Query 030109
Match_columns 183
No_of_seqs 111 out of 1049
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 13:49:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030109.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030109hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iru_M 20S proteasome; cell cy 100.0 2.5E-43 8.4E-48 279.3 22.8 176 4-183 38-213 (213)
2 1ryp_M 20S proteasome; multica 100.0 3.9E-43 1.3E-47 280.1 22.9 180 4-183 38-222 (222)
3 1iru_J 20S proteasome; cell cy 100.0 2.7E-42 9.3E-47 271.8 22.2 166 5-183 38-205 (205)
4 1ryp_J 20S proteasome; multica 100.0 1.2E-41 4.1E-46 268.0 22.3 165 5-183 38-204 (204)
5 3h4p_a Proteasome subunit beta 100.0 7.9E-41 2.7E-45 266.3 20.4 160 4-176 30-190 (219)
6 1j2q_H Proteasome beta subunit 100.0 2.7E-40 9.4E-45 259.8 21.7 158 4-175 29-187 (202)
7 1iru_H 20S proteasome; cell cy 100.0 6.4E-40 2.2E-44 258.3 22.1 164 4-181 29-192 (205)
8 1ryp_K 20S proteasome; multica 100.0 8.3E-40 2.8E-44 256.2 20.9 161 4-177 30-193 (198)
9 1iru_L 20S proteasome; cell cy 100.0 2.6E-39 9.1E-44 254.6 22.3 159 4-176 29-187 (204)
10 1yar_H Proteasome beta subunit 100.0 1.5E-39 5.3E-44 258.5 20.9 157 4-175 37-194 (217)
11 1ryp_L 20S proteasome; multica 100.0 2.8E-39 9.5E-44 255.9 21.8 160 4-176 29-188 (212)
12 1ryp_H 20S proteasome; multica 100.0 8.3E-39 2.8E-43 252.0 21.8 159 5-178 39-197 (205)
13 3unf_H Proteasome subunit beta 100.0 7.4E-39 2.5E-43 257.4 21.8 159 4-177 29-187 (234)
14 1ryp_A 20S proteasome; multica 100.0 4.3E-39 1.5E-43 259.8 20.1 164 4-174 58-225 (243)
15 3nzj_K Proteasome component PR 100.0 7.7E-39 2.6E-43 264.1 21.8 160 4-176 104-263 (287)
16 1iru_K 20S proteasome; cell cy 100.0 6.2E-39 2.1E-43 251.9 19.5 161 4-177 30-192 (201)
17 1iru_N 20S proteasome; cell cy 100.0 9.1E-39 3.1E-43 254.1 20.5 162 4-177 37-201 (219)
18 1ryp_N 20S proteasome; multica 100.0 6.9E-39 2.4E-43 257.2 19.4 165 4-176 37-209 (233)
19 1ryp_I 20S proteasome; multica 100.0 2.4E-38 8.1E-43 252.5 22.0 157 5-176 30-187 (222)
20 1iru_A 20S proteasome; cell cy 100.0 2.2E-38 7.7E-43 256.1 21.6 164 4-179 64-231 (246)
21 3unf_N Proteasome subunit beta 100.0 3.8E-38 1.3E-42 247.0 21.5 162 3-180 28-190 (199)
22 3nzj_H Proteasome component PU 100.0 1.4E-37 4.7E-42 253.6 22.2 155 4-173 58-212 (261)
23 1ryp_C 20S proteasome; multica 100.0 8.8E-38 3E-42 252.2 20.7 158 4-174 60-223 (244)
24 1iru_B 20S proteasome; cell cy 100.0 7E-38 2.4E-42 251.2 19.4 156 5-175 60-219 (233)
25 1g0u_M Proteasome component PR 100.0 6.7E-38 2.3E-42 256.1 19.4 165 4-176 70-242 (266)
26 1iru_I 20S proteasome; cell cy 100.0 1.5E-37 5.2E-42 249.7 21.0 156 5-175 30-185 (234)
27 1yar_A Proteasome alpha subuni 100.0 1.5E-37 5.1E-42 249.3 20.4 155 4-173 62-220 (233)
28 1ryp_E 20S proteasome; multica 100.0 1.8E-37 6.3E-42 250.1 19.5 156 4-173 54-219 (242)
29 1iru_C 20S proteasome; cell cy 100.0 2.7E-37 9.1E-42 251.9 20.2 157 5-173 61-221 (261)
30 1q5q_H Proteasome beta-type su 100.0 7.1E-37 2.4E-41 245.9 21.3 159 4-175 29-204 (235)
31 3mi0_A Proteasome subunit alph 100.0 5.4E-37 1.8E-41 248.5 20.4 157 3-173 47-218 (248)
32 1ryp_D 20S proteasome; multica 100.0 1.5E-36 5E-41 244.7 22.0 153 5-173 58-218 (241)
33 1iru_G 20S proteasome; cell cy 100.0 5.4E-37 1.8E-41 249.2 19.5 154 5-171 62-219 (254)
34 1iru_E 20S proteasome; cell cy 100.0 5.1E-37 1.8E-41 247.4 18.7 155 4-173 62-225 (241)
35 3h4p_A Proteasome subunit alph 100.0 6.3E-37 2.1E-41 250.2 18.1 160 4-179 66-229 (264)
36 1ryp_G 20S proteasome; multica 100.0 2.1E-36 7.2E-41 244.4 20.8 157 6-176 60-226 (244)
37 3nzj_F Proteasome component C1 100.0 1.9E-36 6.4E-41 250.0 19.7 161 5-179 63-232 (288)
38 1iru_F 20S proteasome; cell cy 100.0 1.1E-36 3.9E-41 248.5 18.2 156 5-172 59-219 (263)
39 1ryp_F 20S proteasome; multica 100.0 2.1E-36 7.2E-41 242.7 18.5 155 5-172 58-219 (233)
40 1iru_D 20S proteasome; cell cy 100.0 2.6E-36 8.9E-41 244.3 19.1 154 4-173 57-216 (248)
41 1q5q_A Proteasome alpha-type s 100.0 2.8E-36 9.6E-41 245.7 18.5 155 4-172 48-215 (259)
42 1q5r_H Proteasome beta-type su 100.0 7.2E-36 2.5E-40 247.1 20.8 159 4-175 94-269 (294)
43 1ryp_B 20S proteasome; multica 100.0 6.1E-36 2.1E-40 242.4 19.6 155 4-172 59-218 (250)
44 1j2p_A Alpha-ring, proteasome 100.0 1.4E-35 4.6E-40 239.8 21.1 155 4-174 62-222 (246)
45 2jay_A Proteasome; hydrolase; 100.0 1.4E-35 4.7E-40 245.2 18.0 160 3-175 85-261 (291)
46 1g3k_A ATP-dependent protease 100.0 3.2E-29 1.1E-33 192.6 15.6 139 4-169 29-173 (174)
47 1m4y_A ATP-dependent protease 100.0 3.8E-29 1.3E-33 191.7 14.3 138 4-168 29-171 (171)
48 2z3b_A ATP-dependent protease 100.0 5E-28 1.7E-32 187.1 15.1 141 5-169 36-180 (180)
49 3fpw_A HBPS, extracellular HAE 73.6 9.4 0.00032 28.9 6.4 39 134-176 63-101 (192)
50 2a2l_A Unknown; structural gen 67.3 9.2 0.00031 27.5 4.9 39 134-176 10-48 (145)
51 4asv_A Small glutamine-rich te 36.6 42 0.0014 22.3 3.7 21 137-157 42-62 (92)
52 2lxb_A Small glutamine-rich te 34.2 52 0.0018 20.9 3.7 21 137-157 30-50 (74)
53 3fau_A NEDD4-binding protein 2 31.0 69 0.0024 20.0 4.1 39 135-173 7-45 (82)
54 1ojh_A NBLA; degradation prote 30.9 48 0.0016 20.5 3.1 22 135-156 24-45 (65)
55 2q8v_A NBLA protein; phycobili 30.9 49 0.0017 20.3 3.1 22 135-156 29-50 (63)
56 4gof_A Small glutamine-rich te 27.8 51 0.0017 19.4 2.7 21 137-157 25-45 (52)
57 2d9i_A NEDD4-binding protein 2 27.8 92 0.0032 20.1 4.4 39 135-173 15-53 (96)
58 1p4k_A N(4)-(beta-N-acetylgluc 27.0 1.8E+02 0.0062 23.3 6.7 68 93-173 189-265 (295)
59 1apy_B Aspartylglucosaminidase 26.8 1.7E+02 0.0057 20.8 5.8 63 93-173 38-107 (141)
60 3ub6_A Chemoreceptor TLPB; hom 26.1 1.1E+02 0.0038 22.1 5.1 37 135-175 46-82 (181)
61 2gdt_A Leader protein; P65 hom 26.0 62 0.0021 22.0 3.2 20 134-153 20-39 (116)
62 1sau_A Sulfite reductase, desu 24.0 1E+02 0.0035 21.2 4.1 34 23-60 46-79 (115)
63 3cs5_A Phycobilisome degradati 23.8 17 0.00059 22.1 0.1 23 134-156 26-48 (59)
64 1yx3_A Hypothetical protein DS 21.9 1.3E+02 0.0045 21.2 4.4 34 25-62 64-97 (132)
65 4gdv_A L-asparaginase; NTN enz 21.5 2.5E+02 0.0084 22.6 6.6 62 93-173 207-275 (310)
66 2kwp_A Transcription elongatio 20.2 2.1E+02 0.007 19.8 5.2 39 135-173 17-55 (129)
67 1b66_A 6-pyruvoyl tetrahydropt 20.0 78 0.0027 22.3 3.0 44 21-64 62-115 (140)
No 1
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=2.5e-43 Score=279.29 Aligned_cols=176 Identities=45% Similarity=0.739 Sum_probs=162.4
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCCceeeEEEEEEeCCC
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEG 83 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~~P~~v~~lvaG~D~~g 83 (183)
...+||++|+++++++++|+.+|++.++++++.+++.|+++++++++++.+|+++++++|++|+|||++++||||||++|
T Consensus 38 ~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~g 117 (213)
T 1iru_M 38 RDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEG 117 (213)
T ss_dssp SCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEECTTS
T ss_pred CCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhCCCCceEEEEEEEEcCCC
Confidence 45789999999999999999999999999999999999999999999999999999999998889999999999999877
Q ss_pred ceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCcE
Q 030109 84 KGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKL 163 (183)
Q Consensus 84 ~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~i 163 (183)
+|+||++||+|++.+++++|+|+|+++++++||+.|+.++.. ..+.++||++||++++++||..+.+||..+++++
T Consensus 118 ~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~----~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i 193 (213)
T 1iru_M 118 KGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQ----NVEHVPLSLDRAMRLVKDVFISAAERDVYTGDAL 193 (213)
T ss_dssp CEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCS----SCCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEE
T ss_pred CEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhcccccccc----ccCCCCCCHHHHHHHHHHHHHHHHHhCCccCCcE
Confidence 899999999999999999999999999999999995431100 0012389999999999999999999999999999
Q ss_pred EEEEEcCCCeEEEeeeccCC
Q 030109 164 EIVVLNKGGIHREYMELRKD 183 (183)
Q Consensus 164 ~I~ii~k~g~~~~~~~~~~~ 183 (183)
+|++|+++|++++.+++|+|
T Consensus 194 ~v~vi~~~g~~~~~~~~r~d 213 (213)
T 1iru_M 194 RICIVTKEGIREETVSLRKD 213 (213)
T ss_dssp EEEEEETTEEEEEEEECCCC
T ss_pred EEEEEcCCCeEEEEeecCCC
Confidence 99999999999999999998
No 2
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=3.9e-43 Score=280.15 Aligned_cols=180 Identities=41% Similarity=0.667 Sum_probs=163.3
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhhcCCCceeeEEEEEEeCC
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHN-KQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNE 82 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~-~~i~~~~la~~is~~ly~~r~~P~~v~~lvaG~D~~ 82 (183)
...+||++|+++++++++|+.+|++.+.++++.+++.|+++++ ++++++.+|+++++++|++|++||++++||||||++
T Consensus 38 ~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~P~~v~~ivaG~D~~ 117 (222)
T 1ryp_M 38 RYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDED 117 (222)
T ss_dssp SCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTT
T ss_pred CCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEcCC
Confidence 3578999999999999999999999999999999999999999 999999999999999999888999999999999988
Q ss_pred CceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCC----CCCCCCCCCHHHHHHHHHHHHHHHHhhccc
Q 030109 83 GKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLP----AQDAVTPLSEAEAVDLVKTCFASATERDIY 158 (183)
Q Consensus 83 g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~----~~~~~~~ls~~eA~~l~~~al~~~~~rd~~ 158 (183)
|+|+||++||+|++.+++++|+|+|+.+++++||+.|+.++...-+ +..+.++||++||++++++||..+.+||..
T Consensus 118 g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~ 197 (222)
T 1ryp_M 118 GKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQ 197 (222)
T ss_dssp SCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCBCTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTT
T ss_pred CCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhcccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 8899999999999999999999999999999999985532111000 000224899999999999999999999999
Q ss_pred cCCcEEEEEEcCCCeEEEeeeccCC
Q 030109 159 TGDKLEIVVLNKGGIHREYMELRKD 183 (183)
Q Consensus 159 ~g~~i~I~ii~k~g~~~~~~~~~~~ 183 (183)
++++++|++|+++|++++.+++|+|
T Consensus 198 sg~~i~v~vi~~~g~~~~~~~~r~d 222 (222)
T 1ryp_M 198 VGDGLEILIVTKDGVRKEFYELKRD 222 (222)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCCC
T ss_pred CCCcEEEEEEcCCCeEEEEeeccCC
Confidence 9999999999999999999999998
No 3
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=2.7e-42 Score=271.82 Aligned_cols=166 Identities=20% Similarity=0.332 Sum_probs=159.8
Q ss_pred ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCCceeeEEEEEEeC-CC
Q 030109 5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDN-EG 83 (183)
Q Consensus 5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~~P~~v~~lvaG~D~-~g 83 (183)
..+||++|++|++++++|..+|++.+.++++.+++.|+++++++++++.+|+++++++|++|+.||++++||||||+ ++
T Consensus 38 ~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~~~ 117 (205)
T 1iru_J 38 DFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTF 117 (205)
T ss_dssp CCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHTTTTSCCSCCCEEEEECTTSC
T ss_pred CCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCC
Confidence 67899999999999999999999999999999999999999999999999999999999988889999999999996 56
Q ss_pred ceEEEEEcCCCceeee-CeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCc
Q 030109 84 KGCVYTYDAVGSYERV-GYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDK 162 (183)
Q Consensus 84 ~p~Ly~iD~~G~~~~~-~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~ 162 (183)
+|+||++||+|++..+ .++|+|+|+++++++||+.|++ +||++||++++++||..+.+||..++++
T Consensus 118 ~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~-------------~~s~eea~~l~~~al~~~~~~d~~s~~~ 184 (205)
T 1iru_J 118 KPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEP-------------NMDPDHLFETISQAMLNAVDRDAVSGMG 184 (205)
T ss_dssp CEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCS-------------SCCHHHHHHHHHHHHHHHGGGBTTSCSC
T ss_pred CeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCC-------------CCCHHHHHHHHHHHHHHHHHhCcccCCc
Confidence 7999999999999776 5799999999999999999997 9999999999999999999999999999
Q ss_pred EEEEEEcCCCeEEEeeeccCC
Q 030109 163 LEIVVLNKGGIHREYMELRKD 183 (183)
Q Consensus 163 i~I~ii~k~g~~~~~~~~~~~ 183 (183)
++|++|+++|++++.+++|+|
T Consensus 185 i~v~vi~~~g~~~~~~~~r~d 205 (205)
T 1iru_J 185 VIVHIIEKDKITTRTLKARMD 205 (205)
T ss_dssp EEEEEEESSBEEEEEBCCCCC
T ss_pred eEEEEEcCCCEEEEEeecCCC
Confidence 999999999999999999998
No 4
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=1.2e-41 Score=267.97 Aligned_cols=165 Identities=19% Similarity=0.426 Sum_probs=158.8
Q ss_pred ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCCceeeEEEEEEeC-CC
Q 030109 5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDN-EG 83 (183)
Q Consensus 5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~~P~~v~~lvaG~D~-~g 83 (183)
..+||++|+ |++++++|..+|++.+.++++.+++.|+++++++++++.+|+++++++|++|..||++++||||||+ ++
T Consensus 38 ~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~y~~~~~P~~v~~lvaG~D~~~~ 116 (204)
T 1ryp_J 38 KFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSG 116 (204)
T ss_dssp CCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTTC
T ss_pred CcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCC
Confidence 678999999 9999999999999999999999999999999999999999999999999988789999999999996 56
Q ss_pred ceEEEEEcCCCceeee-CeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCc
Q 030109 84 KGCVYTYDAVGSYERV-GYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDK 162 (183)
Q Consensus 84 ~p~Ly~iD~~G~~~~~-~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~ 162 (183)
+|+||++||+|++..+ .++|+|+|+++++++||+.|++ +||++||++++++||..+.+||..++++
T Consensus 117 gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~-------------~~s~eea~~l~~~al~~~~~~d~~s~~~ 183 (204)
T 1ryp_J 117 KPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEP-------------NLEPEDLFETISQALLNAADRDALSGWG 183 (204)
T ss_dssp CEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCS-------------SCCHHHHHHHHHHHHHHHHTTBTTSCSC
T ss_pred ceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCC-------------CcCHHHHHHHHHHHHHHHHHhCcccCCc
Confidence 7999999999999766 5799999999999999999997 9999999999999999999999999999
Q ss_pred EEEEEEcCCCeEEEeeeccCC
Q 030109 163 LEIVVLNKGGIHREYMELRKD 183 (183)
Q Consensus 163 i~I~ii~k~g~~~~~~~~~~~ 183 (183)
++|++|+++|++++.+++|+|
T Consensus 184 i~v~vi~~~g~~~~~~~~r~d 204 (204)
T 1ryp_J 184 AVVYIIKKDEVVKRYLKMRQD 204 (204)
T ss_dssp EEEEEEESSCEEEEEECCCCC
T ss_pred EEEEEEcCCCEEEEEeecCCC
Confidence 999999999999999999998
No 5
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=7.9e-41 Score=266.34 Aligned_cols=160 Identities=25% Similarity=0.392 Sum_probs=153.7
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCCceeeEEEEEEeCCC
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEG 83 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~~P~~v~~lvaG~D~~g 83 (183)
...+||++|++|++|+++|+.+|++.++++++.+++.|+++++++++++.+|+++++++|++|++||+|++||||||+++
T Consensus 30 ~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~P~~v~~lvaG~D~~~ 109 (219)
T 3h4p_a 30 KEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLE 109 (219)
T ss_dssp TTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHTTTTTCCCCCEEEEEETTT
T ss_pred cccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCC
Confidence 46789999999999999999999999999999999999999999999999999999999998889999999999999867
Q ss_pred ceEEEEEcCCCceeeeC-eEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCc
Q 030109 84 KGCVYTYDAVGSYERVG-YSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDK 162 (183)
Q Consensus 84 ~p~Ly~iD~~G~~~~~~-~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~ 162 (183)
+|+||++||+|++.+++ ++|+|+|+++++++||++|++ +||++||++++++||..+.+||..++++
T Consensus 110 gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~-------------~ms~eea~~la~~al~~~~~rd~~sg~~ 176 (219)
T 3h4p_a 110 GAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDR-------------DMSVEEGIKLALNALKSAMERDTFSGNG 176 (219)
T ss_dssp EEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCT-------------TCCHHHHHHHHHHHHHHHHTSCSSCCSC
T ss_pred CcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCC-------------CCCHHHHHHHHHHHHHHHHhhcCCCCCc
Confidence 79999999999999999 999999999999999999997 9999999999999999999999999999
Q ss_pred EEEEEEcCCCeEEE
Q 030109 163 LEIVVLNKGGIHRE 176 (183)
Q Consensus 163 i~I~ii~k~g~~~~ 176 (183)
++|++|+++|++..
