Query 030110
Match_columns 183
No_of_seqs 121 out of 615
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 13:51:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030110.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030110hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ptfa_ d.94.1.1 (A:) Histidin 66.2 2.7 0.00019 28.3 3.5 29 87-116 58-86 (87)
2 d1ka5a_ d.94.1.1 (A:) Histidin 56.9 5.4 0.0004 26.8 3.8 29 87-116 58-86 (88)
3 d1udxa3 d.242.1.1 (A:341-416) 55.2 2.7 0.00019 28.0 1.8 23 101-123 33-55 (76)
4 d1qnaa1 d.129.1.1 (A:17-115) T 44.3 6.3 0.00046 27.0 2.5 38 79-116 53-90 (99)
5 d1mp9a1 d.129.1.1 (A:5-96) TAT 44.0 5.2 0.00038 26.9 1.9 38 79-116 55-92 (92)
6 d2hpra_ d.94.1.1 (A:) Histidin 42.7 12 0.00089 24.9 3.7 29 87-116 57-85 (87)
7 d1pcha_ d.94.1.1 (A:) Histidin 38.1 15 0.0011 24.6 3.6 30 87-117 57-86 (88)
8 d1aisa1 d.129.1.1 (A:1-92) TAT 37.6 9.4 0.00069 25.6 2.5 37 80-116 56-92 (92)
9 d1mqia_ c.94.1.1 (A:) Glutamat 26.1 23 0.0017 25.1 3.1 37 92-128 220-256 (260)
10 d1mo1a_ d.94.1.1 (A:) Crh, cat 21.3 32 0.0024 22.6 2.9 27 87-114 58-84 (87)
11 d1ea0a2 c.1.4.1 (A:423-1193) A 20.6 13 0.00092 34.2 0.7 45 69-119 241-285 (771)
No 1
>d1ptfa_ d.94.1.1 (A:) Histidine-containing phosphocarrier protein (HPr) {Enterococcus faecalis [TaxId: 1351]}
Probab=66.21 E-value=2.7 Score=28.27 Aligned_cols=29 Identities=14% Similarity=0.298 Sum_probs=24.8
Q ss_pred ccceEEEecCCCcHHHHHHHHHHHHHhhhh
Q 030110 87 AYNVQVVVDENEPEERLLNRFRREVMRAGV 116 (183)
Q Consensus 87 ~~mv~V~V~enE~iE~ALRRFKRkv~keGI 116 (183)
...++|.+ +|++.+.||..+...++++|+
T Consensus 58 G~~i~i~~-~G~de~~Al~~l~~~l~~egl 86 (87)
T d1ptfa_ 58 GSDVTITV-DGADEAEGMAAIVETLQKEGL 86 (87)
T ss_dssp TCEEEEEE-ESTTHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEE-ECCCHHHHHHHHHHHHHHcCC
Confidence 35677776 888999999999999999996
No 2
>d1ka5a_ d.94.1.1 (A:) Histidine-containing phosphocarrier protein (HPr) {Staphylococcus aureus [TaxId: 1280]}
Probab=56.87 E-value=5.4 Score=26.80 Aligned_cols=29 Identities=7% Similarity=0.249 Sum_probs=24.9
Q ss_pred ccceEEEecCCCcHHHHHHHHHHHHHhhhh
Q 030110 87 AYNVQVVVDENEPEERLLNRFRREVMRAGV 116 (183)
Q Consensus 87 ~~mv~V~V~enE~iE~ALRRFKRkv~keGI 116 (183)
...+.|.+ +|++.+.|+..+.+.+.++|+
T Consensus 58 G~~v~i~~-~G~de~~Al~~l~~~l~~egl 86 (88)
T d1ka5a_ 58 DAEITIYA-DGSDESDAIQAISDVLSKEGL 86 (88)
T ss_dssp TCEEEEEE-ESSSHHHHHHHHHHHHHHHTS
T ss_pred CCEEEEEE-ECCCHHHHHHHHHHHHHhcCC
Confidence 35677777 899999999999999999986
No 3
>d1udxa3 d.242.1.1 (A:341-416) Obg GTP-binding protein C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=55.16 E-value=2.7 Score=27.97 Aligned_cols=23 Identities=13% Similarity=0.146 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHhhh
Q 030110 101 ERLLNRFRREVMRAGVIQECKRR 123 (183)
Q Consensus 101 E~ALRRFKRkv~keGIL~E~KrR 123 (183)
+.|+++|.+.+.+-||.+++|+.
