777766666 4455554444331 12357899998887 555777889999988753
No 67
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=33.33 E-value=1.1e+02 Score=23.48 Aligned_cols=44 Identities=23% Similarity=0.156 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhhc------CCCc----eeeEEEEEEeCCCceEEEEEcCCCce
Q 030109 52 PGMAQLLSNTLYYKR------FFPY----YSFNVLGGLDNEGKGCVYTYDAVGSY 96 (183)
Q Consensus 52 ~~la~~is~~ly~~r------~~P~----~v~~lvaG~D~~g~p~Ly~iD~~G~~ 96 (183)
...++.++++|.++. ..|- +=..||.|+|.++ ..|...||-+..
T Consensus 95 ~~t~e~~~~LL~~yGPLwv~~~~P~~~~~~H~~ViTGI~~dg-~~i~~~DP~~gP 148 (166)
T PF12385_consen 95 SYTAEGLANLLREYGPLWVAWEAPGDSWVAHASVITGIDGDG-DSIHVHDPEQGP 148 (166)
T ss_pred ccCHHHHHHHHHHcCCeEEEecCCCCcceeeEEEEEeecCCC-CeEEecCcccCC
Confidence 345566666665443 1232 1345678998876 677777887654
No 68
>cd04702 ASRGL1_like ASRGL1_like domains, a subfamily of the L-Asparaginase type 2-like enzymes. The wider family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue. ASRGL1, or asparaginase-like 1, has been cloned from mammalian testis cDNA libraries. It has been identified as a sperm antigen that may induce the production of autoantibodies following obstruction of the male reproductive tract, e.g. vasectomy.
Probab=33.23 E-value=1.8e+02 Score=24.13 Aligned_cols=54 Identities=20% Similarity=0.267 Sum_probs=36.8
Q ss_pred eEEEcCChhhhHHHHHc----ccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCe
Q 030109 101 YSSQGSGSTLIMPFLDN----QLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGI 173 (183)
Q Consensus 101 ~~a~G~gs~~~~~~Le~----~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~i~I~ii~k~g~ 173 (183)
.+++|.|..++...+-. ..+. .++++||.+.+++-+.... +...-+..|+++|-
T Consensus 179 ~s~TG~GE~iir~~~a~~v~~~m~~-------------g~s~~eA~~~~i~~~~~~~------~g~gG~Iavd~~G~ 236 (261)
T cd04702 179 VSTTGHGESIMKVVLARLILDHMEQ-------------GGSAQEAADKAIEYMTERV------KGTGGAIVLDSSGE 236 (261)
T ss_pred EEeeccHHHHHHHHHHHHHHHHHHc-------------CCCHHHHHHHHHHHHHHHc------CCceEEEEEeCCCC
Confidence 77899999888776654 3333 6899999887776654322 23456677788874
No 69
>PF04485 NblA: Phycobilisome degradation protein nblA ; InterPro: IPR007574 In the cyanobacterium Synechococcus species PCC 7942 (P35087 from SWISSPROT), nblA triggers degradation of light-harvesting phycobiliproteins in response to deprivation nutrients including nitrogen, phosphorus and sulphur. The mechanism of nblA function is not known, but it has been hypothesised that nblA may act by disrupting phycobilisome structure, activating a protease or tagging phycobiliproteins for proteolysis. Members of this family have also been identified in the chloroplasts of some red algae.; PDB: 3CS5_D 1OJH_L 2QDO_B 2Q8V_A.