T Consensus 177 i~v~vi~~~g~~~l 190 (219)
T 3h4p_a 177 ISLAVITKDGVKIF 190 (219)
T ss_dssp CCEEEEETTEEEEC
T ss_pred EEEEEEeCCCeEEc
Confidence 99999999987653
No 6
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=2.7e-40 Score=259.83 Aligned_cols=158 Identities=24% Similarity=0.386 Sum_probs=151.7
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCCceeeEEEEEEeCCC
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEG 83 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~~P~~v~~lvaG~D~~g 83 (183)
...+||++|++|++|+++|..+|++.++++++.+++.|+++++++++++.+|+++++++|.+|+|||++++||||||+ +
T Consensus 29 ~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~r~rp~~~~~lvaG~D~-~ 107 (202)
T 1j2q_H 29 KAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDS-E 107 (202)
T ss_dssp SSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEEET-T
T ss_pred ccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhCCCCceEEEEEEEEeC-C
Confidence 356899999999999999999999999999999999999999999999999999999999988899999999999997 4
Q ss_pred ceEEEEEcCCCceeeeC-eEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCc
Q 030109 84 KGCVYTYDAVGSYERVG-YSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDK 162 (183)
Q Consensus 84 ~p~Ly~iD~~G~~~~~~-~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~ 162 (183)
+|+||++||+|++.+++ ++|+|+|+++++++||++|++ +||++||++++++||..+.+||..++++
T Consensus 108 gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~-------------~~s~eea~~la~~al~~~~~~d~~s~~~ 174 (202)
T 1j2q_H 108 GKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTP-------------EIGVDEAVELAVRAIYSAMKRDSASGDG 174 (202)
T ss_dssp EEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCT-------------TCCHHHHHHHHHHHHHHHHTTCTTSCSC
T ss_pred CCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCC-------------CcCHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 69999999999999999 999999999999999999997 9999999999999999999999999999
Q ss_pred EEEEEEcCCCeEE
Q 030109 163 LEIVVLNKGGIHR 175 (183)
Q Consensus 163 i~I~ii~k~g~~~ 175 (183)
++|++|+++|++.
T Consensus 175 i~v~vi~~~g~~~ 187 (202)
T 1j2q_H 175 IDVVKITEDEFYQ 187 (202)
T ss_dssp EEEEEECSSCEEE
T ss_pred EEEEEEeCCCeEE
Confidence 9999999998654
No 7
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=6.4e-40 Score=258.27 Aligned_cols=164 Identities=20% Similarity=0.255 Sum_probs=155.8
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCCceeeEEEEEEeCCC
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEG 83 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~~P~~v~~lvaG~D~~g 83 (183)
...+||++|++|++++++|+.+|++.+.++++.+++.|+++++++++++.+++++++++|.+|. ||++++||||||+++
T Consensus 29 ~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~-p~~~~~lvaG~D~~~ 107 (205)
T 1iru_H 29 RVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYRE-DLMAGIIIAGWDPQE 107 (205)
T ss_dssp SSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTT-TCCEEEEEEEEETTT
T ss_pred CCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCc-CccEEEEEEEEeCCC
Confidence 3468999999999999999999999999999999999999999999999999999999998775 999999999999867
Q ss_pred ceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCcE
Q 030109 84 KGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKL 163 (183)
Q Consensus 84 ~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~i 163 (183)
+|+||++||+|++.+++++++|+|+++++++||++|++ +||++||++++++||..+.+||..+++++
T Consensus 108 gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~-------------~~s~eea~~l~~~al~~~~~~d~~s~~~i 174 (205)
T 1iru_H 108 GGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYRE-------------GMTKEECLQFTANALALAMERDGSSGGVI 174 (205)
T ss_dssp EEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCT-------------TCCHHHHHHHHHHHHHHHHHHBTTCCSCE
T ss_pred CCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCC-------------CCCHHHHHHHHHHHHHHHHHhccccCCcE
Confidence 79999999999999999999999999999999999997 99999999999999999999999999999
Q ss_pred EEEEEcCCCeEEEeeecc
Q 030109 164 EIVVLNKGGIHREYMELR 181 (183)
Q Consensus 164 ~I~ii~k~g~~~~~~~~~ 181 (183)
+|++|+++|++++.++.+
T Consensus 175 ~v~vi~~~g~~~~~l~~~ 192 (205)
T 1iru_H 175 RLAAIAESGVERQVLLGD 192 (205)
T ss_dssp EEEEEETTEEEEEEECGG
T ss_pred EEEEEeCCCeEEEEeChH
Confidence 999999999987777643
No 8
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=8.3e-40 Score=256.22 Aligned_cols=161 Identities=19% Similarity=0.284 Sum_probs=152.2
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhc-C-CCceeeEEEEEEeC
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKR-F-FPYYSFNVLGGLDN 81 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r-~-~P~~v~~lvaG~D~ 81 (183)
...+||++|++|++++++|+.+|++.+.++++.+++.|+++++++++++.+|+++++++|.++ . +||++++||||||+
T Consensus 30 ~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~~~r~p~~v~~lvaG~D~ 109 (198)
T 1ryp_K 30 DSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDK 109 (198)
T ss_dssp SCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTTSSSCCCEEEEEEEEET
T ss_pred cCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEEEEEeC
Confidence 357899999999999999999999999999999999999999999999999999999998753 3 49999999999997
Q ss_pred -CCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccC
Q 030109 82 -EGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTG 160 (183)
Q Consensus 82 -~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g 160 (183)
+++|+||++||+|++.+++++|+|+|+++++++||+.|++ +||++||++++++||..+.+||..++
T Consensus 110 ~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~-------------~~s~eea~~l~~~al~~~~~~d~~s~ 176 (198)
T 1ryp_K 110 KKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRP-------------DMTTEEGLDLLKLCVQELEKRMPMDF 176 (198)
T ss_dssp TTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCT-------------TCCHHHHHHHHHHHHHHHHHHCSBCC
T ss_pred CCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCC-------------CCCHHHHHHHHHHHHHHHHHhCccCC
Confidence 5679999999999999999999999999999999999997 99999999999999999999999999
Q ss_pred CcEEEEEEcCCCeEEEe
Q 030109 161 DKLEIVVLNKGGIHREY 177 (183)
Q Consensus 161 ~~i~I~ii~k~g~~~~~ 177 (183)
++++|++|+++|+++..
T Consensus 177 ~~i~v~vi~~~g~~~~~ 193 (198)
T 1ryp_K 177 KGVIVKIVDKDGIRQVD 193 (198)
T ss_dssp CCEEEEEEETTEEEEEC
T ss_pred CceEEEEEcCCCEEEec
Confidence 99999999999987543
No 9
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=2.6e-39 Score=254.55 Aligned_cols=159 Identities=23% Similarity=0.242 Sum_probs=152.0
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCCceeeEEEEEEeCCC
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEG 83 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~~P~~v~~lvaG~D~~g 83 (183)
...+||++|++|++++++|..+|++.+.++++.+++.|+++++++++++.+|+++++++|.+|.+||++++||||||+ +
T Consensus 29 ~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~r~~~~~v~~lvaG~D~-~ 107 (204)
T 1iru_L 29 QTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDK-R 107 (204)
T ss_dssp SCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTTTSCCCBEEEEEEECS-S
T ss_pred CcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEEEEEeC-C
Confidence 356899999999999999999999999999999999999999999999999999999999988789999999999997 4
Q ss_pred ceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCcE
Q 030109 84 KGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKL 163 (183)
Q Consensus 84 ~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~i 163 (183)
+|+||++||+|++.+++++|+|+|+++++++||++|++ +||++||++++++||..+.+||..+++++
T Consensus 108 gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~-------------~~s~eea~~l~~~al~~~~~rd~~s~~~i 174 (204)
T 1iru_L 108 GPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSY-------------DLEVEQAYDLARRAIYQATYRDAYSGGAV 174 (204)
T ss_dssp SEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCT-------------TCCHHHHHHHHHHHHHHHHHHBTTCCSEE
T ss_pred CCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCC-------------CCCHHHHHHHHHHHHHHHHHhCccCCCce
Confidence 59999999999999999999999999999999999997 99999999999999999999999899999
Q ss_pred EEEEEcCCCeEEE
Q 030109 164 EIVVLNKGGIHRE 176 (183)
Q Consensus 164 ~I~ii~k~g~~~~ 176 (183)
+|++|+++|++..
T Consensus 175 ~v~vi~~~g~~~l 187 (204)
T 1iru_L 175 NLYHVREDGWIRV 187 (204)
T ss_dssp EEEEECSSCEEEE
T ss_pred EEEEEeCCceEEe
Confidence 9999999997543
No 10
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=1.5e-39 Score=258.48 Aligned_cols=157 Identities=27% Similarity=0.392 Sum_probs=150.6
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCCceeeEEEEEEeCCC
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEG 83 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~~P~~v~~lvaG~D~~g 83 (183)
...+||++|+++++++++|..+|++.+.++++.+++.|+++++++++++.+|+++++++|++|+|||++++|||||| +
T Consensus 37 ~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~r~rp~~v~~lvaG~D-~- 114 (217)
T 1yar_H 37 KNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID-T- 114 (217)
T ss_dssp SCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEES-S-
T ss_pred CccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEC-C-
Confidence 35689999999999999999999999999999999999999999999999999999999998889999999999999 5
Q ss_pred ceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCcE
Q 030109 84 KGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKL 163 (183)
Q Consensus 84 ~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~i 163 (183)
+|+||++||+|++.+++++|+|+|+++++++||+.|++ +||++||++++++||..+.+||..+++++
T Consensus 115 gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~-------------~~s~eea~~la~~al~~~~~rd~~s~~~i 181 (217)
T 1yar_H 115 APHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSE-------------KMTVDEGVDLVIRAISAAKQRDSASGGMI 181 (217)
T ss_dssp SEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCT-------------TCCHHHHHHHHHHHHHHHHHHCTTCCSCC
T ss_pred CCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhccc-------------CCCHHHHHHHHHHHHHHHHhccCCCCCcE
Confidence 59999999999999999999999999999999999997 99999999999999999999999999999
Q ss_pred EEEEEcC-CCeEE
Q 030109 164 EIVVLNK-GGIHR 175 (183)
Q Consensus 164 ~I~ii~k-~g~~~ 175 (183)
+|++|++ +|++.
T Consensus 182 ~v~vi~~~~g~~~ 194 (217)
T 1yar_H 182 DVAVITRKDGYVQ 194 (217)
T ss_dssp EEEEEETTTEEEE
T ss_pred EEEEEECCCCEEE
Confidence 9999999 87654
No 11
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=2.8e-39 Score=255.92 Aligned_cols=160 Identities=19% Similarity=0.197 Sum_probs=152.9
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCCceeeEEEEEEeCCC
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEG 83 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~~P~~v~~lvaG~D~~g 83 (183)
...+||++|++|++++++|..+|++.+.++++.+++.|+++++++++++.+++++++++|.+|..||++++||||||+++
T Consensus 29 ~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~p~~v~~lvaG~D~~~ 108 (212)
T 1ryp_L 29 QTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKE 108 (212)
T ss_dssp SCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCBEEEEEEEETTT
T ss_pred CcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhCCCCceEEEEEEEEeCCC
Confidence 35689999999999999999999999999999999999999999999999999999999998877999999999999766
Q ss_pred ceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCcE
Q 030109 84 KGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKL 163 (183)
Q Consensus 84 ~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~i 163 (183)
+|+||++||+|++.+++++|+|+|+++++++||++|++ +||++||++++++||..+.+||..+++++
T Consensus 109 gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~-------------~~s~eea~~la~~al~~~~~rd~~s~~~i 175 (212)
T 1ryp_L 109 GPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKW-------------DLSVEDALYLGKRSILAAAHRDAYSGGSV 175 (212)
T ss_dssp EEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCT-------------TCCHHHHHHHHHHHHHHHHHHBTTCCSEE
T ss_pred CCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCC-------------CCCHHHHHHHHHHHHHHHHHhccccCCce
Confidence 79999999999999999999999999999999999997 99999999999999999999999999999
Q ss_pred EEEEEcCCCeEEE
Q 030109 164 EIVVLNKGGIHRE 176 (183)
Q Consensus 164 ~I~ii~k~g~~~~ 176 (183)
+|++|+++|++..
