BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030110
(183 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P82024|RR21_SPIOL 30S ribosomal protein S21, chloroplastic (Fragment) OS=Spinacia
oleracea GN=rps21 PE=1 SV=1
Length = 35
Score = 60.5 bits (145), Expect = 5e-09, Method: Composition-based stats.
Identities = 31/35 (88%), Positives = 34/35 (97%)
Query: 84 FKSAYNVQVVVDENEPEERLLNRFRREVMRAGVIQ 118
F+SAYNVQV+VD+NE EERLLNRFRREVMRAGVIQ
Sbjct: 1 FRSAYNVQVLVDDNENEERLLNRFRREVMRAGVIQ 35
>sp|P48949|RS21_SYNY3 30S ribosomal protein S21 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=rpsU PE=3 SV=1
Length = 60
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 91 QVVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRK 136
QVVV +NEP E L RF+R+V +AG+ + K+ +FFET Q++ KRK
Sbjct: 3 QVVVGQNEPIESALRRFKRQVAKAGIYTDFKKHQFFETPQEKHKRK 48
>sp|B0CE36|RS21_ACAM1 30S ribosomal protein S21 OS=Acaryochloris marina (strain MBIC
11017) GN=rpsU PE=3 SV=1
Length = 59
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/59 (52%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
Query: 90 VQVVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRRR 148
VQVV+ E+E E L RF+R+V +AG++ + KRRR FET ++KKRK R A +R RR R
Sbjct: 2 VQVVLGEDEGIESALRRFKRQVSKAGILADVKRRRHFETPLEKKKRK-RIATRRKRRFR 59
>sp|P0A4B7|RS21A_NOSS1 30S ribosomal protein S21 A OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=rpsU1 PE=3 SV=1
Length = 62
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%)
Query: 91 QVVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRR 147
Q+VV ENE E L RF+REV +AG+ Q+ ++ R FET ++ KRK K+++RR
Sbjct: 3 QIVVGENEHIESALRRFKREVSKAGIFQDMRKHRHFETPIEKSKRKKLALHKQSKRR 59
>sp|P0A4B8|RS21A_ANAVA 30S ribosomal protein S21 A OS=Anabaena variabilis GN=rpsU1 PE=1
SV=3
Length = 62
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%)
Query: 91 QVVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRR 147
Q+VV ENE E L RF+REV +AG+ Q+ ++ R FET ++ KRK K+++RR
Sbjct: 3 QIVVGENEHIESALRRFKREVSKAGIFQDMRKHRHFETPIEKSKRKKLALHKQSKRR 59
>sp|Q3M446|RS213_ANAVT 30S ribosomal protein S21 3 OS=Anabaena variabilis (strain ATCC
29413 / PCC 7937) GN=rpsU3 PE=3 SV=1
Length = 62
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%)
Query: 91 QVVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRR 147
Q+VV ENE E L RF+REV +AG+ Q+ ++ R FET ++ KRK K+++RR
Sbjct: 3 QIVVGENEHIESALRRFKREVSKAGIFQDMRKHRHFETPIEKSKRKKLALHKQSKRR 59
>sp|B2UNE2|RS21_AKKM8 30S ribosomal protein S21 OS=Akkermansia muciniphila (strain ATCC
BAA-835) GN=rpsU PE=3 SV=1
Length = 83
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 37/55 (67%)
Query: 91 QVVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNR 145
+V V + EP +R L R + ++ G++ E +RRR FET DE++RK R A+KRN+
Sbjct: 3 EVTVRKGEPIDRALKRLKTKLDVEGILDEMRRRRAFETPMDERRRKARSASKRNK 57
>sp|Q602S0|RS21_METCA 30S ribosomal protein S21 OS=Methylococcus capsulatus (strain ATCC
33009 / NCIMB 11132 / Bath) GN=rpsU PE=3 SV=1
Length = 77
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%)
Query: 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRRRSQF 151
+ + ENEP E + RF+R +AGV+ E +RR ++E +E+KRK A KR+ ++ S+
Sbjct: 4 IKIRENEPFEIAIRRFKRACEKAGVLSEVRRREYYEKPTEERKRKAAAAIKRHLKKLSRE 63
Query: 152 RGPVQNRQEATP 163