Probab=32.49 E-value=98 Score=19.13 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=18.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhhc
Q 030109 135 PLSEAEAVDLVKTCFASATERD 156 (183)
Q Consensus 135 ~ls~~eA~~l~~~al~~~~~rd 156 (183)
+||.++|.++.++.++...-+|
T Consensus 21 ~ls~Eqaq~~Lve~~rqmmike 42 (53)
T PF04485_consen 21 KLSREQAQELLVELYRQMMIKE 42 (53)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999998877665
No 70
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=32.31 E-value=56 Score=19.96 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=20.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEcC
Q 030109 135 PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNK 170 (183)
Q Consensus 135 ~ls~~eA~~l~~~al~~~~~rd~~~g~~i~I~ii~k 170 (183)
.-|+|||++.|.+-|.. +-+.+++-||++
T Consensus 4 gkt~eeAi~~A~~~l~~-------~~~~~~~eVi~~ 32 (52)
T PF14804_consen 4 GKTVEEAIEKALKELGV-------PREELEYEVIEE 32 (52)
T ss_dssp ESSHHHHHHHHHHHTT---------GGGEEEEEEE-
T ss_pred ECCHHHHHHHHHHHhCC-------ChHHEEEEEEEc
Confidence 45899999988877642 345788888886
No 71
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=31.80 E-value=2.8e+02 Score=23.45 Aligned_cols=94 Identities=16% Similarity=0.127 Sum_probs=55.4
Q ss_pred hcCCCCCHHHHHHHHHHHHhhhcCCCceeeEEEEEEeCCC--------------ceEEEEEcCCCceeee----CeEEEc
Q 030109 44 QHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEG--------------KGCVYTYDAVGSYERV----GYSSQG 105 (183)
Q Consensus 44 ~~~~~i~~~~la~~is~~ly~~r~~P~~v~~lvaG~D~~g--------------~p~Ly~iD~~G~~~~~----~~~a~G 105 (183)
+++.+-+++.=-+-.+..++.....+ +..+|+|+-..| .-+++-+||.|+..-. +...-|
T Consensus 144 Qf~NpaN~~aH~~tT~~EI~~~~~g~--~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~g~~~i~G 221 (300)
T COG0031 144 QFENPANPEAHYETTGPEIWQQTDGK--VDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGEGPHKIEG 221 (300)
T ss_pred hcCCCccHHHHHhhhHHHHHHHhCCC--CCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCCCCcccCC
Confidence 66777777765555666665543223 788899986432 2589999999986653 333444
Q ss_pred CChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 030109 106 SGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCF 149 (183)
Q Consensus 106 ~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al 149 (183)
-|..++-..++.. ..|.....+.+||+..+++..
T Consensus 222 IG~~~ip~~~~~~----------~iD~v~~V~d~~A~~~~r~La 255 (300)
T COG0031 222 IGAGFVPENLDLD----------LIDEVIRVSDEEAIATARRLA 255 (300)
T ss_pred CCCCcCCcccccc----------cCceEEEECHHHHHHHHHHHH
Confidence 4443432222211 112233578889988777644
No 72
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.77 E-value=81 Score=19.68 Aligned_cols=37 Identities=14% Similarity=0.153 Sum_probs=27.6
Q ss_pred hhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccc
Q 030109 109 TLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIY 158 (183)
Q Consensus 109 ~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~ 158 (183)
+.+...+.+...+ .||--||+.+..+.|+.-...+..
T Consensus 14 Q~AVE~Iq~lMae-------------GmSsGEAIa~VA~elRe~hk~~~~ 50 (60)
T COG3140 14 QKAVERIQELMAE-------------GMSSGEAIALVAQELRENHKGENR 50 (60)
T ss_pred HHHHHHHHHHHHc-------------cccchhHHHHHHHHHHHHhccccc
Confidence 3445556666665 899999999999999988776543
No 73
>cd04512 Ntn_Asparaginase_2_like Ntn-hydrolase superfamily, L-Asparaginase type 2-like enzymes. This family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoprotein. Taspase1 catalyzes the cleavage of the Mix Lineage Leukemia (MLL) nuclear protein and transcription factor TFIIA. L-Asparaginase type 2 hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzymes of this family undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.
Probab=30.50 E-value=2e+02 Score=23.55 Aligned_cols=54 Identities=17% Similarity=0.300 Sum_probs=37.4
Q ss_pred eEEEcCChhhhHHHHHc----ccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCe
Q 030109 101 YSSQGSGSTLIMPFLDN----QLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGI 173 (183)
Q Consensus 101 ~~a~G~gs~~~~~~Le~----~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~i~I~ii~k~g~ 173 (183)
.+++|.|...++..+-. ..+. .+++++|.+.+++-+... .+...-+..++++|.