T Consensus 176 ~v~vi~~~g~~~~ 188 (212)
T 1ryp_L 176 NLYHVTEDGWIYH 188 (212)
T ss_dssp EEEEEETTEEEEE
T ss_pred EEEEEcCCceEEE
Confidence 9999999997643
No 12
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=8.3e-39 Score=252.00 Aligned_cols=159 Identities=26% Similarity=0.361 Sum_probs=152.6
Q ss_pred ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCCceeeEEEEEEeCCCc
Q 030109 5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGK 84 (183)
Q Consensus 5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~~P~~v~~lvaG~D~~g~ 84 (183)
..+||++|++|++++++|..+|++.+.++++.+++.|++++++ ++++.+|+++++++|.+|.+ |++++||||||++++
T Consensus 39 ~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~-~~v~~la~~l~~~~~~~~~~-~~~~~lvaG~D~~~g 116 (205)
T 1ryp_H 39 VTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT-PSTETAASVFKELCYENKDN-LTAGIIVAGYDDKNK 116 (205)
T ss_dssp SCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHTTTT-CCEEEEEEEEETTTE
T ss_pred CcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhhcC-ceEEEEEEEEecCCC
Confidence 4689999999999999999999999999999999999999999 99999999999999998865 999999999998667
Q ss_pred eEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCcEE
Q 030109 85 GCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLE 164 (183)
Q Consensus 85 p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~i~ 164 (183)
|+||++||+|++.+++++|+|+|+++++++||++|++ +||++||++++++||..+.+||..++++++
T Consensus 117 p~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~-------------~~s~eea~~l~~~al~~a~~~d~~sg~~i~ 183 (205)
T 1ryp_H 117 GEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRE-------------NMSKEETVDFIKHSLSQAIKWDGSSGGVIR 183 (205)
T ss_dssp EEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCT-------------TCCHHHHHHHHHHHHHHHHHHBTTCCSCEE
T ss_pred cEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCC-------------CCCHHHHHHHHHHHHHHHHHhCCccCCeEE
Confidence 9999999999999999999999999999999999997 999999999999999999999999999999
Q ss_pred EEEEcCCCeEEEee
Q 030109 165 IVVLNKGGIHREYM 178 (183)
Q Consensus 165 I~ii~k~g~~~~~~ 178 (183)
|++|+++|++++.+
T Consensus 184 v~vi~~~g~~~~~~ 197 (205)
T 1ryp_H 184 MVVLTAAGVERLIF 197 (205)
T ss_dssp EEEEETTEEEEEEE
T ss_pred EEEEcCCCEEEEEe
Confidence 99999999987776
No 13
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=7.4e-39 Score=257.43 Aligned_cols=159 Identities=18% Similarity=0.287 Sum_probs=151.2
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCCceeeEEEEEEeCCC
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEG 83 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~~P~~v~~lvaG~D~~g 83 (183)
...+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.+++++++++|.++ +||++++||||||++
T Consensus 29 ~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~-~p~~v~llvaG~D~~- 106 (234)
T 3unf_H 29 KSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQ-GHVGASLVVGGVDLN- 106 (234)
T ss_dssp SSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHTT-TCSCEEEEEEEEETT-
T ss_pred CccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHhcC-CCccEEEEEEEEeCC-
Confidence 456899999999999999999999999999999999999999999999999999999998764 699999999999985
Q ss_pred ceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCcE
Q 030109 84 KGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKL 163 (183)
Q Consensus 84 ~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~i 163 (183)
+|+||++||+|++.+++++|+|+|++.++++||+.|++ +||++||++++++||..+.+||..+++++
T Consensus 107 gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~-------------~ms~eeA~~la~~al~~~~~~D~~sg~~i 173 (234)
T 3unf_H 107 GPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQP-------------NMTLEAAQELLVEAITAGILSDLGSGGNV 173 (234)
T ss_dssp EEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCS-------------SCCHHHHHHHHHHHHHHHHHHBTTCCSCE
T ss_pred CCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCC-------------CCCHHHHHHHHHHHHHHHHhhcCCCCCcE
Confidence 59999999999999999999999999999999999997 99999999999999999999999999999
Q ss_pred EEEEEcCCCeEEEe
Q 030109 164 EIVVLNKGGIHREY 177 (183)
Q Consensus 164 ~I~ii~k~g~~~~~ 177 (183)
+|++|+++|++...
T Consensus 174 ev~vi~~dg~~~l~ 187 (234)
T 3unf_H 174 DACVITAGGAKLQR 187 (234)
T ss_dssp EEEEEESSCEEEEE
T ss_pred EEEEEECCCEEEeC
Confidence 99999999986543
No 14
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=4.3e-39 Score=259.81 Aligned_cols=164 Identities=19% Similarity=0.214 Sum_probs=151.1
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--hhhc--CCCceeeEEEEEE
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTL--YYKR--FFPYYSFNVLGGL 79 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~l--y~~r--~~P~~v~~lvaG~ 79 (183)
...+||++|++|++|+++|+.+|++.+++++|.+++.|+++++++++++.+|+++++++ |++| +|||+|++|||||
T Consensus 58 ~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~ 137 (243)
T 1ryp_A 58 TTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSV 137 (243)
T ss_dssp GGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEE
T ss_pred CcCCceEEECCCEEEEEEecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999 8877 7999999999999
Q ss_pred eCCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 030109 80 DNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYT 159 (183)
Q Consensus 80 D~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~ 159 (183)
|++++|+||++||+|++.+++++|+|+|++.++++||+.|++++.+ ..++||++||++++++||..+.+|| .+
T Consensus 138 D~~~gp~Ly~~dp~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~~~------~~~~ms~eea~~l~~~al~~~~~rd-~s 210 (243)
T 1ryp_A 138 DEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKID------HINEESWEKVVEFAITHMIDALGTE-FS 210 (243)
T ss_dssp ETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHHCSS------SCCCSSHHHHHHHHHHHHHHHHTCC-CC
T ss_pred cCCCCcEEEEEcCCCCEEEEEEEEECCCcHHHHHHHHHHhhhcccc------cccCCCHHHHHHHHHHHHHHHhccc-CC
Confidence 9867799999999999999999999999999999999999862110 1127999999999999999999999 78
Q ss_pred CCcEEEEEEcCCCeE
Q 030109 160 GDKLEIVVLNKGGIH 174 (183)
Q Consensus 160 g~~i~I~ii~k~g~~ 174 (183)
+++++|++|+++|++
T Consensus 211 ~~~iev~vi~~~g~~ 225 (243)
T 1ryp_A 211 KNDLEVGVATKDKFF 225 (243)
T ss_dssp TTSEEEEEEETTEEE
T ss_pred CCcEEEEEEECCCeE
Confidence 999999999999943
No 15
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=7.7e-39 Score=264.14 Aligned_cols=160 Identities=19% Similarity=0.198 Sum_probs=154.1
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCCceeeEEEEEEeCCC
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEG 83 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~~P~~v~~lvaG~D~~g 83 (183)
...+||++|+++++++++|..+|++.+.++++.+++.|+++++++++++.+++++++++|.+|.+||++++||||||+++
T Consensus 104 ~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~~~isv~~la~~ls~~l~~~r~~p~~v~~lvaG~D~~~ 183 (287)
T 3nzj_K 104 QTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKE 183 (287)
T ss_dssp SCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEEETTT
T ss_pred CCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCC
Confidence 46789999999999999999999999999999999999999999999999999999999998878999999999999777
Q ss_pred ceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCcE
Q 030109 84 KGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKL 163 (183)
Q Consensus 84 ~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~i 163 (183)
+|+||++||+|++.+++++|+|+|+++++++||+.|++ +||++||++++++||..+.+||+.+++++
T Consensus 184 gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y~~-------------dms~eEAi~la~~aL~~a~~rD~~sg~~i 250 (287)
T 3nzj_K 184 GPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKW-------------DLSVEDALYLGKRSILAAAHRDAYSGGSV 250 (287)
T ss_dssp EEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSCCT-------------TCCHHHHHHHHHHHHHHHHHHBTTCCSEE
T ss_pred CCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhhcC-------------CCCHHHHHHHHHHHHHHHHhhCcCCCCce
Confidence 89999999999999999999999999999999999997 99999999999999999999999999999
Q ss_pred EEEEEcCCCeEEE
Q 030109 164 EIVVLNKGGIHRE 176 (183)
Q Consensus 164 ~I~ii~k~g~~~~ 176 (183)
+|++|+++|++..
T Consensus 251 ~V~vItkdg~~~l 263 (287)
T 3nzj_K 251 NLYHVTEDGWIYH 263 (287)
T ss_dssp EEEEEETTEEEEE
T ss_pred EEEEEeCCCEEEe
Confidence 9999999997654
No 16
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=6.2e-39 Score=251.91 Aligned_cols=161 Identities=19% Similarity=0.294 Sum_probs=151.3
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hhhc-CCCceeeEEEEEEeC
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTL-YYKR-FFPYYSFNVLGGLDN 81 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~l-y~~r-~~P~~v~~lvaG~D~ 81 (183)
...+||++|++|++++++|..+|++.++++++.+++.|+++++++++++.+++++++.+ |..| .+||++++||||||+
T Consensus 30 ~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~p~~~~~lvaG~D~ 109 (201)
T 1iru_K 30 DDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDE 109 (201)
T ss_dssp SSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHTSSSCCCEEEEEEEEET
T ss_pred cCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCCCccEEEEEEEEeC
Confidence 35689999999999999999999999999999999999999999999999999999876 5533 369999999999998
Q ss_pred CCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCC
Q 030109 82 EGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGD 161 (183)
Q Consensus 82 ~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~ 161 (183)
+++|+||++||+|++.+++++|+|+|+++++++||++|++ +||++||++++++||..+.+||..+++
T Consensus 110 ~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~-------------~~s~eea~~l~~~al~~a~~rd~~sg~ 176 (201)
T 1iru_K 110 HEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTP-------------TISRERAVELLRKCLEELQKRFILNLP 176 (201)
T ss_dssp TTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCT-------------TCCHHHHHHHHHHHHHHHHHTBCBCCC
T ss_pred CCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccC-------------CCCHHHHHHHHHHHHHHHHhhccccCC
Confidence 6779999999999999999999999999999999999997 999999999999999999999999999
Q ss_pred cEEEEEEcCCCeEEEe
Q 030109 162 KLEIVVLNKGGIHREY 177 (183)
Q Consensus 162 ~i~I~ii~k~g~~~~~ 177 (183)
+++|++|+++|+++..
T Consensus 177 ~i~v~vi~~~g~~~~~ 192 (201)
T 1iru_K 177 TFSVRIIDKNGIHDLD 192 (201)
T ss_dssp CEEEEEEETTEEECCC
T ss_pred ceEEEEEcCCCeEEee
Confidence 9999999999987654
No 17
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=9.1e-39 Score=254.12 Aligned_cols=162 Identities=21% Similarity=0.277 Sum_probs=152.5
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhhhc--CCCceeeEEEEEEe
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQH-QHNKQMSCPGMAQLLSNTLYYKR--FFPYYSFNVLGGLD 80 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~-~~~~~i~~~~la~~is~~ly~~r--~~P~~v~~lvaG~D 80 (183)
...+||++|++|++|+++|..+|++.+.+++|.+++.|++ +++++++++.+|+++++++|++| +|||++++||||||
T Consensus 37 ~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D 116 (219)
T 1iru_N 37 RNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYA 116 (219)
T ss_dssp CSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEE
T ss_pred CCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEEEEEE
Confidence 4568999999999999999999999999999999999998 99999999999999999999877 79999999999999
Q ss_pred CCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccC
Q 030109 81 NEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTG 160 (183)
Q Consensus 81 ~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g 160 (183)
++ +|+||++||+|++.+++++|+|+|+++++++||+.|++ .++||++||++++++||..+.+||..++
T Consensus 117 ~~-gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~-----------~~~mt~eea~~l~~~al~~~~~~d~~sg 184 (219)
T 1iru_N 117 DG-ESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEK-----------QPVLSQTEARDLVERCMRVLYYRDARSY 184 (219)
T ss_dssp TT-EEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTS-----------CSCCCHHHHHHHHHHHHHHHHHHBTTCC
T ss_pred CC-CCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCC-----------CCCCCHHHHHHHHHHHHHHHHHhcCcCC
Confidence 74 79999999999999999999999999999999999986 1389999999999999999999999999
Q ss_pred CcEEEEEEcCCCeEEEe
Q 030109 161 DKLEIVVLNKGGIHREY 177 (183)
Q Consensus 161 ~~i~I~ii~k~g~~~~~ 177 (183)
++++|++|+++|++...
T Consensus 185 ~~i~v~vi~~~g~~~~~ 201 (219)
T 1iru_N 185 NRFQTATVTEKGVEIEG 201 (219)
T ss_dssp SCEEEEEEETTEEEEEE
T ss_pred CcEEEEEEcCCCEEEcC
Confidence 99999999999975443
No 18
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=6.9e-39 Score=257.16 Aligned_cols=165 Identities=15% Similarity=0.208 Sum_probs=153.2
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHH-----hcCCCCCHHHHHHHHHHHHhhhc--CCCceeeEEE
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQH-----QHNKQMSCPGMAQLLSNTLYYKR--FFPYYSFNVL 76 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~-----~~~~~i~~~~la~~is~~ly~~r--~~P~~v~~lv 76 (183)
...+||++|++|++|+++|..+|++.+.+++|.+++.|++ +++++++++.+|+++++++|++| +|||++++||
T Consensus 37 ~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lv 116 (233)
T 1ryp_N 37 NGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIV 116 (233)
T ss_dssp SCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEE
T ss_pred CCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchhhcCCCCCHHHHHHHHHHHHHHhcCCCCCceEEEEE
Confidence 4678999999999999999999999999999999999999 89999999999999999999977 7899999999
Q ss_pred EEEeCCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhc
Q 030109 77 GGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERD 156 (183)
Q Consensus 77 aG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd 156 (183)
||||++++|+||++||+|++.+++++|+|+|+++++++||+.|++++. .++||++||++++++||..+.+||
T Consensus 117 aG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~--------~~~ms~eea~~la~~al~~~~~rd 188 (233)
T 1ryp_N 117 AGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESD--------IPKTTVQVAEEAIVNAMRVLYYRD 188 (233)
T ss_dssp EEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTCSSGGG--------GGGCCHHHHHHHHHHHHHHHHHHB
T ss_pred EEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhhccccc--------cCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999987679999999999999999999999999999999999985100 017999999999999999999999
Q ss_pred cccCCcEEEEEEcCC-CeEEE
Q 030109 157 IYTGDKLEIVVLNKG-GIHRE 176 (183)
Q Consensus 157 ~~~g~~i~I~ii~k~-g~~~~ 176 (183)
..++++++|++|+++ |++..
T Consensus 189 ~~sg~~i~v~vi~~~~g~~~~ 209 (233)
T 1ryp_N 189 ARSSRNFSLAIIDKNTGLTFK 209 (233)
T ss_dssp TTCCSEEEEEEEETTTEEEEE
T ss_pred ccCCCcEEEEEEECCCCeEEc
Confidence 999999999999999 87654
No 19
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=2.4e-38 Score=252.49 Aligned_cols=157 Identities=20% Similarity=0.261 Sum_probs=150.2
Q ss_pred ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCCceeeEEEEEEeCCCc
Q 030109 5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGK 84 (183)
Q Consensus 5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~~P~~v~~lvaG~D~~g~ 84 (183)
..+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.+++++++.+|.++ +||++++||||||++ +
T Consensus 30 ~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~~-~p~~v~~lvaG~D~~-g 107 (222)
T 1ryp_I 30 NCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQ-GHIGAYLIVAGVDPT-G 107 (222)
T ss_dssp SCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTT-TCSCEEEEEEEEETT-E
T ss_pred CcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcC-CCCCeeEEEEEEeCC-C
Confidence 56899999999999999999999999999999999999999999999999999999998865 799999999999974 5
Q ss_pred eEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCcEE
Q 030109 85 GCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLE 164 (183)
Q Consensus 85 p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~i~ 164 (183)
|+||++||+|++.+++++|+|+|++.++++||+.|++ +||++||++++++||..+.+||..++++++
T Consensus 108 p~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~-------------~ms~eeA~~la~~al~~~~~~d~~sg~~i~ 174 (222)
T 1ryp_I 108 SHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQ-------------DLTKEEAIKLASDAIQAGIWNDLGSGSNVD 174 (222)
T ss_dssp EEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCS-------------SCCHHHHHHHHHHHHHHHHHHCTTCCSCEE
T ss_pred CEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCC-------------CcCHHHHHHHHHHHHHHHHhccccCCCcEE
Confidence 9999999999999999999999999999999999997 999999999999999999999999999999
Q ss_pred EEEEcCCC-eEEE
Q 030109 165 IVVLNKGG-IHRE 176 (183)
Q Consensus 165 I~ii~k~g-~~~~ 176 (183)
|++|+++| ++..