T Consensus 33 ~e~~~~f~~~l~~~Gv~~~L~~~ 55 (76)
T d1udxa3 33 MEAAGYLQEVFRRQGVEAALRAK 55 (76)
T ss_dssp GGGHHHHHHHHHHTTHHHHHHTT
T ss_pred HHHHHHHHHHHHHCChHHHHHHc
Confidence 57899999999999999999875
No 4
>d1qnaa1 d.129.1.1 (A:17-115) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=44.32 E-value=6.3 Score=27.03 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=31.7
Q ss_pred hhhhcccCccceEEEecCCCcHHHHHHHHHHHHHhhhh
Q 030110 79 ANTLFFKSAYNVQVVVDENEPEERLLNRFRREVMRAGV 116 (183)
Q Consensus 79 sn~l~fk~~~mv~V~V~enE~iE~ALRRFKRkv~keGI 116 (183)
+-++-|.++.++-.=.+.-|.+..|++++-+.|++.|+
T Consensus 53 ~t~lIF~SGKivitGaks~~~~~~a~~~i~~~l~k~g~ 90 (99)
T d1qnaa1 53 TTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGF 90 (99)
T ss_dssp EEEEEETTSEEEEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEEEcCCEEEEeccCCHHHHHHHHHHHHHHHHHcCC
Confidence 45667777777777788888899999999999999986
No 5
>d1mp9a1 d.129.1.1 (A:5-96) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=44.01 E-value=5.2 Score=26.94 Aligned_cols=38 Identities=18% Similarity=0.269 Sum_probs=29.9
Q ss_pred hhhhcccCccceEEEecCCCcHHHHHHHHHHHHHhhhh
Q 030110 79 ANTLFFKSAYNVQVVVDENEPEERLLNRFRREVMRAGV 116 (183)
Q Consensus 79 sn~l~fk~~~mv~V~V~enE~iE~ALRRFKRkv~keGI 116 (183)
..++-|.++.++-.=.+.-+.+..|+++|-+.+.+.||
T Consensus 55 ~t~lIF~SGkivitGaks~~~~~~a~~~~~~~L~~~G~ 92 (92)
T d1mp9a1 55 ITSLIFKSGKMVVTGAKSTDELIKAVKRIIKTLKKYGM 92 (92)
T ss_dssp EEEEECTTSEEEEECCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEEEcCCEEEEEccCCHHHHHHHHHHHHHHHHHcCC
Confidence 34556777766666677778899999999999999886
No 6
>d2hpra_ d.94.1.1 (A:) Histidine-containing phosphocarrier protein (HPr) {Bacillus subtilis [TaxId: 1423]}
Probab=42.75 E-value=12 Score=24.89 Aligned_cols=29 Identities=14% Similarity=0.274 Sum_probs=24.2
Q ss_pred ccceEEEecCCCcHHHHHHHHHHHHHhhhh
Q 030110 87 AYNVQVVVDENEPEERLLNRFRREVMRAGV 116 (183)
Q Consensus 87 ~~mv~V~V~enE~iE~ALRRFKRkv~keGI 116 (183)
...++|.+ +|++.+.|+..+.+.+..+|+
T Consensus 57 G~~v~i~~-~G~De~~A~~~l~~~l~~~g~ 85 (87)
T d2hpra_ 57 GAEITISA-SGADENDALNALEETMKCEGL 85 (87)
T ss_dssp TCEEEEEE-ESTTHHHHHHHHHHHHHHHTS
T ss_pred CCEEEEEE-ECcCHHHHHHHHHHHHHHcCC
Confidence 34677777 888999999999999988774
No 7
>d1pcha_ d.94.1.1 (A:) Histidine-containing phosphocarrier protein (HPr) {Mycoplasma capricolum [TaxId: 2095]}
Probab=38.13 E-value=15 Score=24.60 Aligned_cols=30 Identities=3% Similarity=0.327 Sum_probs=24.7
Q ss_pred ccceEEEecCCCcHHHHHHHHHHHHHhhhhH
Q 030110 87 AYNVQVVVDENEPEERLLNRFRREVMRAGVI 117 (183)
Q Consensus 87 ~~mv~V~V~enE~iE~ALRRFKRkv~keGIL 117 (183)
...++|.+ +|++.+.|+..+.+.+..+|+.