T Consensus 176 ~s~TG~GE~iir~~~a~~v~~~~~~-------------g~~~~~A~~~~i~~~~~~------~~~~~G~Ia~d~~G~ 233 (248)
T cd04512 176 ASTTGHGEAIIRTVLARRVVELMEQ-------------GMAAQAAAETAVEELGSL------KGGQGGVIAVDSKGE 233 (248)
T ss_pred EEeeecHHHHHHHHHHHHHHHHHHc-------------CCCHHHHHHHHHHHHHhh------cCCeEEEEEEeCCCC
Confidence 77899999888776654 3333 689999988766655432 233456788888885
No 74
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=30.04 E-value=98 Score=25.58 Aligned_cols=39 Identities=31% Similarity=0.430 Sum_probs=27.0
Q ss_pred CCCceeeEE--EEEEeCCCceEEEEEcCCCceeee---CeEEEcCChhh
Q 030109 67 FFPYYSFNV--LGGLDNEGKGCVYTYDAVGSYERV---GYSSQGSGSTL 110 (183)
Q Consensus 67 ~~P~~v~~l--vaG~D~~g~p~Ly~iD~~G~~~~~---~~~a~G~gs~~ 110 (183)
+.|= +.+| |+|-| ..+..+|..|..... +.||.|+|+.+
T Consensus 94 ~~p~-~~tIiDIGGQD----~K~I~~~~~G~v~~f~MNdkCAAGTG~FL 137 (262)
T TIGR02261 94 LNPE-ARAVLDIGALH----GRAIRMDERGKVEAYKMTSQCASGSGQFL 137 (262)
T ss_pred HCCC-CCEEEEeCCCc----eEEEEEcCCCcEeeEEecCcccccccHHH
Confidence 3463 3343 67766 357788999998763 59999999743
No 75
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=29.97 E-value=49 Score=18.41 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=7.7
Q ss_pred EEcCCCceeeeCeEEEc
Q 030109 89 TYDAVGSYERVGYSSQG 105 (183)
Q Consensus 89 ~iD~~G~~~~~~~~a~G 105 (183)
.+||.|....+.|-+.|
T Consensus 10 ~~d~~G~~~~y~YD~~g 26 (38)
T PF05593_consen 10 VTDPDGRTTRYTYDAAG 26 (38)
T ss_pred EEcCCCCEEEEEECCCC
Confidence 34455555444444333
No 76
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=29.96 E-value=68 Score=19.28 Aligned_cols=33 Identities=21% Similarity=0.144 Sum_probs=25.4
Q ss_pred EEEcCCCceeeeCeEEEcCChhhhHHHHHcccC
Q 030109 88 YTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLK 120 (183)
Q Consensus 88 y~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~ 120 (183)
|.|+|+|.+...---..|+.+..+...||+..-
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~LG 35 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEALG 35 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHhC
Confidence 678899998877677778888888887776543
No 77
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=28.90 E-value=34 Score=20.20 Aligned_cols=31 Identities=13% Similarity=0.089 Sum_probs=20.1
Q ss_pred EcCChhhhHHHHHccc-CCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 030109 104 QGSGSTLIMPFLDNQL-KSPSPLLLPAQDAVTPLSEAEAVDLVKT 147 (183)
Q Consensus 104 ~G~gs~~~~~~Le~~~-~~~~~~~~~~~~~~~~ls~~eA~~l~~~ 147 (183)
-|.....+...+++.. .+ +++.++.++.+.+
T Consensus 13 LGy~~~e~~~av~~~~~~~-------------~~~~e~~ik~aLk 44 (47)
T PF07499_consen 13 LGYSKAEAQKAVSKLLEKP-------------GMDVEELIKQALK 44 (47)
T ss_dssp TTS-HHHHHHHHHHHHHST-------------TS-HHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHhhcCC-------------CCCHHHHHHHHHh
Confidence 4677777777777655 43 7888887776654
No 78
>COG4728 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.42 E-value=40 Score=23.90 Aligned_cols=97 Identities=12% Similarity=0.047 Sum_probs=54.1
Q ss_pred eEEecCceEEEecCCHHHHHHHHHHHHHH---HHHHHHhcCCCCCHHHHHH--------HHHHHHhhhc---CCCceeeE
Q 030109 9 TSCRADKCVMASSGFQADVKALQKLLAAR---HLIYQHQHNKQMSCPGMAQ--------LLSNTLYYKR---FFPYYSFN 74 (183)
Q Consensus 9 i~~I~~~i~~~~sG~~aD~~~l~~~~r~~---~~~~~~~~~~~i~~~~la~--------~is~~ly~~r---~~P~~v~~ 74 (183)
++.|.+..++.+.|..+|...+.+.++.. +..|++..|..-.+=..|. .+=+-+|... .||+.+..