T Consensus 175 v~vi~~~g~~~~~ 187 (222)
T 1ryp_I 175 VCVMEIGKDAEYL 187 (222)
T ss_dssp EEEEETTSCEEEE
T ss_pred EEEEECCCCEEEE
Confidence 99999999 7643
No 20
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=2.2e-38 Score=256.06 Aligned_cols=164 Identities=15% Similarity=0.191 Sum_probs=152.5
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--hhhc--CCCceeeEEEEEE
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTL--YYKR--FFPYYSFNVLGGL 79 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~l--y~~r--~~P~~v~~lvaG~ 79 (183)
...+||++|++|++++++|..+|++.+.++++.+++.|+++++++++++.+|+++++++ |+++ +|||+|++|||||
T Consensus 64 ~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~ 143 (246)
T 1iru_A 64 STVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGI 143 (246)
T ss_dssp GGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEE
T ss_pred CccCceEEECCCEEEEEeccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEE
Confidence 35689999999999999999999999999999999999999999999999999999985 6655 7899999999999
Q ss_pred eCCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 030109 80 DNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYT 159 (183)
Q Consensus 80 D~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~ 159 (183)
|++++|+||++||+|++.+++++|+|+|++.++++||++|++ .++|+++||++++++||..+.+|| .+
T Consensus 144 D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~-----------~~~ms~eea~~la~~al~~~~~rd-~s 211 (246)
T 1iru_A 144 DEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKK-----------KFDWTFEQTVETAITCLSTVLSID-FK 211 (246)
T ss_dssp ETTTEEEEEEECTTSCEEEBSEEEEETTHHHHHHHHHHHTTS-----------CCCCCHHHHHHHHHHHHHHHTTCC-CC
T ss_pred eCCCCeEEEEEcCCeeEEEeeEEEECCCcHHHHHHHHHhhcc-----------cCCCCHHHHHHHHHHHHHHHhccc-CC
Confidence 986779999999999999999999999999999999999985 238999999999999999999999 88
Q ss_pred CCcEEEEEEcCCCeEEEeee
Q 030109 160 GDKLEIVVLNKGGIHREYME 179 (183)
Q Consensus 160 g~~i~I~ii~k~g~~~~~~~ 179 (183)
+++++|++|+++|+..+.++
T Consensus 212 g~~i~v~vi~~~g~~~~~l~ 231 (246)
T 1iru_A 212 PSEIEVGVVTVENPKFRILT 231 (246)
T ss_dssp TTSEEEEEEETTEEEEEECC
T ss_pred CCcEEEEEEECCCCeEEECC
Confidence 99999999999998655543
No 21
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=3.8e-38 Score=246.97 Aligned_cols=162 Identities=20% Similarity=0.245 Sum_probs=151.6
Q ss_pred CcccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCCceeeEEEEEEeCC
Q 030109 3 SFFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNE 82 (183)
Q Consensus 3 ~~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~~P~~v~~lvaG~D~~ 82 (183)
+...+||++|++|++++++|+.+|++.+.+++|.+++.|+++++++++++.+++++++++|.+| +||++++||||||++
T Consensus 28 ~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~~-~p~~v~~lvaG~D~~ 106 (199)
T 3unf_N 28 NRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWDQR 106 (199)
T ss_dssp ESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHTT-TTCCCCEEEEEEETT
T ss_pred ccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcC-CCceEEEEEEEEeCC
Confidence 3467899999999999999999999999999999999999999999999999999999999876 599999999999987
Q ss_pred CceEEEEEcCCCceeeeC-eEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCC
Q 030109 83 GKGCVYTYDAVGSYERVG-YSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGD 161 (183)
Q Consensus 83 g~p~Ly~iD~~G~~~~~~-~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~ 161 (183)
++|+||+ |+|++..+. ++++|+|+++++++||++|++ +||++||++++++||..+.+||..+++
T Consensus 107 ~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~-------------~ms~eea~~la~~al~~~~~~d~~sg~ 171 (199)
T 3unf_N 107 EGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKP-------------GMTPEECRRFTTNAITLAMNRDGSSGG 171 (199)
T ss_dssp TEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCS-------------SCCHHHHHHHHHHHHHHHHHHCTTCCS
T ss_pred CCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCC-------------CCCHHHHHHHHHHHHHHHHHhccccCC
Confidence 7899999 999987765 666799999999999999997 999999999999999999999999999
Q ss_pred cEEEEEEcCCCeEEEeeec
Q 030109 162 KLEIVVLNKGGIHREYMEL 180 (183)
Q Consensus 162 ~i~I~ii~k~g~~~~~~~~ 180 (183)
+++|++|+++|++++.++.
T Consensus 172 ~i~v~vi~~~g~~~~~l~~ 190 (199)
T 3unf_N 172 VIYLVTITAAGVDHRVILG 190 (199)
T ss_dssp CEEEEEECSSCEEEEEECG
T ss_pred CeEEEEEcCCCEEEEEcCc
Confidence 9999999999998877753
No 22
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=1.4e-37 Score=253.64 Aligned_cols=155 Identities=21% Similarity=0.260 Sum_probs=148.6
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCCceeeEEEEEEeCCC
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEG 83 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~~P~~v~~lvaG~D~~g 83 (183)
...+||++|++|++|+++|+.+|++.+.++++.+++.|+++++++++++.+++++++.+|.++ +||++++||||||++
T Consensus 58 ~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~~-~~~gv~llvaG~D~~- 135 (261)
T 3nzj_H 58 KNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQ-GHIGAYLIVAGVDPT- 135 (261)
T ss_dssp TTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTT-TCSCEEEEEEEEETT-
T ss_pred CCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHHHHHHHHHHHhc-CcccEEEEEEEEeCC-
Confidence 356899999999999999999999999999999999999999999999999999999998764 699999999999985
Q ss_pred ceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCcE
Q 030109 84 KGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKL 163 (183)
Q Consensus 84 ~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~i 163 (183)
+|+||++||+|++.+++++|+|+|++.++++||+.|++ +||++||++++++||..+.+||..+++++
T Consensus 136 Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~-------------~ms~eEA~~la~~al~~a~~rD~~sg~~i 202 (261)
T 3nzj_H 136 GSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQ-------------DLTKEEAIKLASDAIQAGIWNDLGSGSNV 202 (261)
T ss_dssp EEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCS-------------SCCHHHHHHHHHHHHHHHHHHCTTCCSCE
T ss_pred CCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhcc-------------CCCHHHHHHHHHHHHHHHHhhCCCCCCcE
Confidence 59999999999999999999999999999999999997 99999999999999999999999999999
Q ss_pred EEEEEcCCCe
Q 030109 164 EIVVLNKGGI 173 (183)
Q Consensus 164 ~I~ii~k~g~ 173 (183)
+|++|+++|.
T Consensus 203 ev~vI~kdg~ 212 (261)
T 3nzj_H 203 DVCVMEIGKD 212 (261)
T ss_dssp EEEEEETTSC
T ss_pred EEEEEECCCc
Confidence 9999999993
No 23
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=8.8e-38 Score=252.23 Aligned_cols=158 Identities=18% Similarity=0.192 Sum_probs=148.5
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh--h--cCCCceeeEEEEEE
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYY--K--RFFPYYSFNVLGGL 79 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~--~--r~~P~~v~~lvaG~ 79 (183)
...+||++|++|++|+++|..+|++.++++++.+++.|+++++++++++.+|+++++++|. + ++|||++++|||||
T Consensus 60 ~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~ 139 (244)
T 1ryp_C 60 TSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGY 139 (244)
T ss_dssp TCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEE
T ss_pred CCCCcEEEECCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEE
Confidence 4568999999999999999999999999999999999999999999999999999999954 2 36899999999999
Q ss_pred eCCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 030109 80 DNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYT 159 (183)
Q Consensus 80 D~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~ 159 (183)
|++++|+||++||+|++.+++++|+|+|+++++++||++|++ +||++||++++++||..+.+||..+
T Consensus 140 D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~-------------~ms~eea~~la~~al~~~~~rd~~s 206 (244)
T 1ryp_C 140 DDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKD-------------DMKVDDAIELALKTLSKTTDSSALT 206 (244)
T ss_dssp ETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCT-------------TCCHHHHHHHHHHHHHHHCSSSSCC
T ss_pred cCCCCCEEEEECCCccEEeeeEEEECCCcHHHHHHHHHhhhc-------------CCCHHHHHHHHHHHHHHHhccccCC
Confidence 955779999999999999999999999999999999999997 9999999999999999999996667
Q ss_pred CCcEEEEEEc--CCCeE
Q 030109 160 GDKLEIVVLN--KGGIH 174 (183)
Q Consensus 160 g~~i~I~ii~--k~g~~ 174 (183)
+++++|++|+ ++|..
T Consensus 207 g~~i~v~vi~~~~~~~~ 223 (244)
T 1ryp_C 207 YDRLEFATIRKGANDGE 223 (244)
T ss_dssp GGGEEEEEEECCSSSSS
T ss_pred CCcEEEEEEEeecCCCc
Confidence 9999999999 99873
No 24
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=7e-38 Score=251.21 Aligned_cols=156 Identities=16% Similarity=0.221 Sum_probs=147.4
Q ss_pred ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--hhhc--CCCceeeEEEEEEe
Q 030109 5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTL--YYKR--FFPYYSFNVLGGLD 80 (183)
Q Consensus 5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~l--y~~r--~~P~~v~~lvaG~D 80 (183)
..+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.+|+++++++ |+++ +|||++++||||||
T Consensus 60 ~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D 139 (233)
T 1iru_B 60 SVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWN 139 (233)
T ss_dssp TCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEEC
T ss_pred cCCeEEEECCCEEEEEEEccHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEe
Confidence 4689999999999999999999999999999999999999999999999999999999 4443 68999999999999
Q ss_pred CCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccC
Q 030109 81 NEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTG 160 (183)
Q Consensus 81 ~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g 160 (183)
+ ++|+||++||+|++.+++++++|+|+++++++||++|++ +||++||++++++||..+.+|| .++
T Consensus 140 ~-~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~~-------------~ms~eea~~la~~al~~~~~~d-~sg 204 (233)
T 1iru_B 140 E-GRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNE-------------DLELEDAIHTAILTLKESFEGQ-MTE 204 (233)
T ss_dssp S-SSEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCT-------------TCCHHHHHHHHHHHHHTTCCSC-CCS
T ss_pred C-CCCeEEEECCCCCEEEeeEEEECCCCHHHHHHHHHHhcc-------------CCCHHHHHHHHHHHHHHHhhcc-CCC
Confidence 5 459999999999999999999999999999999999997 9999999999999999999999 679
Q ss_pred CcEEEEEEcCCCeEE
Q 030109 161 DKLEIVVLNKGGIHR 175 (183)
Q Consensus 161 ~~i~I~ii~k~g~~~ 175 (183)
++++|++|+++|++.
T Consensus 205 ~~i~v~vi~~~g~~~ 219 (233)
T 1iru_B 205 DNIEVGICNEAGFRR 219 (233)
T ss_dssp SSEEEEEEETTEEEE
T ss_pred CCEEEEEEECCCEEE
Confidence 999999999999554
No 25
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=6.7e-38 Score=256.14 Aligned_cols=165 Identities=15% Similarity=0.208 Sum_probs=153.0
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHH-----hcCCCCCHHHHHHHHHHHHhhhc--CCCceeeEEE
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQH-----QHNKQMSCPGMAQLLSNTLYYKR--FFPYYSFNVL 76 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~-----~~~~~i~~~~la~~is~~ly~~r--~~P~~v~~lv 76 (183)
...+||++|+++++|+++|..+|++.+++++|.+++.|++ +++++++++.+|+++++++|++| +|||++++||
T Consensus 70 ~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lv 149 (266)
T 1g0u_M 70 NGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIV 149 (266)
T ss_dssp CCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEE
T ss_pred CCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhccchhhcCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEE
Confidence 3578999999999999999999999999999999999998 89999999999999999999877 7899999999
Q ss_pred EEEeCCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhc
Q 030109 77 GGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERD 156 (183)
Q Consensus 77 aG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd 156 (183)
||||++++|+||++||+|++.+++++|+|+|+++++++||+.|++++. ..+||++||++++++||..+.+||
T Consensus 150 aG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~--------~~~ms~eeA~~la~~al~~a~~rd 221 (266)
T 1g0u_M 150 AGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESD--------IPKTTVQVAEEAIVNAMRVLYYRD 221 (266)
T ss_dssp EEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHHHTTTCSSGGG--------GGGCCHHHHHHHHHHHHHHHHHHB
T ss_pred EEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHHHHHhhccccc--------CCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999987679999999999999999999999999999999999985100 017999999999999999999999
Q ss_pred cccCCcEEEEEEcCC-CeEEE
Q 030109 157 IYTGDKLEIVVLNKG-GIHRE 176 (183)
Q Consensus 157 ~~~g~~i~I~ii~k~-g~~~~ 176 (183)
..++++++|++|+++ |++..
T Consensus 222 ~~sg~~i~v~vI~k~~g~~~~ 242 (266)
T 1g0u_M 222 ARSSRNFSLAIIDKNTGLTFK 242 (266)
T ss_dssp TTCCSEEEEEEEETTTEEEEE
T ss_pred CCCCCcEEEEEEECCCCeEEc
Confidence 999999999999999 87654
No 26
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=1.5e-37 Score=249.71 Aligned_cols=156 Identities=20% Similarity=0.280 Sum_probs=149.3
Q ss_pred ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcCCCceeeEEEEEEeCCCc
Q 030109 5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGK 84 (183)
Q Consensus 5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~~P~~v~~lvaG~D~~g~ 84 (183)
..+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.+++++++.+|.++ +||++++||||||++ +
T Consensus 30 ~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~-~~~~v~llvaG~D~~-g 107 (234)
T 1iru_I 30 NCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYR-GYIGAALVLGGVDVT-G 107 (234)
T ss_dssp SCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHTT-TCSCEEEEEEEECSS-C
T ss_pred cccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC-CCCceeEEEEEEcCC-C
Confidence 46899999999999999999999999999999999999999999999999999999998865 599999999999975 5
Q ss_pred eEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCcEE
Q 030109 85 GCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLE 164 (183)
Q Consensus 85 p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~i~ 164 (183)
|+||++||+|++.+++++|+|+|++.++++||+.|++ +||++||++++++||..+.+||..++++++
T Consensus 108 p~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~-------------~ms~eeA~~la~~al~~a~~~d~~sg~~i~ 174 (234)
T 1iru_I 108 PHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRP-------------DMEEEEAKNLVSEAIAAGIFNDLGSGSNID 174 (234)
T ss_dssp EEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCT-------------TCCHHHHHTHHHHHHHHHHHHCTTCCSCEE
T ss_pred CEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccC-------------CCCHHHHHHHHHHHHHHHHHhcccCCCCEE
Confidence 9999999999999999999999999999999999997 999999999999999999999999999999
Q ss_pred EEEEcCCCeEE
Q 030109 165 IVVLNKGGIHR 175 (183)
Q Consensus 165 I~ii~k~g~~~ 175 (183)
|++|+++|++.
T Consensus 175 v~vi~k~g~~~ 185 (234)
T 1iru_I 175 LCVISKNKLDF 185 (234)
T ss_dssp EEEEETTEEEC
T ss_pred EEEEECCcEEE
Confidence 99999999863
No 27
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=1.5e-37 Score=249.34 Aligned_cols=155 Identities=19% Similarity=0.213 Sum_probs=147.1
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhc----CCCceeeEEEEEE
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKR----FFPYYSFNVLGGL 79 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r----~~P~~v~~lvaG~ 79 (183)
...+||++|++|++++++|..+|++.+.++++.+++.|+++++++++++.+|+++++++|..+ .|||++++|||||
T Consensus 62 ~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~ 141 (233)
T 1yar_A 62 NSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGI 141 (233)
T ss_dssp TTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEE
T ss_pred cccCeEEEecCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEE
Confidence 356899999999999999999999999999999999999999999999999999999997533 5899999999999
Q ss_pred eCCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 030109 80 DNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYT 159 (183)
Q Consensus 80 D~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~ 159 (183)
|+ ++|+||.+||+|++.+++++|+|+|+++++++||+.|++ +||++||++++++||..+.+||. +
T Consensus 142 D~-~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~~-------------~~s~eea~~la~~al~~~~~~d~-s 206 (233)
T 1yar_A 142 DQ-IGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKE-------------NLPEKEAVTLGIKALKSSLEEGE-E 206 (233)
T ss_dssp CS-SCEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCT-------------TCCHHHHHHHHHHHHHHTSCSSC-C
T ss_pred eC-CCCEEEEECCCCCEEeeeEEEEcCCcHHHHHHHHHHhcc-------------CCCHHHHHHHHHHHHHHHhhccC-C
Confidence 97 469999999999999999999999999999999999997 99999999999999999999997 7
Q ss_pred CCcEEEEEEcCCCe
Q 030109 160 GDKLEIVVLNKGGI 173 (183)
Q Consensus 160 g~~i~I~ii~k~g~ 173 (183)
+++++|++|+++|.
T Consensus 207 ~~~i~v~vi~~~~~ 220 (233)
T 1yar_A 207 LKAPEIASITVGNK 220 (233)
T ss_dssp CCCCEEEEEETTSC
T ss_pred CCcEEEEEEECCCC
Confidence 99999999999994
No 28
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=1.8e-37 Score=250.08 Aligned_cols=156 Identities=16% Similarity=0.112 Sum_probs=147.6
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhc----------CCCceee
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKR----------FFPYYSF 73 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r----------~~P~~v~ 73 (183)
...+||++|++|++|+++|+.+|++.++++++.+++.|+++++++++++.+++++++++|.++ .|||+++
T Consensus 54 ~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~ 133 (242)
T 1ryp_E 54 DSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVA 133 (242)
T ss_dssp GGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEE
T ss_pred ccCCceEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEE
Confidence 456899999999999999999999999999999999999999999999999999999987521 5799999
Q ss_pred EEEEEEeCCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 030109 74 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASAT 153 (183)
Q Consensus 74 ~lvaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~ 153 (183)
+||||||++++|+||++||+|++.+++++|+|+|+++++++||+.|++ +||++||++++++||..+.