R +QN ++ P
Sbjct: 64 RFALQNLRKGRP 75
>sp|Q2JM43|RS21_SYNJB 30S ribosomal protein S21 OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=rpsU PE=3 SV=1
Length = 61
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 91 QVVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRR 147
QV + ENE E L RF+R+V +AG++++ + R FET +++KRK A +RNRR+
Sbjct: 3 QVTIGENEGIESALRRFKRQVSKAGILRDLRNHRHFETNLEKRKRKA-VAVRRNRRK 58
>sp|Q2JXR2|RS21_SYNJA 30S ribosomal protein S21 OS=Synechococcus sp. (strain JA-3-3Ab)
GN=rpsU PE=3 SV=1
Length = 61
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 91 QVVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRR 147
QV + ENE E L RF+R+V +AG++++ + R FET +++KRK A +RNRR+
Sbjct: 3 QVTIGENEGIESALRRFKRQVSKAGILRDLRNHRHFETNLEKRKRKA-VAMRRNRRK 58
>sp|A1KAI5|RS21_AZOSB 30S ribosomal protein S21 OS=Azoarcus sp. (strain BH72) GN=rpsU
PE=3 SV=1
Length = 70
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRR-RSQ 150
+ V ENEP E + RF+R + + GV+ E + R F+E E+KRK A KRN +R RSQ
Sbjct: 4 IRVKENEPFEVAIRRFKRTIEKTGVLTELRSREFYEKPTAERKRKLAAAVKRNHKRLRSQ 63
Query: 151 FRGP 154
P
Sbjct: 64 MLPP 67
>sp|Q10VZ7|RS21_TRIEI 30S ribosomal protein S21 OS=Trichodesmium erythraeum (strain
IMS101) GN=rpsU PE=3 SV=1
Length = 62
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 91 QVVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRRRSQ 150
QV++ ENE E L RF+R+V +AG+ + K+ R FET +++KRK A ++ R+RRS+
Sbjct: 3 QVILGENEGIESALRRFKRQVSQAGIFPDMKKHRHFETPIEKRKRKA-MALQKQRKRRSR 61
Query: 151 F 151
+
Sbjct: 62 Y 62
>sp|B1XPL6|RS21_SYNP2 30S ribosomal protein S21 OS=Synechococcus sp. (strain ATCC 27264 /
PCC 7002 / PR-6) GN=rpsU PE=3 SV=1
Length = 58
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 91 QVVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRR 146
QVVV +NE E L RF+R+V +AG+ + KRRR FET +++KRK A+R +R
Sbjct: 3 QVVVGQNENIESALRRFKRQVSKAGIFADIKRRRHFETPIEKRKRKA--VARRKKR 56
>sp|Q5P262|RS21_AROAE 30S ribosomal protein S21 OS=Aromatoleum aromaticum (strain EbN1)
GN=rpsU PE=3 SV=1
Length = 70
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRR-RSQ 150
+ V ENEP E + RF+R + + G++ E + R F+E E+KRK+ A KRN +R RSQ
Sbjct: 4 IRVKENEPFEVAIRRFKRTIEKTGLLTELRAREFYEKPTAERKRKSAAAVKRNHKRLRSQ 63
>sp|Q87B16|RS21_XYLFT 30S ribosomal protein S21 OS=Xylella fastidiosa (strain Temecula1 /
ATCC 700964) GN=rpsU PE=3 SV=1
Length = 71
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 37/59 (62%)
Query: 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRRRSQ 150
V V ENEP E L RF+R +AG++ E ++R F+E E+KRK A KRN RR S+
Sbjct: 4 VKVRENEPFEFALRRFKRICEKAGILAETRKREFYEKPTQERKRKAAAAVKRNIRRTSR 62
>sp|B2I7X5|RS21_XYLF2 30S ribosomal protein S21 OS=Xylella fastidiosa (strain M23)
GN=rpsU PE=3 SV=1
Length = 71
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 37/59 (62%)
Query: 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRRRSQ 150
V V ENEP E L RF+R +AG++ E ++R F+E E+KRK A KRN RR S+
Sbjct: 4 VKVRENEPFEFALRRFKRICEKAGILAETRKREFYEKPTQERKRKAAAAVKRNIRRTSR 62
>sp|Q8Y3H2|RS21_RALSO 30S ribosomal protein S21 OS=Ralstonia solanacearum (strain
GMI1000) GN=rpsU PE=3 SV=1
Length = 70
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRR-RSQ 150
+ + ENEP E L RFRRE+ R G+I+E + R +E E+KRK A R R+R RSQ