T Consensus 10 ~~~i~~~~gl~~v~~~~~~s~~~~k~~~~~~~A~~YRHYKG~~Y~vL~~A~~se~~e~~vvYqA~yGe~~~WVRP~~MF~ 89 (124)
T COG4728 10 IFKIKDKLGLTFVSKSADMSIQVEKAERLIKKASYYRHYKGNYYKVLYIAENSEDKEKVVVYQAMYGEKKVWVRPFKMFI 89 (124)
T ss_pred EEEEhhhcCcEEEEecchhHHHHHHHHHhhccchheEeecCCcEEEEEEEecCCCceeEEEehhhcCcceEEechHHHHH
Confidence 68899999999999999888888877765 4556554443221111110 1112223211 36665433
Q ss_pred EEEEEeCCCceEEEEEcCCCceeeeCeEEEc
Q 030109 75 VLGGLDNEGKGCVYTYDAVGSYERVGYSSQG 105 (183)
Q Consensus 75 lvaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G 105 (183)
=-.-.|-+-.|+.-.+||.........++.|
T Consensus 90 E~VEVDGeqVPRF~~is~~~~~~g~~~~~~~ 120 (124)
T COG4728 90 EKVEVDGEQVPRFMSISELENQFGTSVVASW 120 (124)
T ss_pred HHHhcccceeeeeeecChhcccccceeccCc
Confidence 3333454445777777776665544444433
No 79
>TIGR01981 sufD FeS assembly protein SufD, group 1. This protein, SufD, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. SufB and SufD are homologous. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component.
Probab=26.63 E-value=2.1e+02 Score=24.60 Aligned_cols=52 Identities=19% Similarity=0.118 Sum_probs=40.8
Q ss_pred CceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 030109 83 GKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASA 152 (183)
Q Consensus 83 g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~ 152 (183)
..|.|- ++..-.. -.+.+++|.=....+-+|+.+ .++.+||..++.++|..-
T Consensus 301 t~P~Le-I~adDV~-~sHgATvG~ldee~LFYL~SR----------------Gi~~~eA~~llv~gF~~~ 352 (366)
T TIGR01981 301 TKPILE-IDADDVK-ASHGATVGQIDDEQLFYLRSR----------------GIDEEEARRLLIRGFLGE 352 (366)
T ss_pred cCceEE-EecCCce-EecceeecCCCHHHHHHHHHc----------------CCCHHHHHHHHHHHHHHH
Confidence 468883 3444433 447999999999999999974 899999999999997544
No 80
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=26.58 E-value=70 Score=18.60 Aligned_cols=18 Identities=17% Similarity=0.019 Sum_probs=13.1
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 030109 136 LSEAEAVDLVKTCFASAT 153 (183)
Q Consensus 136 ls~~eA~~l~~~al~~~~ 153 (183)
-|++||++.+++|+...+
T Consensus 29 ~t~eea~~~~~eal~~~l 46 (48)
T PF03681_consen 29 DTLEEALENAKEALELWL 46 (48)
T ss_dssp SSHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 477888888888876544
No 81
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=26.51 E-value=1.4e+02 Score=25.12 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=23.6
Q ss_pred EEEEeCCCceEEEEEcCCCceeee---CeEEEcCChhh
Q 030109 76 LGGLDNEGKGCVYTYDAVGSYERV---GYSSQGSGSTL 110 (183)
Q Consensus 76 vaG~D~~g~p~Ly~iD~~G~~~~~---~~~a~G~gs~~ 110 (183)
|+|-| ..+..+|..|..... +.||.|+|+.+
T Consensus 132 IGGQD----sK~I~~d~~G~v~dF~MNdkCAAGTGrFL 165 (293)
T TIGR03192 132 MGGQD----CKAIHCDEKGKVTNFLMNDKCAAGTGRGM 165 (293)
T ss_pred eCCCc----eEEEEEcCCCcEeeeeecCcccccccHHH
Confidence 67776 357778999987663 59999999743
No 82
>PF11773 PulG: Type II secretory pathway pseudopilin ; InterPro: IPR021749 The secreton (type II secretion) and type IV pilus biogenesis branches of the general secretory pathway in Gram-negative bacteria share many features that suggest a common evolutionary origin. Five components of the secreton, the pseudopilins, are similar to subunits of type IV pili. Pseudopilin PulG is one of the secreton pseudopilins, and is found to assemble into pilus-like bundles []. PulG interacts with proteins H, I and J within the multi-protein complex as well as blocking extracellular secretion and reducing the amount of PulE protein as well as the amounts of PulL, PulM, PulC and PulD when G is over-expressed []. In Klebsiella the pilus-like structure is composed largely of PulG [].