T Consensus 134 ~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~-------------~ms~eea~~la~~al~~~~ 200 (242)
T 1ryp_E 134 LLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHS-------------SLTLKEAELLVLKILKQVM 200 (242)
T ss_dssp EEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCT-------------TCCHHHHHHHHHHHHHHHC
T ss_pred EEEEEEeCCCCCEEEEECCCCCEeccCEEEECCCCHHHHHHHHHhhcc-------------CCCHHHHHHHHHHHHHHHh
Confidence 999999966779999999999999999999999999999999999997 9999999999999999999
Q ss_pred hhccccCCcEEEEEEcCCCe
Q 030109 154 ERDIYTGDKLEIVVLNKGGI 173 (183)
Q Consensus 154 ~rd~~~g~~i~I~ii~k~g~ 173 (183)
+| ..++++++|++|+++|.
T Consensus 201 ~~-~~sg~~i~v~vi~~~~~ 219 (242)
T 1ryp_E 201 EE-KLDENNAQLSCITKQDG 219 (242)
T ss_dssp SS-CCCTTSEEEEEEETTTE
T ss_pred hc-cCCCCcEEEEEEECCCC
Confidence 99 66899999999999997
No 29
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=2.7e-37 Score=251.91 Aligned_cols=157 Identities=17% Similarity=0.180 Sum_probs=149.4
Q ss_pred ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhc----CCCceeeEEEEEEe
Q 030109 5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKR----FFPYYSFNVLGGLD 80 (183)
Q Consensus 5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r----~~P~~v~~lvaG~D 80 (183)
..+||++|++|++|+++|+.+|++.++++++.+++.|+++++++++++.+|+++++++|.++ .|||+|++||||||
T Consensus 61 ~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D 140 (261)
T 1iru_C 61 FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWD 140 (261)
T ss_dssp SCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEE
T ss_pred CCccEEEecCCEEEEEeEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEe
Confidence 47899999999999999999999999999999999999999999999999999999997653 68999999999999
Q ss_pred CCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccC
Q 030109 81 NEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTG 160 (183)
Q Consensus 81 ~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g 160 (183)
++++|+||++||+|++.+++++|+|+|+.+++++||++|++ .+||++||++++++||..+.+||..++
T Consensus 141 ~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~------------~~ms~eeA~~la~~al~~~~~~d~~sg 208 (261)
T 1iru_C 141 KHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE------------GEMTLKSALALAIKVLNKTMDVSKLSA 208 (261)
T ss_dssp TTTEEEEEEEETTTEEEECSEEEESTTTTHHHHHHHHHCCT------------TCCCHHHHHHHHHHHHHHSSSCTTCCS
T ss_pred CCCCcEEEEECCCceEEeeeeEEeCcccHHHHHHHHHhhcc------------CCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence 76779999999999999999999999999999999999985 179999999999999999999999999
Q ss_pred CcEEEEEEcCCCe
Q 030109 161 DKLEIVVLNKGGI 173 (183)
Q Consensus 161 ~~i~I~ii~k~g~ 173 (183)
++++|++|+++|.
T Consensus 209 ~~i~v~vi~~~~~ 221 (261)
T 1iru_C 209 EKVEIATLTRENG 221 (261)
T ss_dssp TTCEEEEEECCSS
T ss_pred CcEEEEEEEcCCC
Confidence 9999999999985
No 30
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=7.1e-37 Score=245.85 Aligned_cols=159 Identities=19% Similarity=0.208 Sum_probs=148.7
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhc---CCCceeeEEEEEEe
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKR---FFPYYSFNVLGGLD 80 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r---~~P~~v~~lvaG~D 80 (183)
...+||++|+++++|+++|+.+|++.++++++.+++.|+++++++++++.+|+++++++|.++ +|||+|++||||||
T Consensus 29 ~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~rp~~v~~lvaG~D 108 (235)
T 1q5q_H 29 RDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYD 108 (235)
T ss_dssp SCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTHHHHTTTCCEEEEEEEEC
T ss_pred CCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHHHHhhhcccceEEEEEEEE
Confidence 356899999999999999999999999999999999999999999999999999999998754 68999999999999
Q ss_pred CCCc-----eEEEEEcCCCceeee--CeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 030109 81 NEGK-----GCVYTYDAVGSYERV--GYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASAT 153 (183)
Q Consensus 81 ~~g~-----p~Ly~iD~~G~~~~~--~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~ 153 (183)
++++ |+||++||+|++.++ +++|+|+|+++++++||+.|++ +||++||++++++||..+.
T Consensus 109 ~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~-------------~ms~eeA~~la~~al~~a~ 175 (235)
T 1q5q_H 109 LDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSP-------------DSDEETALRAAIESLYDAA 175 (235)
T ss_dssp TTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCT-------------TCCHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCC-------------CCCHHHHHHHHHHHHHHHH
Confidence 8766 999999999999999 9999999999999999999997 9999999999999999999
Q ss_pred hhccccCCc--E-----EEEEEcCCCeEE
Q 030109 154 ERDIYTGDK--L-----EIVVLNKGGIHR 175 (183)
Q Consensus 154 ~rd~~~g~~--i-----~I~ii~k~g~~~ 175 (183)
+||..+++. + +|++|+++|++.
T Consensus 176 ~~d~~sg~~~~i~~~~~ev~vi~~~g~~~ 204 (235)
T 1q5q_H 176 DDDSATGGPDLTRGIYPTAVTITQAGAVH 204 (235)
T ss_dssp HHCTTTCCCBTTTTBCCEEEEEETTEEEE
T ss_pred hhCcccCCcccccccccEEEEEeCCCeEE
Confidence 999887742 2 999999999764
No 31
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=5.4e-37 Score=248.47 Aligned_cols=157 Identities=15% Similarity=0.118 Sum_probs=142.1
Q ss_pred CcccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHH---hhhcCCCceeeEEEEE
Q 030109 3 SFFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHN-KQMSCPGMAQLLSNTL---YYKRFFPYYSFNVLGG 78 (183)
Q Consensus 3 ~~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~-~~i~~~~la~~is~~l---y~~r~~P~~v~~lvaG 78 (183)
+...+||++|++|++|+++|+.+|++.+.+.++.+++.|++.++ .+++++.|++++++.+ |++++|||+|++||||
T Consensus 47 ~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~gv~~liaG 126 (248)
T 3mi0_A 47 SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAE 126 (248)
T ss_dssp CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEE
T ss_pred CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEE
Confidence 34678999999999999999999999999999999999999999 8999999999999554 6667889999999999
Q ss_pred EeC---CCceEEEEEcCCCceee-eCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-
Q 030109 79 LDN---EGKGCVYTYDAVGSYER-VGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASAT- 153 (183)
Q Consensus 79 ~D~---~g~p~Ly~iD~~G~~~~-~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~- 153 (183)
||+ +++|+||++||+|++.+ ++++|+|+|++.++++||++|++ +|+++||++++++||..+.
T Consensus 127 ~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~~Le~~y~~-------------~mt~eeai~la~~aL~~~~~ 193 (248)
T 3mi0_A 127 VAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYAE-------------NASLTDALRIAVAALRAGSA 193 (248)
T ss_dssp CCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHHHHHHHCCT-------------TCCHHHHHHHHHHHHHHC--
T ss_pred EcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHHHHHhhcCC-------------CCCHHHHHHHHHHHHHHHHh
Confidence 997 36799999999999995 99999999999999999999998 9999999999999999999
Q ss_pred ------hhccccCCcEEEEEEcCCCe
Q 030109 154 ------ERDIYTGDKLEIVVLNKGGI 173 (183)
Q Consensus 154 ------~rd~~~g~~i~I~ii~k~g~ 173 (183)
+|+ .++++++|+||+++|.
T Consensus 194 ~~~~~~~~~-~~~~~iev~vv~~~g~ 218 (248)
T 3mi0_A 194 DTSGGDQPT-LGVASLEVAVLDANRP 218 (248)
T ss_dssp -----------CCTTEEEEEEETTSS
T ss_pred hcccCcccc-cCCCcEEEEEEECCCC
Confidence 665 5689999999999983
No 32
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=1.5e-36 Score=244.75 Aligned_cols=153 Identities=16% Similarity=0.209 Sum_probs=144.5
Q ss_pred ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhc----CCCceeeEEEEEEe
Q 030109 5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKR----FFPYYSFNVLGGLD 80 (183)
Q Consensus 5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r----~~P~~v~~lvaG~D 80 (183)
..+||++|++|++|+++|+.+|++.+.++++.+++.|+++++++++++.+|+++++++|.++ +|||++++||||||
T Consensus 58 ~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D 137 (241)
T 1ryp_D 58 TPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFD 137 (241)
T ss_dssp SCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECC
T ss_pred CcCcEEEecCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEc
Confidence 56899999999999999999999999999999999999999999999999999999998642 47999999999999
Q ss_pred CC-CceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHccc---CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhc
Q 030109 81 NE-GKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQL---KSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERD 156 (183)
Q Consensus 81 ~~-g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~---~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd 156 (183)
++ ++|+||++||+|++.+++++|+|+|++.++++||++| ++ +||++||++++++||..+.+
T Consensus 138 ~~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~-------------~ms~eea~~l~~~al~~~~~-- 202 (241)
T 1ryp_D 138 PRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEP-------------PATVEECVKLTVRSLLEVVQ-- 202 (241)
T ss_dssp TTCCSCEEEEECTTSCEEEBSEEEESTTHHHHHHHHHTTCCTTSC-------------CCSHHHHHHHHHHHHHHHHC--
T ss_pred CCCCCeeEEEECCCCCEEEeeeEEECCCcHHHHHHHHHhhhcccC-------------CCCHHHHHHHHHHHHHHHhc--
Confidence 75 6799999999999999999999999999999999999 66 99999999999999999986
Q ss_pred cccCCcEEEEEEcCCCe
Q 030109 157 IYTGDKLEIVVLNKGGI 173 (183)
Q Consensus 157 ~~~g~~i~I~ii~k~g~ 173 (183)
.++++++|++|+++|.
T Consensus 203 -~sg~~i~v~vi~~~~~ 218 (241)
T 1ryp_D 203 -TGAKNIEITVVKPDSD 218 (241)
T ss_dssp -SCSTTEEEEEEETTTE
T ss_pred -CCCCcEEEEEEECCCc
Confidence 6799999999999973
No 33
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=5.4e-37 Score=249.22 Aligned_cols=154 Identities=12% Similarity=0.049 Sum_probs=146.1
Q ss_pred ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhc----CCCceeeEEEEEEe
Q 030109 5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKR----FFPYYSFNVLGGLD 80 (183)
Q Consensus 5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r----~~P~~v~~lvaG~D 80 (183)
..+||++|++|++|+++|+.+|++.++++++.+++.|+++++++++++.+|+++++++|.++ +|||+|++||||||
T Consensus 62 ~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D 141 (254)
T 1iru_G 62 SNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYS 141 (254)
T ss_dssp TTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEE
T ss_pred cCCcEEEECCCEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEe
Confidence 46899999999999999999999999999999999999999999999999999999997643 68999999999999
Q ss_pred CCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccC
Q 030109 81 NEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTG 160 (183)
Q Consensus 81 ~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g 160 (183)
++++|+||++||+|++.+++++|+|+|+++++++||+.|++ +||++||++++++||..+.++|..++
T Consensus 142 ~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~-------------~ms~eea~~la~~al~~~~~~~~~~~ 208 (254)
T 1iru_G 142 VNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMK-------------EMTCRDIVKEVAKIIYIVHDEVKDKA 208 (254)
T ss_dssp TTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHTTSCGG-------------GCCHHHHHHHHHHHHHHHSCSSSSCC
T ss_pred CCCCcEEEEEcCCCCEEeeeeEEecCccHHHHHHHHHhccC-------------CCCHHHHHHHHHHHHHHHHhhccCCC
Confidence 66779999999999999999999999999999999999986 89999999999999999998887778
Q ss_pred CcEEEEEEcCC
Q 030109 161 DKLEIVVLNKG 171 (183)
Q Consensus 161 ~~i~I~ii~k~ 171 (183)
++++|++|+++
T Consensus 209 ~~iev~vi~~~ 219 (254)
T 1iru_G 209 FELELSWVGEL 219 (254)
T ss_dssp EEEEEEECBTT
T ss_pred CcEEEEEEEcC
Confidence 89999999987
No 34
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=5.1e-37 Score=247.40 Aligned_cols=155 Identities=18% Similarity=0.164 Sum_probs=146.7
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--hhhc-------CCCceeeE
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTL--YYKR-------FFPYYSFN 74 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~l--y~~r-------~~P~~v~~ 74 (183)
...+||++|++|++++++|..+|++.++++++.+++.|+++++++++++.+|+++++++ |+++ .|||++++
T Consensus 62 ~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~ 141 (241)
T 1iru_E 62 SSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVAL 141 (241)
T ss_dssp TSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEE
T ss_pred cccceEEEEcCCEEEEEeeChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEE
Confidence 45689999999999999999999999999999999999999999999999999999999 5433 57999999
Q ss_pred EEEEEeCCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 030109 75 VLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATE 154 (183)
Q Consensus 75 lvaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~ 154 (183)
|||||| +++|+||++||+|++.+++++|+|+|+++++++||+.|++ +||++||++++++||..+.+
T Consensus 142 lvaG~D-~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~-------------~ms~eea~~la~~al~~~~~ 207 (241)
T 1iru_E 142 LFGGVD-EKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHK-------------SMTLKEAIKSSLIILKQVME 207 (241)
T ss_dssp EEEEEE-TTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCT-------------TCCHHHHHHHHHHHHHHHCS
T ss_pred EEEEEe-CCCCEEEEECCCCcEEecceEEECCCcHHHHHHHHHHhcc-------------CCCHHHHHHHHHHHHHHHhh
Confidence 999999 5679999999999999999999999999999999999997 99999999999999999999
Q ss_pred hccccCCcEEEEEEcCCCe
Q 030109 155 RDIYTGDKLEIVVLNKGGI 173 (183)
Q Consensus 155 rd~~~g~~i~I~ii~k~g~ 173 (183)
| ..++++++|++|+++|+
T Consensus 208 ~-~~sg~~i~v~vi~~~~~ 225 (241)
T 1iru_E 208 E-KLNATNIELATVQPGQN 225 (241)
T ss_dssp S-CCCTTSEEEEEECSSSC
T ss_pred c-cCCCCCEEEEEEECCCC
Confidence 9 67899999999999997
No 35
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=6.3e-37 Score=250.18 Aligned_cols=160 Identities=16% Similarity=0.256 Sum_probs=148.5
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh--hc--CCCceeeEEEEEE
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYY--KR--FFPYYSFNVLGGL 79 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~--~r--~~P~~v~~lvaG~ 79 (183)
...+||++|++|++|+++|+.+|++.+++++|.+++.|++.++++++++.+|++++++++. ++ +|||+|++|||||
T Consensus 66 ~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~ 145 (264)
T 3h4p_A 66 RSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGI 145 (264)
T ss_dssp TTCCCEEEEETTEEEEEEECSHHHHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEE
T ss_pred CccccEEEecCcEEEEeccchHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEE
Confidence 4678999999999999999999999999999999999999999999999999999999854 32 5899999999999
Q ss_pred eCCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 030109 80 DNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYT 159 (183)
Q Consensus 80 D~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~ 159 (183)
|+ ++|+||++||+|++.+++++|+|+|+++++++||+.|++ +||++||++++++||..+.+| .+
T Consensus 146 D~-~gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~-------------~ms~eea~~la~~al~~a~~~--~s 209 (264)
T 3h4p_A 146 DK-NEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRD-------------DITLDEGLELAITALTKANED--IK 209 (264)
T ss_dssp ET-TEEEEEEECTTCCCEEESEEEESTTHHHHTTTHHHHCCT-------------TCCSHHHHHHHHHHHHHHSSS--CC
T ss_pred eC-CcCEEEEECCCceEEecCeEEECCCHHHHHHHHHHhccC-------------CCCHHHHHHHHHHHHHHHHhc--cC
Confidence 96 469999999999999999999999999999999999997 999999999999999999987 68
Q ss_pred CCcEEEEEEcCCCeEEEeee
Q 030109 160 GDKLEIVVLNKGGIHREYME 179 (183)
Q Consensus 160 g~~i~I~ii~k~g~~~~~~~ 179 (183)
+++++|++|++++...+.++
T Consensus 210 g~~iev~vi~~~~~~~~~l~ 229 (264)
T 3h4p_A 210 PENVDVCIITVKDAQFKKIP 229 (264)
T ss_dssp TTSEEEEEEETTTTEEEECC
T ss_pred CCeEEEEEEEeCCCcEEECC
Confidence 99999999999876555543
No 36
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=2.1e-36 Score=244.39 Aligned_cols=157 Identities=19% Similarity=0.193 Sum_probs=147.6
Q ss_pred cceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh--hc--CCCceeeEEEEEEeC
Q 030109 6 YILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYY--KR--FFPYYSFNVLGGLDN 81 (183)
Q Consensus 6 ~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~--~r--~~P~~v~~lvaG~D~ 81 (183)
.+||++|++|++|+++|+.+|++.+.++++.+++.|+++++++++++.+|++++++++. ++ +|||++++||||||+
T Consensus 60 ~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~ 139 (244)
T 1ryp_G 60 NVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK 139 (244)
T ss_dssp SCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET
T ss_pred cCceEEecCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeC
Confidence 38999999999999999999999999999999999999999999999999999999944 23 589999999999996
Q ss_pred CCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcc---cCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccc
Q 030109 82 EGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQ---LKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIY 158 (183)
Q Consensus 82 ~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~---~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~ 158 (183)
++|+||++||+|++.+++++|+|+|++.++++||+. |++ +||++||++++++||..+.+||..