Sbjct: 4 IRLKENEPVEVALRRFRREIERTGLIKELRARTAYEKPTTERKRKKAAAVSRTRKRLRSQ 63
Query: 151 F 151
Sbjct: 64 M 64
>sp|B2U814|RS21_RALPJ 30S ribosomal protein S21 OS=Ralstonia pickettii (strain 12J)
GN=rpsU PE=3 SV=1
Length = 70
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRR-RSQ 150
+ + ENEP E L RFRRE+ R G+I+E + R +E E+KRK A R R+R RSQ
Sbjct: 4 IRLKENEPVEVALRRFRREIERTGLIKELRARTAYEKPTTERKRKKAAAVSRTRKRLRSQ 63
Query: 151 F 151
Sbjct: 64 M 64
>sp|Q3M4P1|RS212_ANAVT 30S ribosomal protein S21 2 OS=Anabaena variabilis (strain ATCC
29413 / PCC 7937) GN=rpsU2 PE=3 SV=1
Length = 58
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 91 QVVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRR 146
QVV+ ENE + L RF+R+V +AG++ + K R FET + +KRK AA+R RR
Sbjct: 3 QVVLGENEGIDSALRRFKRQVSKAGILADVKYHRHFETPLERRKRKA-VAARRKRR 57
>sp|Q05I90|RS21_XANOR 30S ribosomal protein S21 OS=Xanthomonas oryzae pv. oryzae (strain
KACC10331 / KXO85) GN=rpsU PE=3 SV=1
Length = 71
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 36/59 (61%)
Query: 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRRRSQ 150
V V ENEP E L RF+R +AGV+ E ++R F+E E+KRK A KR RR S+
Sbjct: 4 VKVRENEPFEFALRRFKRTCEKAGVLAETRKREFYEKPTQERKRKAAAAVKRQLRRSSR 62
>sp|B2SLA2|RS21_XANOP 30S ribosomal protein S21 OS=Xanthomonas oryzae pv. oryzae (strain
PXO99A) GN=rpsU PE=3 SV=1
Length = 71
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 36/59 (61%)
Query: 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRRRSQ 150
V V ENEP E L RF+R +AGV+ E ++R F+E E+KRK A KR RR S+
Sbjct: 4 VKVRENEPFEFALRRFKRTCEKAGVLAETRKREFYEKPTQERKRKAAAAVKRQLRRSSR 62
>sp|Q2NYH0|RS21_XANOM 30S ribosomal protein S21 OS=Xanthomonas oryzae pv. oryzae (strain
MAFF 311018) GN=rpsU PE=3 SV=1
Length = 71
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 36/59 (61%)
Query: 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRRRSQ 150
V V ENEP E L RF+R +AGV+ E ++R F+E E+KRK A KR RR S+
Sbjct: 4 VKVRENEPFEFALRRFKRTCEKAGVLAETRKREFYEKPTQERKRKAAAAVKRQLRRSSR 62
>sp|P66536|RS21_XANCP 30S ribosomal protein S21 OS=Xanthomonas campestris pv. campestris
(strain ATCC 33913 / NCPPB 528 / LMG 568) GN=rpsU PE=3
SV=1
Length = 71
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 36/59 (61%)
Query: 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRRRSQ 150
V V ENEP E L RF+R +AGV+ E ++R F+E E+KRK A KR RR S+
Sbjct: 4 VKVRENEPFEFALRRFKRTCEKAGVLAETRKREFYEKPTQERKRKAAAAVKRQLRRSSR 62
>sp|B0RXI3|RS21_XANCB 30S ribosomal protein S21 OS=Xanthomonas campestris pv. campestris
(strain B100) GN=rpsU PE=3 SV=1
Length = 71
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 36/59 (61%)
Query: 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRRRSQ 150
V V ENEP E L RF+R +AGV+ E ++R F+E E+KRK A KR RR S+
Sbjct: 4 VKVRENEPFEFALRRFKRTCEKAGVLAETRKREFYEKPTQERKRKAAAAVKRQLRRSSR 62
>sp|Q4UPU4|RS21_XANC8 30S ribosomal protein S21 OS=Xanthomonas campestris pv. campestris
(strain 8004) GN=rpsU PE=3 SV=1
Length = 71
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 36/59 (61%)
Query: 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRRRSQ 150
V V ENEP E L RF+R +AGV+ E ++R F+E E+KRK A KR RR S+
Sbjct: 4 VKVRENEPFEFALRRFKRTCEKAGVLAETRKREFYEKPTQERKRKAAAAVKRQLRRSSR 62
>sp|Q3BNE1|RS21_XANC5 30S ribosomal protein S21 OS=Xanthomonas campestris pv. vesicatoria