Probab=26.48 E-value=1e+02 Score=20.88 Aligned_cols=36 Identities=11% Similarity=0.238 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEcCCC
Q 030109 135 PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGG 172 (183)
Q Consensus 135 ~ls~~eA~~l~~~al~~~~~rd~~~g~~i~I~ii~k~g 172 (183)
.+-.+|++.+|.-|+.+.... .+-++++|.+...++
T Consensus 33 ~l~qqEvLnvA~MAvQT~Q~~--L~lNGv~V~v~~~~~ 68 (82)
T PF11773_consen 33 ELQQQEVLNVAQMAVQTGQDH--LSLNGVEVQVERTQK 68 (82)
T ss_pred HHHHHHHHHHHHHHHHhCcce--EEEcCeEEEEEEcCC
Confidence 456789999999999876654 667889999987654
No 83
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=24.82 E-value=1.3e+02 Score=19.15 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=13.7
Q ss_pred HHHHHHhcCCCCCHHHHHHHHH
Q 030109 38 HLIYQHQHNKQMSCPGMAQLLS 59 (183)
Q Consensus 38 ~~~~~~~~~~~i~~~~la~~is 59 (183)
+..|...+|.++|++.+++.+.
T Consensus 15 I~~~~~~~G~~Pt~rEIa~~~g 36 (65)
T PF01726_consen 15 IREYIEENGYPPTVREIAEALG 36 (65)
T ss_dssp HHHHHHHHSS---HHHHHHHHT
T ss_pred HHHHHHHcCCCCCHHHHHHHhC
Confidence 3445556899999999988765
No 84
>PF10632 He_PIG_assoc: He_PIG associated, NEW1 domain of bacterial glycohydrolase; InterPro: IPR019599 This domain has been named NEW1 but its actual function is not known. It is found on proteins which are bacterial galactosidases []. The domain is associated with IPR008009 from INTERPRO, a putative Ig-containing domain.
Probab=23.68 E-value=96 Score=16.68 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=15.9
Q ss_pred eEEEEEEeCCCceEEEEEcCCCc
Q 030109 73 FNVLGGLDNEGKGCVYTYDAVGS 95 (183)
Q Consensus 73 ~~lvaG~D~~g~p~Ly~iD~~G~ 95 (183)
+..|-|.-+ |.|.||.+-.+|.
T Consensus 5 ~~~v~G~rP-g~pfl~~IpatG~ 26 (29)
T PF10632_consen 5 SPRVFGARP-GSPFLFTIPATGE 26 (29)
T ss_pred cCcEEcccC-CCcEEEEeeccCc
Confidence 345667766 4599999988874
No 85
>PF01242 PTPS: 6-pyruvoyl tetrahydropterin synthase; InterPro: IPR007115 The complex organic chemistry involved in the transformation of GTP to tetrahydrobiopterin is catalysed by only three enzymes: GTP cyclohydrolase I, 6-pyruvoyltetrahydropterin synthase and sepiapterin reductase. Tetrahydrobiopterin is the cofactor for several aromatic amino acid monooxygenases and the nitric oxide synthases. 6-Pyruvoyl tetrahydropterin synthase (PTPS) [] is a Zn-dependent metalloprotein, transforms dihydroneopterin triphosphate into 6-pyruvoyltetrahydropterin in the presence of Mg(II) and for which the crystal structure is known. The enzyme is a homohexameric, composed of a dimer of trimers. A transition metal binding site formed by the three histidine residues 23, 48 and 50 is present in each subunit, and bound Zn(II) is responsible for the enzymatic activity. Site-directed mutagenesis of each of these three histidine residues results in a complete loss of metal binding and enzymatic activity [, ]. The function of the bacterial branch of the sequence lineage appears not to have been established.; GO: 0003874 6-pyruvoyltetrahydropterin synthase activity, 0046872 metal ion binding, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 3QNA_E 3QN9_A 3QN0_B 1Y13_C 3D7J_A 3I2B_J 2OBA_D 3M0N_A 2A0S_A 3LZE_A ....