T Consensus 140 -~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~-------------~ms~eea~~la~~al~~~~~~d~~ 205 (244)
T 1ryp_G 140 -NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPE-------------GLSAREAVKQAAKIIYLAHEDNKE 205 (244)
T ss_dssp -TEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTT-------------CCCHHHHHHHHHHHHHHHGGGGTT
T ss_pred -CcCEEEEECCCCCEEEeeEEEECCChHHHHHHHHHhHhhcCC-------------CCCHHHHHHHHHHHHHHHHhccCC
Confidence 469999999999999999999999999999999997 887 899999999999999999999999
Q ss_pred cCCcEEEEEEcC---CCeEEE
Q 030109 159 TGDKLEIVVLNK---GGIHRE 176 (183)
Q Consensus 159 ~g~~i~I~ii~k---~g~~~~ 176 (183)
++++++|++|++ +|++..
T Consensus 206 s~~~iev~vi~~~~~~g~~~~ 226 (244)
T 1ryp_G 206 KDFELEISWCSLSETNGLHKF 226 (244)
T ss_dssp SCEEEEEEEEETTTTTTSEEE
T ss_pred CCCeEEEEEEEecCCCCeeee
Confidence 999999999998 787643
No 37
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=1.9e-36 Score=249.97 Aligned_cols=161 Identities=17% Similarity=0.167 Sum_probs=148.4
Q ss_pred ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhh----cCCCceeeEEEEEEe
Q 030109 5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYK----RFFPYYSFNVLGGLD 80 (183)
Q Consensus 5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~----r~~P~~v~~lvaG~D 80 (183)
..+||++|++|++|+++|+.+|++.+++++|.+++.|+++++++++++.+|+++++++|.+ ++|||+|++||||||
T Consensus 63 ~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D 142 (288)
T 3nzj_F 63 KNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVD 142 (288)
T ss_dssp CSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEE
T ss_pred ccceEEEEcCCEEEEecCcHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEe
Confidence 4589999999999999999999999999999999999999999999999999999999653 368999999999999
Q ss_pred CCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcc---cCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcc
Q 030109 81 NEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQ---LKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDI 157 (183)
Q Consensus 81 ~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~---~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~ 157 (183)
++ +|+||++||+|++.+++++|+|+|++.++++||+. |++ +||++||++++++||..+.+||.
T Consensus 143 ~~-Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Lek~~~~~~~-------------~ms~eEAv~la~~al~~a~~~~~ 208 (288)
T 3nzj_F 143 KN-GAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPE-------------GLSAREAVKQAAKIIYLAHEDNK 208 (288)
T ss_dssp TT-EEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTT-------------CCCHHHHHHHHHHHHHHHGGGGT
T ss_pred CC-CCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHHhccccCC-------------CCCHHHHHHHHHHHHHHHHhccc
Confidence 85 59999999999999999999999999999999999 887 99999999999999999999998
Q ss_pred ccCCcEEEEEEcC--CCeEEEeee
Q 030109 158 YTGDKLEIVVLNK--GGIHREYME 179 (183)
Q Consensus 158 ~~g~~i~I~ii~k--~g~~~~~~~ 179 (183)
.++.+++|++|++ ++..++.+|
T Consensus 209 ~~~~~iev~vIt~~~~~~~~~~vp 232 (288)
T 3nzj_F 209 EKDFELEISWCSLSETNGLHKFVK 232 (288)
T ss_dssp TSEEEEEEEEEETTTSTTCCEECC
T ss_pred CCCCeEEEEEEEecCCCceEEECC
Confidence 8888999999999 444444443
No 38
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=1.1e-36 Score=248.50 Aligned_cols=156 Identities=13% Similarity=0.124 Sum_probs=146.0
Q ss_pred ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhh----cCCCceeeEEEEEEe
Q 030109 5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYK----RFFPYYSFNVLGGLD 80 (183)
Q Consensus 5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~----r~~P~~v~~lvaG~D 80 (183)
..+||++|++|++|+++|+.+|++.++++++.+++.|+++++++++++.+++++++++|.+ ..|||+|++||||||
T Consensus 59 ~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D 138 (263)
T 1iru_F 59 HQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD 138 (263)
T ss_dssp CCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEE
T ss_pred chhcEEEEcCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEc
Confidence 4689999999999999999999999999999999999999999999999999999999642 258999999999999
Q ss_pred CCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhc-ccc
Q 030109 81 NEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERD-IYT 159 (183)
Q Consensus 81 ~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd-~~~ 159 (183)
+ ++|+||++||+|++.+++++|+|+|++.++++||+.|++ .++||++||++++++||..+.+|| ..+
T Consensus 139 ~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~-----------~~~ms~eea~~la~~al~~~~~rd~~~s 206 (263)
T 1iru_F 139 D-MGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSE-----------FMECNLNELVKHGLRALRETLPAEQDLT 206 (263)
T ss_dssp T-TEEEEEEECSSSCEEEESEEEESTTHHHHHHHHHHHHHH-----------HTTCCHHHHHHHHHHHHHTTSCTTCCCC
T ss_pred C-CCCEEEEECCCCCEEEeeEEEcCcccHHHHHHHHHHhcc-----------cCCCCHHHHHHHHHHHHHHHHhccccCC
Confidence 7 459999999999999999999999999999999999984 138999999999999999999999 578
Q ss_pred CCcEEEEEEcCCC
Q 030109 160 GDKLEIVVLNKGG 172 (183)
Q Consensus 160 g~~i~I~ii~k~g 172 (183)
+++++|++|++++
T Consensus 207 g~~iev~vi~~~~ 219 (263)
T 1iru_F 207 TKNVSIGIVGKDL 219 (263)
T ss_dssp TTTEEEEEEETTE
T ss_pred CCcEEEEEEECCC
Confidence 9999999999994
No 39
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=2.1e-36 Score=242.71 Aligned_cols=155 Identities=15% Similarity=0.199 Sum_probs=144.1
Q ss_pred ccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh--h--cCCCceeeEEEEEEe
Q 030109 5 FYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYY--K--RFFPYYSFNVLGGLD 80 (183)
Q Consensus 5 ~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~--~--r~~P~~v~~lvaG~D 80 (183)
..+||++|++|++|+++|+.+|++.+.++++.+++.|+++++++++++.+|++++++++. + +.|||+|++||||||
T Consensus 58 ~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D 137 (233)
T 1ryp_F 58 YQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYD 137 (233)
T ss_dssp CCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEE
T ss_pred ccCcEEEEcCCEEEEEEechHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEe
Confidence 468999999999999999999999999999999999999999999999999999999943 2 267999999999999
Q ss_pred CCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCC--CHHHHHHHHHHHHHHHHhhc-c
Q 030109 81 NEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPL--SEAEAVDLVKTCFASATERD-I 157 (183)
Q Consensus 81 ~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~l--s~~eA~~l~~~al~~~~~rd-~ 157 (183)
++ +|+||++||+|++.+++++|+|+|++.++++||++|++ .++| |++||++++++||..+. || .
T Consensus 138 ~~-gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~-----------~~~m~~s~eea~~~a~~al~~~~-~d~~ 204 (233)
T 1ryp_F 138 KS-GAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDT-----------FIKIDGNPDELIKAGVEAISQSL-RDES 204 (233)
T ss_dssp TT-EEEEEEECTTSCEEEESEEEESTTHHHHHHHHHHHHHH-----------HTTCCSCHHHHHHHHHHHHTTSC-CSSC
T ss_pred CC-cCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHHhcc-----------ccccCCCHHHHHHHHHHHHHHHh-hccc
Confidence 74 59999999999999999999999999999999999985 1278 99999999999999999 87 5
Q ss_pred ccCCcEEEEEEcCCC
Q 030109 158 YTGDKLEIVVLNKGG 172 (183)
Q Consensus 158 ~~g~~i~I~ii~k~g 172 (183)
.++++++|++|++++
T Consensus 205 ~s~~~i~v~vi~~~~ 219 (233)
T 1ryp_F 205 LTVDNLSIAIVGKDT 219 (233)
T ss_dssp CCTTTEEEEEEETTE
T ss_pred CCCCcEEEEEEECCC
Confidence 789999999999994
No 40
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=2.6e-36 Score=244.34 Aligned_cols=154 Identities=15% Similarity=0.219 Sum_probs=144.4
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhh--c--CCCceeeEEEEEE
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYK--R--FFPYYSFNVLGGL 79 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~--r--~~P~~v~~lvaG~ 79 (183)
...+||++|++|++|+++|+.+|++.+.++++.+++.|+++++++++++.+|++++++++.+ + .|||+|++|||||
T Consensus 57 ~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~ 136 (248)
T 1iru_D 57 RTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGF 136 (248)
T ss_dssp GGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEE
T ss_pred CCCCcEEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEE
Confidence 34689999999999999999999999999999999999999999999999999999999553 2 5799999999999
Q ss_pred eCCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCC--CHHHHHHHHHHHHHHHHhhcc
Q 030109 80 DNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPL--SEAEAVDLVKTCFASATERDI 157 (183)
Q Consensus 80 D~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~l--s~~eA~~l~~~al~~~~~rd~ 157 (183)
|++++|+||++||+|++.+++++|+|+|++.++++||++|++ +| |++||++++++||..+.+
T Consensus 137 D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~-------------~m~~s~eea~~la~~al~~~~~--- 200 (248)
T 1iru_D 137 DFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTD-------------EAIETDDLTIKLVIKALLEVVQ--- 200 (248)
T ss_dssp CSSSCEEEEEECTTSCEEEBSEEEESTTHHHHHHHHTTTCCS-------------STTCSHHHHHHHHHHHHHTTSC---
T ss_pred eCCCCcEEEEEcCCCcEEEeeEEEECCCcHHHHHHHHHhhcc-------------cccCCHHHHHHHHHHHHHHHHc---
Confidence 966679999999999999999999999999999999999997 89 999999999999999887
Q ss_pred ccCCcEEEEEEcCCCe
Q 030109 158 YTGDKLEIVVLNKGGI 173 (183)
Q Consensus 158 ~~g~~i~I~ii~k~g~ 173 (183)
.++++++|++|+++|.
T Consensus 201 ~sg~~i~v~vi~~~g~ 216 (248)
T 1iru_D 201 SGGKNIELAVMRRDQS 216 (248)
T ss_dssp TTSTTCCEEEEESSSC
T ss_pred CCCCcEEEEEEECCCc
Confidence 4689999999999993
No 41
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=2.8e-36 Score=245.69 Aligned_cols=155 Identities=14% Similarity=0.158 Sum_probs=142.7
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHH---HhhhcCCCceeeEEEEEE
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHN-KQMSCPGMAQLLSNT---LYYKRFFPYYSFNVLGGL 79 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~-~~i~~~~la~~is~~---ly~~r~~P~~v~~lvaG~ 79 (183)
...+||++|++|++|+++|+.+|++.++++++.+++.|++.++ ++++++.+|++++++ .|+.++|||+|++|||||
T Consensus 48 ~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~ 127 (259)
T 1q5q_A 48 TALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEV 127 (259)
T ss_dssp SSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEEC
T ss_pred CCcCcEEEeCCCEEEEEccCHHHHHHHHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEE
Confidence 4678999999999999999999999999999999999999987 599999999999995 377778999999999999
Q ss_pred e--C-CCceEEEEEcCCCcee-eeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH--
Q 030109 80 D--N-EGKGCVYTYDAVGSYE-RVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASAT-- 153 (183)
Q Consensus 80 D--~-~g~p~Ly~iD~~G~~~-~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~-- 153 (183)
| + +++|+||++||+|++. .++++++|+|++.++++||++|++ +||++||++++++||..+.
T Consensus 128 D~~~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~-------------~ms~eea~~la~~al~~~~~~ 194 (259)
T 1q5q_A 128 GRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRA-------------DLDLEAAVGIAVNALRQGGAG 194 (259)
T ss_dssp CCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHHHHHHHHCCT-------------TCCHHHHHHHHHHHHTTCC--
T ss_pred cccCCCCCCEEEEECCCCceeeCCCEEEECCChHHHHHHHHhhccC-------------CCCHHHHHHHHHHHHHHHhhc
Confidence 9 3 5679999999999999 789999999999999999999997 9999999999999999999
Q ss_pred ---hhccccCCcEEEEEEcCCC
Q 030109 154 ---ERDIYTGDKLEIVVLNKGG 172 (183)
Q Consensus 154 ---~rd~~~g~~i~I~ii~k~g 172 (183)
+||. ++++++|++|+++|
T Consensus 195 ~~~~rd~-sg~~iev~vi~~~~ 215 (259)
T 1q5q_A 195 EGEKRNV-DVASLEVAVLDQSR 215 (259)
T ss_dssp ------C-CSSCSEEEEEETTS
T ss_pred ccccccC-CCCcEEEEEEECCC
Confidence 8998 89999999999995
No 42
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=7.2e-36 Score=247.14 Aligned_cols=159 Identities=19% Similarity=0.210 Sum_probs=148.9
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhc---CCCceeeEEEEEEe
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKR---FFPYYSFNVLGGLD 80 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r---~~P~~v~~lvaG~D 80 (183)
...+||++|+++++|+++|+.+|++.++++++.+++.|+++++++++++.++++|++++|.++ ++||+|++||||||
T Consensus 94 ~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~~isv~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D 173 (294)
T 1q5r_H 94 RDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYD 173 (294)
T ss_dssp SCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHHHHHHHhhhcCCcceEEEEEEEe
Confidence 356899999999999999999999999999999999999999999999999999999998754 58999999999999
Q ss_pred CCCc-----eEEEEEcCCCceeee--CeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 030109 81 NEGK-----GCVYTYDAVGSYERV--GYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASAT 153 (183)
Q Consensus 81 ~~g~-----p~Ly~iD~~G~~~~~--~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~ 153 (183)
++++ |+||++||+|+++++ +++|+|+|+++++++||+.|++ +|+++||++++++||..+.
T Consensus 174 ~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le~~y~~-------------~ms~eEAi~la~~aL~~a~ 240 (294)
T 1q5r_H 174 LDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSP-------------DSDEETALRAAIESLYDAA 240 (294)
T ss_dssp TTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHHHHCCS-------------SCCHHHHHHHHHHHHHHHH
T ss_pred CCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHHHhccC-------------CCCHHHHHHHHHHHHHHHH
Confidence 8756 999999999999999 8999999999999999999997 9999999999999999999
Q ss_pred hhccccCCc--E-----EEEEEcCCCeEE
Q 030109 154 ERDIYTGDK--L-----EIVVLNKGGIHR 175 (183)
Q Consensus 154 ~rd~~~g~~--i-----~I~ii~k~g~~~ 175 (183)
++|..+++. + +|++|+++|++.
T Consensus 241 ~rD~~sG~~~~ir~i~~ev~vI~~~g~~~ 269 (294)
T 1q5r_H 241 DDDSATGGPDLTRGIYPTAVTITQAGAVH 269 (294)
T ss_dssp HHCTTTCCCBTTTTBCCEEEEEETTEEEE
T ss_pred hhccccCCchhhcccCCEEEEEECCCEEE
Confidence 999887643 5 999999999764
No 43
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=6.1e-36 Score=242.38 Aligned_cols=155 Identities=16% Similarity=0.187 Sum_probs=144.6
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHhh----hcCCCceeeEEEEE
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLI-YQHQHNKQMSCPGMAQLLSNTLYY----KRFFPYYSFNVLGG 78 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~-~~~~~~~~i~~~~la~~is~~ly~----~r~~P~~v~~lvaG 78 (183)
...+||++|++|++|+++|..+|++.++++++.+++. |++.++.+++++.+++.++++++. +++|||++++||||
T Consensus 59 ~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG 138 (250)
T 1ryp_B 59 ETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAG 138 (250)
T ss_dssp GGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEE
T ss_pred cccCceEEECCCEEEEeeeCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEE
Confidence 4568999999999999999999999999999999999 999999999999999999988833 34689999999999
Q ss_pred EeCCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccc
Q 030109 79 LDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIY 158 (183)
Q Consensus 79 ~D~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~ 158 (183)
||++++|+||++||+|++.+++++|+|+|+++++++||+.|++ +||++||++++++||..+.+|+.