(strain 85-10) GN=rpsU PE=3 SV=1
Length = 71
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 36/59 (61%)
Query: 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRRRSQ 150
V V ENEP E L RF+R +AGV+ E ++R F+E E+KRK A KR RR S+
Sbjct: 4 VKVRENEPFEFALRRFKRTCEKAGVLAETRKREFYEKPTQERKRKAAAAVKRQLRRSSR 62
>sp|P66535|RS21_XANAC 30S ribosomal protein S21 OS=Xanthomonas axonopodis pv. citri
(strain 306) GN=rpsU PE=3 SV=1
Length = 71
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 36/59 (61%)
Query: 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRRRSQ 150
V V ENEP E L RF+R +AGV+ E ++R F+E E+KRK A KR RR S+
Sbjct: 4 VKVRENEPFEFALRRFKRTCEKAGVLAETRKREFYEKPTQERKRKAAAAVKRQLRRSSR 62
>sp|B2FK05|RS21_STRMK 30S ribosomal protein S21 OS=Stenotrophomonas maltophilia (strain
K279a) GN=rpsU PE=3 SV=1
Length = 71
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 36/59 (61%)
Query: 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRRRSQ 150
V V ENEP E L RF+R +AGV+ E ++R F+E E+KRK A KR RR S+
Sbjct: 4 VKVRENEPFEFALRRFKRTCEKAGVLAETRKREFYEKPTQERKRKAAAAVKRQLRRSSR 62
>sp|B4SHI8|RS21_STRM5 30S ribosomal protein S21 OS=Stenotrophomonas maltophilia (strain
R551-3) GN=rpsU PE=3 SV=1
Length = 71
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 36/59 (61%)
Query: 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRRRSQ 150
V V ENEP E L RF+R +AGV+ E ++R F+E E+KRK A KR RR S+
Sbjct: 4 VKVRENEPFEFALRRFKRTCEKAGVLAETRKREFYEKPTQERKRKAAAAVKRQLRRSSR 62
>sp|Q7NRL5|RS21_CHRVO 30S ribosomal protein S21 OS=Chromobacterium violaceum (strain ATCC
12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 /
NCTC 9757) GN=rpsU PE=3 SV=1
Length = 70
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRR-RSQ 150
+ V ENEP E L RF+R V + G++ E + R F+E E+KRK A KR+ +R RSQ
Sbjct: 4 IRVKENEPFEVALRRFKRAVEKTGLLTELRAREFYEKPTTERKRKHAAAVKRHYKRIRSQ 63
Query: 151 FRGP 154
P
Sbjct: 64 MLPP 67
>sp|C1DC39|RS21_LARHH 30S ribosomal protein S21 OS=Laribacter hongkongensis (strain
HLHK9) GN=rpsU PE=3 SV=1
Length = 70
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRR-RSQ 150
V V ENEP E + RF+R + + G++ E + R F+E E+KRK A KR+ +R RSQ
Sbjct: 4 VRVKENEPFEVAMRRFKRSIEKTGLLTELRAREFYEKPTTERKRKKAAAVKRHYKRLRSQ 63
Query: 151 FRGP 154
P
Sbjct: 64 MLPP 67
>sp|Q7VCZ9|RS21_PROMA 30S ribosomal protein S21 OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=rpsU PE=3 SV=1
Length = 59
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 35/57 (61%)
Query: 91 QVVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRR 147
QV+V ENE E L RF+REV +AG+ + KR R ET ++ KRK R + RRR
Sbjct: 3 QVIVGENEGVESALRRFKREVSKAGIFNDLKRIRHHETPVEKYKRKQRLKNRTKRRR 59
>sp|Q2Y7B7|RS21_NITMU 30S ribosomal protein S21 OS=Nitrosospira multiformis (strain ATCC
25196 / NCIMB 11849) GN=rpsU PE=3 SV=1
Length = 70
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRR-RSQ 150
+ V ENEP E + RF+R + + G++ E + R F+E E+KRK A KR +R RSQ
Sbjct: 4 IKVKENEPFEVAMRRFKRTIEKTGLLTELRAREFYEKPTAERKRKLAAAVKRTYKRLRSQ 63
Query: 151 FRGP 154
P
Sbjct: 64 LLPP 67
>sp|B0U4B6|RS21_XYLFM 30S ribosomal protein S21 OS=Xylella fastidiosa (strain M12)
GN=rpsU PE=3 SV=1
Length = 71
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 36/59 (61%)