Probab=22.91 E-value=1.3e+02 Score=21.28 Aligned_cols=44 Identities=16% Similarity=0.199 Sum_probs=28.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHhcC---------C-CCCHHHHHHHHHHHHhh
Q 030109 21 SGFQADVKALQKLLAARHLIYQHQHN---------K-QMSCPGMAQLLSNTLYY 64 (183)
Q Consensus 21 sG~~aD~~~l~~~~r~~~~~~~~~~~---------~-~i~~~~la~~is~~ly~ 64 (183)
.|..-|+..+.+.++.-...+...+- . .+|++.+|.+|...+..
T Consensus 43 ~g~v~DF~~lk~~~~~i~~~lDh~~Ln~~~~~~~~~~~pT~E~lA~~i~~~l~~ 96 (123)
T PF01242_consen 43 DGMVVDFGDLKKIIKEIDDQLDHKFLNEDDPEFDDINNPTAENLARWIFERLKE 96 (123)
T ss_dssp TSSSS-HHHHHHHHHHHHHHHTTEEGGHHSGCGCSSTS--HHHHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHHHhCcccccCCChhhhccCCCCHHHHHHHHHHHHHH
Confidence 57777888888888875554443221 1 27899999999998844
No 86
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=22.55 E-value=75 Score=28.37 Aligned_cols=63 Identities=19% Similarity=0.145 Sum_probs=43.3
Q ss_pred eeEEEEEEeCCCceEEEEEcCCCceee---eCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 030109 72 SFNVLGGLDNEGKGCVYTYDAVGSYER---VGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTC 148 (183)
Q Consensus 72 v~~lvaG~D~~g~p~Ly~iD~~G~~~~---~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~a 148 (183)
+-+|++|.|+.+ . +++.....+ .....+|.....+...|++.-.+ -...-++++|+..+.+.
T Consensus 346 v~lI~GG~~Kg~-d----f~~L~~~~~~~~~~~~~~G~~~~~i~~~l~~~~~~----------~~~~~~le~Av~~a~~~ 410 (448)
T COG0771 346 VILIAGGDDKGA-D----FSPLAEILAKVIKKLVLIGEDAEKIAAALKEAGPS----------LVICETLEEAVQLAREL 410 (448)
T ss_pred EEEEECCCCCCC-C----hhHHHHHhhhcceEEEEeCCCHHHHHHHHHhcCCc----------eeecCcHHHHHHHHHHh
Confidence 778899998754 2 345444443 34889999999999999876221 01267888888887665
Q ss_pred H
Q 030109 149 F 149 (183)
Q Consensus 149 l 149 (183)
.
T Consensus 411 a 411 (448)
T COG0771 411 A 411 (448)
T ss_pred h
Confidence 3
No 87
>PRK11508 sulfur transfer protein TusE; Provisional
Probab=21.54 E-value=2e+02 Score=20.43 Aligned_cols=34 Identities=6% Similarity=0.167 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 030109 25 ADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTL 62 (183)
Q Consensus 25 aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~l 62 (183)
.|--.+++++|. |..+++..++++.+++.+...+
T Consensus 41 ~~HW~VI~~lR~----~y~e~~~~P~~R~l~K~~~~~~ 74 (109)
T PRK11508 41 PEHWEVVRFVRD----FYLEFNTSPAIRMLVKAMANKF 74 (109)
T ss_pred HHHHHHHHHHHH----HHHHHCCCCcHHHHHHHHHHHh
Confidence 344446666655 4456789999999999887543
No 88
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=21.52 E-value=1.7e+02 Score=26.04 Aligned_cols=31 Identities=29% Similarity=0.354 Sum_probs=23.2
Q ss_pred EEEEeCCCceEEEEEcCCCceee---eCeEEEcCChhh
Q 030109 76 LGGLDNEGKGCVYTYDAVGSYER---VGYSSQGSGSTL 110 (183)
Q Consensus 76 vaG~D~~g~p~Ly~iD~~G~~~~---~~~~a~G~gs~~ 110 (183)
|+|-| .....+|..|.+.. .+.||.|+|+.+
T Consensus 274 IGGQD----sK~I~ld~~G~V~dF~MNDKCAAGTGrFL 307 (432)
T TIGR02259 274 IGGQD----TKGIQIDDHGIVENFQMNDRCAAGCGRYL 307 (432)
T ss_pred eCCCc----eEEEEEcCCCcEeeeeecCcccccchHHH
Confidence 67765 34778899998764 369999999743
No 89
>PF07104 DUF1366: Protein of unknown function (DUF1366); InterPro: IPR009796 This entry is represented by Streptococcus phage 7201, Orf40. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Streptococcus thermophilus bacteriophage proteins of around 130 residues in length. One of the sequences in this family, from phage Sfi11 (O80186 from SWISSPROT) is known as Gp149. The function of this family is unknown.