T Consensus 139 ~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~-------------~ms~eea~~la~~al~~~~~~~~- 204 (250)
T 1ryp_B 139 HDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWND-------------ELELEDAIHIALLTLKESVEGEF- 204 (250)
T ss_dssp EETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCT-------------TCCHHHHHHHHHHHHHHHCCSCC-
T ss_pred EcCCCCcEEEEECCCCCEEeeceeEecCccHHHHHHHHHHhcc-------------CCCHHHHHHHHHHHHHHHhcccc-
Confidence 9987779999999999999999999999999999999999997 99999999999999999999864
Q ss_pred cCCcEEEEEEcCCC
Q 030109 159 TGDKLEIVVLNKGG 172 (183)
Q Consensus 159 ~g~~i~I~ii~k~g 172 (183)
++++++|++|++++
T Consensus 205 sg~~i~v~vi~~~~ 218 (250)
T 1ryp_B 205 NGDTIELAIIGDEN 218 (250)
T ss_dssp STTTEEEEEECSCC
T ss_pred CCCCEEEEEEEccc
Confidence 79999999999974
No 44
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=1.4e-35 Score=239.81 Aligned_cols=155 Identities=14% Similarity=0.153 Sum_probs=145.0
Q ss_pred cccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--hhc--CCCceeeEEEEEE
Q 030109 4 FFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLY--YKR--FFPYYSFNVLGGL 79 (183)
Q Consensus 4 ~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly--~~r--~~P~~v~~lvaG~ 79 (183)
...+||++|++|++++++|..+|++.++++++.+++.|+++++++++++.+|++++++++ .++ .|||++++|||||
T Consensus 62 ~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~ 141 (246)
T 1j2p_A 62 DTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGV 141 (246)
T ss_dssp GGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEE
T ss_pred CccCcEEEECCCEEEEEeEccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEE
Confidence 456899999999999999999999999999999999999999999999999999999994 443 5799999999999
Q ss_pred eCCCceEEEEEcCCCceeeeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 030109 80 DNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYT 159 (183)
Q Consensus 80 D~~g~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~ 159 (183)
| ++|+||++||+|++.+++++|+|+|+++++++||+.|++ +||++||++++++||..+.+| ..+
T Consensus 142 D--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~-------------~ms~eea~~la~~al~~~~~~-~~s 205 (246)
T 1j2p_A 142 N--EVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRD-------------DLSFDDAMVLGLVAMGLSIES-ELV 205 (246)
T ss_dssp S--SSEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCT-------------TCCHHHHHHHHHHHHHHHHTS-CCC
T ss_pred C--CCCEEEEECCCceEEeeeEEEECCCcHHHHHHHHHHhcc-------------CCCHHHHHHHHHHHHHHHhhc-cCC
Confidence 9 469999999999999999999999999999999999997 999999999999999999998 778
Q ss_pred CCcEEEEEEc-CC-CeE
Q 030109 160 GDKLEIVVLN-KG-GIH 174 (183)
Q Consensus 160 g~~i~I~ii~-k~-g~~ 174 (183)
+++++|++|+ ++ |++
T Consensus 206 g~~i~v~vi~~~~~~~~ 222 (246)
T 1j2p_A 206 PENIEVGYVKVDDRTFK 222 (246)
T ss_dssp GGGEEEEEEETTTCCCE
T ss_pred CCcEEEEEEEcCCCceE
Confidence 9999999999 64 444
No 45
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=1.4e-35 Score=245.16 Aligned_cols=160 Identities=17% Similarity=0.228 Sum_probs=140.4
Q ss_pred CcccceeEEecCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhc---CCCceeeEEEEEE
Q 030109 3 SFFYILTSCRADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKR---FFPYYSFNVLGGL 79 (183)
Q Consensus 3 ~~~~~ki~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r---~~P~~v~~lvaG~ 79 (183)
+...+||++|++|++|+++|..+|++.++++++.+++.|++.++.+++++.+++++++++|.++ ++||+|++|||||
T Consensus 85 ~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~~~~rpf~v~~lvaG~ 164 (291)
T 2jay_A 85 GRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGY 164 (291)
T ss_dssp CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHHHHHHTCCCEEEEEEE
T ss_pred cCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhhhhccccceeEEEEEE
Confidence 3467899999999999999999999999999999999999999999999999999999998754 4799999999999
Q ss_pred eCCCc-----eEEEEEcCCCcee--eeCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 030109 80 DNEGK-----GCVYTYDAVGSYE--RVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASA 152 (183)
Q Consensus 80 D~~g~-----p~Ly~iD~~G~~~--~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~ 152 (183)
|++++ |+||++||+|++. +++++|+|+|+++++++||+.|++ +||++||++++++||..+
T Consensus 165 D~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~~-------------~ms~eEAi~la~~aL~~a 231 (291)
T 2jay_A 165 DIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQ-------------VTDGDSGLRVAVEALYDA 231 (291)
T ss_dssp CTTCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHHHHHHHGGG-------------CCSHHHHHHHHHHHHHHC
T ss_pred eCCCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHHHHHHhcCC-------------CCCHHHHHHHHHHHHHHH
Confidence 98766 9999999999999 789999999999999999999997 999999999999999999
Q ss_pred HhhccccCCc--E-----EEEEEcCCCeEE
Q 030109 153 TERDIYTGDK--L-----EIVVLNKGGIHR 175 (183)
Q Consensus 153 ~~rd~~~g~~--i-----~I~ii~k~g~~~ 175 (183)
.+||..+++. + +|++|+++|+++
T Consensus 232 ~~~D~~sg~~e~vr~~~~~v~vi~~dg~~~ 261 (291)
T 2jay_A 232 ADDDSATGGPDLVRGIFPTAVIIDADGAVD 261 (291)
T ss_dssp ----------------CCEEEEEETTEEEE
T ss_pred HhhCCCCCCcccccccCCEEEEEECCCeEE
Confidence 9999887753 1 699999998764
No 46
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=99.96 E-value=3.2e-29 Score=192.62 Aligned_cols=139 Identities=17% Similarity=0.078 Sum_probs=124.5
Q ss_pred cccceeEEe-cCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcC-CCceeeEEEEEEeC
Q 030109 4 FFYILTSCR-ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRF-FPYYSFNVLGGLDN 81 (183)
Q Consensus 4 ~~~~ki~~I-~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r~-~P~~v~~lvaG~D~ 81 (183)
...+||++| ++|++++++|..+|++.+.+++|.+++.|++ +....+..+++.++++|. ||+ +.+++|+|
T Consensus 29 ~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~r~~--~~~l~g~d- 99 (174)
T 1g3k_A 29 GNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKSAVELAKDWRTDRALRKL--EAMLIVAD- 99 (174)
T ss_dssp SCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHHHHHHHHHHHHSTTGGGC--CCEEEEEC-
T ss_pred CCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHHHHHHHHHHHhccCcCcc--eEEEEEEC-
Confidence 456899999 9999999999999999999999999999875 456677788888888763 454 57788887
Q ss_pred CCceEEEEEcCCCceeeeC---eEEEcCChhhhHHHHHcccC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcc
Q 030109 82 EGKGCVYTYDAVGSYERVG---YSSQGSGSTLIMPFLDNQLK-SPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDI 157 (183)
Q Consensus 82 ~g~p~Ly~iD~~G~~~~~~---~~a~G~gs~~~~~~Le~~~~-~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~ 157 (183)
+|+||++||+|++.+++ ++|+|+|+++++++||+.|+ + +||.+ +++++||..+.+||.
T Consensus 100 --~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~-------------~mt~~---~l~~~al~~a~~rd~ 161 (174)
T 1g3k_A 100 --EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENT-------------ELSAH---EIVEKSLRIAGDICV 161 (174)
T ss_dssp --SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHC-------------CCCHH---HHHHHHHHHHHHHCT
T ss_pred --CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccC-------------CCCHH---HHHHHHHHHHHHhcc
Confidence 49999999999999988 99999999999999999999 7 89954 799999999999999
Q ss_pred ccCCcEEEEEEc
Q 030109 158 YTGDKLEIVVLN 169 (183)
Q Consensus 158 ~~g~~i~I~ii~ 169 (183)
.++++++|.+|+
T Consensus 162 ~sg~~i~v~~i~ 173 (174)
T 1g3k_A 162 FTNTNFTIEELP 173 (174)
T ss_dssp TCCSCCEEEEEC
T ss_pred ccCCceEEEEec
Confidence 999999999985
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=99.96 E-value=3.8e-29 Score=191.69 Aligned_cols=138 Identities=17% Similarity=0.159 Sum_probs=122.6
Q ss_pred cccceeEEe-cCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhc-CCCceeeEEEEEEeC
Q 030109 4 FFYILTSCR-ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKR-FFPYYSFNVLGGLDN 81 (183)
Q Consensus 4 ~~~~ki~~I-~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r-~~P~~v~~lvaG~D~ 81 (183)
...+||++| ++|++++++|..+|++.+.+++|.+++.|+++ .++.++++ ++.+|++| .+||++++|++ |
T Consensus 29 ~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~~~l-~~~~~~~~~~~~~~~~~lv~--D- 99 (171)
T 1m4y_A 29 GNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAAVEL-AKDWRTDRVLRRLEALLLVA--D- 99 (171)
T ss_dssp SCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHHHHH-HHHHHHCTTGGGCCCEEEEE--C-
T ss_pred CCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHHHHH-HHHHHHhCCCCceEEEEEEE--c-
Confidence 356899999 99999999999999999999999999998754 36777776 44677766 45799999988 5
Q ss_pred CCceEEEEEcCCCceeeeC--eEEEcCChhhhHHHHHcccC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccc
Q 030109 82 EGKGCVYTYDAVGSYERVG--YSSQGSGSTLIMPFLDNQLK-SPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIY 158 (183)
Q Consensus 82 ~g~p~Ly~iD~~G~~~~~~--~~a~G~gs~~~~~~Le~~~~-~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~ 158 (183)
+|+||++||+|++.+++ +.|+|+|+++++++||+.|+ + +||. .+++++||..+.+||..
T Consensus 100 --~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~-------------~ms~---~~l~~~al~~a~~rd~~ 161 (171)
T 1m4y_A 100 --KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNT-------------DLSA---REIVEKAMTIAGEICIY 161 (171)
T ss_dssp --SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHC-------------CCCH---HHHHHHHHHHHHHHCTT
T ss_pred --CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccC-------------CCCH---HHHHHHHHHHHHHhCcc
Confidence 59999999999999987 99999999999999999999 7 8986 67899999999999999
Q ss_pred cCCcEEEEEE
Q 030109 159 TGDKLEIVVL 168 (183)
Q Consensus 159 ~g~~i~I~ii 168 (183)
++++++|.++
T Consensus 162 sg~~i~v~~~ 171 (171)
T 1m4y_A 162 TNQNIVIEEV 171 (171)
T ss_dssp CCSCCEEEEC
T ss_pred cCCeEEEEEC
Confidence 9999999864
No 48
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=99.96 E-value=5e-28 Score=187.07 Aligned_cols=141 Identities=16% Similarity=0.128 Sum_probs=120.9
Q ss_pred ccceeEEe-cCceEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhc-CCCceeeEEEEEEeCC
Q 030109 5 FYILTSCR-ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKR-FFPYYSFNVLGGLDNE 82 (183)
Q Consensus 5 ~~~ki~~I-~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~ly~~r-~~P~~v~~lvaG~D~~ 82 (183)
..+||++| ++|++++++|..+|++.+.++++.+++.|+ + ..++.++ .+++.+++.+ .|||++++||| |
T Consensus 36 ~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g--~~~~~~~-~l~~~~~~~~~~rp~~~~~lva--d-- 105 (180)
T 2z3b_A 36 TARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G--NLKRAAV-ELAKEWRSDKVLRKLEAMLIVM--N-- 105 (180)
T ss_dssp CCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T--CHHHHHH-HHHHHHHHCTTGGGCCCCEEEE--C--
T ss_pred CCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C--ChHHHHH-HHHHHHHhhhCcCcceEEEEEE--c--
Confidence 56899999 999999999999999999999999999987 3 3344444 4566665544 47999999999 4
Q ss_pred CceEEEEEcCCCceee--eCeEEEcCChhhhHHHHHcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccC
Q 030109 83 GKGCVYTYDAVGSYER--VGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTG 160 (183)
Q Consensus 83 g~p~Ly~iD~~G~~~~--~~~~a~G~gs~~~~~~Le~~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g 160 (183)
+|+||++||+|++.+ ++++|+|+|+++++++||+.|+++ .++||.+| ++++||..+.+||..+|
T Consensus 106 -~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~----------~~~mt~ee---l~~~al~~a~~rd~~sg 171 (180)
T 2z3b_A 106 -QDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHA----------GESMSASE---IARAALETAGEICVYTN 171 (180)
T ss_dssp -SSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHH----------GGGCCHHH---HHHHHHHHHHHHCTTCC
T ss_pred -CCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhcc----------CCCCCHHH---HHHHHHHHHHHhcCccC
Confidence 499999999999998 489999999999999999999840 01699999 46799999999999999
Q ss_pred CcEEEEEEc
Q 030109 161 DKLEIVVLN 169 (183)
Q Consensus 161 ~~i~I~ii~ 169 (183)
++++|.+|+
T Consensus 172 ~~i~v~~i~ 180 (180)
T 2z3b_A 172 DQIILEELE 180 (180)
T ss_dssp SCCEEEEEC
T ss_pred CeEEEEEEC
Confidence 999999983
No 49
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=73.58 E-value=9.4 Score=28.94 Aligned_cols=39 Identities=18% Similarity=0.310 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCeEEE
Q 030109 134 TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHRE 176 (183)
Q Consensus 134 ~~ls~~eA~~l~~~al~~~~~rd~~~g~~i~I~ii~k~g~~~~ 176 (183)
+.+++++|.+++..++..+.++ +..+.|.|++..|....
T Consensus 63 ~~ltl~~A~~l~~aA~~~A~~~----g~pV~IaVvD~~G~lla 101 (192)
T 3fpw_A 63 THLTLEAATKAARAAVEAAEKD----GRHVSVAVVDRNGNTLV 101 (192)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHT----TCCCEEEEEETTSCEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHhc----CCCEEEEEEeCCCCEEE
Confidence 4899999999999999999887 45899999999997543
No 50
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=67.31 E-value=9.2 Score=27.47 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCeEEE
Q 030109 134 TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHRE 176 (183)
Q Consensus 134 ~~ls~~eA~~l~~~al~~~~~rd~~~g~~i~I~ii~k~g~~~~ 176 (183)
+.+|.++|.+++..+...+.++ +..+.|.|++..|-...
T Consensus 10 ~~lt~~~A~~l~~aa~~~A~~~----g~~v~IaVvD~~G~ll~ 48 (145)
T 2a2l_A 10 QTITLAAAQQMAAAVEKKATEI----NVAVVFSVVDRGGNTLL 48 (145)
T ss_dssp EEECHHHHHHHHHHHHHHHHHT----TCCCEEEEEETTSCEEE
T ss_pred cCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEECCCCEEE
Confidence 4699999999999999998876 45899999999887543
No 51
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=36.64 E-value=42 Score=22.25 Aligned_cols=21 Identities=14% Similarity=0.330 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHHHHHHHhhcc
Q 030109 137 SEAEAVDLVKTCFASATERDI 157 (183)
Q Consensus 137 s~~eA~~l~~~al~~~~~rd~ 157 (183)
+..|.+++|++||..+.+-|.
T Consensus 42 D~~ESLEVAIqCI~~AF~Vd~ 62 (92)
T 4asv_A 42 DGADSLNVAMDCISEAFGFER 62 (92)
T ss_dssp HHHHHHHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHHHHHHHHhCCCc
Confidence 445669999999999987653
No 52
>2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B
Probab=34.16 E-value=52 Score=20.88 Aligned_cols=21 Identities=14% Similarity=0.330 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHHHHHHHhhcc
Q 030109 137 SEAEAVDLVKTCFASATERDI 157 (183)
Q Consensus 137 s~~eA~~l~~~al~~~~~rd~ 157 (183)
+..|.+++|++||..+.+-|.