Query: 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRRRSQ 150
V V ENEP E L RF+R +AG++ E ++R F+E E+KRK A KR RR S+
Sbjct: 4 VKVRENEPFEFALRRFKRICEKAGILAETRKREFYEKPTQERKRKAAAAVKRQMRRTSR 62
>sp|Q9PG68|RS21_XYLFA 30S ribosomal protein S21 OS=Xylella fastidiosa (strain 9a5c)
GN=rpsU PE=3 SV=1
Length = 71
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 36/59 (61%)
Query: 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRRRSQ 150
V V ENEP E L RF+R +AG++ E ++R F+E E+KRK A KR RR S+
Sbjct: 4 VKVRENEPFEFALRRFKRICEKAGILAETRKREFYEKPTQERKRKAAAAVKRQMRRTSR 62
>sp|Q2S8V6|RS21_HAHCH 30S ribosomal protein S21 OS=Hahella chejuensis (strain KCTC 2396)
GN=rpsU PE=3 SV=1
Length = 71
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%)
Query: 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRN 144
V + ENEP + L RF+R +AG++ E +RR F+E E+KRK A KR+
Sbjct: 4 VKIKENEPFDVALRRFKRSCEKAGILSEVRRREFYEKPTSERKRKLAAAVKRH 56
>sp|Q3SGB2|RS21_THIDA 30S ribosomal protein S21 OS=Thiobacillus denitrificans (strain
ATCC 25259) GN=rpsU PE=3 SV=1
Length = 70
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 91 QVVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKR-NRRRRS 149
V V ENEP + L RF+R + + G++ E + R F+E E+KRK A KR ++R RS
Sbjct: 3 HVKVKENEPFDVALRRFKRSIEKVGLLTELRAREFYEKPTAERKRKLAAAVKRQSKRLRS 62
Query: 150 Q 150
Q
Sbjct: 63 Q 63
>sp|B4U8H0|RS21_HYDS0 30S ribosomal protein S21 OS=Hydrogenobaculum sp. (strain Y04AAS1)
GN=rpsU PE=3 SV=1
Length = 67
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKR 143
V+V ++E E+ + RF++ V R G++ E KRR F+E +KKRK R A KR
Sbjct: 4 VIVGDSESFEKAMKRFKKVVEREGILSELKRREFYEKPSQKKKRKERAARKR 55
>sp|B8GPU0|RS21_THISH 30S ribosomal protein S21 OS=Thioalkalivibrio sp. (strain HL-EbGR7)
GN=rpsU PE=3 SV=1
Length = 71
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 36/60 (60%)
Query: 91 QVVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRRRSQ 150
V V ENEP E L RF+R +AGV+ E +RR F+E + +KRK A KR +R S+
Sbjct: 3 HVRVKENEPFEVALRRFKRTCEKAGVLTEVRRREFYEKPTEIRKRKAAAAVKRQAKRVSK 62
>sp|Q47IP5|RS21_DECAR 30S ribosomal protein S21 OS=Dechloromonas aromatica (strain RCB)
GN=rpsU PE=3 SV=1
Length = 70
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRR 147
+ V ENEP E + RF+R V + G++ E + R F+E E+KRK A KR +R
Sbjct: 4 IRVKENEPFEVAIRRFKRTVEKTGLLTELRAREFYEKPTTERKRKAAAAVKRQHKR 59
>sp|Q2KYB0|RS21_BORA1 30S ribosomal protein S21 OS=Bordetella avium (strain 197N) GN=rpsU
PE=3 SV=1
Length = 70
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRR-RSQ 150
V + ENEP E L RF+R + + G++ E + R F+E E+KRK A KR+ +R RSQ
Sbjct: 4 VRLKENEPFEAALRRFKRTIEKTGLLTELRSREFYEKPTAERKRKHAAAVKRHYKRIRSQ 63
>sp|Q7VWM3|RS21_BORPE 30S ribosomal protein S21 OS=Bordetella pertussis (strain Tohama I
/ ATCC BAA-589 / NCTC 13251) GN=rpsU PE=3 SV=1
Length = 70
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRR-RSQ 150
V + ENEP E L RF+R + + G++ E + R F+E E+KRK A KR+ +R RSQ
Sbjct: 4 VRLKENEPFEAALRRFKRTIEKTGLLTELRSREFYEKPTAERKRKHAAAVKRHYKRIRSQ 63
>sp|A9IK87|RS21_BORPD 30S ribosomal protein S21 OS=Bordetella petrii (strain ATCC BAA-461
/ DSM 12804 / CCUG 43448) GN=rpsU PE=3 SV=1
Length = 70
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRR-RSQ 150
V + ENEP E L RF+R + + G++ E + R F+E E+KRK A KR+ +R RSQ