Probab=21.20 E-value=1.2e+02 Score=21.89 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=25.6
Q ss_pred EcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 030109 90 YDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASA 152 (183)
Q Consensus 90 iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~ 152 (183)
.|++|+....+..-.|.....+--.|...+ .+.|-.|.++++.+.+...
T Consensus 11 ~~~dGsv~~T~ViL~~~dGa~ip~~L~~D~--------------~~ks~~ELi~~ale~iy~e 59 (116)
T PF07104_consen 11 YDPDGSVSKTKVILTNDDGAYIPVFLPGDK--------------IDKSNTELIELALEMIYQE 59 (116)
T ss_pred cCCCCCeeeeEEEEEcCCCcEEEeeCChhh--------------hcCCHHHHHHHHHHHHHHH
Confidence 467777776666666655333322233221 1456666666665555443
No 90
>PLN00191 enolase
Probab=21.03 E-value=3e+02 Score=24.65 Aligned_cols=87 Identities=15% Similarity=0.135 Sum_probs=45.5
Q ss_pred CceeeEEEEEE-eCCC--ceEEEEEcCCCceeeeCeEEEcCCh-hhhHHHHHcccCCCCCCCCCCCCCCCCC-CHHHHHH
Q 030109 69 PYYSFNVLGGL-DNEG--KGCVYTYDAVGSYERVGYSSQGSGS-TLIMPFLDNQLKSPSPLLLPAQDAVTPL-SEAEAVD 143 (183)
Q Consensus 69 P~~v~~lvaG~-D~~g--~p~Ly~iD~~G~~~~~~~~a~G~gs-~~~~~~Le~~~~~~~~~~~~~~~~~~~l-s~~eA~~ 143 (183)
|.-+..||.|- ...+ ..|=|.+=|.|......+.-.|.-- +.+..+|++.|.....+-+.+..+-|++ +.+||++
T Consensus 168 P~p~~niinGG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~~~vgdeGg~ap~~~~~~eal~ 247 (457)
T PLN00191 168 PVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMQMGSEVYHHLKAVIKKKYGQDACNVGDEGGFAPNIQDNKEGLE 247 (457)
T ss_pred cceeEEeecCccccccccchheeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcCccCCCCCcCCCCCCHHHHHH
Confidence 55555555442 1111 1344566677764433332222211 1223445554432123334455566677 8999999
Q ss_pred HHHHHHHHHHhh
Q 030109 144 LVKTCFASATER 155 (183)
Q Consensus 144 l~~~al~~~~~r 155 (183)
++.+|+..+-+.
T Consensus 248 ll~eAi~~ag~~ 259 (457)
T PLN00191 248 LLKEAIEKAGYT 259 (457)
T ss_pred HHHHHHHHcCCC
Confidence 999999877554
No 91
>TIGR01643 YD_repeat_2x YD repeat (two copies). This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin.
Probab=20.57 E-value=93 Score=17.23 Aligned_cols=18 Identities=44% Similarity=0.741 Sum_probs=7.4
Q ss_pred eCCCceEEEEEcCCCcee
Q 030109 80 DNEGKGCVYTYDAVGSYE 97 (183)
Q Consensus 80 D~~g~p~Ly~iD~~G~~~ 97 (183)
|+.|.-.-|..|+.|...
T Consensus 12 ~p~G~~~~~~YD~~Grl~ 29 (42)
T TIGR01643 12 DADGTTTRYTYDAAGRLV 29 (42)
T ss_pred CCCCCEEEEEECCCCCEE
Confidence 333333444444444433
Done!