T Consensus 30 D~~ESLeVAiqCI~~aF~v~~ 50 (74)
T 2lxb_A 30 DGADSLNVAMDCISEAFGFER 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHHHHHhCCCc
Confidence 445669999999999987653
No 53
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=31.05 E-value=69 Score=20.04 Aligned_cols=39 Identities=23% Similarity=0.210 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCe
Q 030109 135 PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGI 173 (183)
Q Consensus 135 ~ls~~eA~~l~~~al~~~~~rd~~~g~~i~I~ii~k~g~ 173 (183)
.|+.+||+..+.+.|..+..+-....+.-.|.||+=.|.
T Consensus 7 Gl~v~eA~~~l~~~l~~~~~~~~~~~g~~~v~II~GkG~ 45 (82)
T 3fau_A 7 GLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGN 45 (82)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC--
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 699999999998888877641111123446888887665
No 54
>1ojh_A NBLA; degradation protein, phycobilisome degradation, protein BIND; HET: MSE; 1.80A {Anabaena SP} SCOP: a.214.1.1
Probab=30.95 E-value=48 Score=20.50 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhhc
Q 030109 135 PLSEAEAVDLVKTCFASATERD 156 (183)
Q Consensus 135 ~ls~~eA~~l~~~al~~~~~rd 156 (183)
+||.++|.++.++.++...-||
T Consensus 24 ~ls~EQaqe~Lve~~rQmMike 45 (65)
T 1ojh_A 24 NMSHDQAKDFLVKLYEQMVVRE 45 (65)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999998877665
No 55
>2q8v_A NBLA protein; phycobilisome, nutrient starvation, disassembly, bleaching, protein binding; 2.50A {Thermosynechococcus vulcanus} PDB: 2qdo_A
Probab=30.94 E-value=49 Score=20.35 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=19.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhhc
Q 030109 135 PLSEAEAVDLVKTCFASATERD 156 (183)
Q Consensus 135 ~ls~~eA~~l~~~al~~~~~rd 156 (183)
+||.++|.++.+++++...-+|
T Consensus 29 ~ls~EQAqe~Lve~~rQmMike 50 (63)
T 2q8v_A 29 AMSLQEARELLLQASRLLMMKD 50 (63)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999998887665
No 56
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=27.84 E-value=51 Score=19.41 Aligned_cols=21 Identities=14% Similarity=0.395 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHHHHHHhhcc
Q 030109 137 SEAEAVDLVKTCFASATERDI 157 (183)
Q Consensus 137 s~~eA~~l~~~al~~~~~rd~ 157 (183)
+..|.+++|++||..+.+-|.
T Consensus 25 D~~ESleVAiqCi~~aF~v~~ 45 (52)
T 4gof_A 25 DAQESLEVAIQCLETAFGVTV 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHTCCS
T ss_pred hHHHHHHHHHHHHHHHcCCCc
Confidence 445669999999999988654
No 57
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=27.83 E-value=92 Score=20.09 Aligned_cols=39 Identities=23% Similarity=0.210 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCe
Q 030109 135 PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGI 173 (183)
Q Consensus 135 ~ls~~eA~~l~~~al~~~~~rd~~~g~~i~I~ii~k~g~ 173 (183)
.|+.+||+..+.+.|..+...-....+.-.|.||+=.|.
T Consensus 15 Gl~v~eA~~~L~~~L~~~~~~~~~~~g~~~v~IIhGkG~ 53 (96)
T 2d9i_A 15 GLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGN 53 (96)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECCCSG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEECcCC
Confidence 689999999999888877531101123446888876664
No 58
>1p4k_A N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase; alpha beta, beta alpha, sandwich, hydrolase; 1.90A {Elizabethkingia meningoseptica} SCOP: d.153.1.5 PDB: 1p4v_A 9gaa_A 9gaf_A 9gac_A 3ljq_A 2gl9_A* 1ayy_A 2gaw_A 2gac_A* 2gaw_B 1ayy_B 2gl9_B* 2gac_B*
Probab=27.00 E-value=1.8e+02 Score=23.27 Aligned_cols=68 Identities=15% Similarity=0.187 Sum_probs=40.6
Q ss_pred CCceeee---CeEEEcCChhhhHHHHHc----ccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh-hc-cccCCcE
Q 030109 93 VGSYERV---GYSSQGSGSTLIMPFLDN----QLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATE-RD-IYTGDKL 163 (183)
Q Consensus 93 ~G~~~~~---~~~a~G~gs~~~~~~Le~----~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~-rd-~~~g~~i 163 (183)
.|+|... -.+++|.|..++...+-. ..+. .++++||.+-+++-+..... ++ ...+...
T Consensus 189 aG~yAd~~~gavs~TG~GE~iir~~~A~~i~~~m~~-------------G~s~~~A~~~ai~~~~~~~~~~~~~~~~~~g 255 (295)
T 1p4k_A 189 AGLFVDNEIGAATATGHGEEVIRTVGTHLVVELMNQ-------------GRTPQQACKEAVERIVKIVNRRGKNLKDIQV 255 (295)
T ss_dssp TTEEEETTTEEEEEEECHHHHHHHTHHHHHHHHHHT-------------TCCHHHHHHHHHHHHHHHHHHTTCCGGGCCE
T ss_pred ceeeecCCcEEEEeecccHHHHhhhHHHHHHHHHHc-------------CCCHHHHHHHHHHHHHHHhhccccccCCceE
Confidence 4556543 377899999877665543 2333 78999998887765554432 11 1112234
Q ss_pred EEEEEcCCCe
Q 030109 164 EIVVLNKGGI 173 (183)
Q Consensus 164 ~I~ii~k~g~ 173 (183)
=+..|+++|-
T Consensus 256 G~Iavd~~G~ 265 (295)
T 1p4k_A 256 GFIALNKKGE 265 (295)
T ss_dssp EEEEEETTSC
T ss_pred EEEEEcCCCC
Confidence 4555788874
No 59
>1apy_B Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET: NAG BMA; 2.00A {Homo sapiens} SCOP: d.153.1.5 PDB: 1apz_B*
Probab=26.77 E-value=1.7e+02 Score=20.80 Aligned_cols=63 Identities=14% Similarity=0.161 Sum_probs=36.4
Q ss_pred CCceeee---CeEEEcCChhhhHHHHHc----ccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCcEEE
Q 030109 93 VGSYERV---GYSSQGSGSTLIMPFLDN----QLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEI 165 (183)
Q Consensus 93 ~G~~~~~---~~~a~G~gs~~~~~~Le~----~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~i~I 165 (183)
.|.+... -.+++|.|...+...+-. ..+. .++++||.+-+++-+.. + ......-|
T Consensus 38 aG~yAd~~~ga~s~TG~GE~iiR~~~A~~iv~~m~~-------------G~~~~~A~~~~i~~~~~---~--~~~~~ggv 99 (141)
T 1apy_B 38 AGAYADDTAGAAAATGNGDILMRFLPSYQAVEYMRR-------------GEDPTIACQKVISRIQK---H--FPEFFGAV 99 (141)
T ss_dssp TTEEEETTTEEEEEEECHHHHGGGCHHHHHHHHHHT-------------TCCHHHHHHHHHHHHHH---H--CTTCCEEE
T ss_pred eeEEEcCCcEEEEeecChHHHHHHhHHHHHHHHHHc-------------CCCHHHHHHHHHHHHHH---h--cCCCcEEE
Confidence 4455543 367899998765544432 2333 78999998776644332 2 11123356
Q ss_pred EEEcCCCe
Q 030109 166 VVLNKGGI 173 (183)
Q Consensus 166 ~ii~k~g~ 173 (183)
..++++|.
T Consensus 100 Ia~d~~G~ 107 (141)
T 1apy_B 100 ICANVTGS 107 (141)
T ss_dssp EEEETTSC
T ss_pred EEEeCCCC
Confidence 66788774
No 60
>3ub6_A Chemoreceptor TLPB; homodimer, four-helix bundle, PAS domain, membrane protein; 1.38A {Helicobacter pylori} PDB: 3ub7_A 3ub8_A 3ub9_A*
Probab=26.12 E-value=1.1e+02 Score=22.15 Aligned_cols=37 Identities=16% Similarity=0.315 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCeEE
Q 030109 135 PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGIHR 175 (183)
Q Consensus 135 ~ls~~eA~~l~~~al~~~~~rd~~~g~~i~I~ii~k~g~~~ 175 (183)
.++.+||.+.+++.|+....-+ ++--+.+++.+|...
T Consensus 46 ~~~~~ea~~~a~~~l~~~r~g~----~~gY~fv~d~~g~~l 82 (181)
T 3ub6_A 46 SFDNDTARKMALDYFKRINDDK----GMIYMVVVDKNGVVL 82 (181)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTC----SSCEEEEECTTCBEE
T ss_pred hCCHHHHHHHHHHHHHhCccCC----CCCEEEEEeCCCCEE
Confidence 4889999999999988776531 123677889998753
No 61
>2gdt_A Leader protein; P65 homolog; NSP1 (EC 3.4.22.-); beta-barrel, alpha-beta, replicase, structural genomics, PSI-2, protein structure initiative; NMR {Sars coronavirus} SCOP: d.346.1.1 PDB: 2hsx_A
Probab=25.99 E-value=62 Score=22.02 Aligned_cols=20 Identities=20% Similarity=0.084 Sum_probs=17.5
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 030109 134 TPLSEAEAVDLVKTCFASAT 153 (183)
Q Consensus 134 ~~ls~~eA~~l~~~al~~~~ 153 (183)
.+++.+||++.|++.|++..
T Consensus 20 w~~~~EeALe~ar~~L~~g~ 39 (116)
T 2gdt_A 20 FGDSVEEALSEAREHLKNGT 39 (116)
T ss_dssp SCSSHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHhhcCC
Confidence 47999999999999998753
No 62
>1sau_A Sulfite reductase, desulfoviridin-type subunit GA; orthogonal helical bundle, oxidoreductase; 1.12A {Archaeoglobus fulgidus} PDB: 2a5w_A
Probab=24.03 E-value=1e+02 Score=21.18 Aligned_cols=34 Identities=6% Similarity=0.020 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 030109 23 FQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSN 60 (183)
Q Consensus 23 ~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~ 60 (183)
+..|--.+++++|. |..+++..++++.|++.+..
T Consensus 46 LTe~HW~VI~flR~----~Y~e~~~~P~iR~l~K~~~~ 79 (115)
T 1sau_A 46 LTEEHWKIIRYLRD----YFIKYGVAPPVRMLVKHCKK 79 (115)
T ss_dssp CCHHHHHHHHHHHH----HHHHHSSCCCHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHH----HHHHHCCCCcHHHHHHHHHH
Confidence 34455556666555 45567888999999998843
No 63
>3cs5_A Phycobilisome degradation protein NBLA; photosynthesis, nutrient stress, bleaching, helix-turn-helix, partial merohedral twinning; 2.20A {Synechococcus SP}
Probab=23.77 E-value=17 Score=22.10 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=19.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhc
Q 030109 134 TPLSEAEAVDLVKTCFASATERD 156 (183)
Q Consensus 134 ~~ls~~eA~~l~~~al~~~~~rd 156 (183)
.+||.++|.++.++.++...-||
T Consensus 26 ~~ls~EQaqe~Lve~~rQmmike 48 (59)
T 3cs5_A 26 RDISREDLEDLFIEVVRQKMAHE 48 (59)
T ss_dssp SSSCTGGGTHHHHTHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999998877665
No 64
>1yx3_A Hypothetical protein DSRC; structural genomics, dissimilatory sulfite reductase, gamma subunit, DSVC, PSI, protein structure initiative; NMR {Allochromatium vinosum}
Probab=21.93 E-value=1.3e+02 Score=21.17 Aligned_cols=34 Identities=9% Similarity=0.110 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 030109 25 ADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTL 62 (183)
Q Consensus 25 aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~is~~l 62 (183)
.|=-.+++++| .|..+++..++++.|++.+...+
T Consensus 64 e~HWeVI~flR----~fY~e~~~sP~iR~L~K~~~~~~ 97 (132)
T 1yx3_A 64 EEHWDIINFLR----EYYEEYQIAPAVRVLTKAVGKKL 97 (132)
T ss_dssp HHHHHHHHHHH----HHHHHHCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHCCCChHHHHHHHHHHHh
Confidence 34444555554 45566788899999999885544
No 65
>4gdv_A L-asparaginase; NTN enzyme, homodimer, hydrolase, L-asparagine; 1.75A {Homo sapiens} PDB: 4gdu_A 4gdt_A 4gdw_A
Probab=21.46 E-value=2.5e+02 Score=22.64 Aligned_cols=62 Identities=23% Similarity=0.302 Sum_probs=38.8
Q ss_pred CCceeeeC---eEEEcCChhhhHHHHHc----ccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCcEEE
Q 030109 93 VGSYERVG---YSSQGSGSTLIMPFLDN----QLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEI 165 (183)
Q Consensus 93 ~G~~~~~~---~~a~G~gs~~~~~~Le~----~~~~~~~~~~~~~~~~~~ls~~eA~~l~~~al~~~~~rd~~~g~~i~I 165 (183)
.|++.... .+++|.|..++...+-. ..+. .++++||.+.+++-+..-. ++..=+
T Consensus 207 aG~yAdn~~gavs~TG~GE~iir~~~A~~i~~~m~~-------------G~s~~eA~~~~i~~~~~~~------~g~gG~ 267 (310)
T 4gdv_A 207 AGGYADNDIGAVSTTGHGESILKVNLARLTLFHIEQ-------------GKTVEEAADLSLGYMKSRV------KGLGGL 267 (310)
T ss_dssp TTEEEETTTEEEEEEECHHHHHHHTHHHHHHHHHHT-------------TCCHHHHHHHHHHHHHHHH------CCCEEE
T ss_pred ceeEecCCcEEEEeecCcHHHHHHHHHHHHHHHHHC-------------CCCHHHHHHHHHHHHHHhc------CCcEEE
Confidence 56666543 56899999888765543 2333 7899999887665543322 123345
Q ss_pred EEEcCCCe
Q 030109 166 VVLNKGGI 173 (183)
Q Consensus 166 ~ii~k~g~ 173 (183)
..|+++|-
T Consensus 268 Iavd~~G~ 275 (310)
T 4gdv_A 268 IVVSKTGD 275 (310)
T ss_dssp EEEETTSC
T ss_pred EEEeCCCC
Confidence 56777773
No 66
>2kwp_A Transcription elongation protein NUSA; NMR {Escherichia coli}
Probab=20.25 E-value=2.1e+02 Score=19.80 Aligned_cols=39 Identities=15% Similarity=0.253 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEcCCCe
Q 030109 135 PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKGGI 173 (183)
Q Consensus 135 ~ls~~eA~~l~~~al~~~~~rd~~~g~~i~I~ii~k~g~ 173 (183)
+++.+..++.+..||..+..+...+..+++|.+=.+.|-
T Consensus 17 gI~~e~v~eaie~AL~~A~kk~~g~~~~~~V~id~~tG~ 55 (129)
T 2kwp_A 17 ALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGD 55 (129)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEETTTTE
T ss_pred CcCHHHHHHHHHHHHHHHHHHhcCCccceEEEEECCCCe
Confidence 899999999999999999988766667788776666664
No 67
>1b66_A 6-pyruvoyl tetrahydropterin synthase; tetrahydrobiopterin biosynthesis, phosphate elimination, PTE synthesis; HET: BIO; 1.90A {Rattus rattus} SCOP: d.96.1.2 PDB: 1b6z_A 1gtq_A 3i2b_A
Probab=20.02 E-value=78 Score=22.26 Aligned_cols=44 Identities=11% Similarity=0.153 Sum_probs=30.9
Q ss_pred cCCHHHHHHHHHHHHHHH---HHHHHhc-------CCCCCHHHHHHHHHHHHhh
Q 030109 21 SGFQADVKALQKLLAARH---LIYQHQH-------NKQMSCPGMAQLLSNTLYY 64 (183)
Q Consensus 21 sG~~aD~~~l~~~~r~~~---~~~~~~~-------~~~i~~~~la~~is~~ly~ 64 (183)
.|..-|+..+.+.++..+ .+|++.+ ...+|.+.+|.+|-+.+..
T Consensus 62 ~GmV~Df~~lK~~i~~~i~~~lDH~~Ln~dvp~f~~~~pTaEnlA~~i~~~l~~ 115 (140)
T 1b66_A 62 TGMVMNLTDLKEYMEEAIMKPLDHKNLDLDVPYFADVVSTTENVAVYIWENLQR 115 (140)
T ss_dssp TCCSSCHHHHHHHHHHHTHHHHTTEEHHHHCGGGTSSCCCHHHHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHhhcCCCCcccccCcccCCCCCCHHHHHHHHHHHHHH
Confidence 567778888887777622 2333333 3478999999999998865
Done!