Sbjct: 4 VRLKENEPFEAALRRFKRTIEKTGLLTELRSREFYEKPTAERKRKHAAAVKRHYKRIRSQ 63
>sp|Q7W6Q9|RS21_BORPA 30S ribosomal protein S21 OS=Bordetella parapertussis (strain 12822
/ ATCC BAA-587 / NCTC 13253) GN=rpsU PE=3 SV=2
Length = 70
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRR-RSQ 150
V + ENEP E L RF+R + + G++ E + R F+E E+KRK A KR+ +R RSQ
Sbjct: 4 VRLKENEPFEAALRRFKRTIEKTGLLTELRSREFYEKPTAERKRKHAAAVKRHYKRIRSQ 63
>sp|Q7WHP3|RS21_BORBR 30S ribosomal protein S21 OS=Bordetella bronchiseptica (strain ATCC
BAA-588 / NCTC 13252 / RB50) GN=rpsU PE=3 SV=2
Length = 70
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRR-RSQ 150
V + ENEP E L RF+R + + G++ E + R F+E E+KRK A KR+ +R RSQ
Sbjct: 4 VRLKENEPFEAALRRFKRTIEKTGLLTELRSREFYEKPTAERKRKHAAAVKRHYKRIRSQ 63
>sp|A5EXR7|RS21_DICNV 30S ribosomal protein S21 OS=Dichelobacter nodosus (strain
VCS1703A) GN=rpsU PE=3 SV=1
Length = 71
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRR---- 147
V V +NEP + + RF+R +AGV+ E + R F+E E+KRK A KRN RR
Sbjct: 4 VKVRDNEPFDVAMRRFKRSCEKAGVLAEVRSREFYEKPTQERKRKLAAAVKRNSRRLKKE 63
Query: 148 RSQF 151
RS+F
Sbjct: 64 RSRF 67
>sp|Q0A5M8|RS21_ALHEH 30S ribosomal protein S21 OS=Alkalilimnicola ehrlichei (strain
MLHE-1) GN=rpsU PE=3 SV=1
Length = 71
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 36/59 (61%)
Query: 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRNRRRRSQ 150
V V ENEP E L RF+R +AGV+ E +RR +E E+KRK A KR+ +R S+
Sbjct: 4 VKVRENEPFEVALRRFKRSCEKAGVLSEIRRREHYEKPTQERKRKAAAAVKRHMKRLSR 62
>sp|Q4ZMF3|RS21_PSEU2 30S ribosomal protein S21 OS=Pseudomonas syringae pv. syringae
(strain B728a) GN=rpsU PE=3 SV=1
Length = 71
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%)
Query: 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRN 144
V V ENEP + L RF+R +AGV+ E + R F+E E+KRK A KR+
Sbjct: 4 VKVKENEPFDVALRRFKRSCEKAGVLAEVRSREFYEKPTSERKRKAAAAVKRH 56
>sp|Q88A58|RS21_PSESM 30S ribosomal protein S21 OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=rpsU PE=3 SV=1
Length = 71
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%)
Query: 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRN 144
V V ENEP + L RF+R +AGV+ E + R F+E E+KRK A KR+
Sbjct: 4 VKVKENEPFDVALRRFKRSCEKAGVLAEVRSREFYEKPTSERKRKAAAAVKRH 56
>sp|Q3K5S0|RS21_PSEPF 30S ribosomal protein S21 OS=Pseudomonas fluorescens (strain Pf0-1)
GN=rpsU PE=3 SV=1
Length = 71
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%)
Query: 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFETKQDEKKRKTREAAKRN 144
V V ENEP + L RF+R +AGV+ E + R F+E E+KRK A KR+
Sbjct: 4 VKVKENEPFDVALRRFKRSCEKAGVLAEVRSREFYEKPTSERKRKAAAAVKRH 56
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.126 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,082,173
Number of Sequences: 539616
Number of extensions: 2416720
Number of successful extensions: 15301
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 205
Number of HSP's that attempted gapping in prelim test: 13857
Number of HSP's gapped (non-prelim): 1486
length of query: 183
length of database: 191,569,459
effective HSP length: 110
effective length of query: 73
effective length of database: 132,211,699
effective search space: 9651454027
effective search space used: 9651454027
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)