T Consensus 57 G~~v~i~~-~G~De~~A~~~l~~~l~~~~~~ 86 (88)
T d1pcha_ 57 GTEITIQA-DGNDADQAIQAIKQTMIDTALI 86 (88)
T ss_dssp TCEEEEEE-ESTTHHHHHHHHHHHHHHTTSS
T ss_pred CCEEEEEE-ECCCHHHHHHHHHHHHHHcCCC
Confidence 35677777 8899999999999999888753
No 8
>d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=37.63 E-value=9.4 Score=25.62 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=28.6
Q ss_pred hhhcccCccceEEEecCCCcHHHHHHHHHHHHHhhhh
Q 030110 80 NTLFFKSAYNVQVVVDENEPEERLLNRFRREVMRAGV 116 (183)
Q Consensus 80 n~l~fk~~~mv~V~V~enE~iE~ALRRFKRkv~keGI 116 (183)
-++-|.++.++..=.+.-|.+..|++++-+.+++.||
T Consensus 56 ~~lIF~sGkivitGakS~~~~~~a~~~i~~~l~~lGv 92 (92)
T d1aisa1 56 ALLIFSSGKLVVTGAKSVQDIERAVAKLAQKLKSIGV 92 (92)
T ss_dssp EEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEECCCEEEEEccCCHHHHHHHHHHHHHHHHHcCC
Confidence 3456666656655677777899999999999999886
No 9
>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR2 [TaxId: 10116]}
Probab=26.14 E-value=23 Score=25.11 Aligned_cols=37 Identities=8% Similarity=0.236 Sum_probs=28.8
Q ss_pred EEecCCCcHHHHHHHHHHHHHhhhhHHHHhhhcccCC
Q 030110 92 VVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFET 128 (183)
Q Consensus 92 V~V~enE~iE~ALRRFKRkv~keGIL~E~KrRRyYEK 128 (183)
+-++.|.++-.++.+.=.++.++|.++++-.|.|.++
T Consensus 220 ~a~~k~s~l~~~in~aL~~l~~~G~~~~l~~KwF~~~ 256 (260)
T d1mqia_ 220 IATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDK 256 (260)
T ss_dssp CEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHTTT
T ss_pred EEEcCChHHHHHHHHHHHHHHHCCHHHHHHHHhCCCC
Confidence 3345666666677777777889999999999999876
No 10
>d1mo1a_ d.94.1.1 (A:) Crh, catabolite repression HPr-like protein {Bacillus subtilis [TaxId: 1423]}
Probab=21.34 E-value=32 Score=22.63 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=21.8
Q ss_pred ccceEEEecCCCcHHHHHHHHHHHHHhh
Q 030110 87 AYNVQVVVDENEPEERLLNRFRREVMRA 114 (183)
Q Consensus 87 ~~mv~V~V~enE~iE~ALRRFKRkv~ke 114 (183)
...++|.+ +|++.+.|+..+...++++
T Consensus 58 G~~i~i~~-~G~de~~A~~~l~~~~~~~ 84 (87)
T d1mo1a_ 58 GTEVTLIA-QGEDEQEALEKLAAYVQEE 84 (87)
T ss_dssp TCEEEEEE-ESTTHHHHHHHHHHHHTTC
T ss_pred CCEEEEEE-ECCCHHHHHHHHHHHHHhh
Confidence 45677777 8999999999999877654
No 11
>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]}
Probab=20.64 E-value=13 Score=34.23 Aligned_cols=45 Identities=13% Similarity=0.151 Sum_probs=29.8
Q ss_pred hhhhccchhhhhhhcccCccceEEEecCCCcHHHHHHHHHHHHHhhhhHHH
Q 030110 69 ASVICPSLAYANTLFFKSAYNVQVVVDENEPEERLLNRFRREVMRAGVIQE 119 (183)
Q Consensus 69 ~sv~~p~la~sn~l~fk~~~mv~V~V~enE~iE~ALRRFKRkv~keGIL~E 119 (183)
.+++||.|+|..+...-... .-.+.+.|.|+.+|++.+++ |+++-
T Consensus 241 A~AV~PYLa~e~i~~~~~~~-----~~~~~~~~~a~~ny~kAi~k-GLlKI 285 (771)
T d1ea0a2 241 ATTVNAYLAQEAIAERHRRG-----LFGSMPLEKGMANYKKAIDD-GLLKI 285 (771)
T ss_dssp CSEEECHHHHHHHHHHHTTT-----TTTTCCHHHHHHHHHHHHHH-HHHHH
T ss_pred ccccChHHHHHHHHHHHhhh-----hccCCCHHHHHHHHHHHHHH-HHHHH
Confidence 57899999999875421110 01245789999999987765 55443
Done!